core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_000307025.1|FR733643.1@region_129186_141496@tool_cenote	cenote	CDS	129185	129883	GCA_000307025.1	FR733643.1	GCA_000307025.1|FR733643.1	GCA_000307025.1_FR733643.1	GCA_000307025.1|FR733643.1	GCA_000307025_1_1	GCA_000307025_1_1@C10	1	699	GCA_000307025_1_1_133	GCA_000307025_1_1_133	+	2951805	.	COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant) [Signal transduction mechanisms]. 	MKFQLFIQPKLDVLQGNIVEYEILLRDDSAVPRFPLSELEAVLADEELYLAFSEWFSEAFLDVLKKYPNDRFAINIAPQQLFYIETLHWLDKLKSESHRITVEMTEDIFDVPGHKRHLNANDKNAFILNKIKVIHGLGYHIAIDDVSCGLNSLERVMSYLPYIIEIKFSLIHFKNIPLEDLLLFIKAWANFAQKNKLDFVVEGIETKETMTLLESHGVSIFQGYLVNKPFPV*	mmseqs_cdd	nonviral_gene	C10	12311	129185	141496	GCA_000307025.1|FR733643.1@region_129186_141496@tool_cenote_CDS_0001	persistent	direct	high	698	0.999	GCA_000307025.1_00131
GCA_000307025.1|FR733643.1@region_129186_141496@tool_cenote	cenote	CDS	129853	130548	GCA_000307025.1	FR733643.1	GCA_000307025.1|FR733643.1	GCA_000307025.1_FR733643.1	GCA_000307025.1|FR733643.1	GCA_000307025_1_1	GCA_000307025_1_1@C10	669	1364	GCA_000307025_1_1_134	GCA_000307025_1_1_134	-	2951805	.	4CYD_A	PROBABLE TRANSCRIPTION REGULATOR, PROBABLE EXPRESSION	MFHTIDFSDIFSSDYSNKISFKKGEIIHSYRDYEEKTPQIGAILEGTAVLEGPTNEGRWMINALIGQHSLFGMESLLETKTAPELTEYRVRALENGTVLFIDREFLLNYLYANPQFFHLILDEVIVRYLFTSKNYKNINQAPIVKVTRILVEIIELLHLHQTEGAIELPVYVTQTFLADYCRSSRARVTEVLEELRESGLLLSKKPITISSHENLLNQIDSFQTGNGLLTR*	hhsuite_tools	hypothetical_protein	C10	12311	129185	141496	GCA_000307025.1|FR733643.1@region_129186_141496@tool_cenote_CDS_0002	persistent	direct	high	695	0.999	GCA_000307025.1_00132
GCA_000307025.1|FR733643.1@region_129186_141496@tool_cenote	cenote	CDS	130767	131228	GCA_000307025.1	FR733643.1	GCA_000307025.1|FR733643.1	GCA_000307025.1_FR733643.1	GCA_000307025.1|FR733643.1	GCA_000307025_1_1	GCA_000307025_1_1@C10	1583	2044	GCA_000307025_1_1_135	GCA_000307025_1_1_135	-	2951805	.	PDB:3DTE_A	IrrE-protein	MILLYEKLVNKYQDEVTIREEKMPYKLPGLYLNGTIFISKDQSSIEKGCVLVEELMHYKYTVGNITKQETIMDKKQEIFARRKGYEELIPLDDIIACFYLGLREYFEVAEFLEVTEEFLRHTVTHYAEKYGPMYDYGGYFINFGNSIDVYKKF*	common_virus_hmm	common_virus	C10	12311	129185	141496	GCA_000307025.1|FR733643.1@region_129186_141496@tool_cenote_CDS_0003	persistent	direct	high	461	0.998	GCA_000307025.1_00133
GCA_000307025.1|FR733643.1@region_129186_141496@tool_cenote	cenote	CDS	131225	131560	GCA_000307025.1	FR733643.1	GCA_000307025.1|FR733643.1	GCA_000307025.1_FR733643.1	GCA_000307025.1|FR733643.1	GCA_000307025_1_1	GCA_000307025_1_1@C10	2041	2376	GCA_000307025_1_1_136	GCA_000307025_1_1_136	-	2951805	.	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain  [Transcription]. 	MELNKFVGNKIKQYREERGLNQEALAEKLHTTRQTISRYENGDRKANQDVLFELAKIFNKRLDDFFPERNLPPVDERLVTIAAHIDDDVTEEEMRDILAYIEMKKKLHRGM*	mmseqs_cdd	nonviral_gene	C10	12311	129185	141496	GCA_000307025.1|FR733643.1@region_129186_141496@tool_cenote_CDS_0004	persistent	direct	high	335	0.997	GCA_000307025.1_00134
GCA_000307025.1|FR733643.1@region_129186_141496@tool_cenote	cenote	CDS	131777	132205	GCA_000307025.1	FR733643.1	GCA_000307025.1|FR733643.1	GCA_000307025.1_FR733643.1	GCA_000307025.1|FR733643.1	GCA_000307025_1_1	GCA_000307025_1_1@C10	2593	3021	GCA_000307025_1_1_137	GCA_000307025_1_1_137	+	2951805	.	PF10654.9	Protein of unknown function (DUF2481)	MDRKLLKEKQIQLIFQLEQEENRFIRKRLIEELEFFEALGDREKGLLTAEQKLLILTPSEYREYKRTKSDVQISRLIGVSRSSLAEWKRKKGLNRKKPQPVQQEMIDVLAFHLDKTKDEIGALPASAIECQYEAFVINEAHN*	hhsuite_tools	hypothetical_protein	C10	12311	129185	141496	GCA_000307025.1|FR733643.1@region_129186_141496@tool_cenote_CDS_0005	persistent	direct	high	428	0.998	GCA_000307025.1_00135
GCA_000307025.1|FR733643.1@region_129186_141496@tool_cenote	cenote	CDS	132217	132633	GCA_000307025.1	FR733643.1	GCA_000307025.1|FR733643.1	GCA_000307025.1_FR733643.1	GCA_000307025.1|FR733643.1	GCA_000307025_1_1	GCA_000307025_1_1@C10	3033	3449	GCA_000307025_1_1_138	GCA_000307025_1_1_138	+	2951805	.	TIGR01637	phage transcriptional regulator, ArpU family. This model represents a family of phage proteins, including ArpU, called a putative autolysin regulatory protein. ArpU was described as a regulator of cellular muramidase-2 of Enterococcus hirae but appears to have been cloned from a prophage. This family appears related to the RinA family of bacteriophage transcriptional activators and to some sporulation-specific sigma factors. We propose that this is a phage transcriptional activator family. [Mobile and extrachromosomal element functions, Prophage functions, Regulatory functions, DNA interactions]	MQVLVLPENKDINYIKTVQEVKRFFADLERFRMITGLSKKPHLLRNGFLEEPQFEPVAFSARYNKEVILEARWLVEKYTEMLNQMDDLYRTILMECYVERKQDVAVMMDLPYEIAQFKRIKKRAVLEIATLMGILVRK*	mmseqs_cdd	common_virus	C10	12311	129185	141496	GCA_000307025.1|FR733643.1@region_129186_141496@tool_cenote_CDS_0006	persistent	direct	high	416	0.998	GCA_000307025.1_00136
GCA_000307025.1|FR733643.1@region_129186_141496@tool_cenote	cenote	CDS	132913	133302	GCA_000307025.1	FR733643.1	GCA_000307025.1|FR733643.1	GCA_000307025.1_FR733643.1	GCA_000307025.1|FR733643.1	GCA_000307025_1_1	GCA_000307025_1_1@C10	3729	4118	GCA_000307025_1_1_139	GCA_000307025_1_1_139	+	2951805	.	PDB:4ACV_B	Antigen-protein	MKSLSFMRVLEAVRTMLQEKGGLDVSIVMRDQVEMPTTMIEMIDQEEEESQTAWKEKYRFAIHHYTNETDLAGVEMIDTLIQTGFTLPEGYKLIAVRHYGKQNLVKENTLIHAKTSFEVSICRELKVKI*	common_virus_hmm	common_virus	C10	12311	129185	141496	GCA_000307025.1|FR733643.1@region_129186_141496@tool_cenote_CDS_0007	persistent	direct	high	389	0.997	GCA_000307025.1_00137
GCA_000307025.1|FR733643.1@region_129186_141496@tool_cenote	cenote	CDS	133315	133827	GCA_000307025.1	FR733643.1	GCA_000307025.1|FR733643.1	GCA_000307025.1_FR733643.1	GCA_000307025.1|FR733643.1	GCA_000307025_1_1	GCA_000307025_1_1@C10	4131	4643	GCA_000307025_1_1_140	GCA_000307025_1_1_140	+	2951805	.	PDB:5A21_H	major-tail-protein	MAFEENLYCDYTPGAAKAVAGKDVILAVFNAAGDKLLAVAGQQGLTVNRSKDSIEITSKDTVGGWKSKIGGMKEWSIENDGLYVADAESHKELAKYFESDSPVCVKIINQASKKGLFGGLAIVADYSFEAPFDEAMTYSVKLDGMGALVDLTITEGGDQMPGETPVAPAE*	hallmark_hmm	common_virus	C10	12311	129185	141496	GCA_000307025.1|FR733643.1@region_129186_141496@tool_cenote_CDS_0008	persistent	direct	high	512	0.998	GCA_000307025.1_00138
GCA_000307025.1|FR733643.1@region_129186_141496@tool_cenote	cenote	CDS	133875	134177	GCA_000307025.1	FR733643.1	GCA_000307025.1|FR733643.1	GCA_000307025.1_FR733643.1	GCA_000307025.1|FR733643.1	GCA_000307025_1_1	GCA_000307025_1_1@C10	4691	4993	GCA_000307025_1_1_141	GCA_000307025_1_1_141	+	2951805	.	PFAM:PF12363.7	tail-protein	MFEVNDTTYILRFNKQKVKTVELTSGISLVAALTANKGILSYQVIETLFVSGLVEEKGLVPVKQKEALEIFDKLVEEQGLISLNVAVIEKLQEDMGFLFR*	phrogs_hmm	hypothetical_protein	C10	12311	129185	141496	GCA_000307025.1|FR733643.1@region_129186_141496@tool_cenote_CDS_0009	persistent	direct	high	302	0.997	GCA_000307025.1_00139
GCA_000307025.1|FR733643.1@region_129186_141496@tool_cenote	cenote	CDS	134231	134623	GCA_000307025.1	FR733643.1	GCA_000307025.1|FR733643.1	GCA_000307025.1_FR733643.1	GCA_000307025.1|FR733643.1	GCA_000307025_1_1	GCA_000307025_1_1@C10	5047	5439	GCA_000307025_1_1_142	GCA_000307025_1_1_142	+	2951805	.	.	hypothetical protein	MNHDFDLEKQFAFFVVNFQMSKHDFEELTEVEKNFIMKEWENKVIFESTMLRNAVLNAEQNLNRKRNSRFIDLHKKRQKKADVNYTVNALQAISDNEAKEGKAWIDRIYGANGLRRPKNKEERGKVNGGF*	.	hypothetical_protein	C10	12311	129185	141496	GCA_000307025.1|FR733643.1@region_129186_141496@tool_cenote_CDS_0010	persistent	direct	high	393	1.0	GCA_000307025.1_00140
GCA_000307025.1|FR733643.1@region_129186_141496@tool_cenote	cenote	CDS	134610	136478	GCA_000307025.1	FR733643.1	GCA_000307025.1|FR733643.1	GCA_000307025.1_FR733643.1	GCA_000307025.1|FR733643.1	GCA_000307025_1_1	GCA_000307025_1_1@C10	5426	7294	GCA_000307025_1_1_143	GCA_000307025_1_1_143	+	2951805	.	UniProtKB:A0A0R1V141_9LACO	minor-tail-protein-	MADSKSFTFELNESVLTAQVGRLDEMAMVVERRFSELKMTIEDVGNADPGSKISESLGGLQSGLGTISSAFGQLGSSSEAITSGFGTAVGSVGGITDAFKNLGSSVQNGTLFSSLATGIGGMSTMLGGVSGGVQGITNLASGFMELKKHLGGLMSSIGGVGGIMGKLTSPMGLVIIGIVALVAAFAYLMTTNESFRNTVMSVVTQVAQLFGQLVASLMPIIMQIVTAVMQIGAALMPMVMQFISFFAQLLAQLMPFINMLISMLMPVIMQIVQVVMSLVSALLPSIMTVIQGIMSVIQFLIPIIMQIATVVVQIVVTIISYISKIMPIVMTIIGVIVSIITTIISYVVIIATTIASVIGKIISFIASVITAVIGIVQPIIGFITNIFTTIVTIIGAAFQMVFTVASKIWNAIMTTISGIIEGIKAVITGISTTVSSVFNGVKRIITGVFDGIKSAWGGLTDFVGNIFDGVSSAIQTVVDNVKGFVNVVIRGINGAIGLINKIPGVEIGKIPQLISGTTNFQGGFARMNEGGRGEMVVLPSGSQVIPHDATMKYARESARGNKSMLYTSQGADLARVENLLERLLQKNPVIKMDDKVVAEVVSRNQANSFDQYNYTMGGAAYS*	hallmark_hmm	common_virus	C10	12311	129185	141496	GCA_000307025.1|FR733643.1@region_129186_141496@tool_cenote_CDS_0011	persistent	direct	high	1868	0.999	GCA_000307025.1_00141
GCA_000307025.1|FR733643.1@region_129186_141496@tool_cenote	cenote	CDS	136475	137293	GCA_000307025.1	FR733643.1	GCA_000307025.1|FR733643.1	GCA_000307025.1_FR733643.1	GCA_000307025.1|FR733643.1	GCA_000307025_1_1	GCA_000307025_1_1@C10	7291	8109	GCA_000307025_1_1_144	GCA_000307025_1_1_144	+	2951805	.	PDB:2X8K_A	Distal-Tail-Protein	MSDLFLELNGKVHSLSETFPGLSVQEVSRQSPQLSMETAEIAGTDGVIPGMTQFKPFIFSAKCNLQALDIPDYHLAVREIYEFLFQRDSYYIWSDQMPGIRYEVHPKPVDFSRESDRVGLLTIEFDVFKGYAESRGTSLDPMTFEVDLWQMGMNLSNRDDLFYIFKENTFRVYNAGSDRVNPLMRHELDIAMTANGTPTIHNLTTGESFEYRKELQKTDVLLLNNIYPLVNNRRVGKDTNHGIITLEKGWNDFEIKGVTDVTIAFNFPFIYR*	hallmark_hmm	common_virus	C10	12311	129185	141496	GCA_000307025.1|FR733643.1@region_129186_141496@tool_cenote_CDS_0012	persistent	direct	high	818	0.999	GCA_000307025.1_00142
GCA_000307025.1|FR733643.1@region_129186_141496@tool_cenote	cenote	CDS	137303	138439	GCA_000307025.1	FR733643.1	GCA_000307025.1|FR733643.1	GCA_000307025.1_FR733643.1	GCA_000307025.1|FR733643.1	GCA_000307025_1_1	GCA_000307025_1_1@C10	8119	9255	GCA_000307025_1_1_145	GCA_000307025_1_1_145	+	2951805	.	PDB:3GS9_A	tail-protein-	MDYVIIQSMDKEVEEILTDIDYGSFSYDYEKNTSRAISFTVNKTKQNAAIFDLVGNEAILTYQGQQFVIKKCTPKSIGGTISKQITAQHICYTVQDHVQYNVKSGRKKYSIQTVLEFALQDNVLGFSYEIQGSFPLVELEDLGNKNGLELVNLCLEEFGAILFADNKKLYFYDEKSWYVRTEKQFRYLYNTEEVSVDTNTDNLKTEIKCYGKQKENADKLTGDNKYMAVVTYTSPNEAIYGKRMANAKSDDKITNNDDLLIFAKKQILDVPETALTISYKGKEPVSERDVWYFIHEPMGFETEVKVTKIKSSHPWSKKFQEIGFSNSRRDMVRIQTQIANQVKKASVDTNKINSFSSIAMNAYDSRILTEVVGVVDGD*	hallmark_hmm	common_virus	C10	12311	129185	141496	GCA_000307025.1|FR733643.1@region_129186_141496@tool_cenote_CDS_0013	persistent	direct	high	1136	0.999	GCA_000307025.1_00143
GCA_000307025.1|FR733643.1@region_129186_141496@tool_cenote	cenote	CDS	138429	138728	GCA_000307025.1	FR733643.1	GCA_000307025.1|FR733643.1	GCA_000307025.1_FR733643.1	GCA_000307025.1|FR733643.1	GCA_000307025_1_1	GCA_000307025_1_1@C10	9245	9544	GCA_000307025_1_1_146	GCA_000307025_1_1_146	+	2951805	.	.	hypothetical protein	MATEIRVLKNVDDTVFYPKTHVTAVEGLDSATTTTSGLMPASDKTKLNGIEANAEKNNVTAIDIANWNKKQDAILVSENGSNFKITVTNAGELKATKVE*	.	hypothetical_protein	C10	12311	129185	141496	GCA_000307025.1|FR733643.1@region_129186_141496@tool_cenote_CDS_0014	persistent	direct	high	299	0.997	GCA_000307025.1_00144
GCA_000307025.1|FR733643.1@region_129186_141496@tool_cenote	cenote	CDS	138743	139318	GCA_000307025.1	FR733643.1	GCA_000307025.1|FR733643.1	GCA_000307025.1_FR733643.1	GCA_000307025.1|FR733643.1	GCA_000307025_1_1	GCA_000307025_1_1@C10	9559	10134	GCA_000307025_1_1_147	GCA_000307025_1_1_147	+	2951805	.	PFAM:PF07602.10	tail-protein	MKLDLWKWEMLLQGREFRNKTNDNWQKLMDWSDFISTGLSAIYVYVNKADATLNNKIDTVDKAVNARVNELISGTEQLSEVVDARVDAFGARYPVLRERLNQEQLIYNKKSTVQFDVNTIINMEKQDIGLLTSKTISEAQTVCFLNISSLNEDADIVLEKTGETSFSENLTSLVFAKIGTNERYQMEPVGA*	phrogs_hmm	hypothetical_protein	C10	12311	129185	141496	GCA_000307025.1|FR733643.1@region_129186_141496@tool_cenote_CDS_0015	persistent	direct	high	575	0.998	GCA_000307025.1_00145
GCA_000307025.1|FR733643.1@region_129186_141496@tool_cenote	cenote	CDS	139333	139812	GCA_000307025.1	FR733643.1	GCA_000307025.1|FR733643.1	GCA_000307025.1_FR733643.1	GCA_000307025.1|FR733643.1	GCA_000307025_1_1	GCA_000307025_1_1@C10	10149	10628	GCA_000307025_1_1_148	GCA_000307025_1_1_148	+	2951805	.	.	hypothetical protein	MTEIKRMLQTKEDNSKEQFYPETHVAGIVGLTEYVSGQLPTGVVSVNGKAGRVLLDAEDVHAAKKSHNHEVATYTTDGFMSSFDKQKIDQLVSPEAGVTSINGKTGIVDLFAADLDAAEINHTHAEATTTESGFLAKEDKEKLDAMQIIALETIKEVIE*	.	hypothetical_protein	C10	12311	129185	141496	GCA_000307025.1|FR733643.1@region_129186_141496@tool_cenote_CDS_0016	persistent	direct	high	479	0.998	GCA_000307025.1_00146
GCA_000307025.1|FR733643.1@region_129186_141496@tool_cenote	cenote	CDS	139809	140345	GCA_000307025.1	FR733643.1	GCA_000307025.1|FR733643.1	GCA_000307025.1_FR733643.1	GCA_000307025.1|FR733643.1	GCA_000307025_1_1	GCA_000307025_1_1@C10	10625	11161	GCA_000307025_1_1_149	GCA_000307025_1_1_149	+	2951805	.	6R5W_A	Gp15 protein	MTKIVKMSEKNEHGTLEQFYPETHAEAVKGLVSVSEEEKATWNEKETTAGAEQKANTALNSAKDYVDTIGKGTVIFKGANIMAAGQKYTWNSSKLKFGITLLFSRYDSANNTPLDYYYHSVFLSKAQLAELAGKGLLVPMPSATYGERKYLYVSETEVAGHNDNTNNASWALRQLTVM*	hhsuite_tools	hypothetical_protein	C10	12311	129185	141496	GCA_000307025.1|FR733643.1@region_129186_141496@tool_cenote_CDS_0017	persistent	direct	high	536	0.998	GCA_000307025.1_00147
GCA_000307025.1|FR733643.1@region_129186_141496@tool_cenote	cenote	CDS	140364	140786	GCA_000307025.1	FR733643.1	GCA_000307025.1|FR733643.1	GCA_000307025.1_FR733643.1	GCA_000307025.1|FR733643.1	GCA_000307025_1_1	GCA_000307025_1_1@C10	11180	11602	GCA_000307025_1_1_150	GCA_000307025_1_1_150	+	2951805	.	PFAM:PF05105.11	Bacteriophage-holin	MEVILKIGILGFGAIFGYLFGEVDLLVKVLVCFIVADYISGLLASGYLGELSSKMGFKGIAKKIAILILVAIAHQIDLILGTHNTTRDAVIFFYLANELISILENFVRMGMKVPEVLKNLILIFDSKSGDEEEKHDKDMD*	common_virus_hmm	common_virus	C10	12311	129185	141496	GCA_000307025.1|FR733643.1@region_129186_141496@tool_cenote_CDS_0018	persistent	direct	high	422	0.998	GCA_000307025.1_00148
GCA_000307025.1|FR733643.1@region_129186_141496@tool_cenote	cenote	CDS	140767	141495	GCA_000307025.1	FR733643.1	GCA_000307025.1|FR733643.1	GCA_000307025.1_FR733643.1	GCA_000307025.1|FR733643.1	GCA_000307025_1_1	GCA_000307025_1_1@C10	11583	12311	GCA_000307025_1_1_151	GCA_000307025_1_1_151	+	2951805	.	PDB:5EMI_A	Cell-wall-hydrolase-autolysin	MTKIWIDAGHGGKDPGASGNGLVEKNWVLATAKQLQIELVKAGFEVGMTRTNDTFLELRERAKKANSFKANLFISLHFNAGGGKGYEDYIYTSVPAKTVEIQKIIHKNIIAKVTKHGMNDRGMKKANFAVLRETAMDAILLEAGFCDSTDALILEKKAYQTDYCLGIVAAVQEIFGAMVTKYRAGKYLTSDDAISGTNIKGYLEAGTKVFVYKETEKTLNLTTTKGVPGSWVLKTEVNTGKR*	common_virus_hmm	common_virus	C10	12311	129185	141496	GCA_000307025.1|FR733643.1@region_129186_141496@tool_cenote_CDS_0019	persistent	direct	high	728	0.999	GCA_000307025.1_00149