core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_000292225.1|ALOX01000028.1@region_23249_28555@tool_cenote	cenote	CDS	23248	23895	GCA_000292225.1	ALOX01000028.1	GCA_000292225.1|ALOX01000028.1	GCA_000292225.1_ALOX01000028.1	GCA_000292225.1|ALOX01000028.1	GCA_000292225_1_28	GCA_000292225_1_28@C3	1	648	GCA_000292225_1_28_22	GCA_000292225_1_28_22	-	28554	.	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptidase s24 domains [Mobilome: prophages, transposons]. 	MQHYDIWRAIDALAAENGLSASGLARKAGLDPTAFNPSKRTGPDGRARWPSTESVAKVLEATGTSLDAFASLVSGTPMNFRSAAVRPVRRIPLIGLAQAGSAGYFDDGGFPSGAGWDEISVPEIPDPNAYALEISGDSMEPVFRDGDTIIVSPAAPIRRGDRVVVRTRGGEVMAKELLRQSARKIELASLNPAHPNYSFDLAEITWMHRIVWASQ*	mmseqs_cdd	common_virus	C3	5307	23248	28555	GCA_000292225.1|ALOX01000028.1@region_23249_28555@tool_cenote_CDS_0001	persistent	direct	high	647	0.998	GCA_000292225.1_01529
GCA_000292225.1|ALOX01000028.1@region_23249_28555@tool_cenote	cenote	CDS	24021	24461	GCA_000292225.1	ALOX01000028.1	GCA_000292225.1|ALOX01000028.1	GCA_000292225.1_ALOX01000028.1	GCA_000292225.1|ALOX01000028.1	GCA_000292225_1_28	GCA_000292225_1_28@C3	774	1214	GCA_000292225_1_28_23	GCA_000292225_1_28_23	+	28554	.	.	hypothetical protein	MTTAVSDSRIPPRRFSVPKTEPFRHAEEAWFWTMSALIARRDGARIVAGRGQVQRPCEPDDVVKCLDRLYRQRRIDLAHARILRIWGERGQAPDPRSAREKHDHRLWREALERLEWPLRVKGIVAGEAGSPGGGGEVVHLDELSRS*	.	hypothetical_protein	C3	5307	23248	28555	GCA_000292225.1|ALOX01000028.1@region_23249_28555@tool_cenote_CDS_0002	persistent	direct	high	440	0.998	GCA_000292225.1_01530
GCA_000292225.1|ALOX01000028.1@region_23249_28555@tool_cenote	cenote	CDS	25134	25373	GCA_000292225.1	ALOX01000028.1	GCA_000292225.1|ALOX01000028.1	GCA_000292225.1_ALOX01000028.1	GCA_000292225.1|ALOX01000028.1	GCA_000292225_1_28	GCA_000292225_1_28@C3	1887	2126	GCA_000292225_1_28_24	GCA_000292225_1_28_24	+	28554	.	.	hypothetical protein	MGGLFSVPKPVVVATPVLPQQAAADASAGAANAATTEARQDGAERRRRGLAGTIATSERGVLSPLPALPAAARKTLLGE*	.	hypothetical_protein	C3	5307	23248	28555	GCA_000292225.1|ALOX01000028.1@region_23249_28555@tool_cenote_CDS_0003	persistent	direct	high	239	0.996	GCA_000292225.1_01531
GCA_000292225.1|ALOX01000028.1@region_23249_28555@tool_cenote	cenote	CDS	25378	26880	GCA_000292225.1	ALOX01000028.1	GCA_000292225.1|ALOX01000028.1	GCA_000292225.1_ALOX01000028.1	GCA_000292225.1|ALOX01000028.1	GCA_000292225_1_28	GCA_000292225_1_28@C3	2131	3633	GCA_000292225_1_28_25	GCA_000292225_1_28_25	+	28554	.	CDD:pfam12236	Head-Tail-Connector-protein	MKPEEILQRHARALEARRPWEGVWRECYEHVLATVPGTGGPALFDGTAADAVEQLAASLLAELTPPWSRWFGLAPGRALTGQDGLAAEAQAAAEALEQAADTLQGHLDRSSFALEMHQAFLDLVVAGTGVLLVEEAAPGEASALRFQAVPLRECVLEEGPSGRLETVYRAARLDRAAVAARWPGADLPPAGAGEPDGRLRVVEAVWPDGTGYGFAAVLDGVDGQARMLARGRFARSPFIAFRWMKAPGESYGRGPVMRALPDIRTANKVVELVLKNASIAATGIWQADDDGVLNPATVRLVPGAIIPKAPGSSGLTPLAAPGNFDVSQLVLSDMRGRIRSALLADRLGPPQDARMTATEVLERSAQAARLLGATYGRLQAELLTPLIARCLSILRRRGEVPPILLDGHEASLSYQSPLARLQGRSDAANMLLFLQAVAALGPEATAQVDRPAAARHLAKILAAPAGILNAATAPSPSPLPSHPGSDPGAALGPVRAAIEE*	hallmark_hmm	common_virus	C3	5307	23248	28555	GCA_000292225.1|ALOX01000028.1@region_23249_28555@tool_cenote_CDS_0004	persistent	direct	high	1502	0.999	GCA_000292225.1_01532
GCA_000292225.1|ALOX01000028.1@region_23249_28555@tool_cenote	cenote	CDS	26889	27665	GCA_000292225.1	ALOX01000028.1	GCA_000292225.1|ALOX01000028.1	GCA_000292225.1_ALOX01000028.1	GCA_000292225.1|ALOX01000028.1	GCA_000292225_1_28	GCA_000292225_1_28@C3	3642	4418	GCA_000292225_1_28_26	GCA_000292225_1_28_26	+	28554	.	.	hypothetical protein	MTDSLLDAALAPGGDADTPDAAAVPGGAPGSAARPPEVPEKFWDAESGRVRLDSLLKSYRELERKLSQRLARPGPEAPEDEHRRFARLLGAPEAPDGYRIAERHALCCSDPEVNTRLHSAGFTQDQAQLVYDLAAEKLLPVIAEAAAQYEAQRQLDRLREEFGGEERFAQLSRQISAWGRANLPADVFEALSTTAEGVKALHAMMRKGEPAMARAAEAPEGMDEAGLRRMMRDPRYWRSREPEFVRRVTEGFRRLTGG*	.	hypothetical_protein	C3	5307	23248	28555	GCA_000292225.1|ALOX01000028.1@region_23249_28555@tool_cenote_CDS_0005	persistent	direct	high	776	0.999	GCA_000292225.1_01533
GCA_000292225.1|ALOX01000028.1@region_23249_28555@tool_cenote	cenote	CDS	28057	28551	GCA_000292225.1	ALOX01000028.1	GCA_000292225.1|ALOX01000028.1	GCA_000292225.1_ALOX01000028.1	GCA_000292225.1|ALOX01000028.1	GCA_000292225_1_28	GCA_000292225_1_28@C3	4810	5304	GCA_000292225_1_28_27	GCA_000292225_1_28_27	+	28554	.	PDB:7Y23_A	Major-Capsid-Protein	MGQIDAAFVKQFEAEVHEAYQRQGSKLRPTVRSKTGVRGASTVFPRVGKGTAAAKSRAGQVPLMNLDHATVECFLQDYYAGEWIDRLDEVKLSFDEQTVVAHAGAYALGRKTDELIIAALDTAAQTASGTGTGLTDADGLTLAKVLRAFEMLGAADVPDDGQRYA	hallmark_hmm	common_virus	C3	5307	23248	28555	GCA_000292225.1|ALOX01000028.1@region_23249_28555@tool_cenote_CDS_0006	.	unmatched_CDS	none	0	0	.
GCA_000292225.1|ALOX01000052.1@region_1_9380@tool_cenote	cenote	CDS	290	859	GCA_000292225.1	ALOX01000052.1	GCA_000292225.1|ALOX01000052.1	GCA_000292225.1_ALOX01000052.1	GCA_000292225.1|ALOX01000052.1	GCA_000292225_1_52	GCA_000292225_1_52@C0	291	860	GCA_000292225_1_52_1	GCA_000292225_1_52_1	+	71958	.	PDB:5MU4_D	Tail-tube-protein	MALSALVLCSRALLRIGAQPIASFGEGTAEAEVAASLYPAARDALLAAHPWSFATGQMVLPRLLDVPVADMAYAFQLPPRCLRVLSAGSGRRGRGLEYRLMERRLHADAPSVTLTYIFRPEEALFPPHFAQALVSRLAAEFCIPLTESTSRAELLQRLAGSDFRDARLADSQQATPRAIEDFPLISVRG*	hallmark_hmm	common_virus	C0	9380	0	9380	GCA_000292225.1|ALOX01000052.1@region_1_9380@tool_cenote_CDS_0001	persistent	direct	high	569	0.998	GCA_000292225.1_02311
GCA_000292225.1|ALOX01000052.1@region_1_9380@tool_cenote	cenote	CDS	863	2740	GCA_000292225.1	ALOX01000052.1	GCA_000292225.1|ALOX01000052.1	GCA_000292225.1_ALOX01000052.1	GCA_000292225.1|ALOX01000052.1	GCA_000292225_1_52	GCA_000292225_1_52@C0	864	2741	GCA_000292225_1_52_2	GCA_000292225_1_52_2	+	71958	.	PFAM:PF11134.7	Phage-stabilisation-protein	MPDSRRAKTSFTAGELAPEMLGRGDTRAFDNGARMLRNLILQPTGGVTRRPGLRHVAMLPGAARLVGFEFNTEQTYLLVFLDGRMLVFLGDEQVASASGPWTAAMLPQLAWTQSADTLLLLHPEMVTQRITRTSHTEWTVAEFNFTWMPYHRFAPEAVTLQASALEGQVTVAASAALFVAAHLGKQLRIAGRRLRIRSVTDARHVVADVEDRLTTTDATADWDESAFGAHGWPVSACFHQDRLVLGGSRDLPNRLWMSQSGDLGNFDLGSGLDDEAIEFGLLSDQVNAIRAVFPGRHLQVFTSGGEWMVTGAPLTPASIQILRQTRVGSVTGRMIPPIDVDGSTLFAGRSGTAIYEFAYTTVEDAYQAGDLALTAHHLVQDPLDTAYDQRRRLFHVVMGDGSLATLTLYRAEEITAWTRQETDGAFRAVAELEGAVWFAVERGGTLRLERFDDALCTDAALTGASDTVRTAWHGLEHLEGRDVSVVASGAPAGRFTVLRGAVTLPEATGTVEMGLPFTHRLVPMPVEALNAPGIAGAPQRLVSVTFRLLESKALAVDLGRGAQPVPLRRLDTALLDAPPPAFTGDVTLRALGWRKDALRPLWRIESDEPLPFTLLSVTTNTRTTD*	hallmark_hmm	common_virus	C0	9380	0	9380	GCA_000292225.1|ALOX01000052.1@region_1_9380@tool_cenote_CDS_0002	persistent	direct	high	1877	0.999	GCA_000292225.1_02312
GCA_000292225.1|ALOX01000052.1@region_1_9380@tool_cenote	cenote	CDS	2740	3180	GCA_000292225.1	ALOX01000052.1	GCA_000292225.1|ALOX01000052.1	GCA_000292225.1_ALOX01000052.1	GCA_000292225.1|ALOX01000052.1	GCA_000292225_1_52	GCA_000292225_1_52@C0	2741	3181	GCA_000292225_1_52_3	GCA_000292225_1_52_3	+	71958	.	.	hypothetical protein	MSQLAPVAGLVGTGLSIYSTVHQAQAQSAQVKTQNRQIQQQAAAQSQLAAAQQQQDTRARQDQLAGTLASIRARSAASGLDPNDGSAAAVAAGLQKDSAQDIAEDDAVRNARLAAGRRSLLNNDGSLTTWLRAGSSFAGAAKSLLG*	.	hypothetical_protein	C0	9380	0	9380	GCA_000292225.1|ALOX01000052.1@region_1_9380@tool_cenote_CDS_0003	persistent	direct	high	440	0.998	GCA_000292225.1_02313
GCA_000292225.1|ALOX01000052.1@region_1_9380@tool_cenote	cenote	CDS	3213	5564	GCA_000292225.1	ALOX01000052.1	GCA_000292225.1|ALOX01000052.1	GCA_000292225.1_ALOX01000052.1	GCA_000292225.1|ALOX01000052.1	GCA_000292225_1_52	GCA_000292225_1_52@C0	3214	5565	GCA_000292225_1_52_4	GCA_000292225_1_52_4	+	71958	.	PFAM:PF03906.13	tail-fibre-protein	MAEHIRIGDVAPRVHYMAAAGQNVFVYPFPIFDISDLEVRIDGLLVPSGYVVDGADGSSGGTVTFATPPGEGAQVLLRRRLTIARVTDFQPNGLLRAYTLDDELDRQTAALQEVSGDVANAIRLDPGEAAARLHLPLKTARANRVLGFDAVGDLAIFSREDATLSAPFPGGIPRSVEDKLAERLSARDFGATGDGVTDDGAALQAAMNAAAMGGKQLVIGEGSFRTTIPLVLPGGSPGLTMRGAILYDGPAGQVALTLGDGAGARNRSKVYRGLRVLRASIADWSDEADIGLLLRNLDASLVEIQQVEGFTIGARTSGEATGFEDSTLNLGRFVNNRIGLDIHTGSAAGWNNSIRYLGGHFANASGTHTTLDRYGIRFSCEPGAYNRHNAHLFIGPAFELQRQGTPGTVSAIPFLIQAGDERGILARGVRMEACSPFVARHAGGANDCVYEVCYTGTYGFAGAAVDYTGTATRAGGTAIPLHQAAAAHETPRLVAAAENVRQRAFRQTVDTDGGTGFEQMAVLSGNPNNAAQTLTGLAFAGLGSFTLNADSVGLPTSRALAFVVDCSDCKEFFIAAEGTALRPVVMQFDAGENVLLDTAPVLFSNMNAVWSGSTGSVSRFWEGNVNLDSPVSGLLLNRLQRVTLNAAAKYAAIGVRGGDETAVLKALRLYCPPLHAPTLIYGGSRKWGTREYTVTDTGWTVPSLAAGATTARDVTLPGVRQGDFVQASFAKSSGFQTGGVVFLSGAGGTASINQVRVTAQNISGGTIEVGAGTLYLRAVKPRV*	hallmark_hmm	common_virus	C0	9380	0	9380	GCA_000292225.1|ALOX01000052.1@region_1_9380@tool_cenote_CDS_0004	persistent	direct	high	2351	1.0	GCA_000292225.1_02314
GCA_000292225.1|ALOX01000052.1@region_1_9380@tool_cenote	cenote	CDS	5587	5901	GCA_000292225.1	ALOX01000052.1	GCA_000292225.1|ALOX01000052.1	GCA_000292225.1_ALOX01000052.1	GCA_000292225.1|ALOX01000052.1	GCA_000292225_1_52	GCA_000292225_1_52@C0	5588	5902	GCA_000292225_1_52_5	GCA_000292225_1_52_5	+	71958	.	.	hypothetical protein	MSSDGILPPEELHAAIRRVVADYGAFVAREPMPGAHEDPKGFAAHHAAAKTALAHLEHLLKLARASLATASAGEDVQTLLTQARAEIAAEGEDDDGQDTGDESA*	.	hypothetical_protein	C0	9380	0	9380	GCA_000292225.1|ALOX01000052.1@region_1_9380@tool_cenote_CDS_0005	persistent	direct	high	314	0.997	GCA_000292225.1_02315
GCA_000292225.1|ALOX01000052.1@region_1_9380@tool_cenote	cenote	CDS	5864	7351	GCA_000292225.1	ALOX01000052.1	GCA_000292225.1|ALOX01000052.1	GCA_000292225.1_ALOX01000052.1	GCA_000292225.1|ALOX01000052.1	GCA_000292225_1_52	GCA_000292225_1_52@C0	5865	7352	GCA_000292225_1_52_6	GCA_000292225_1_52_6	+	71958	.	PDB:3EZK_A	Terminase	MTTAKTRATRAPEPPGHAPGPDFLEFAWVWNARLGQATPGIHRRIARWFDARRRDGDGRLLLMAFRGCGKSTLVGLWCAWTLLRDPQARILVLAADAALATRMVANVRRILTRHPLCAHLLPDGPGEWAADRFTVRREGALRDPSMLAAGILGNITGSRADVIVCDDVEVAGNCDTPTRRAELRERLAETEFVLTPGGTILYVGTPHCAETLYLPPGDERAFLRGYHRLRLPLLDAAGRSAWPERFGMAAVAALRERVGPLHFARQMMLEATEDAAARLDPALLVRYGEETVYAESGGRPVLSLLGRRLVSGGGYWDPAYGRPGSGDASVLAALYADAEGNQYLHRLAYLTHEPGAQPDPATQQCARVAALARDLLLPVVRVETNGIGRFLPALLRREMARAGAACTVVEQSNSRPKRERILGALDPALAARRLHAHDSVFRTGFPAEMAGWRPELANQRDDALDAVAGCLLAEPVRMPGQAAVPRGRGWHGNSA*	hallmark_hmm	common_virus	C0	9380	0	9380	GCA_000292225.1|ALOX01000052.1@region_1_9380@tool_cenote_CDS_0006	persistent	direct	high	1487	0.999	GCA_000292225.1_02316
GCA_000292225.1|ALOX01000052.1@region_1_9380@tool_cenote	cenote	CDS	7643	8059	GCA_000292225.1	ALOX01000052.1	GCA_000292225.1|ALOX01000052.1	GCA_000292225.1_ALOX01000052.1	GCA_000292225.1|ALOX01000052.1	GCA_000292225_1_52	GCA_000292225_1_52@C0	7644	8060	GCA_000292225_1_52_7	GCA_000292225_1_52_7	+	71958	.	.	hypothetical protein	MPAEPLFRHLGRLLRREPWWAEFWAGAGCLVWTLWTFLAAVEPGARPTFRLATSLPLPLADERFWQASGAVLGLIQVASLLADHRRARRGASFLGSWWWTTLFLALLLADPGAPAMALYAVMAAINLVSLVRLRPETP*	.	hypothetical_protein	C0	9380	0	9380	GCA_000292225.1|ALOX01000052.1@region_1_9380@tool_cenote_CDS_0007	persistent	direct	high	416	0.998	GCA_000292225.1_02317
GCA_000292225.1|ALOX01000052.1@region_1_9380@tool_cenote	cenote	CDS	8204	8431	GCA_000292225.1	ALOX01000052.1	GCA_000292225.1|ALOX01000052.1	GCA_000292225.1_ALOX01000052.1	GCA_000292225.1|ALOX01000052.1	GCA_000292225_1_52	GCA_000292225_1_52@C0	8205	8432	GCA_000292225_1_52_8	GCA_000292225_1_52_8	+	71958	.	.	hypothetical protein	MASLDARQSAWIARQEQELEKMRLRLEALQADCDRAHELARAWHARAHALRHQLDAALPGRESRPSLPGLEEIET*	.	hypothetical_protein	C0	9380	0	9380	GCA_000292225.1|ALOX01000052.1@region_1_9380@tool_cenote_CDS_0008	persistent	direct	high	227	0.996	GCA_000292225.1_02318
GCA_000292225.1|ALOX01000052.1@region_1_9380@tool_cenote	cenote	CDS	8431	8997	GCA_000292225.1	ALOX01000052.1	GCA_000292225.1|ALOX01000052.1	GCA_000292225.1_ALOX01000052.1	GCA_000292225.1|ALOX01000052.1	GCA_000292225_1_52	GCA_000292225_1_52@C0	8432	8998	GCA_000292225_1_52_9	GCA_000292225_1_52_9	+	71958	.	COG3773	Cell wall hydrolase CwlJ, involved in spore germination  [Cell cycle control, cell division, chromosome partitioning, Cell wall/membrane/envelope biogenesis]. 	MRVEFTRFVPGPPFPMNLPGKAAMPSTDSSSADSRAHDAAILALTLYAEAGDRPLRAIEALAALVMNRHRSGQGHWGQGITGICRAPFQFPCWNTRHPHHARLRAAAPGGAAAHSAQMELCHRVALRALAGALPDPTGGATHMHADDSQPSWSIGRTPVAEIGGLLFYRPEPAEARVRPRGPALALAV*	mmseqs_cdd	nonviral_gene	C0	9380	0	9380	GCA_000292225.1|ALOX01000052.1@region_1_9380@tool_cenote_CDS_0009	persistent	direct	high	566	0.998	GCA_000292225.1_02319
GCA_000292225.1|ALOX01000052.1@region_1_9380@tool_cenote	cenote	CDS	9023	9379	GCA_000292225.1	ALOX01000052.1	GCA_000292225.1|ALOX01000052.1	GCA_000292225.1_ALOX01000052.1	GCA_000292225.1|ALOX01000052.1	GCA_000292225_1_52	GCA_000292225_1_52@C0	9024	9380	GCA_000292225_1_52_10	GCA_000292225_1_52_10	+	71958	.	COG3502	Uncharacterized conserved protein, DUF952 family [Function unknown]. 	MEQTIYTLVRGEDWRDAEAAGAYHGSADDRRDGFLHFSAAAQLRQSAAKHRAGEADLWMVAVSVPALGDALRWEPAAGGSRPGLFPHLYGPLPLSAVRATAHIPLDPDGRHIFPEEIP*	mmseqs_cdd	nonviral_gene	C0	9380	0	9380	GCA_000292225.1|ALOX01000052.1@region_1_9380@tool_cenote_CDS_0010	persistent	direct	high	356	0.997	GCA_000292225.1_02320