core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_000231255.1|JH370359.1@region_708927_726117@tool_cenote	cenote	CDS	708926	710038	GCA_000231255.1	JH370359.1	GCA_000231255.1|JH370359.1	GCA_000231255.1_JH370359.1	GCA_000231255.1|JH370359.1	GCA_000231255_1_1	GCA_000231255_1_1@C47	1	1113	GCA_000231255_1_1_643	GCA_000231255_1_1_643	+	1024539	.	PDB:3EZ9_B	ParA;-dna-binding,-winged-hth-protein	MATLFSENLTEQQKEHIVQLFKNFQHPTLQKDLISLNTLKKAEKGGDTLRVELSMPFAWNTAFAELKDALTEPLKAATEVESVKWQLNYQIATLKRANNHPAVKGVKNIIVVSSGKGGVGKSTISVNLAIALQQQGARVGILDADIYGPSIPHMLGAPHQRPTSPDNQHITPIEAHGLYANSIGFLMDEDNATIWRGPMASSALSQLLQETLWPDLDYLVIDMPPGTGDIQLTLSQQIPVTGAVVVTTPQDIALLDAVKGISMFERVSVPVLGIVENMSMHICSNCGHQEAIFGTGGAQRIADKYNIKVLGQQPLHIRLRQDLDRGEPTVIAAPEDDIAKSFMQLAEKVATELYWQGSVIPSEIMFREVK*	common_virus_hmm	common_virus	C47	17191	708926	726117	GCA_000231255.1|JH370359.1@region_708927_726117@tool_cenote_CDS_0001	persistent	direct	high	1112	0.999	GCA_000231255.1_00677
GCA_000231255.1|JH370359.1@region_708927_726117@tool_cenote	cenote	CDS	710476	711108	GCA_000231255.1	JH370359.1	GCA_000231255.1|JH370359.1	GCA_000231255.1_JH370359.1	GCA_000231255.1|JH370359.1	GCA_000231255_1_1	GCA_000231255_1_1@C47	1551	2183	GCA_000231255_1_1_644	GCA_000231255_1_1_644	+	1024539	.	PDB:5UU5_A	Major-Capsid-Protein	MKKYFLFLMFWLLTPSVFAHPHAFIDMKTKILVKNQQLIGFSTQWILDEPSSAAILYDINQAHGNKQALQKLIDEIIGNVVNEHYFSYLFDKNGNKVKYSAKPENYGMKTSGSQVLYYFDFMLSKPQSLVDNEFTLSTYDPTYYVAMYYDQPVNQTVDFSQLPTNCRGEVLEPQVDNKIKEYASSLDQSQRNEDNTLGALFAQKVRLICK*	hallmark_hmm	common_virus	C47	17191	708926	726117	GCA_000231255.1|JH370359.1@region_708927_726117@tool_cenote_CDS_0002	persistent	direct	high	633	1.0	GCA_000231255.1_00678
GCA_000231255.1|JH370359.1@region_708927_726117@tool_cenote	cenote	CDS	711124	712146	GCA_000231255.1	JH370359.1	GCA_000231255.1|JH370359.1	GCA_000231255.1_JH370359.1	GCA_000231255.1|JH370359.1	GCA_000231255_1_1	GCA_000231255_1_1@C47	2199	3221	GCA_000231255_1_1_645	GCA_000231255_1_1_645	+	1024539	.	COG2215	ABC-type nickel/cobalt efflux system, permease component RcnA [Inorganic ion transport and metabolism]. 	MKSRLFYTALFGLLIAAIIYLFPWLFTQVALWQREFNQLISGYLHDIKQQPAYAGSWLILVSFLYGVFHALGPGHGKFIIAGYLSTHQTQLSRSMQITFFSSLMQGVVAISAVSIIVLVLQLSSGYFNLSQLWLERTAFCLVILLGLNWCWKNGKILYKKRHQQKERPKIQRIQGISSGEMRVGSLIAEKSAVHISNVFPDHNEHCSCGHQHMPDPTKLKQNHTFKDSLLIILSIGMRPCSGAIFVLFLAYMLDLYRWGVFATLAMAFGTGITLSAFALLVRYARATAVKMGQWYRVPFANLDIEAVMKCVAGVMLIFFALSLLYSSTLPVSGGAVLFAR*	mmseqs_cdd	nonviral_gene	C47	17191	708926	726117	GCA_000231255.1|JH370359.1@region_708927_726117@tool_cenote_CDS_0003	persistent	direct	high	1022	0.999	GCA_000231255.1_00679
GCA_000231255.1|JH370359.1@region_708927_726117@tool_cenote	cenote	CDS	712695	714788	GCA_000231255.1	JH370359.1	GCA_000231255.1|JH370359.1	GCA_000231255.1_JH370359.1	GCA_000231255.1|JH370359.1	GCA_000231255_1_1	GCA_000231255_1_1@C47	3770	5863	GCA_000231255_1_1_646	GCA_000231255_1_1_646	+	1024539	.	PDB:5JXR_A	Chromatin-remodeling-complex-ATPase	MLKYTAFRKHLKNRPHFMSEKINTKPFILHSDFNPSGDQPQAIAKLAENLEDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLAPNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRLSATKSFLERRDTIVVASVSAIYGLGDPDSYLQMMLHLQQGAIINQRQILAKLAELQYTRNDQAFQRGTFRVRGEIIDIFPAESDERAVRIELFDDEIERLSLFDPLTGSSFGTIPRFTVYPKTHYVTPRERILDAIEKIKVELAQRREYFIKENKLLEEQRISQRTQFDIEMMNELGYCSGIENYSRYLSGRNEGEPPPTLFDYMPSDAILIIDESHVTVPQIGGMYRGDRSRKETLVEYGFRLPSALDNRPLRFEEFERLTPQTIYVSATPGPYELEKSGSEIIDQVVRPTGLLDPQIEIRPVSIQVDDLLSEARQRADKNERVLVTTLTKKMAEDLTDYLDEHGIRVRYLHSDIDTVERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAILYADSITKSMEKAITETNRRREKQTKYNEDHGIVPQALNKKVGELLDIGQGANQKVKANKQRGKMVAEPTALYAVPTSPKEYQQQIKKLEQQMYKFAQDLEFEKAAAVRDQLQQLRESFMLSGE*	common_virus_hmm	common_virus	C47	17191	708926	726117	GCA_000231255.1|JH370359.1@region_708927_726117@tool_cenote_CDS_0004	persistent	direct	high	2093	1.0	GCA_000231255.1_00681
GCA_000231255.1|JH370359.1@region_708927_726117@tool_cenote	cenote	CDS	714865	716247	GCA_000231255.1	JH370359.1	GCA_000231255.1|JH370359.1	GCA_000231255.1_JH370359.1	GCA_000231255.1|JH370359.1	GCA_000231255_1_1	GCA_000231255_1_1@C47	5940	7322	GCA_000231255_1_1_647	GCA_000231255_1_1_647	-	1024539	.	PRK10942	serine endoprotease DegP. 	MKKRNFVLTGIALGLSILTTPMISQAEIPAVVEGQQVPSLAPMLEKVLPSVVSISVEGKQKGRSAQMDDSIPEEFKFFFGPDMFDRDRAPRNFKGIGSGAIINAEKGYVLTNNHVIKDADKITVQLQDGREFKAKVIGADEMSDVALIQIEKPKNLTALKIADSDKLRVGDFTVAIGNPFGLGQTVTSGIVSALGRSMGSDSGMYENYIQTDAAVNRGNSGGPLINLNGELIGINTAIISPSGGNAGIAFAIPSNMANNLVQQILEFGEVRRGMLGIKGGELNADLAQAFDIEAKKGAFVSEVIPGSAADKAGLKAGDVITAMNGQAVSSFAEMRAKIATSGAGKEIELTYLRDGKSNNTKVTLQSDEQTQTSANNLLPALEGAELNNYDEKGVKGVSISKIKPNSLAEQRGLKSGDVIIGVNRQKIENLGQLRKALDNKPSAVALNIIRGDSNFYLLVQ*	mmseqs_cdd	nonviral_gene	C47	17191	708926	726117	GCA_000231255.1|JH370359.1@region_708927_726117@tool_cenote_CDS_0005	persistent	direct	high	1382	0.999	GCA_000231255.1_00682
GCA_000231255.1|JH370359.1@region_708927_726117@tool_cenote	cenote	CDS	716514	718184	GCA_000231255.1	JH370359.1	GCA_000231255.1|JH370359.1	GCA_000231255.1_JH370359.1	GCA_000231255.1|JH370359.1	GCA_000231255_1_1	GCA_000231255_1_1@C47	7589	9259	GCA_000231255_1_1_648	GCA_000231255_1_1_648	+	1024539	.	TIGR03719	ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.	MSTQFVYTMHRVGKVVPPKRHILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGIDKDIEGEARPQPGIKIGYLPQEPKLEPQQTVREAIEEAVGEVKRALTRLDEVYALYADPDADFDKLAAEQAELEAIIQAHDGHNLDNQLERAANALRLPDWDAKIEHLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLERFLHDYEGTVVAITHDRYFLDNVAGWILELDRGEGIPWEGNYSSWLEQKEKRLAQEQAQESARQKSIEKELEWVRQNPKGRQAKSKARMARFEELNSGEYQKRNETNELFIPPGPRLGDKVIEVQHLSKSYGDRTLIDDLSFSIPKGAIVGIIGANGAGKSTLFRMLSGKEQPDSGTITLGETVVLASVDQFRDAMDDKKTVWEEVSNGQDILTIGNFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQAGGNVLLLDEPTNDLDVETLRALENAILEFPGCAMVISHDRWFLDRIATHILDYGDEGKVTFYEGNFSDYEEWKKKTFGAEALQPHRIKYKRIAK*	mmseqs_cdd	nonviral_gene	C47	17191	708926	726117	GCA_000231255.1|JH370359.1@region_708927_726117@tool_cenote_CDS_0006	persistent	direct	high	1670	0.999	GCA_000231255.1_00683
GCA_000231255.1|JH370359.1@region_708927_726117@tool_cenote	cenote	CDS	718287	719195	GCA_000231255.1	JH370359.1	GCA_000231255.1|JH370359.1	GCA_000231255.1_JH370359.1	GCA_000231255.1|JH370359.1	GCA_000231255_1_1	GCA_000231255_1_1@C47	9362	10270	GCA_000231255_1_1_649	GCA_000231255_1_1_649	-	1024539	.	NF033477	collagen-binding adhesin autotransporter EmaA. EmaA (extracellular matrix protein adhesin ) is an outer membrane protein first described in Aggregatibacter (Actinobacillus) actinomycetemcomitans, a member of the Gammaproteobacteria. It is a glycoprotein, and has a C-terminal beta-barrel domain that marks it as an autotransporter. It serves as an adhesin that binds collagen, the most abundant material in the host extracellular matrix. It shares homology with the collagen-binding protein YadA of Yersinia enterocolitica.	MTHQLVKKTLVALLVTGTFSVGALAQAPSQRVPDPIDQIFKNKNDIAANKATLEKKADSVDVELNRKAISGIAKQQFDDGKTIRANKDNIDKNTKAIAENKAALGNVNKNINGILRDVQDLTVRTTGNEAKSRSNEQKIKKNEENINKNASDIKENKNKIAENKKAIENKADKADVEKNRADIAANSRAIATFRSSSQNIAALTTKVDRNTARIDRLDSRVNELDKEVKNGLASQAALSGLFQPYNVGSLNLSTAVGGYKSKTALAVGSGYRFNENVAAKAGVAVSTNGGSATYNVGLNFEW*	mmseqs_cdd	nonviral_gene	C47	17191	708926	726117	GCA_000231255.1|JH370359.1@region_708927_726117@tool_cenote_CDS_0007	shell	direct	high	908	0.999	GCA_000231255.1_00684
GCA_000231255.1|JH370359.1@region_708927_726117@tool_cenote	cenote	CDS	719693	721591	GCA_000231255.1	JH370359.1	GCA_000231255.1|JH370359.1	GCA_000231255.1_JH370359.1	GCA_000231255.1|JH370359.1	GCA_000231255_1_1	GCA_000231255_1_1@C47	10768	12666	GCA_000231255_1_1_650	GCA_000231255_1_1_650	+	1024539	.	PDB:4URL_A	DNA-topoisomerase-IV	MTTNYSANEITVLKDLEPVQLRPGMYTDTTRPNHLAQEVIDNSVDEALAGFASKIEVILHKNQSIEVIDNGRGMPVDIHPVEKVSGVEVIMSKLHAGGKFSNKNYTFSGGLHGVGISVVNALSERVDVSIKRNGEVYKIAFENGKKVEDLTVIGICGRRTTGTTVHFKPNPKYFDSEKFSVSRLRHLLRAKAVLCSGLEIKFIDKVNDTEDTWLYQDGLNDYLMEAVNGLVTLPEQPFIGEFKGEKEAVSWALLWLPEGGELIGESYVNLIPTALGGTHVNGLRQGLLDAMRKFCEFRNLLPRGVKLTADDLWDRCAYVLSLKMQDPQFAGQTKERLSSRQSAMFIGGVVKDAFSLWLNQNIQTAELLADMAISSAQRRLRATKKVVRKKLVSGPALPGKLADCSSQDLNLTELFLVEGDSAGGSAKQAREREYQAILPLRGKILNTWEVSPEQVLASQEVHDIAVALGIDPDNDDLSQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVEQGHVYVAMPPLYRIDLGKDVFYALDESEKEAILDRLKGKKGKPNVQRFKGLGEMNPMQLRETTMDPSTRRLVQLTFEAQGEESQETMETMDMLLAKKRAEDRKNWLQAKGDQVDLAV*	common_virus_hmm	common_virus	C47	17191	708926	726117	GCA_000231255.1|JH370359.1@region_708927_726117@tool_cenote_CDS_0008	persistent	direct	high	1898	0.999	GCA_000231255.1_00685
GCA_000231255.1|JH370359.1@region_708927_726117@tool_cenote	cenote	CDS	721752	724004	GCA_000231255.1	JH370359.1	GCA_000231255.1|JH370359.1	GCA_000231255.1_JH370359.1	GCA_000231255.1|JH370359.1	GCA_000231255_1_1	GCA_000231255_1_1@C47	12827	15079	GCA_000231255_1_1_651	GCA_000231255_1_1_651	+	1024539	.	PDB:4FM9_A	DNA-topoisomerase-2-alpha	MTDSINYEGIEQMPLRHFTERAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNAAAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAVDDPKSFAAMRYTESRLSKISEVLLAELGQGTVDYQPNFDGTLEEPQYLPARLPHILLNGTTGIAVGMATDIPPHNINEIADAAVMLLDNPKTTLDDLLTVVQGPDFPTEAEIISPKEEIHKIYQQGRGSIKMRAAWKKEDGEIIISALPHQASPSKVIAQIAEQMTAKKLPMVEDIRDEADHENPVRIVIVPRSNRVDTDAMMAHLFATTDLEKSYRVNMNMIGLDYKPAVKNLLEILTEWLTFRRTTVTRRLQYRLDKVLARLHILQGLMIAFLNIDEVIEIIRHEDEPKAELMARFNLSDAQAEAILNLRLRHLAKLEEHQLQAEQAELEKERSSLEEILGSERRLNTLLKKEIQQDAKTYASPRRSPLVERAEAKAIAENEMLPTEPVTVILSEMGWVRCAKGHDIDPQGLNYKAGDKYLAHAYGKSNQPAVFIDSTGRSYALDPLSLPSARSQGEPLTGKLTLPAGATIDQLLIENEDQPLLMASDAGYGFICKFADLVARNKAGKALISLPENAKVLPPLTLKNPTALLVALTSAGRMLIFPVQDLPELSKGKGNKIVTIPSANAKARSELLVRLLLIEENSSLVFHSGKRKVTLKPEDLQKFRAERGRKGTQLPRGLHSNVEIEVVTPQE*	common_virus_hmm	common_virus	C47	17191	708926	726117	GCA_000231255.1|JH370359.1@region_708927_726117@tool_cenote_CDS_0009	persistent	direct	high	2252	1.0	GCA_000231255.1_00686
GCA_000231255.1|JH370359.1@region_708927_726117@tool_cenote	cenote	CDS	724028	724159	GCA_000231255.1	JH370359.1	GCA_000231255.1|JH370359.1	GCA_000231255.1_JH370359.1	GCA_000231255.1|JH370359.1	GCA_000231255_1_1	GCA_000231255_1_1@C47	15103	15234	GCA_000231255_1_1_652	GCA_000231255_1_1_652	+	1024539	.	.	hypothetical protein	MGPFLSQSAVDFCDVFTQRANATQDYLDEDLCVADIYSSFKLM*	.	hypothetical_protein	C47	17191	708926	726117	GCA_000231255.1|JH370359.1@region_708927_726117@tool_cenote_CDS_0010	cloud	direct	high	131	0.992	GCA_000231255.1_00687
GCA_000231255.1|JH370359.1@region_708927_726117@tool_cenote	cenote	CDS	724283	724765	GCA_000231255.1	JH370359.1	GCA_000231255.1|JH370359.1	GCA_000231255.1_JH370359.1	GCA_000231255.1|JH370359.1	GCA_000231255_1_1	GCA_000231255_1_1@C47	15358	15840	GCA_000231255_1_1_653	GCA_000231255_1_1_653	-	1024539	.	PDB:6TE9_A	Portal-Protein	MSKTMIGLDTAKSEVLAGKLNELLATYQVFYTNVRGYHWNIKDVNFFELHAKFEEIYTDLVEKVDEVAERILTLGYTPNNAFSQYLSHSRIKEEIAVSSAAACLRGTLEGFKVLLTQQREILALAADADDEGTASQMSDYIKEQEKLIWMFQAACQSCRG*	hallmark_hmm	common_virus	C47	17191	708926	726117	GCA_000231255.1|JH370359.1@region_708927_726117@tool_cenote_CDS_0011	persistent	direct	high	482	0.998	GCA_000231255.1_00688
GCA_000231255.1|JH370359.1@region_708927_726117@tool_cenote	cenote	CDS	724956	726116	GCA_000231255.1	JH370359.1	GCA_000231255.1|JH370359.1	GCA_000231255.1_JH370359.1	GCA_000231255.1|JH370359.1	GCA_000231255_1_1	GCA_000231255_1_1@C47	16031	17191	GCA_000231255_1_1_654	GCA_000231255_1_1_654	+	1024539	.	PRK15136	multidrug efflux MFS transporter periplasmic adaptor subunit EmrA. 	MTEVSKPTMPTQKNTRKKALSIFFFLLILISILTGLYWFFFIKNYQTTEDAYVSGNQVMISSQIAGNVRQINAENMDFVHAGDVLLELDDTDYQLSFSQAQNTLASAVRQISQLGYTVKQLEATVQANQTALTKAQGDLARREQLGKSGAIDKESLQHAREAVMTAEANLKAVKNQLAANKSLLMNVPLKEQPEIQKAISSVKQAWLNLQRTKITSPVDGYVARRSTQVGQKVAVGSALMAIISNEQMWVDANFKETQLKDMRIGQPVKLSFDLYGHDVKFDGKVEGIEMGTGSAFSLLPAQNATGNWIKVVQRVPVRISLDAQQIANYPLRMGLSTLVEVNISDTRGEMLSQQKRTEPLYSTNTLNYDQSAVENLIEKIIRDNTN*	mmseqs_cdd	nonviral_gene	C47	17191	708926	726117	GCA_000231255.1|JH370359.1@region_708927_726117@tool_cenote_CDS_0012	persistent	direct	high	1160	0.999	GCA_000231255.1_00689