core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_000292995.1|ALKJ01000025.1@region_1_8739@tool_cenote	cenote	CDS	1	108	GCA_000292995.1	ALKJ01000025.1	GCA_000292995.1|ALKJ01000025.1	GCA_000292995.1_ALKJ01000025.1	GCA_000292995.1|ALKJ01000025.1	GCA_000292995_1_25	GCA_000292995_1_25	2	109	GCA_000292995_1_25_1	GCA_000292995_1_25_1	-	8739	.	.	hypothetical protein	MDKKQQEQLRKGLVFGGLGLLCALSLWFIFAPSDKE	.	hypothetical_protein	NaN	.	0	8739	GCA_000292995.1|ALKJ01000025.1@region_1_8739@tool_cenote_CDS_0001	.	unmatched_CDS	none	0	0	.
GCA_000292995.1|ALKJ01000025.1@region_1_8739@tool_cenote	cenote	CDS	402	1025	GCA_000292995.1	ALKJ01000025.1	GCA_000292995.1|ALKJ01000025.1	GCA_000292995.1_ALKJ01000025.1	GCA_000292995.1|ALKJ01000025.1	GCA_000292995_1_25	GCA_000292995_1_25	403	1026	GCA_000292995_1_25_2	GCA_000292995_1_25_2	-	8739	.	TIGR03781	Bacteroides conjugative transposon TraK protein. Members of this protein family are designated TraK and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage. PSI-BLAST reveals a distant relationship to proteins TrbF and VirB8 in Proteobacterial conjugal transfer systems. [Cellular processes, DNA transformation]	MEFQSLRNIETAFRQIRLYILLFALLSAGVSGYALYSSYRFAERQREKIYVLDQGKSLMLALSQDASRNRPVEAREHVRRFHELFFSIAPDKDAIEENMSRAFALCDKSAFDYYKDLAEQGYYNRAISGNVNQRIVIDSIRCNFERYPYEVTTYARQFILRQSNVTERSLVTSCTLQNSVRSDDNPQGFLMEHFLVRENQDLRSYKR*	mmseqs_cdd	nonviral_gene	NaN	.	0	8739	GCA_000292995.1|ALKJ01000025.1@region_1_8739@tool_cenote_CDS_0002	shell	direct	high	623	0.998	GCA_000292995.1_01287
GCA_000292995.1|ALKJ01000025.1@region_1_8739@tool_cenote	cenote	CDS	1047	2084	GCA_000292995.1	ALKJ01000025.1	GCA_000292995.1|ALKJ01000025.1	GCA_000292995.1_ALKJ01000025.1	GCA_000292995.1|ALKJ01000025.1	GCA_000292995_1_25	GCA_000292995_1_25	1048	2085	GCA_000292995_1_25_3	GCA_000292995_1_25_3	-	8739	.	TIGR03782	Bacteroides conjugative transposon TraJ protein. Members of this protein family are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage. This family is related conjugation system proteins in the Proteobacteria, including TrbL of Agrobacterium Ti plasmids and VirB6. [Cellular processes, DNA transformation]	MDFTSLHELLRSTYQEMLPLAGEMTGIAKGIAGLGALFYIALRVWSSLARAEPVDVYPLLRPFVLGFCIMFFPTVVLGTMNTVLSPVVQGTEAMVNKQEGQLAELTAKRDKLKEEAYLRNPETAYLVSNEKFDQKIEEMGIIGPEDAITIAGMYAERAAYQTKQWFMNLIHDLMELLFHAAGLIIDTLRTFILIVLSILGPVVFGIAVWDGLSGSLTAWFSRYISVYLWLPVSSILTALLTKIQVLMIQKDISALSDPNYLPDSGSWYYIVFFLIGMVGYFCVPTVAGWIIEAGGGIGSYGRNVNQVAQRGMQGAYVGGKAAAAGAGASIGNLGGRIKGALIKGK*	mmseqs_cdd	nonviral_gene	NaN	.	0	8739	GCA_000292995.1|ALKJ01000025.1@region_1_8739@tool_cenote_CDS_0003	shell	direct	high	1037	0.999	GCA_000292995.1_01288
GCA_000292995.1|ALKJ01000025.1@region_1_8739@tool_cenote	cenote	CDS	2099	2710	GCA_000292995.1	ALKJ01000025.1	GCA_000292995.1|ALKJ01000025.1	GCA_000292995.1_ALKJ01000025.1	GCA_000292995.1|ALKJ01000025.1	GCA_000292995_1_25	GCA_000292995_1_25	2100	2711	GCA_000292995_1_25_4	GCA_000292995_1_25_4	-	8739	.	PF13605.6	Domain of unknown function (DUF4141)	MALLGGSLFTQRAHAQWVVSDPMNFAGNIANTVKEIATAGKTVKNTLAGFKEIEKLYNDTKKYYEALKKVNNLIGDAYKVKECVLMVGDISEIYVKSYKRMLQDKNFRPSELAAIASGYTKLLEQSGESLKELKSVAGSNVFSMNDSERMQMIDRIYTTLREYRSLVSYYTQKNISVSYVRARAKGDLSAVRSLYGSEVSRYW*	hhsuite_tools	nonviral_gene	NaN	.	0	8739	GCA_000292995.1|ALKJ01000025.1@region_1_8739@tool_cenote_CDS_0004	shell	direct	high	611	0.998	GCA_000292995.1_01289
GCA_000292995.1|ALKJ01000025.1@region_1_8739@tool_cenote	cenote	CDS	2750	5257	GCA_000292995.1	ALKJ01000025.1	GCA_000292995.1|ALKJ01000025.1	GCA_000292995.1_ALKJ01000025.1	GCA_000292995.1|ALKJ01000025.1	GCA_000292995_1_25	GCA_000292995_1_25	2751	5258	GCA_000292995_1_25_5	GCA_000292995_1_25_5	-	8739	.	TIGR03783	Bacteroides conjugation system ATPase, TraG family. Members of this family include the predicted ATPase, TraG, encoded by transfer region genes of conjugative transposons of Bacteroides, such as CTnDOT, found on the main chromosome. Members also include TraG homologs borne on plasmids in Bacteroides. The protein family is related to the conjugative transfer system ATPase VirB4. [Cellular processes, DNA transformation]	MRHKSKTCSLEAKFPLLAVEQGCLISKDADITVAFRVELPELFTVTSAEYEAMHSAWYKAIKVLPNFSIVHKQDWFISEEYQGKLSEGELSFLARSSERHFNERPYLKHSVYLFLTKSNRKRMAQQSNFSVLCRGRLVPKEIEDKDAVVKFMEAVDQFERIINDTLLLRLERMTEDELVGTEDTPGLLDRYFSLSEEGHASLEDIQLGADLVRVGDHRLCLHTLSDTEDLPTRVSTDGRYERLSTDRSDCRLSFASPVGLLLSCNHIYNQYLFIEDSDATLERFEKQARNMHSLARYSRSNQINEEWIQEYLNIAHSQGLTSIRAHFNVLAWSSEADQLRQIKNDVGSALALMECTPRHNTIDTATLYWAGIPGNAADFPSEESFYTFIEPALCFFTAETNYKDSLSPFGIKMADRLSGKPIHLDISDLPMKKGIITNRNKFILGPSGSGKSFFTNHMVRQYYEQGAHVLLVDTGNSYQGLCELIHRKTKGEDGVYFTYSDEHPISFNPFYTDDYVFDVEKRESICTLLLTLWKSSEERITKTEAGELGSAVNAYIELIRADHTITPCFNTFYEYLRDVYREDMKQREIQVTLSDFNINNLLTTLKQYYRGGRYDFLLNSDKNIDLLSKRFIVFEIDQVKDNKDLFPVVTIIIMEAFINKMRRLKGIRKMILIEEAWKAIASANMADYIKYLYKTVRKFFGEAIVVTQEVDDIIQSPIVKESIINNSDCKILLDQRKYMTKFDGIQAMLGLSDKEKSQILSINQSNDPQRLYKEVWIGLGGMQSAVYATEVSLEEYLTYTTEETEKLEVLQRAERLGGDMEGAIRLLAQEKRQKK*	mmseqs_cdd	nonviral_gene	NaN	.	0	8739	GCA_000292995.1|ALKJ01000025.1@region_1_8739@tool_cenote_CDS_0005	shell	direct	high	2507	1.0	GCA_000292995.1_01290
GCA_000292995.1|ALKJ01000025.1@region_1_8739@tool_cenote	cenote	CDS	5254	5544	GCA_000292995.1	ALKJ01000025.1	GCA_000292995.1|ALKJ01000025.1	GCA_000292995.1_ALKJ01000025.1	GCA_000292995.1|ALKJ01000025.1	GCA_000292995_1_25	GCA_000292995_1_25	5255	5545	GCA_000292995_1_25_6	GCA_000292995_1_25_6	-	8739	.	PF13571.6	Domain of unknown function (DUF4133)	MEFKGLKVQYLFLFAGGLLATFIVVVVLYLLGVSQLLCLGIGVLGASLLVWQTFAMNRKYGEHGLMKRGALRSHPRYLAHRRSVLHLFHRLKSSRR*	hhsuite_tools	nonviral_gene	NaN	.	0	8739	GCA_000292995.1|ALKJ01000025.1@region_1_8739@tool_cenote_CDS_0006	shell	direct	high	290	0.997	GCA_000292995.1_01291
GCA_000292995.1|ALKJ01000025.1@region_1_8739@tool_cenote	cenote	CDS	5587	5889	GCA_000292995.1	ALKJ01000025.1	GCA_000292995.1|ALKJ01000025.1	GCA_000292995.1_ALKJ01000025.1	GCA_000292995.1|ALKJ01000025.1	GCA_000292995_1_25	GCA_000292995_1_25	5588	5890	GCA_000292995_1_25_7	GCA_000292995_1_25_7	-	8739	.	PDB:2IFO_A	Filamentous-Major-Coat-protein	MNTKKLAFLLLALFLAPVVADAQGNGMAGINEATKMVTSYFDPGTKLIYAIGAVVGLIGGIKVYNKFSSGDPDTSKTAASWFGACIFLIVAATILRSFFL*	hallmark_hmm	common_virus	NaN	.	0	8739	GCA_000292995.1|ALKJ01000025.1@region_1_8739@tool_cenote_CDS_0007	shell	direct	high	302	0.997	GCA_000292995.1_01292
GCA_000292995.1|ALKJ01000025.1@region_1_8739@tool_cenote	cenote	CDS	5923	6585	GCA_000292995.1	ALKJ01000025.1	GCA_000292995.1|ALKJ01000025.1	GCA_000292995.1_ALKJ01000025.1	GCA_000292995.1|ALKJ01000025.1	GCA_000292995_1_25	GCA_000292995_1_25	5924	6586	GCA_000292995_1_25_8	GCA_000292995_1_25_8	-	8739	.	PF13498.6	Domain of unknown function (DUF4122)	MMTTILLCVLLLLSIVWLALGITYSYERWRDLSRQRIGQRQEPRKREEEAHELVARSKGLTSHVIPPFPGSSVAEESNMNAPTFAEQSAEAEGEELDVDYTMEAVDEEEVLREELEWEADSSAELTSTSVLSRDLLRLSRWSQKDDLLDEEAPDTVSSSLQSLRGTDLLAQYQAELLRQEAVHKKLLQAIREAESETEEVAPLPPSQDARADMQGLDYYL*	hhsuite_tools	hypothetical_protein	NaN	.	0	8739	GCA_000292995.1|ALKJ01000025.1@region_1_8739@tool_cenote_CDS_0008	shell	direct	high	662	0.998	GCA_000292995.1_01293
GCA_000292995.1|ALKJ01000025.1@region_1_8739@tool_cenote	cenote	CDS	6582	7016	GCA_000292995.1	ALKJ01000025.1	GCA_000292995.1|ALKJ01000025.1	GCA_000292995.1_ALKJ01000025.1	GCA_000292995.1|ALKJ01000025.1	GCA_000292995_1_25	GCA_000292995_1_25	6583	7017	GCA_000292995_1_25_9	GCA_000292995_1_25_9	-	8739	.	pfam11888	Protein of unknown function (DUF3408). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 128 to 160 amino acids in length.	MATIEEQRRRLDAKLQEMADDGVLQGPSSATANFDPIDEEQSVPEKTVLPAPPMQVAALRPLEEVSTIEEYRERYFVPLRIREKTSFTMNAETLEILRSVLQDLHERVSMVSYIDNIIREHLRAHRELLNQASAKQRRKTTIPL*	mmseqs_cdd	nonviral_gene	NaN	.	0	8739	GCA_000292995.1|ALKJ01000025.1@region_1_8739@tool_cenote_CDS_0009	shell	direct	high	434	0.998	GCA_000292995.1_01294
GCA_000292995.1|ALKJ01000025.1@region_1_8739@tool_cenote	cenote	CDS	7003	7749	GCA_000292995.1	ALKJ01000025.1	GCA_000292995.1|ALKJ01000025.1	GCA_000292995.1_ALKJ01000025.1	GCA_000292995.1|ALKJ01000025.1	GCA_000292995_1_25	GCA_000292995_1_25	7004	7750	GCA_000292995_1_25_10	GCA_000292995_1_25_10	-	8739	.	PFAM:PF00142.17	ParA-like-partition-protein	MGKSTLAEILSSMLYYEEGISLFVVDCDLTQDSFFKLREREKGTIGEDPALTAYMQTYFHQLERRSYRIIKARPEEAVARAEALAMQYPEEGYQLVIFDFPGHAGTRELLELSLEMDYILSPLEPDIQSMVACLSYAKSIQDLGVSMQTARIKDIWLLWNKVDRRVRNTLVTHYTQHIQEEGLTLVPFPIYMAHRFSHELSMYGARGVFRSTYLPPNKTLRTGTNIDELAGWLIQALQLSILTTDGHD*	phrogs_hmm	hypothetical_protein	NaN	.	0	8739	GCA_000292995.1|ALKJ01000025.1@region_1_8739@tool_cenote_CDS_0010	shell	direct	high	746	0.999	GCA_000292995.1_01295
GCA_000292995.1|ALKJ01000025.1@region_1_8739@tool_cenote	cenote	CDS	8275	8688	GCA_000292995.1	ALKJ01000025.1	GCA_000292995.1|ALKJ01000025.1	GCA_000292995.1_ALKJ01000025.1	GCA_000292995.1|ALKJ01000025.1	GCA_000292995_1_25	GCA_000292995_1_25	8276	8689	GCA_000292995_1_25_11	GCA_000292995_1_25_11	+	8739	.	pfam19514	MobC-like protein. This family consists of several bacterial MobC-like, mobilisation proteins. MobC proteins belong to the group of relaxases. Together with MobA and MobB they bind to a single cis-active site of a mobilising plasmid, the origin of transfer (oriT) region.	MEKQSKPSSESLSPDKPRWDNWHIRLSCPKDQQKVIDLFERSGAKTKSDFVRARLLDESFKVITVDKSAVEYYRKLSQLTAQIHKIGILYNQTVKAINSYHSVKAAQVMLQRLEQYSQQIITLEQQAISLTLDYRKR*	mmseqs_cdd	nonviral_gene	NaN	.	0	8739	GCA_000292995.1|ALKJ01000025.1@region_1_8739@tool_cenote_CDS_0011	shell	direct	high	413	0.998	GCA_000292995.1_01296