core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	135658	136215	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	1	558	GCA_000234035_1_3_143	GCA_000234035_1_3_143	-	312904	.	PFAM:PF06852.11	acetyltransferase	MSLTSQIITAEFPDLEKVEQLNTEAFPEEERAPLSELLRYGDGEYSHFFAFYDGNEFVGFAFSVYNERAFYISFFAIMPHLRSHGYGGKIIDKLVDFYQRTMVLEVERLDEPCGNLEQRKARMDFYKRNGFRSSHAYLEYDGLSFEILYKGAFFDEEAYRDIFKKIQEDGYFEFEIKHGHGRDWE*	phrogs_hmm	hypothetical_protein	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0001	persistent	direct	high	557	0.998	GCA_000234035.1_01585
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	136250	136693	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	593	1036	GCA_000234035_1_3_144	GCA_000234035_1_3_144	-	312904	.	cd08287	formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family.  The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones.  FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.	MKAAVFVKLGRMEVYEVARPGAIVGRVSVPHTGDINIGDYWMANLAMAGGPASCTTYDKEVLLKAVLDGQINPGKVFTQSYTLDDIDQAYKDMADRKTIKAMIVMWREVVPIFAIQSQFNEWSTTLSRSLFYRLHFCLKVLNYLNFW*	mmseqs_cdd	nonviral_gene	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0002	cloud	direct	high	443	0.998	GCA_000234035.1_01586
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	136936	137754	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	1279	2097	GCA_000234035_1_3_145	GCA_000234035_1_3_145	+	312904	.	PF10112.9	5-bromo-4-chloroindolyl phosphate hydrolysis protein	MPRRNYNNVRSRRWIGILLILIAVGIIIQYLIPILLSIGIGYGIYYYATHKPKKITEPSASQQIEDLKKEIRAADSRIKQLDNYLKEKSYANYQQLADQLLPQLSYIQGRADTLKKYISSEIYQRIQRKVQDVTTDIHEQLHNLRAQTSESLKPNLEELAPELLETIHNIQIDHEAILKKISQSESNNKEELTAIHQSQMEHYEDILEGYLKIKTSPKDFYNAEERLSSAKAAIEQFDLDLDETLRQLNEADLRDFDISLRILSKKEHNTEL*	hhsuite_tools	hypothetical_protein	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0003	persistent	direct	high	818	0.999	GCA_000234035.1_01587
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	137773	139044	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	2116	3387	GCA_000234035_1_3_146	GCA_000234035_1_3_146	+	312904	.	PFAM:PF05816.10	tellurite-resistance	MSQEFNFDIDKIANNAISKTDRTTEIIESTETQANGQMNFLEKLTPEQQDAIIAKAPQLVDNFISDQNTLLDFGQAAVEEVNNTVNRILAEQKKLQIPQVDELLKNANKELNGFVSKYKDTQIAELDKKPNFLEKLFKQSKNTLQEFYFDSQNIEQKMDSMAATVVKQEDLLARNIVSAEMLIEDNTKSIENLVGVISFIEATQKEAGARASTLQNEVAQLDTATLDYQTKSQELARLTEVVNTLEQQHTEYISRLYVAWATTPQMRNLVKVSSDMRQKLGMLRRNTIPTMKLSIAQLGILQQSMKSGQVADAISNANNAALQMLAETSKEVIPQMERISQNPTIAVESVTKLAESLVAQNQGIISAIDKGREKRALLEATVIKSAETINDSVKLRDQKIIQALLDQGKEIQKEVDKPTTSET*	phrogs_hmm	hypothetical_protein	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0004	persistent	direct	high	1271	0.999	GCA_000234035.1_01588
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	139163	140125	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	3506	4468	GCA_000234035_1_3_147	GCA_000234035_1_3_147	+	312904	.	PRK00114	Hsp33 family molecular chaperone HslO. 	MVRGRTTKSLSYEILIFVPLPFLFYVTIKGMDKIIKTISENGAFRAYVLDSTETVRTAQEKHQTLASSTVALGRTLIASQILAANEKGDTKITVKVLGTSSLGAIITVADTKGTVKGYVQNSGVDIKKTATGEVLVGPFVGNGEFLVITDYGTGNPYHSMTPLVSGEIGEDLAFYLTESQQTPSAVGLNVLLDTNDKVKVAGGFLLQVLPGAKEEEITHFEKRIQEMPAISTLLESENHIEALLSAIYGNEPYKRLSEEELRFQCDCSKERFLNALLSLPKSDLEEMRDEDHGAEITCQFCQSTYHFDEKDLEELIRDKS*	mmseqs_cdd	nonviral_gene	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0005	persistent	direct	high	962	0.999	GCA_000234035.1_01589
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	140112	141083	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	4455	5426	GCA_000234035_1_3_148	GCA_000234035_1_3_148	+	312904	.	TIGR00737	putative TIM-barrel protein, nifR3 family. This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). This branch includes NifR3 itself, from Rhodobacter capsulatus. It excludes a broadly distributed but more sparsely populated subfamily that contains sll0926 from Synechocystis PCC6803, HI0634 from Haemophilus influenzae, and BB0225 from Borrelia burgdorferi. It also excludes a shorter and more distant archaeal subfamily.The function of nifR3, a member of this family, is unknown, but it is found in an operon with nitrogen-sensing two component regulators in Rhodobacter capsulatus.Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. [Unknown function, General]	MTNLNTPFLIGDVKIPNRTVLAPMAGVTNSAFRTIAKELGAGLVVMEMVSDKGIQYNNKKTLHMLHIDEEEHPVSIQLFGSDEDSLARAAEFIQENTQTDIVDINMGCPVNKIVKNEAGAKWLKDPEKIYSIINKVRSVLDIPLTVKMRTGWADASLAVENALAAEAAGVAALAMHGRTREQMYTGHADLETLHNVAQALTKIPFIANGDIRTVQDAQQRIEEVGADAVMIGRAAMGNPYLFHQINHYFETGEILPDLSFEDKMQVAYDHLKRLIDLKGEHIAVREFRGLAPHYLRGTAGAAKLRGAIAQANSLVEIEALLQV*	mmseqs_cdd	nonviral_gene	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0006	persistent	direct	high	971	0.999	GCA_000234035.1_01590
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	141154	141594	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	5497	5937	GCA_000234035_1_3_149	GCA_000234035_1_3_149	-	312904	.	PRK03624	putative acetyltransferase; Provisional	MNIREMVEADYDQVYQLWLSCAGMGLNHLDDSKEGIAQFLKRNPQTCLVAVENQIIIGAILVGFDGRRAYIYHTAVHPNYRRRGIARQLVETVLTVLDELKIHKVALVVFKRNTEGNRFWETLGFSTREDLIYRNQARTEMVRLDT*	mmseqs_cdd	nonviral_gene	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0007	persistent	direct	high	440	0.998	GCA_000234035.1_01591
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	141641	144070	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	5984	8413	GCA_000234035_1_3_150	GCA_000234035_1_3_150	-	312904	.	PDB:4M4W_K	Replicative-helicase	MKYSKALTESIESAQLLASHFETDYLESWQLLIAMANNPYSVAGSVLNDYPLEIDDFEKAAFHITGKVYQQEGDFTIWPFSYRMKVLFLTAEQIAGAVHANNLGTEHILLAMLFDQGSLAARILEFIGFSYEDKEGVLRMTDLRKNLEHKASWNKEDLKAIRHLNKSAAATRQTMANMMGMPPATSGGLEDYTRDLTEMAHMGLLEPVIGRDKEISRILQILSRKTKNNPVLVGDAGVGKTALALGLAQRVADGQVPNELAKMRVLELDLMNVVAGTRFRGDFEERMNNIINDIEADGHVILFIDELHTIMGSGSGIDSTLDAANILKPALAKGTLRTIGATTQEEYQKYIEKDAALSRRFAKVTIEEPTVADSIAILQGLKKSYEDHHKVVITDSAIETAVKYAHRYLTSKHLPDSAIDLLDEAAARVQNKSPQNHVKAELSAADEALMAGDWNKVGTLVEKESQPIVYKLRVKDEDVLATLSSLSGIPVQKLTQTDAKKYLNLEKELHKRVIGQNEAISAISRAIRRNQSGIRTSKRPIGSFLFLGPTGVGKTELAKALAEVLFDDETALIRFDMSEYMEKFAASRLNGAPPGYVGYEEGGELTEKVRNRPYSVLLFDEVEKAHPDIFNVLLQVLDDGVLTDSKGRKVDFSNTIIIMTSNLGATSLRDDKTVGFGARDVRFDHENMEKRMMEELKKAYRPEFINRIDEKVVFHSLTSEDMQEVVKIMVQPLISSLAEKGIKLKFQPSALKLLAQEGYDPEMGARPLRRILQTRVEDHLSELLLAGELKTGQSLKVGVKAGKLKFEVL*	rep_hall_hmm	common_virus	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0008	persistent	direct	high	2429	1.0	GCA_000234035.1_01592
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	144074	144535	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	8417	8878	GCA_000234035_1_3_151	GCA_000234035_1_3_151	-	312904	.	COG4463	Transcriptional regulator CtsR [Transcription]. 	MSSKNTSDSIEEYIKTLLAQAGIAELKRSEIADVFQVVPSQINYVIKTRFTESRGYIVESKRGGGGYIRIGRIEFSNHHALLCDLLHSVGEQISHQVFTDIIQLLFDEQIMTEREGNLLLATTTDRVLGTNAAQIRARMLKKILQQVDRKGKN*	mmseqs_cdd	nonviral_gene	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0009	persistent	direct	high	461	0.998	GCA_000234035.1_01593
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	144794	145144	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	9137	9487	GCA_000234035_1_3_152	GCA_000234035_1_3_152	+	312904	.	.	hypothetical protein	MKMDWFKYTRHVLVWWFSTLFFFTIISADYVDVQVATLVACLFAPFLFEPSSIKPKTKWIIDLAIIVISVFAVLFTQTYRIAFTYSEITYLLISLIILILIDLVISHKGFTKRIVK*	.	hypothetical_protein	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0010	persistent	direct	high	350	0.997	GCA_000234035.1_01594
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	145221	146264	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	9564	10607	GCA_000234035_1_3_153	GCA_000234035_1_3_153	-	312904	.	COG0264	Translation elongation factor EF-Ts [Translation, ribosomal structure and biogenesis]. 	MAEITAKLVKELREKSGAGVMDAKKALVEVDGDIEKAIELLREKGMAKAAKKADRVAAEGLTGVYVSGNIAAIVEVNSETDFVAKNAQFVELVNETAKVIAEGKPANNEEALALIMPSGETLEAAYVSATATIGEKISFRRFAVVEKADDQVFGAYQHNGGRIGVITVLSGSDEDLAKHVAMHVAAMKPSVLSYKELSEEFIHDELAQMNHKIDQDNESRAMVGKPALPHYKFGSKLQLTDEVIAQAEEDIKAGLAAEGKPEKIWDKIIPGKMDRFMLDNTKVDQQYTLLAQVYIMDDSKTVEAFLESQGVTIAGFTRFEVGDGIEKAANDFESEVAATMAAALGQN*	mmseqs_cdd	nonviral_gene	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0011	persistent	direct	high	1043	0.999	GCA_000234035.1_01595
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	146347	147129	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	10690	11472	GCA_000234035_1_3_154	GCA_000234035_1_3_154	-	312904	.	PRK05299	30S ribosomal protein S2; Provisional	MAVISMKQLLEAGVHFGHQTRRWNPKMAKYIFTERNGIHVIDLQQTVKFADQAYDFMRDAAANDAVILFVGTKKQAADAVKDEAERAGQYYINHRWLGGTLTNWETIQKRVARLKEIKRMEEDGIFDVLPKKEVALLNKQRARLEKFLGGIEEMPRIPDVMYVVDPHKEQIAVKEAKKLGIPVVAMVDTNTDPDDIDVIIPANDDAIRAVKLITAKMADAIIEGRQGEDNVESVEAELAATDTQADSIEEIVEVVEGTNE*	mmseqs_cdd	nonviral_gene	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0012	persistent	direct	high	782	0.999	GCA_000234035.1_01596
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	147779	148036	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	12122	12379	GCA_000234035_1_3_155	GCA_000234035_1_3_155	-	312904	.	.	hypothetical protein	MKILNIKLTDINHTKLGFEHWVAVTYQVPILKSEYTVKLVLIMDFEIKDKAVLDYIIKEWRYRDLVRHSCQMYSMENKEKVIHMY*	.	hypothetical_protein	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0013	cloud	direct	high	257	0.996	GCA_000234035.1_01598
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	148165	149112	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	12508	13455	GCA_000234035_1_3_156	GCA_000234035_1_3_156	-	312904	.	COG4823	Abortive infection bacteriophage resistance protein  [Defense mechanisms]. 	MKQPIPLSWESQIDKYKQRGMIIDDNDVEKLKNISYYRLKEFAAPLANYSDGEISYAGIQFKEVLARYYKDKNLRIFLLHAIEKIEVSIKTRISYILGSGYGAFGYLNFAQWSNKDKHTRFDIEKIQFRIKRNLLKTVKKSQLSELKMKQNHDEDGFPTVWLAIDLLMFGDMVSILEIMSENNIRRVANYYDCTPAELISWMKCLNFVRNVCAHNSNIIDIQITTKPKTRKEWNNLIFMNKEVHKENEFYKPTNKLAIVLIIIVTLVNQINSKYKWNDIQRSVNSLCKSRDDRARLLGFKNFQSAKDVIRSIKQL*	mmseqs_cdd	nonviral_gene	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0014	cloud	direct	high	947	0.999	GCA_000234035.1_01599
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	149357	150172	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	13700	14515	GCA_000234035_1_3_157	GCA_000234035_1_3_157	-	312904	.	PDB:5T1Q_D	Adenosylhomocysteinase	MSRIESSIAEMRRLQAIPVHYDMGDRYGNDADGDERIEYDCSSSVSQALGLSLNNNTETLKSNLPKINYNCVYDGVDGSIDFEYGDVAIWSPRDGSSSLGAFGHVVIMTGPTTMIHCSYGYDGIVESDYNQIWELNGRPRETVFRENGQAAAPQPAPLTNKSQNLKIYRVDDLQFVNGIWQVRCNDLVPVEFDWTDNGIACEDIDLVDENGNLLADQETRAGSLFVINPNKVVSDGEGAYGSGNYYWRNVELSASGRVWLSVWSVDHLLHG*	common_virus_hmm	common_virus	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0015	cloud	direct	high	815	0.999	GCA_000234035.1_01600
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	150175	150483	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	14518	14826	GCA_000234035_1_3_158	GCA_000234035_1_3_158	-	312904	.	PFAM:PF04531.12	Phage_holin_1	MSKINWKVRFNAKNKAFIARVFVAVLVPILVYYGLEVKDLTSWDAVFNLVVKAISNPFVIGTAVVNFINILPDPTTAGFSDSDRALGYEEPHGENTETDKGE*	common_virus_hmm	common_virus	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0016	cloud	direct	high	308	0.997	GCA_000234035.1_01601
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	150485	150769	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	14828	15112	GCA_000234035_1_3_159	GCA_000234035_1_3_159	-	312904	.	PFAM:PF04531.12	holin	MFVVRNDFVYQVIIFAIPLIGLYWSQKDRAAKHERRITVLEKDIENLREFKKTASRRLDSHEEQNKAILVLAEQVKGLSEDIRELKKIINKKEN*	phrogs_hmm	hypothetical_protein	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0017	cloud	direct	high	284	0.996	GCA_000234035.1_01602
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	150787	151335	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	15130	15678	GCA_000234035_1_3_160	GCA_000234035_1_3_160	-	312904	.	PF07104.11	Protein of unknown function (DUF1366)	MKFRVANKYLREANKTFVAIRCDEPYTAYDRVLEGDRMNDSDEILTDAVLKIVATELDPTGAIAEMQQKLDKTSDATNKNKDSVERTSKLTDVLILLAISIEGGMQQDLYKKVASLLPTLTDGARYSFGDIVSAPYPYDTNPKYPQGTPVILKFLDNWTHKGQPLQELLQKGACTTIMPKLN*	hhsuite_tools	hypothetical_protein	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0018	shell	direct	high	548	0.998	GCA_000234035.1_01603
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	151362	155468	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	15705	19811	GCA_000234035_1_3_161	GCA_000234035_1_3_161	-	312904	.	PDB:3GUD_A	Neck-appendage-protein	MKRNVRIAIRDTTDTHVVGFFDNKSGIKYNAANLTQFLKGSCSVLVLTYHSKKMVAQSGQKLAFRFKDKDFWLNINSVKKTGYNIELTAYSLSLEANKEKRGPHKPASAMTIKQYIEYYDPENSFVIGINEVADKSLKLEWSGTDTILARLYSVANGFGAELEFVTELNNDYSLKRHIINIYREGNLGKDKTGLPVRVGEKLKVINYSDNMDDFYTGIRRTGKDGLTIAGLNKKIYDDKGNLLFYSSGDTLYAPQARDKYPSIARKTNDGYIVNEDSGTEYANKEALFGYMLSELKKHCELKVDYEVEGAVDGNIGDKKTLIDAQHFDPPLYVQARISEQTESLLKASDVKTSLSNYVRKSSQIANELLQKVEQLALEATPYTIKLATNNGIIFKNNQGQSTVYPTLKKGNKTVECTWQWLVDNQSFETSATFEVRAAGMSNKLVLTAIALIDGKEVAREQVTFSNVNDGAKGDPGKSITITKTERQADGVKVTFSDNKSIVVPKGDKGDPADPKELNQLKQEMNQAKQGLDDVKADLLREKSESSSKIDQVKQDVGAIRNQQTTYEQTNTQNLARITGQLGDKASKSEVKQTADGIREEISRLNTASRNYILNSDMTTATDRTTGTGLPLSSDLIRTLNAERSFTLSVDVVAQNMVAKNDKKRFGISYELKFSDGSNLWTEVFQTSDTALTRISQNFVLPAGKQIVSIAGGLYFQATGQIRLSRPKWGIGHNNKEWIKAVEDTDEQITAARTIFEKTAEGLKTDMAAVKSYVADDGKRREQLEQYTRTETARSAEALRKQASESYVAKSQYSEDARGVARRFEELNLNGTNLLPNTDFKNLIDVGNQFTVGGKTYKVKTLDKWYSSYNDGIPNPKTNYHGYFNETKFSETVFEFNESNGVREWKGLPIFITNDSRYTVGKYIFSVDVNATGEGTHLEVGFYYYNKSGMREFHAGRARKNITSINSWSRISLELSINDDVDFSKEMGFYIYGYGFTSNSVLYFKRPKLTNTNWTPSVEDNNKYTETKIAEYKQTVDGQLAAVKQDVNGKVSQTTFDQRANQITQTVQELNDNVVKKNQIRVNENGIVSTAEKVVNGQTLASMIAQHPEWVEIIAKLLKVKADMIVNGAITADKLNVKKLSALASSLGEISAGLIDLRKHWERTSSEDVWGINRDVTYDTGALLGDFGLLTNGAPTRLQKNDAKPTIMPLVWLNSGELYFANVDSRYDLKQIIVNGVYPFVRTGDAKIRFGKMEDGRDALYIECLLSELYLKANNYTDWKQSEINNKVRWKVQGSLVLVDFNLQFDRDGDYHLADIPKQYVPSNKMFPVQAWSLDRNKDRTAQLNVGGDLHIIGAERGIPYLGQIIWTY*	hallmark_hmm	common_virus	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0019	cloud	direct	high	4106	1.0	GCA_000234035.1_01604
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	155468	156991	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	19811	21334	GCA_000234035_1_3_162	GCA_000234035_1_3_162	-	312904	.	PDB:5LY8_A	Distal-Tail-protein	MANELIKVYFNDVELTKWITVLDGFTALGGADYDPTFHNYPILNGSEFIKTRKKLKKIPVPFYVKYEGVADYDALQTSLNVDEPKKLTFSHLPDRVFYAIPSGDLDFKEIKFSGKGTINFSIVDGLAHSKNPRYFEFKKNEQGILEAEIENNGSEEIPVNYRIKLKRESGFVGITSRYGAMQFGKIEETDSVEDKKNVLLSANGTGDFSNWTDGTIFYENKNKKVVTKMTADKNLGGRLGVLSVDFTNTADGACFGAVKELNLPQQAKDWYIWARAWFETGYVSQTGAWCLSVVDSDNHFIAGMAIEKSERTRNKALVVFLMGDGAGGSRVVKSIEFSPTLWVKDNPYSLEGKDQNRNMFDLRKEGDKITYFWYGSYHSFFESKVKDKQAAKVQFFVGQYKGRNSTINELVTHHYLNDFAIYKLNVPYWRDVPNRYPTGAELFIDSTGEVNPEEKGRLYVNNLLAPDDEILGTDYFKVPPGKTKVQLLVSSFAEVESARAEIEEAWI*	hallmark_hmm	common_virus	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0020	cloud	direct	high	1523	0.999	GCA_000234035.1_01605
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	156976	160050	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	21319	24393	GCA_000234035_1_3_163	GCA_000234035_1_3_163	-	312904	.	UniProtKB:R2PRN9_9ENTE	tail-tape-measure-protein-	MATELGQAYVQIMPSAKGISGSIQSALAPEATAAGNSAGSSIGSTLVKAATGIIAAAGIGKAFSAAINEGAALQQSLGGIETLFKGSADKVKAYANEAYRTTGLSANAYMENVTGFSASLLQSLGGDTNKAAEIANMAMVDMSDNANKMGTSMDRIQDAYQGFAKQNYTMLDNLKLGYGGTRTEMERLLADATKLTGVKYDINNLSDVYQAIHAIQGKLDITGTTAKEAATTFSGSFASMKAAAQNVLGKLALGEDIMPSLKALAETTSTFLFKNFIPMVGNILRGLPTVIGTVLKDGIAAIFGDGIAKSITDKIYNIYANVSGVLNALSDMIFGSGNKADNKDFLKSYLGLDEKLASRIVNIGENIRVTFVNIGSTIGNIAGIIGSFVSDLLGIAGGEKSVNAIGSEFESVTGFIKSASEKIKEFTGWLKNSPAALDSLKSAVVGITTAWTAYKAVTSLLRGIEAVRNATLAVTNGLMLAQFVRTGALTAAEAANAAATIGASGAFGIFNAVLSANPIGIVVTAIGALVAGLTWFFTQTKIGKKIWSGFVSWIKQAWQGIADFFVGIWSGISDGAKNLWNGVTDTWNAVVDTIKNAWNGIVEFFSNLWSGITSGVSAAWTAITQTIMTIVQPFIDGFINIWNGIKDGLSQMWEGVKMIFQGAWDFIKSIVLGAVLIVLDIITGNFGKLGEDLGLIWQGISDAVSTIWEGIKTYFMGVVSAIVGYGQSVFENFSNALAAIWDFIKNTASVAWEWIKTTISNLITGLVQGAQNILNGFMSFLSSLWNAITSVAVGAWNGLKSSVQAIINGIVQGAQNAWNSMKQGVSNLVSGIANIFNGLRNINLWSAGRAILDGFLGGLKSAWQGVTDFVGGIAGWIRDHKGPIEYDRKLLIPAGRAIMNGLDEGLRNQFRSVKSTVSNMAGEITDSLEDQPLSIGLSGFESVNPQMDVSNAILTTKMANVAQPQSREIELLSIIAKLANRPTIVSQELDKREISRIIAEPVAEEQARKQAILNAVDGLGWQMN*	hallmark_hmm	common_virus	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0021	cloud	direct	high	3074	1.0	GCA_000234035.1_01606
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	160050	160424	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	24393	24767	GCA_000234035_1_3_164	GCA_000234035_1_3_164	-	312904	.	pfam17318	Family of unknown function (DUF5361). This is a family of unknown function found in Bacteria.	MIKADEDALICDLAETYHIYDYRQLPALKVAVFSIGLRDDSRIKMKLSNQKVSTETLLLAGIFDRLSTLAWFKTADGQKGTNRPESIVEQLTAEPQERKERVFTSGEEFERARKEILEKIGGEH*	mmseqs_cdd	nonviral_gene	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0022	cloud	direct	high	374	0.997	GCA_000234035.1_01607
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	160439	160777	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	24782	25120	GCA_000234035_1_3_165	GCA_000234035_1_3_165	-	312904	.	.	hypothetical protein	MSKSKKNKVKTPSKQVAKMNLPELNSNVIKGTTSTGFKFEVSQERLANYELVEAIADVDKNPLVLPKLVKKLLGPQAEDLKEHVRDENGLVPLNRLMAEIEEIFNSKTSLKN*	.	hypothetical_protein	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0023	cloud	direct	high	338	0.997	GCA_000234035.1_01608
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	160780	161331	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	25123	25674	GCA_000234035_1_3_166	GCA_000234035_1_3_166	-	312904	.	UniProtKB:F8S0S2_9CAUD	tail-protein-	MSKSSNVTTAKPKVGGAIYSAPLGTELPTDATTALNAAFKSLGYISEDGMTNTNSPESEDIKAWGGDVVNSSQTEKKDTFGFTLIEALNVEVLKEVYGSENVSGDLSTGIEVKANSKELKDHCLVAEIVMKNGVLKRIVVPQGKVTEIGEISYKDGETVGYQTTVTAFPDKDQNTHYEYIKGA*	hallmark_hmm	common_virus	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0024	cloud	direct	high	551	0.998	GCA_000234035.1_01609
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	161347	161682	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	25690	26025	GCA_000234035_1_3_167	GCA_000234035_1_3_167	-	312904	.	PDB:2LFP_A	tail-completion-protein	MIEIIIKKYLDGHLDVPSFFEHETKMPDSFILIEKTSGSERDHSKSATFAFQSYASSMQKAAKLNEKVKEVVKEMVELNSISGVHLNSDYNYTDTETKRYRYQAVFDINYF*	hallmark_hmm	common_virus	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0025	cloud	direct	high	335	0.997	GCA_000234035.1_01610
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	161683	161910	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	26026	26253	GCA_000234035_1_3_168	GCA_000234035_1_3_168	-	312904	.	Uniprot:A0A0C5ADH8_9CAUD	type-I-neck-protein	MKFKLNRAGVADLMKSGAMQTVLNKHASNIKNRCGDGYEQDVYVGRNRANAMVSAKTTKAKKDNLKNNTLLKAVR*	hallmark_hmm	common_virus	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0026	cloud	direct	high	227	0.996	GCA_000234035.1_01611
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	161900	162241	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	26243	26584	GCA_000234035_1_3_169	GCA_000234035_1_3_169	-	312904	.	PFAM:PF10665.8	Minor-capsid-protein	MARIKGIPVVLIDKVKTGQDDFGHSIFEDKEIEVENVLVSPTTSEDITTQLNLTGRKADYTLGIPKGDTHDWENKEVRFFGKRWQVFGLPLEGIESLIPLDWNKKVTVERYEI*	hallmark_hmm	common_virus	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0027	cloud	direct	high	341	0.997	GCA_000234035.1_01612
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	162228	162623	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	26571	26966	GCA_000234035_1_3_170	GCA_000234035_1_3_170	-	312904	.	PFAM:PF09355.9	head-to-tail-adaptor	MENFATVDELQELWRPLKLDEQKRAEALLKVVSALLRVEAEKVGKDLDKLVVVNESYACVVKSVVVDVVARTLMTSTDQEPMTQVSEGALGYTWSGSYLVPGGGLFIKDSELKRLGFKKQRYGVIDIYGTD*	hallmark_hmm	common_virus	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0028	cloud	direct	high	395	0.997	GCA_000234035.1_01613
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	162629	162835	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	26972	27178	GCA_000234035_1_3_171	GCA_000234035_1_3_171	-	312904	.	cd12935	LEM-like domain of lamina-associated polypeptide 2 (LAP2) and similar proteins. LAP2, also termed thymopoietin (TP), or thymopoietin-related peptide (TPRP), is composed of isoform alpha and isoforms beta/gamma and may be involved in chromatin organization and postmitotic reassembly. Some of the LAP2 isoforms are inner nuclear membrane proteins that can bind to nuclear lamins and chromatin, while others are nonmembrane nuclear polypeptides. All LAP2 isoforms contain an N-terminal lamina-associated polypeptide-Emerin-MAN1 (LEM)-domain that is connected to a highly divergent LEM-like domain by an unstructured linker. Both LEM and LEM-like domains share the same structural fold, mainly composed of two large parallel alpha helices. However, their biochemical nature of the solvent-accessible residues is completely different, which indicates the two domains may target different protein surfaces. The LEM domain is responsible for the interaction with the nonspecific DNA binding protein barrier-to-autointegration factor (BAF), and the LEM-like domain is involved in chromosome binding. The family also includes the yeast helix-extension-helix domain-containing proteins, Heh1p (formerly called Src1p) and Heh2p, and their uncharacterized homologs found mainly in fungi and several in bacteria. Heh1p and Heh2p are inner nuclear membrane proteins that might interact with nuclear pore complexes (NPCs). Heh1p is involved in mitosis. It functions at the interface between subtelomeric gene expression and transcription export (TREX)-dependent messenger RNA export through NPCs. The function of Heh2p remains ill-defined. Both Heh1p and Heh2p contain a LEM-like domain (also termed HeH domain), but lack a LEM domain.	MEYINKETLASIETGCELGGDWVPASEFKEDYKLTVPEIKSKLDELGINYDSKAAKADLLDLLEQHEG*	mmseqs_cdd	nonviral_gene	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0029	cloud	direct	high	206	0.995	GCA_000234035.1_01614
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	162837	163727	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	27180	28070	GCA_000234035_1_3_172	GCA_000234035_1_3_172	-	312904	.	PDB:3JB5_B	Major-Capsid-protein	MATLQSGDLFPVETVQDIFSKVKGHSTLAKLTTQEPIPFTGTETFVFNLEGNAEIVGEGNPSSAGNATMKPKVIKPVLITYQARVSEEFVHCSEEKQLSYLKSFIDGLAKKVAQAIDIASFHGLEPKSMTDASFKATNSFDGLITGNVVTYEADKIDENIDAAVATITANDCEVNGIALSPAAGAALGKIKVNGVVQYPEYRFGQNPDSFYGMKSDVNKTLTTVASTAKKDHVIVGDFENAVKWGYAENIPLEIIEYGDPDGAGRDLKRYREVCLRTEVYAGWGILDEQAFARVEA*	hallmark_hmm	common_virus	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0030	cloud	direct	high	890	0.999	GCA_000234035.1_01615
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	163731	164195	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	28074	28538	GCA_000234035_1_3_173	GCA_000234035_1_3_173	-	312904	.	PDB:6B0X_d	Major-Capsid-protein	MRMSEFKAITTQEEFDAAIKSRLVREKEKYSDYDQLKSRVAELETENGGLKSSIEASNQSKAEADKQVADLQSQIAGFETEKLRTRVALEHGLPLDLAARLQGDDEEALKADAEKLAGFMKIKKPVPPLKGNEPNLGNDEDAALRGMLRNMRGE*	hallmark_hmm	common_virus	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0031	cloud	direct	moderate	459	0.987	GCA_000234035.1_01616
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	164271	165689	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	28614	30032	GCA_000234035_1_3_174	GCA_000234035_1_3_174	-	312904	.	PFAM:PF03354.14	Large-Terminase	MARTKKKLGNQNPTQSVILPYTKKKSLYKEAIDIYERTGLSSYPWQQNLLKAIMAVDKTGVWVHQKFGYSIPRRNGKSEILYILELWGLEHGLNMLHTAHRISTSHSSFEKVKRYLEKMGYEDGEDFNSIRAKGQERIELYKSGGVVQFRTRTSNGGLGEGFDLLIIDEAQEYTTEQESALKYTVTDSDNPMTIMCGTPPTPVSSGTVFTKYREACLFGKGKYSGWAEWSVNEEKEIDDVEAWYNSNPSMGFHLNERKIEAELGEDKLDHNVQRLGFWPTYNQKSAISETEWNVLKVEGMPKLSGRLFVGIKYGQDGTNVSMSIAVRTADKRIFIETIDCQSVRNGNHWIVAFLKQADVSQIVVDGASGQKVLDDELKDYKIKNVILPTVKEIITANSLWEQGIYQHTICHNGQPSLTKVATNCDKRNIGSNGGFGYRSHFSDMDISLMDSALLAHWACVTTKPKKKQKISY*	hallmark_hmm	common_virus	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0032	cloud	direct	high	1418	0.999	GCA_000234035.1_01617
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	165797	166096	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	30140	30439	GCA_000234035_1_3_175	GCA_000234035_1_3_175	-	312904	.	.	hypothetical protein	MSNKDDFLEELSELANQEDDRIWSESHLDGYSDFYKENEASKVWWIDKLDAIGEHLFSFDQKKIYNLFVDYPHNMMDKEVEIFDKENPYWKEFLSNRKK*	.	hypothetical_protein	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0033	cloud	direct	high	299	0.997	GCA_000234035.1_01618
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	166086	167480	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	30429	31823	GCA_000234035_1_3_176	GCA_000234035_1_3_176	-	312904	.	PFAM:PF06152.10	minor-head-protein	MDKDIFPELIKSIQDDFERAYGKSEVVRKSFEALKSKKATYTTVNDFAIEIGQILSKALGASLSADKLPDGKLYYNIAKRLLEDTLGRNYGLVSSYASDVQKQLNERANIHLKTQIPALNQDRIDGIVNRVSSEQDFDDIKWILQEPIVNFTQSIVDDSIEKNAEFHHKAGLQPEIVRKSVAKCCDWCQEVQGIYKYPRVPKDIYRRHQRCRCIVDYDPKNGKVQDVWSKIWRKQKDSDKIKERKGLNKEENISVVRKSALQHGIKVNPIKRSKVKKTEEAIIKAVGGGDQTKGSCSSLALAYIGNKAGFDVLDYRDGKSRTFFASMLNIKNISELPNVHSHVVADTNDFTAVKKLIGQMQDDKEYYLATGKHAAIVRKKEGWFQYLELQAPFEGNGFKPITNAVLKERFGCQRSHSVYGQKLQVPNVLIDSDSLGENEEFQKILGFINTKKGQQNKGDKGYVK*	phrogs_hmm	hypothetical_protein	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0034	cloud	direct	high	1394	0.999	GCA_000234035.1_01619
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	167473	168744	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	31816	33087	GCA_000234035_1_3_177	GCA_000234035_1_3_177	-	312904	.	PDB:2JES_G	Portal-Protein	MSLKGMSYLRKKLLNYKLRVDMRYKQYAMKYNDISVGITIPAEVRMKYRSVLGWAAKGVDSLADRLVFREFANDDFEANEIFNQNNPDVFFDSAVLSALIGSCCFVYISQGATEIPRLQVIEASNATGVLDPITGLLTEGYAVLQRDDYDNPLLEAYFTEDMTWYYPKNEKPYSIHNPAGVPLLVPVIHRPDAVRPFGRSRITRAGMYYQRYAKRTLERADVTAEFYSYPQKYILGMDPSADAMDKWKATVSSLLRIDKDEEGDKPTVGQFTTSSMTPFTEQLKTAAAGFAGEMGLTMDDLGFVSDNPSSVEAIKASHENLRLAGRKAQRSLGSGLLNVAYVAVCLRDEFHYLRSQFVNTNIKWEPLFEADASTLTMIGDGAIKLNQAIPGFLDGEAIRDLTGVKGSGNVVPALPSEKEAVDG*	hallmark_hmm	common_virus	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0035	cloud	direct	moderate	1209	0.95	GCA_000234035.1_01620
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	168848	169183	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	33191	33526	GCA_000234035_1_3_178	GCA_000234035_1_3_178	-	312904	.	pfam01844	HNH endonuclease. His-Asn-His (HNH) proteins are a very common family of small nucleic acid-binding proteins that are generally associated with endonuclease activity.	MEMRADRSGPHRVAFEKNKKIILKTRNICGICGQPVDKSLRYPHPLSPVIDHIIPVNKNGHPSDIANLQLAHWQCNRQKSDKLYAEERAVGSVVIGNRNLPQSINWTSYRS*	mmseqs_cdd	common_virus	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0036	cloud	direct	high	335	0.997	GCA_000234035.1_01621
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	169361	169927	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	33704	34270	GCA_000234035_1_3_179	GCA_000234035_1_3_179	-	312904	.	CDD:cd01192	site-specific-tyrosine-recombinase	MRRVEPIRDVDDIQRLKDYLKDRNERDYMLIVTGLYSGMRISDIIPLQVKQVTGEHIEIKERKTGKTKRFAINPELRRTLNNYIKNNDLKGYDFLFQSRKRKRADGVRITHIGRVAAYQIIKSAAESIGLQNIGTHSLRKTFGYHHYKKNQNVAILMEIFNHSSPDITLRYIGYKQDELDSSMIDFSY*	common_virus_hmm	common_virus	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0037	cloud	direct	high	566	0.998	GCA_000234035.1_01622
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	170035	170472	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	34378	34815	GCA_000234035_1_3_180	GCA_000234035_1_3_180	-	312904	.	TIGR01637	phage transcriptional regulator, ArpU family. This model represents a family of phage proteins, including ArpU, called a putative autolysin regulatory protein. ArpU was described as a regulator of cellular muramidase-2 of Enterococcus hirae but appears to have been cloned from a prophage. This family appears related to the RinA family of bacteriophage transcriptional activators and to some sporulation-specific sigma factors. We propose that this is a phage transcriptional activator family. [Mobile and extrachromosomal element functions, Prophage functions, Regulatory functions, DNA interactions]	MPFFPEINEVKTKENARKILRGYPRWRRVANDKNGQRVTTIYSFTPRNPNFTNNSQVEKLAIRKVDAEIELDAIEQAVSNLHNPFYRRILFEKYLKSTPEKDFSVYQNLAISESSYYDLLDKALIAFAEIYRNGEQVAISGENPE*	mmseqs_cdd	common_virus	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0038	cloud	direct	high	437	0.998	GCA_000234035.1_01623
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	170477	170668	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	34820	35011	GCA_000234035_1_3_181	GCA_000234035_1_3_181	-	312904	.	.	hypothetical protein	MAIAKKCDRCGKFHEIYNKNDDSSNINSLVTANADEYNKRYNQKLINLCPDCKDSFFNWLKKR*	.	hypothetical_protein	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0039	cloud	direct	high	191	0.995	GCA_000234035.1_01624
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	170646	171575	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	34989	35918	GCA_000234035_1_3_182	GCA_000234035_1_3_182	-	312904	.	PFAM:PF09681.9	replisome-organiser	MSEIKWIKITTDIFDDEKIRLIDALPEHDAILVIWFKILTLAGRQGGNGLLMMNNKVHYTDEMLAAIFNRPITTIRLALQTFEQFGMIEIINGIISLPNWEKHQNVDGMEKAKEQTRKRVARYREKQKQLLENGNVTCNVTVTPCNATDIDIEIDRDREKDKDNIVVIDKQNFIQEIEANLGRGLVKFEFDMINDYLLNQKVSTELFLEAVKIAVANNVRKFNYIARILDNWINQGIRTPEQAYQAQRDFQAKKNNKVIVKNQKAGNNPDWSNPDYKNETSPEKQAELEKQKQELLKRLEKKDGNSKKV*	rep_hall_hmm	common_virus	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0040	cloud	direct	high	929	0.999	GCA_000234035.1_01625
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	171648	172397	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	35991	36740	GCA_000234035_1_3_183	GCA_000234035_1_3_183	-	312904	.	PDB:1G60_B	Adenine-specific-DNA-methyltransferase	MKCELFHDNFQNYKRYGIPKAQLVIADIPYNLGENAYASSPEWYVDGDNKNGESDKAKSTFFNTDVNFNIAEFMHFCSKMLIKEPKEKGKAPCMIVFCAHQQQQMVIDLAKRYGFQKYIPIVFIKKSSPQVLKANMKIVGAVEYALVLYRDKLPKFNNDGQMVLNHFPWIVDQSYPKIHKTQKPVPVLKRLIEIYTDKGDVVIDPCAGSGATLRAALELERQAYGFEIDRFFYKDAKEKMLTSFQASLF*	common_virus_hmm	common_virus	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0041	cloud	direct	high	749	0.999	GCA_000234035.1_01626
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	172394	172642	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	36737	36985	GCA_000234035_1_3_184	GCA_000234035_1_3_184	-	312904	.	.	hypothetical protein	MRENGKTYNRFITGLKAMIEHLEFLEDEVRRCYHDMEEYEAKIDLLETQKMDLVETLANKTWQDMRQTAFKRRQARKWRAKA*	.	hypothetical_protein	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0042	cloud	direct	high	248	0.996	GCA_000234035.1_01627
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	172660	173028	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	37003	37371	GCA_000234035_1_3_185	GCA_000234035_1_3_185	-	312904	.	PDB:1Z9F_A	Single-stranded-DNA-binding-protein	MINNVVLVGRMTRDAELRYTPQNQAVATFTLAVNRNFKNQSGEREADFINVVIWRQQAENLANWAKKGTLIGITGRIQTRTYENQQGQHVYVMEVVADNFQILQNRNKAANADSLYGEEPTY*	common_virus_hmm	common_virus	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0043	persistent	direct	high	368	0.997	GCA_000234035.1_01628
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	173043	173276	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	37386	37619	GCA_000234035_1_3_186	GCA_000234035_1_3_186	-	312904	.	.	hypothetical protein	MSEILGAVLTLVLVFFLGAFINHLDWRKEQKKLERQAKEDERIELEAMYVVCAIENDRRERMRKLAEARKKKTGWNY*	.	hypothetical_protein	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0044	shell	direct	high	233	0.996	GCA_000234035.1_01629
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	173276	173542	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	37619	37885	GCA_000234035_1_3_187	GCA_000234035_1_3_187	-	312904	.	.	hypothetical protein	MSEIIDRKPFRINFKNKDQTIFAVIEGVLCIFFRNDWGWLNVPDEVYNKYWSYIKNKGITYISDEELQRLSQKFTNGVELINIRESEK*	.	hypothetical_protein	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0045	cloud	direct	high	266	0.996	GCA_000234035.1_01630
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	173545	173853	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	37888	38196	GCA_000234035_1_3_188	GCA_000234035_1_3_188	-	312904	.	.	hypothetical protein	MTLNERIKNLEALHIVQKRGLANTQLWLVFVSFIMFLLVVGMIAAYGKQQTQIKDLQAELERVTNEQKDVNQRQDVMINKFNQMYYEYQHKKITGKDNFPGG*	.	hypothetical_protein	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0046	shell	direct	high	308	0.997	GCA_000234035.1_01631
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	173840	174259	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	38183	38602	GCA_000234035_1_3_189	GCA_000234035_1_3_189	-	312904	.	TIGR01671	phage uncharacterized protein TIGR01671. This model represents an uncharacterized, well-conserved family of proteins found in bacteriophage and prophage regions of Gram-positive bacteria. [Mobile and extrachromosomal element functions, Prophage functions, Hypothetical proteins, Conserved]	MIPKFRGRSTVEDDKGKWVYGHLLIDDNRALIINGIIEANDEYVSLENWCDIDMKTIGQSTGLKDKNGTEIFEGDALKNNDYPNQTFICKHSRLQASFQAESLNGLLTLSLWKDEERDWQVLGNIYEKFEPLEAINDPE*	mmseqs_cdd	common_virus	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0047	cloud	direct	high	419	0.998	GCA_000234035.1_01632
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	174243	174452	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	38586	38795	GCA_000234035_1_3_190	GCA_000234035_1_3_190	-	312904	.	.	hypothetical protein	MKFKRCQCGSETFYMRQNVTGTIDYPVNIDGEPDGYVSYDNVNYYDARKYYRCIECDKRAKEVQDDTKI*	.	hypothetical_protein	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0048	cloud	direct	high	209	0.995	GCA_000234035.1_01633
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	174449	174619	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	38792	38962	GCA_000234035_1_3_191	GCA_000234035_1_3_191	-	312904	.	.	hypothetical protein	MKVAKYTHKAFDGVNVIRGWVLVNDYGDKEFVYYNGVGLCVHSVSDWEGELREVEE*	.	hypothetical_protein	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0049	cloud	direct	high	170	0.994	GCA_000234035.1_01634
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	174616	175329	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	38959	39672	GCA_000234035_1_3_192	GCA_000234035_1_3_192	-	312904	.	pfam07852	Protein of unknown function (DUF1642). The sequences making up this family are derived from various hypothetical phage and prophage proteins. The region in question is approximately 140 amino acids long.	MNKKEALKRLEEIKTPTIFGNFVGYYGARDLIDEIYKTPLYLRNILARLRELPEHDREVWLKGIMDEFELDFSHAKWREGYEQGKFDGVVEAEKSKPVIPQFVADWIDYCKENHFTITGAFDPVSEYGIGIAGTFKGSVYKCTRWALDNQNLFARAWLDGYEVEQERRYKAVLPNLYEEENVLHFSQEDEVWYFNNDFNDNVSVDKDSRYHTRKELEDAGFGWVFDCEGVEVQEVEK*	mmseqs_cdd	common_virus	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0050	cloud	direct	high	713	0.999	GCA_000234035.1_01635
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	175331	175555	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	39674	39898	GCA_000234035_1_3_193	GCA_000234035_1_3_193	-	312904	.	.	hypothetical protein	MQNQEQIRLIMNWERNHYRLGTNYKNKLAKRSVEAVKLELADLTREWDSVTFSVEPKGAMKIEGDRMTIFRKRG*	.	hypothetical_protein	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0051	shell	direct	high	224	0.996	GCA_000234035.1_01636
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	175558	176004	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	39901	40347	GCA_000234035_1_3_194	GCA_000234035_1_3_194	-	312904	.	.	hypothetical protein	MPNWAKGTLKLRGRRENIASALKDMLLNANVSFEGGCDDDLLVFNSTAHYFYINNTRRAFIETDQVEVWLEEDFCIVELDKFKQAWAVIPENFKEISKKHDVDIKIFTFEMGMEFTQEIEICKGKIIKNNCNEFDNYQWDVPFSNLGG*	.	hypothetical_protein	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0052	cloud	direct	high	446	0.998	GCA_000234035.1_01637
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	176008	176292	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	40351	40635	GCA_000234035_1_3_195	GCA_000234035_1_3_195	-	312904	.	PFAM:PF09035.9	Excisionase	MNDLMNQMLDQFEAGLMDRALKVMHVVTDEKRHYPMELNKSQCSEMLLGTKDTGTFDARFNCHKDFPRIEGKRDKFPRDEVIEWYHRNWMKTGG*	common_virus_hmm	common_virus	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0053	shell	direct	high	284	0.996	GCA_000234035.1_01638
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	176314	176676	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	40657	41019	GCA_000234035_1_3_196	GCA_000234035_1_3_196	-	312904	.	.	hypothetical protein	MAVSRDMTELEIKVLNGIKNGASFDLPIQASELRISLGLSKRMLEEVIESLRVNFRQPIIAKRTQPSGYYLPRNEEERQAGLAPYKRQIATEQKNLAAVMAVNLDEFWQRKKPDGNQAQK*	.	hypothetical_protein	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0054	shell	direct	high	362	0.997	GCA_000234035.1_01639
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	176685	176882	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	41028	41225	GCA_000234035_1_3_197	GCA_000234035_1_3_197	-	312904	.	.	hypothetical protein	MSNVAVNVVRIEPDAYDAAVKFANENDLKISKVISMFVRYGVENVELKEVDVRTEKFCIGDQVIN*	.	hypothetical_protein	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0055	cloud	direct	high	197	0.995	GCA_000234035.1_01640
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	177029	177247	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	41372	41590	GCA_000234035_1_3_198	GCA_000234035_1_3_198	-	312904	.	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain  [Transcription]. 	MQIKLYELRKKAGLNQADLAKKIGISVNQYGKKERGQQEFTQDEMFLLSNFFNKSISDIFLPRESPKREHQI*	mmseqs_cdd	nonviral_gene	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0056	cloud	direct	high	218	0.995	GCA_000234035.1_01641
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	177304	177729	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	41647	42072	GCA_000234035_1_3_199	GCA_000234035_1_3_199	+	312904	.	.	hypothetical protein	MNWIQWLEFINNITAPFGFLLTIFTFLLARATRKKLEKTEEITLFNAERAQYLSKLDGIKTVIDESENRKDIIPEKIITNTLKLISELENNYPCLFKHDKITAVALKDIKALKDKTKIPLVEFLDPFNRLYSMFTNRKEIK*	.	hypothetical_protein	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0057	cloud	direct	high	425	0.998	GCA_000234035.1_01642
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	177729	178058	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	42072	42401	GCA_000234035_1_3_200	GCA_000234035_1_3_200	+	312904	.	.	hypothetical protein	MDNKIMDNIIINKLSTLTLNHQIKWNTIDHLTVRGTPYSQQFQHILPDKSFFTKYEGKTFVVLYGEIRDFFRNRTIENYFLQEIQGETIEDVNVPEEDIIKLHTIISLI*	.	hypothetical_protein	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0058	cloud	direct	high	329	0.997	GCA_000234035.1_01643
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	178062	178196	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	42405	42539	GCA_000234035_1_3_201	GCA_000234035_1_3_201	-	312904	.	.	hypothetical protein	MLIKIVSLLLSVTAIVMSLFHIHELYHEYKRLSKRVKYWNKRHR*	.	hypothetical_protein	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0059	cloud	direct	high	134	0.993	GCA_000234035.1_01644
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	178377	178490	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	42720	42833	GCA_000234035_1_3_202	GCA_000234035_1_3_202	-	312904	.	.	hypothetical protein	MLRRRRKQKDPWLTQPRATVIAAIIALIAVILQLLFK*	.	hypothetical_protein	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0060	.	unmatched_CDS	none	0	0	.
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	178659	179399	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	43002	43742	GCA_000234035_1_3_203	GCA_000234035_1_3_203	+	312904	.	PDB:2FJR_A	Repressor-protein-CI	MELNIYIGQKIKEFRTKEKMTQSDLAKVLDTTKQTISRYEKGDRKAGQDTLFTLCDIFNVSIDDFFPPIQSPDASNELVQAINDTVIQLTPPNQKIVLRTSEDLLEGQKTRGEKITEISEPLTEYHVFEKLAAGNGYNYMEDRNYDVVFFNKDIDHDFASWVYGDSMEPKFLDGSVALIKDTGFDYDGAIYAVDWDGQSYIKKVYKEKDGLRLVSINDKYDDKFAKWEEEPRIIGKVVGNFMPVER*	common_virus_hmm	common_virus	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0061	cloud	direct	high	740	0.999	GCA_000234035.1_01645
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	179586	179957	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	43929	44300	GCA_000234035_1_3_204	GCA_000234035_1_3_204	+	312904	.	PFAM:PF09151.9	zinc-finger-domain-protein	MGLKGLLKAKTIGEYLQAKKNPELMKQIEDRSLGTVLKQSAQVSNQNSIVKNQKRLEKNAIKCPHCKSKNVQFMQQGKKAFSVRKAVGGAVLTGGIGTLAGFAGKKGKKQWHCQECGNVFETK*	phrogs_hmm	hypothetical_protein	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0062	cloud	direct	high	371	0.997	GCA_000234035.1_01646
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	180075	180647	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	44418	44990	GCA_000234035_1_3_205	GCA_000234035_1_3_205	+	312904	.	PDB:1Z19_B	Integrase	MASIRKRGKYFEYRVVYHDSLGERHEASCGGFKTKAQARAAGQKREVELRNSPMSNNEVTMLDYYKAWAQLYKKPYIKKKTWNSYKQTENHIIKYFGQIKLKDMTPVRYQEFLNKFGSKYAQDTIERTHYHIKSAVKIAVRDQLIPSNFTEGAVVKSQKEKSQKLKAILRKMSISMSFQRLKKIHNIFHI*	common_virus_hmm	common_virus	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0063	shell	direct	high	572	0.998	GCA_000234035.1_01647
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	180644	181144	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	44987	45487	GCA_000234035_1_3_206	GCA_000234035_1_3_206	+	312904	.	PDB:1Z19_B	Integrase	MTLYILAISGMRFAEAMGLTWDDIDFKNQVFRVENTWDYSDTEDFSETKNEQSIREIPFNDNVAKVLKNYKENYWRENKQGRVLFGASNRATNTALKRMVKREVHPHTLRHTYASYLIFKEVPVASISKLLGHKSILITLKVYAHQFEKMKEKHHSEVRNILSEIH*	common_virus_hmm	common_virus	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0064	shell	direct	high	500	0.998	GCA_000234035.1_01648
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	181478	182275	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	45821	46618	GCA_000234035_1_3_207	GCA_000234035_1_3_207	-	312904	.	.	hypothetical protein	MKTIFENQEVKLNRKNGSTVIVRNDGFSYLDAKSEKKNLNISFDKVSTILSLRYCNSNSSYNLIFRDQNGKNMAEFDTDTTIYNNDHNILETKAILLAFAARKLTKDFPNNLRDLDIILAFSMKEKEIRIASGIIYGSKHKISIEDIRRVQCVTNGTISNLALYKSDKKTFWDIPDMKVPCNEITLPLFEAIVTKNTGKGIDFSRGNGFDQKTSEFMIIRYMDANFFVNSDGTLDKGWQKQIYDRMSAYKYDLATLLEGYCRLRV*	.	hypothetical_protein	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0065	persistent	direct	high	797	0.999	GCA_000234035.1_01649
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	182483	183019	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	46826	47362	GCA_000234035_1_3_208	GCA_000234035_1_3_208	-	312904	.	COG0250	Transcription antitermination factor NusG [Transcription]. 	MDSFDKGWFVLQTYSGYENKVKENLLQRAQTYNMLENILRVEIPTQTVQVEKNGKTKEVEENRFPGYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRQILISMGQTVQEFDIHVKVGDTVRIIDGAFADYTGKITEIDNSKVKMIISMFGNDTVAEVNLSQIAEL*	mmseqs_cdd	nonviral_gene	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0066	persistent	direct	high	536	0.998	GCA_000234035.1_01650
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	CDS	183165	183341	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	47508	47684	GCA_000234035_1_3_209	GCA_000234035_1_3_209	-	312904	.	PRK07597	preprotein translocase subunit SecE; Reviewed	MKFIRDTFQVLKDTTWPTRKQSWVDFISVMEYTAFFVVIIYLFDLFVTRGLVRLLNIF*	mmseqs_cdd	nonviral_gene	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_CDS_0067	persistent	direct	high	176	0.994	GCA_000234035.1_01651
GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote	cenote	tRNA	147427	147498	GCA_000234035.1	JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035.1_JH376756.1	GCA_000234035.1|JH376756.1	GCA_000234035_1_3	GCA_000234035_1_3@C9	11770	11841	tRNA-Cys	tRNA-Cys	+	312904	.	tRNAscan-SE score: 55.6	Cys	NA	tRNAscan-SE	.	C9	47684	135658	183342	GCA_000234035.1|JH376756.1@region_135659_183342@tool_cenote_tRNA_0001	.	.	.	.	.	.