core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_000242295.1|JH591072.1@region_144503_165694@tool_cenote	cenote	CDS	144502	144831	GCA_000242295.1	JH591072.1	GCA_000242295.1|JH591072.1	GCA_000242295.1_JH591072.1	GCA_000242295.1|JH591072.1	GCA_000242295_1_8	GCA_000242295_1_8@C9	1	330	GCA_000242295_1_8_138	GCA_000242295_1_8_138	+	173781	.	TIGR00103	DNA-binding protein, YbaB/EbfC family. The function of this protein is unknown, but it has been expressed and crystallized. Its gene nearly always occurs next to recR and/or dnaX. It is restricted to Bacteria and the plant Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A member is present even in the minimal gene complement of Mycoplasm genitalium. [Unknown function, General]	MFGKGGLGGLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKITINGAHNCRRIDIDPSLMEDDKEMLEDLIAAAFNDAVRRAEELQKEKMASVTAGMPLPPGMKFPF*	mmseqs_cdd	nonviral_gene	C9	21192	144502	165694	GCA_000242295.1|JH591072.1@region_144503_165694@tool_cenote_CDS_0001	persistent	direct	high	329	0.997	GCA_000242295.1_00626
GCA_000242295.1|JH591072.1@region_144503_165694@tool_cenote	cenote	CDS	144894	145496	GCA_000242295.1	JH591072.1	GCA_000242295.1|JH591072.1	GCA_000242295.1_JH591072.1	GCA_000242295.1|JH591072.1	GCA_000242295_1_8	GCA_000242295_1_8@C9	393	995	GCA_000242295_1_8_139	GCA_000242295_1_8_139	+	173781	.	COG0353	Recombinational DNA repair protein RecR [Replication, recombination and repair]. 	MQSSPLLEHLIENLRCLPGVGPKSAQRMAYHLLQRNRSGGMNLARALTEAMSKIGHCSQCRDFTEEDTCNICNNPRRQNSGLLCVVEMPADIQAIEQTGQFSGRYFVLMGHLSPLDGIGPREIGLDLLQKRLVEESFHEVILATNPTVEGDATANYIAEMCRQHNIKVSRIAHGIPVGGELETVDGTTLTHSFLGRRQID*	mmseqs_cdd	nonviral_gene	C9	21192	144502	165694	GCA_000242295.1|JH591072.1@region_144503_165694@tool_cenote_CDS_0002	persistent	direct	high	602	0.998	GCA_000242295.1_00627
GCA_000242295.1|JH591072.1@region_144503_165694@tool_cenote	cenote	CDS	145512	147467	GCA_000242295.1	JH591072.1	GCA_000242295.1|JH591072.1	GCA_000242295.1_JH591072.1	GCA_000242295.1|JH591072.1	GCA_000242295_1_8	GCA_000242295_1_8@C9	1011	2966	GCA_000242295_1_8_140	GCA_000242295_1_8_140	+	173781	.	PDB:5D5H_A	DNA-topoisomerase-1	MRLFIAEKPSLARAIADVLPNPHQRGDGFIKCGDNDVVTWCVGHLLEQAEPDAYDPKFKQWRLEHLPIIPEKWQLLPRKEVKKQLSVVEKLIHQADTLVNAGDPDREGQLLVDEVFSYANLSAEKRDKILRCLISDLNPSAVEKAVKKLQPNRNFIPLATSALARARADWLYGINMTRAYTIRGRQTGYDGVLSVGRVQTPVLGLIVRRDLEIEHFQPKDFFEVLAWINPENKEEKTQEKSTALFSALWQPSKACEDYQDDDGRVLSKGLAENVVKRITNQSAEVTEYKDVREKETAPLPYSLSALQIDAAKRFGMSAQAVLDTCQRLYETHRLITYPRSDCRYLPEEHFAERHNVLNAISSHCEAYQVLPNVISTEQRNRCWNDKKVEAHHAIIPTAKNRPVNLTQEERNIYSLIARQYLMQFCPDAEYRKSKITLNIAGGTFIAQARNLQTAGWKELLGKEDDTENQEPLLPIVKKGQILHCERGEVISKKTQPPKPFTDATLLSAMTGIARFVQDKDLKKILRETDGLGTEATRAGIIELLFKRGFLTKKGRNIHSTETGRILIQALPDIATQPDMTAHWESQLTDISQKQATYQQFMHNLNQMLPDLVRFVDLNALRQLSRIKMIKSDRAKPKNAVKKSSKSNNRTD*	common_virus_hmm	common_virus	C9	21192	144502	165694	GCA_000242295.1|JH591072.1@region_144503_165694@tool_cenote_CDS_0003	persistent	direct	high	1955	0.999	GCA_000242295.1_00628
GCA_000242295.1|JH591072.1@region_144503_165694@tool_cenote	cenote	CDS	147576	147917	GCA_000242295.1	JH591072.1	GCA_000242295.1|JH591072.1	GCA_000242295.1_JH591072.1	GCA_000242295.1|JH591072.1	GCA_000242295_1_8	GCA_000242295_1_8@C9	3075	3416	GCA_000242295_1_8_141	GCA_000242295_1_8_141	+	173781	.	COG1314	Preprotein translocase subunit SecG [Intracellular trafficking, secretion, and vesicular transport]. 	MYQVLLFIYVVVAIALIGFILVQQGKGANAGASFGGGASGTMFGSAGAGNFLTRTSAILATAFFVIALVLGNMNSHKGNIQKGAFDDLSQAAEQIQQQQTAPAKENKNSDIPQ*	mmseqs_cdd	nonviral_gene	C9	21192	144502	165694	GCA_000242295.1|JH591072.1@region_144503_165694@tool_cenote_CDS_0004	persistent	direct	high	341	0.997	GCA_000242295.1_00629
GCA_000242295.1|JH591072.1@region_144503_165694@tool_cenote	cenote	CDS	148216	149442	GCA_000242295.1	JH591072.1	GCA_000242295.1|JH591072.1	GCA_000242295.1_JH591072.1	GCA_000242295.1|JH591072.1	GCA_000242295_1_8	GCA_000242295_1_8@C9	3715	4941	GCA_000242295_1_8_142	GCA_000242295_1_8_142	+	173781	.	PDB:1Z19_B	Integrase	MARIVKPLSPTEIKNAKPKEKEYTLSDGEGLLLLILPSGSKSWRFNYARPVTGKRTKMALGGYPELSLADARAKREEYRALLAKGIDPQEEKIRIQQEYENRLKDTFHSVAESYFNGIYKEKAKNPETREKNWERLKNHIFPYIGDKHVSEIKVKELVSIYEKIADRSNTLKKIHQLVSAIMDHAITKGIIESHNCRLAVKNFYIKSSTPHPTIKLDELSKLFQDLENARIGKKTYLLICWSFLTALRPKEAVNAEWSEIDFDNKLWNIPKEKMKGQADKKRPHTVPLSSQAIRLLEVMKLFSENSSFVFAGRSSKNQPMNKATVNVALKRIGYKDKLTAHGIRAFIKTFLASHKVERNVSETILSHLLEGGDDLENTYNRYNYLEERKPVMQLIGDYCESCGMNLNL*	common_virus_hmm	common_virus	C9	21192	144502	165694	GCA_000242295.1|JH591072.1@region_144503_165694@tool_cenote_CDS_0005	shell	direct	high	1226	0.999	GCA_000242295.1_00631
GCA_000242295.1|JH591072.1@region_144503_165694@tool_cenote	cenote	CDS	149635	151410	GCA_000242295.1	JH591072.1	GCA_000242295.1|JH591072.1	GCA_000242295.1_JH591072.1	GCA_000242295.1|JH591072.1	GCA_000242295_1_8	GCA_000242295_1_8@C9	5134	6909	GCA_000242295_1_8_143	GCA_000242295_1_8_143	-	173781	.	PFAM:PF04735.11	DNA-helicase	MAKLINAPHLADQIHEPYSDVFILAGRKAWQAWDNGKGEEWLLLCSLIHGLDRNIKPVILAENQLESISSIRIVKEDQQSVKLVQYGELAQAEITAICQNLAKNSDAIDVKLLDSTAQTKEDLSAYIQRLRNDKETADLAEKLAPPEKVKDSDWADKKARALSKYLGFDFGYIPLTKETLTYNGISWDRYDEGNLISGAVRFFEENNLRYNANSIELTVKTLKIQSTILGSPKQGLLAFKNGVLDRKTLEFSEHSKENWLLSHIPHDYINKRQPTPNFDKWLDWVSDGNQSKQNAILAAFYMILTNRYNWQMYLEVTGHGGSGKSVFAKLAKMLVGEQNISAASLEDFEDPKEMDGFEDKLLLICSEQQAYGGKGSGLKRVTGGDDVRIDKKYISRFTTVIPAVILVVNNEPTKFTDRTGAIERRRVIFSFDKIIPEKDRDPDLMDKIASEISAIIYKIIHSFKHPSDAKQLLEQQQKSDEALKIKINSDHITLFCSYFYTTEEENGLGIGNAKMRSRFRTHLYPAYLEFVDALNHEYPISYNNFTRAIKQGLIQNRNPIAFKSKKSTGGVFKTNVHFKNFDEFFNEYLQK*	rep_hall_hmm	common_virus	C9	21192	144502	165694	GCA_000242295.1|JH591072.1@region_144503_165694@tool_cenote_CDS_0006	cloud	direct	high	1775	0.999	GCA_000242295.1_00632
GCA_000242295.1|JH591072.1@region_144503_165694@tool_cenote	cenote	CDS	151398	151790	GCA_000242295.1	JH591072.1	GCA_000242295.1|JH591072.1	GCA_000242295.1_JH591072.1	GCA_000242295.1|JH591072.1	GCA_000242295_1_8	GCA_000242295_1_8@C9	6897	7289	GCA_000242295_1_8_144	GCA_000242295_1_8_144	-	173781	.	.	hypothetical protein	MSKTAFILTAGFHVIDDLFMLTVVAMRETKGDILSLHRAYARQGKLTNVRAINLNHYTLEFVLGNARAPIIHAEGKRERAEVEKWVGHFQILYPTAQIRVIQFKDAFLFKQCAGIGLGIDAEQGGKKWLN*	.	hypothetical_protein	C9	21192	144502	165694	GCA_000242295.1|JH591072.1@region_144503_165694@tool_cenote_CDS_0007	cloud	direct	high	392	0.997	GCA_000242295.1_00633
GCA_000242295.1|JH591072.1@region_144503_165694@tool_cenote	cenote	CDS	151783	152322	GCA_000242295.1	JH591072.1	GCA_000242295.1|JH591072.1	GCA_000242295.1_JH591072.1	GCA_000242295.1|JH591072.1	GCA_000242295_1_8	GCA_000242295_1_8@C9	7282	7821	GCA_000242295_1_8_145	GCA_000242295_1_8_145	-	173781	.	.	hypothetical protein	MKPSNPMQQLQQWKANNGKSSERKNASAKSAVKNSSNLKFEETSKTQQETQGETKNKYQGKLYANPLAFKFAQLTRQFKLILDSNRKCLEVYPDDFHHKLKMRDEMVDLIGRLKAGGKLLNALAKSQGITFCRDNQSTLKDFNQANGYLIHKFGEVVAQIERLNIERIEGEKLQGVSNE*	.	hypothetical_protein	C9	21192	144502	165694	GCA_000242295.1|JH591072.1@region_144503_165694@tool_cenote_CDS_0008	shell	direct	high	539	0.998	GCA_000242295.1_00634
GCA_000242295.1|JH591072.1@region_144503_165694@tool_cenote	cenote	CDS	152309	152515	GCA_000242295.1	JH591072.1	GCA_000242295.1|JH591072.1	GCA_000242295.1_JH591072.1	GCA_000242295.1|JH591072.1	GCA_000242295_1_8	GCA_000242295_1_8@C9	7808	8014	GCA_000242295_1_8_146	GCA_000242295_1_8_146	-	173781	.	.	hypothetical protein	MKAKKIKAFKAPYTPTPEQLEKSYKRIKQFLAFAEDYLHSGHYKGLAASIEQIKKAATIRKVAQHETK*	.	hypothetical_protein	C9	21192	144502	165694	GCA_000242295.1|JH591072.1@region_144503_165694@tool_cenote_CDS_0009	shell	direct	high	206	0.995	GCA_000242295.1_00635
GCA_000242295.1|JH591072.1@region_144503_165694@tool_cenote	cenote	CDS	152505	152705	GCA_000242295.1	JH591072.1	GCA_000242295.1|JH591072.1	GCA_000242295.1_JH591072.1	GCA_000242295.1|JH591072.1	GCA_000242295_1_8	GCA_000242295_1_8@C9	8004	8204	GCA_000242295_1_8_147	GCA_000242295_1_8_147	-	173781	.	.	hypothetical protein	MMIKPNLPYQLIFVYDDGEQFIAGKYGTLRDALQAKIRCKHEIGQADICGRVLEVISVLKGEDNES*	.	hypothetical_protein	C9	21192	144502	165694	GCA_000242295.1|JH591072.1@region_144503_165694@tool_cenote_CDS_0010	shell	direct	high	200	0.995	GCA_000242295.1_00636
GCA_000242295.1|JH591072.1@region_144503_165694@tool_cenote	cenote	CDS	152695	153066	GCA_000242295.1	JH591072.1	GCA_000242295.1|JH591072.1	GCA_000242295.1_JH591072.1	GCA_000242295.1|JH591072.1	GCA_000242295_1_8	GCA_000242295_1_8@C9	8194	8565	GCA_000242295_1_8_148	GCA_000242295_1_8_148	-	173781	.	.	hypothetical protein	MLNQSILSALQEMAEFNDINNYKQIPVPISKEKLTDLCNESEMLCESIEYGLMHLGDLMQTLGNLADTEQDFTREAMSNDNVKHIGGLIKANAYLLNALRETASLSEYYLAGGLDGEIERNDD*	.	hypothetical_protein	C9	21192	144502	165694	GCA_000242295.1|JH591072.1@region_144503_165694@tool_cenote_CDS_0011	cloud	direct	high	371	0.997	GCA_000242295.1_00637
GCA_000242295.1|JH591072.1@region_144503_165694@tool_cenote	cenote	CDS	153059	153646	GCA_000242295.1	JH591072.1	GCA_000242295.1|JH591072.1	GCA_000242295.1_JH591072.1	GCA_000242295.1|JH591072.1	GCA_000242295_1_8	GCA_000242295_1_8@C9	8558	9145	GCA_000242295_1_8_149	GCA_000242295_1_8_149	-	173781	.	PF10554.9	Ash protein family	MGGYKTILSEIFIKNTLQSAVKFGIIFSQSEKVIASRGKLNYLTLANDSTPLNRAFFVRDIRTPKEYADFVFNLNPIILSMVERNEQSLTGCLPKLAVFHLVTLYRPTVESLAVVPENLTLELTQMYQFIFALIRAPQIKIRLLADNEQQARSRFTDSDTLLFVGRINQNPLKNNRTLAALPTLSLSAAQGGANA*	hhsuite_tools	hypothetical_protein	C9	21192	144502	165694	GCA_000242295.1|JH591072.1@region_144503_165694@tool_cenote_CDS_0012	cloud	direct	high	587	0.998	GCA_000242295.1_00638
GCA_000242295.1|JH591072.1@region_144503_165694@tool_cenote	cenote	CDS	153741	153962	GCA_000242295.1	JH591072.1	GCA_000242295.1|JH591072.1	GCA_000242295.1_JH591072.1	GCA_000242295.1|JH591072.1	GCA_000242295_1_8	GCA_000242295_1_8@C9	9240	9461	GCA_000242295_1_8_150	GCA_000242295_1_8_150	-	173781	.	COG3311	Predicted DNA-binding transcriptional regulator AlpA [Transcription, Mobilome: prophages, transposons]. 	MNEAQKLNLKLNPQQKLISGETACHIVGFGRTKLNELVKAKKFPQPIRFSQNFVRWDLEEVNQWIEEQKAARA*	mmseqs_cdd	nonviral_gene	C9	21192	144502	165694	GCA_000242295.1|JH591072.1@region_144503_165694@tool_cenote_CDS_0013	shell	direct	high	221	0.995	GCA_000242295.1_00640
GCA_000242295.1|JH591072.1@region_144503_165694@tool_cenote	cenote	CDS	154162	155136	GCA_000242295.1	JH591072.1	GCA_000242295.1|JH591072.1	GCA_000242295.1_JH591072.1	GCA_000242295.1|JH591072.1	GCA_000242295_1_8	GCA_000242295_1_8@C9	9661	10635	GCA_000242295_1_8_151	GCA_000242295_1_8_151	-	173781	.	.	hypothetical protein	MKIKIPSKNVYSLKESLEYLSRIDGDHGLTIKDLLDFAYEGKLRTVIFLTGGRDFETSENNCRAKLFTLNNKQLDSVYYIKNESIEVNYDEIEISEVKKPLNHKEVKECEVGNSQLLNVYFQQIVKSNRLMSRYPYEKITLIKSDSERELLDNVEGFNFLGYFKIENSLYYGDREKIIDDGFIIKDFMSLFESIVENGTKLSFKLEAKKEKMLYIYAYPDLKISLDDIFILHDDLAKCFGLFKDNESEPLKEERLKQHLEYEGDLPEKTNADKLAEFIELIINPTLLENGKLPTYSKLYSKLDHTYRGKRSIPAKNTIKKYLNQ*	.	hypothetical_protein	C9	21192	144502	165694	GCA_000242295.1|JH591072.1@region_144503_165694@tool_cenote_CDS_0014	cloud	direct	high	974	0.999	GCA_000242295.1_00641
GCA_000242295.1|JH591072.1@region_144503_165694@tool_cenote	cenote	CDS	155236	155619	GCA_000242295.1	JH591072.1	GCA_000242295.1|JH591072.1	GCA_000242295.1_JH591072.1	GCA_000242295.1|JH591072.1	GCA_000242295_1_8	GCA_000242295_1_8@C9	10735	11118	GCA_000242295_1_8_152	GCA_000242295_1_8_152	-	173781	.	.	hypothetical protein	MIKSVLSAFGSFVFSALDFLLFLAILLFVSLLVFIFWPILKWPLLAFLIGAIAFFCYLIYKIKEKPKPLEQDETLSSWAEQELQRPIIQRILQKQEENKPFISGTITHIGNDRKETRLGNITIHLKE*	.	hypothetical_protein	C9	21192	144502	165694	GCA_000242295.1|JH591072.1@region_144503_165694@tool_cenote_CDS_0015	shell	direct	high	383	0.997	GCA_000242295.1_00643
GCA_000242295.1|JH591072.1@region_144503_165694@tool_cenote	cenote	CDS	155869	156648	GCA_000242295.1	JH591072.1	GCA_000242295.1|JH591072.1	GCA_000242295.1_JH591072.1	GCA_000242295.1|JH591072.1	GCA_000242295_1_8	GCA_000242295_1_8@C9	11368	12147	GCA_000242295_1_8_153	GCA_000242295_1_8_153	-	173781	.	.	hypothetical protein	MESLSILVIAITGFLYVNLSLITRYKFKRSTDWSAYLYVVGWGIIFFFAAWLITLLLSSFGCLRLIYDWLSSRINLSGAVMATSNLEEKKNLLKFIFVCVLSIFLASLMGYTNRVYYDSRRSKDKKLKALSKIISNNPLESLALEAHLGTNPVLVTLSSNKVYVGVLNSLPGLEEGRLEYLSLFPLLSGYRDTNSLEVNFTTNYYDHYQKLLDDGNNSSSNTAYFNVTFAISEISIISLFDMDTYDRFQNAKNKIKLIL*	.	hypothetical_protein	C9	21192	144502	165694	GCA_000242295.1|JH591072.1@region_144503_165694@tool_cenote_CDS_0016	cloud	direct	high	779	0.999	GCA_000242295.1_00644
GCA_000242295.1|JH591072.1@region_144503_165694@tool_cenote	cenote	CDS	156651	156833	GCA_000242295.1	JH591072.1	GCA_000242295.1|JH591072.1	GCA_000242295.1_JH591072.1	GCA_000242295.1|JH591072.1	GCA_000242295_1_8	GCA_000242295_1_8@C9	12150	12332	GCA_000242295_1_8_154	GCA_000242295_1_8_154	-	173781	.	.	hypothetical protein	MTTAQLACLMQEDRLYRALKDNKDNYTINSKGQVTLKPDYVKKELDKVLKKLKDIDVQVR*	.	hypothetical_protein	C9	21192	144502	165694	GCA_000242295.1|JH591072.1@region_144503_165694@tool_cenote_CDS_0017	cloud	direct	high	182	0.995	GCA_000242295.1_00645
GCA_000242295.1|JH591072.1@region_144503_165694@tool_cenote	cenote	CDS	156970	158637	GCA_000242295.1	JH591072.1	GCA_000242295.1|JH591072.1	GCA_000242295.1_JH591072.1	GCA_000242295.1|JH591072.1	GCA_000242295_1_8	GCA_000242295_1_8@C9	12469	14136	GCA_000242295_1_8_155	GCA_000242295_1_8_155	-	173781	.	CDD:COG4626	Large-Terminase	MAIWHAYAEKIQSGEIVACKKIKQAVARYFNDLNNPDYFFDQSAVEKFIAFSKLCPHVKGHLRGEPIILSDWQVFLFANILGFKRKDTGLRKYRSAYVQVARKNAKSTVAAVLANWFLVMEGGQQDIYTAAVSRDQARIVFDDARQMCLLSPLLKKRLNIQQHKLINPKNNSIMRPLAAKSSTIEGTNPSLAIVDEYHLHTDNSVYSALELGQGARPEGLLFAITTAGSNVISACKQHYDYCAQILEGNKQNDSLFVLIFELDEESEIDKQENWIKANPNIGKSIPYLDFENTIKKARGIPSEWVEMLTKRFNVWCQGTTPWLGEGNWAQCERQYTESDLLHQDCYLGLDLSSTNDLTSLCYTFPQGKKVRLVTRHYIPEFQLNNVANKNRAMYRNWVRSGWLIATEGDCIDYDKIRDDILKDAQRFNIKMIGFDVWNATHLRTQLQAAGLEVEPFPQTYQRFSPVAKSAEVLINRQMIEHHGDPVLTWALSNVVMETDANANIKPNKNKAANKIDPAVAFLMSFGTYQLEYGDLIFELSDEHKQALEQFNGIDL*	hallmark_hmm	common_virus	C9	21192	144502	165694	GCA_000242295.1|JH591072.1@region_144503_165694@tool_cenote_CDS_0018	shell	direct	high	1667	0.999	GCA_000242295.1_00646
GCA_000242295.1|JH591072.1@region_144503_165694@tool_cenote	cenote	CDS	158645	159019	GCA_000242295.1	JH591072.1	GCA_000242295.1|JH591072.1	GCA_000242295.1_JH591072.1	GCA_000242295.1|JH591072.1	GCA_000242295_1_8	GCA_000242295_1_8@C9	14144	14518	GCA_000242295_1_8_156	GCA_000242295_1_8_156	-	173781	.	CDD:COG3747	Small-Terminase	MTAKKKNLHTPPSFLDPIAKSVWKERIPQLLERGDIQDADLIHLELYCVNYSLFRAAVEDIHKNGFSIVNSQGTQSRNPALSAKADAEKVMVKMSSLLGFDPVSRRKNPVEVDSTDMIDEILTM*	hallmark_hmm	common_virus	C9	21192	144502	165694	GCA_000242295.1|JH591072.1@region_144503_165694@tool_cenote_CDS_0019	shell	direct	high	374	0.997	GCA_000242295.1_00647
GCA_000242295.1|JH591072.1@region_144503_165694@tool_cenote	cenote	CDS	159249	159605	GCA_000242295.1	JH591072.1	GCA_000242295.1|JH591072.1	GCA_000242295.1_JH591072.1	GCA_000242295.1|JH591072.1	GCA_000242295_1_8	GCA_000242295_1_8@C9	14748	15104	GCA_000242295_1_8_157	GCA_000242295_1_8_157	-	173781	.	PDB:5H0M_A	HNH-endonuclease	MPYQPLRRCSYPGCRNKVKSGRCEEHKPKDNRPSSRARGYDHKWSKYRAQYLKHHPLCVMCLEKGIYTPATVIDHIKPVENGQAAPLFWVESNHQSLCRDCHSYKTRVIDQRGFGAKK*	common_virus_hmm	common_virus	C9	21192	144502	165694	GCA_000242295.1|JH591072.1@region_144503_165694@tool_cenote_CDS_0020	.	unmatched_CDS	none	0	0	.
GCA_000242295.1|JH591072.1@region_144503_165694@tool_cenote	cenote	CDS	159616	159930	GCA_000242295.1	JH591072.1	GCA_000242295.1|JH591072.1	GCA_000242295.1_JH591072.1	GCA_000242295.1|JH591072.1	GCA_000242295_1_8	GCA_000242295_1_8@C9	15115	15429	GCA_000242295_1_8_158	GCA_000242295_1_8_158	-	173781	.	CDD:TIGR01560	uncharacterized-phage-protein-(possible-DNA-packaging)	MANINLTIDDIKAHLNLDHDLDDELLETYKVATLEVCQKHIGKIFGDEETENTVPFTPSIKVGCLMYIAYLYTNREAITDLANLKQAPMTISALWEVYREPCAY*	hallmark_hmm	common_virus	C9	21192	144502	165694	GCA_000242295.1|JH591072.1@region_144503_165694@tool_cenote_CDS_0021	shell	direct	high	314	0.997	GCA_000242295.1_00648
GCA_000242295.1|JH591072.1@region_144503_165694@tool_cenote	cenote	CDS	159917	160273	GCA_000242295.1	JH591072.1	GCA_000242295.1|JH591072.1	GCA_000242295.1_JH591072.1	GCA_000242295.1|JH591072.1	GCA_000242295_1_8	GCA_000242295_1_8@C9	15416	15772	GCA_000242295_1_8_159	GCA_000242295_1_8_159	-	173781	.	PDB:2KZ4_A	Head-tail-adaptor	MAVMLKAGKYNKVITIEARNYPRERETNLHGEHKAFWKHIATVRASVEPLQGREYFSGPFQMGENIIRIRIRYIEGITNKMRIKYGKRLFDIYSVIDSMESHRELQLMCKEGEAYGEY*	hallmark_hmm	common_virus	C9	21192	144502	165694	GCA_000242295.1|JH591072.1@region_144503_165694@tool_cenote_CDS_0022	shell	direct	high	356	0.997	GCA_000242295.1_00649
GCA_000242295.1|JH591072.1@region_144503_165694@tool_cenote	cenote	CDS	160257	161489	GCA_000242295.1	JH591072.1	GCA_000242295.1|JH591072.1	GCA_000242295.1_JH591072.1	GCA_000242295.1|JH591072.1	GCA_000242295_1_8	GCA_000242295_1_8@C9	15756	16988	GCA_000242295_1_8_160	GCA_000242295_1_8_160	-	173781	.	CDD:COG4695	Portal-protein	MWNPFRRKEQRSEPTTIEELLSYMGVNNTGAGEFVSPQTAESLPAVMNAVTVISEAVASMPCYLYALKEDGRERIYRHPVEYLLNEMPNRSQTPYQFKNTMMRHCLLNGNAYAVIEWNNKGEPISLTPYQPSAVNIFRKVTGEYIYQITDLNGVTKNYLQDEILHLRHSSIDGFMGRSPITVCRETVGLGLAQQRHGAAIMKNGLMASGLISTAEWLDDAKAQKAVKALERYKGAKNAGKTPILEDSMEYKQLGMTNQDAEWLASRTFTISDIARIYNISPIFLQDYSNSSYSNFSEASRAFLSQTLRPWLTNFEQQLKDALMIDLGSNSNKRYLIEFDTSDLLRTSQSERFSSYDVAIKAGVMSPNEVRRREGLPPYEGGDEFSQAWKQTVEVKRGDEQEQGASDGSDA*	hallmark_hmm	common_virus	C9	21192	144502	165694	GCA_000242295.1|JH591072.1@region_144503_165694@tool_cenote_CDS_0023	shell	direct	high	1232	0.999	GCA_000242295.1_00650
GCA_000242295.1|JH591072.1@region_144503_165694@tool_cenote	cenote	CDS	161491	162057	GCA_000242295.1	JH591072.1	GCA_000242295.1|JH591072.1	GCA_000242295.1_JH591072.1	GCA_000242295.1|JH591072.1	GCA_000242295_1_8	GCA_000242295_1_8@C9	16990	17556	GCA_000242295_1_8_161	GCA_000242295_1_8_161	-	173781	.	CDD:COG3740	head-maturation-protease	MKKEFEIRSATISTDEENQKLVGYAVKWNSLSQVLYCDFVESFAPKAFSESLASGEDVRALFEHDYTKLLGRTSSGTLKLEEDSIGLRFELTPPDTTLGRDLLVSVARGDITGMSFGFIASQEEWNFDVEPCQRTAKKAELFEVTVTSIPAYPESSVEIAKRSMVAAKEKTQEHSTALLKQWLDVMEA*	hallmark_hmm	common_virus	C9	21192	144502	165694	GCA_000242295.1|JH591072.1@region_144503_165694@tool_cenote_CDS_0024	shell	direct	high	566	0.998	GCA_000242295.1_00651
GCA_000242295.1|JH591072.1@region_144503_165694@tool_cenote	cenote	CDS	162102	163292	GCA_000242295.1	JH591072.1	GCA_000242295.1|JH591072.1	GCA_000242295.1_JH591072.1	GCA_000242295.1|JH591072.1	GCA_000242295_1_8	GCA_000242295_1_8@C9	17601	18791	GCA_000242295_1_8_162	GCA_000242295_1_8_162	-	173781	.	CDD:COG4653	Major-Capsid-protein	MLKKLIELRQQKAEKVAEMRAMLDKAEKENRSLDETESVDFDKLKDLVKQLSDEISKYETVADEERNLGAQSNPLETRSTKQFSNDELRHYVKTGELRNLTTGNGEDGGYSVIPQLDKDVMKRLTDDSVMRQLCNVVRLPVGAKEYKKLVSAGGAAVEHGTEGTARNGTASPKLHEVTIALNSIYAYPKTTQEILDFSSIDVLGWLTDEITETFTETEEVDLTSGDGNKKSKGLLTYERTTENDKVRPFGKLQKIEVAGAAKIEADTLIDAFYTLHSKYRKNAVWVMSSTIAAALQKLKNKNGDYIWRDGLTTDAPATLLGRPVYFLETMPTGGANQAVIAFGDFKRGYFIVDHETGVRTRPDNLTEPGFYKVHTDKYLGGGVVDSNAIKMIETTA*	hallmark_hmm	common_virus	C9	21192	144502	165694	GCA_000242295.1|JH591072.1@region_144503_165694@tool_cenote_CDS_0025	shell	direct	high	1190	0.999	GCA_000242295.1_00652
GCA_000242295.1|JH591072.1@region_144503_165694@tool_cenote	cenote	CDS	164199	164399	GCA_000242295.1	JH591072.1	GCA_000242295.1|JH591072.1	GCA_000242295.1_JH591072.1	GCA_000242295.1|JH591072.1	GCA_000242295_1_8	GCA_000242295_1_8@C9	19698	19898	GCA_000242295_1_8_163	GCA_000242295_1_8_163	-	173781	.	.	hypothetical protein	MANNDNASIAQSVEQGIENPRVGGSIPPRGTISSLVQSVERWTVNPYVAGSSPAGGAKFRKAAKEI*	.	hypothetical_protein	C9	21192	144502	165694	GCA_000242295.1|JH591072.1@region_144503_165694@tool_cenote_CDS_0026	.	unmatched_CDS	none	0	0	.
GCA_000242295.1|JH591072.1@region_144503_165694@tool_cenote	cenote	CDS	164617	165693	GCA_000242295.1	JH591072.1	GCA_000242295.1|JH591072.1	GCA_000242295.1_JH591072.1	GCA_000242295.1|JH591072.1	GCA_000242295_1_8	GCA_000242295_1_8@C9	20116	21192	GCA_000242295_1_8_164	GCA_000242295_1_8_164	-	173781	.	PRK11671	membrane-bound lytic murein transglycosylase MltC. 	MKKYLVLALLPLLYACSDSLNRGGMNYDESFAKDTQGLDILTGQFSHNIDRIWGVNELLVASRKDYVKYTDSFYTRSHVSFDEGNIVIETQQDLNRLHNAIVHTLLMGADAKGIDLFASGDVPISSRPFLLGQVVDHQGQQIANQVIASNFATYLIQNKLQTRRLQNGHTVQFVAIPMIANHVEVRAQKYLPLVRKAAERYGIDESLILGIMQTESSFNPYAISYANAIGLMQVVPHTAGRDVFAMKGKSGQPSTRYLYDPANNIDAGVSYLWILQNQYLDGITNPTSKRFAMISAYNSGAGAVLRVFDNDKDMAIYKINQMYPEQVYRILTTAHPSSQARNYLLKVDKAQKKFRVRR*	mmseqs_cdd	nonviral_gene	C9	21192	144502	165694	GCA_000242295.1|JH591072.1@region_144503_165694@tool_cenote_CDS_0027	persistent	direct	high	1076	0.999	GCA_000242295.1_00655
GCA_000242295.1|JH591072.1@region_144503_165694@tool_cenote	cenote	tRNA	147943	148028	GCA_000242295.1	JH591072.1	GCA_000242295.1|JH591072.1	GCA_000242295.1_JH591072.1	GCA_000242295.1|JH591072.1	GCA_000242295_1_8	GCA_000242295_1_8@C9	3442	3527	tRNA-Leu	tRNA-Leu	+	173781	.	tRNAscan-SE score: 57.5	Leu	NA	tRNAscan-SE	.	C9	21192	144502	165694	GCA_000242295.1|JH591072.1@region_144503_165694@tool_cenote_tRNA_0001	.	.	.	.	.	.
GCA_000242295.1|JH591072.1@region_144503_165694@tool_cenote	cenote	tRNA	164309	164381	GCA_000242295.1	JH591072.1	GCA_000242295.1|JH591072.1	GCA_000242295.1_JH591072.1	GCA_000242295.1|JH591072.1	GCA_000242295_1_8	GCA_000242295_1_8@C9	19808	19880	tRNA-Phe	tRNA-Phe	-	173781	.	tRNAscan-SE score: 76.9	Phe	NA	tRNAscan-SE	.	C9	21192	144502	165694	GCA_000242295.1|JH591072.1@region_144503_165694@tool_cenote_tRNA_0003	.	.	.	.	.	.
GCA_000242295.1|JH591072.1@region_144503_165694@tool_cenote	cenote	tRNA	164231	164303	GCA_000242295.1	JH591072.1	GCA_000242295.1|JH591072.1	GCA_000242295.1_JH591072.1	GCA_000242295.1|JH591072.1	GCA_000242295_1_8	GCA_000242295_1_8@C9	19730	19802	tRNA-Asn	tRNA-Asn	-	173781	.	tRNAscan-SE score: 72.6	Asn	NA	tRNAscan-SE	.	C9	21192	144502	165694	GCA_000242295.1|JH591072.1@region_144503_165694@tool_cenote_tRNA_0002	.	.	.	.	.	.