core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_000314675.2|KB375282.1@region_1212391_1224022@tool_cenote	cenote	CDS	1212390	1212632	GCA_000314675.2	KB375282.1	GCA_000314675.2|KB375282.1	GCA_000314675.2_KB375282.1	GCA_000314675.2|KB375282.1	GCA_000314675_2_1	GCA_000314675_2_1@C56	1	243	GCA_000314675_2_1_1096	GCA_000314675_2_1_1096	-	2643477	.	.	hypothetical protein	MTAQEHVLDAVLRAQGVLADYIEPGPRDCAQTLTKLYAIFADDRLTNAVNTLNLEAVHAAMASADTSKQIFTSPRRRTSG*	.	hypothetical_protein	C56	11632	1212390	1224022	GCA_000314675.2|KB375282.1@region_1212391_1224022@tool_cenote_CDS_0001	persistent	direct	high	242	0.996	GCA_000314675.2_01136
GCA_000314675.2|KB375282.1@region_1212391_1224022@tool_cenote	cenote	CDS	1212768	1212953	GCA_000314675.2	KB375282.1	GCA_000314675.2|KB375282.1	GCA_000314675.2_KB375282.1	GCA_000314675.2|KB375282.1	GCA_000314675_2_1	GCA_000314675_2_1@C56	379	564	GCA_000314675_2_1_1097	GCA_000314675_2_1_1097	-	2643477	.	.	hypothetical protein	MKQTVDRVMKAFVQKHKAMTPEQERRVRDEVSDFVAKLLEKRASQLTKFGNARLRETEPHI*	.	hypothetical_protein	C56	11632	1212390	1224022	GCA_000314675.2|KB375282.1@region_1212391_1224022@tool_cenote_CDS_0002	persistent	direct	high	185	0.995	GCA_000314675.2_01137
GCA_000314675.2|KB375282.1@region_1212391_1224022@tool_cenote	cenote	CDS	1213080	1213457	GCA_000314675.2	KB375282.1	GCA_000314675.2|KB375282.1	GCA_000314675.2_KB375282.1	GCA_000314675.2|KB375282.1	GCA_000314675_2_1	GCA_000314675_2_1@C56	691	1068	GCA_000314675_2_1_1098	GCA_000314675_2_1_1098	+	2643477	.	COG3706	Two-component response regulator, PleD family, consists of two REC domains and a diguanylate cyclase (GGDEF) domain [Signal transduction mechanisms, Transcription]. 	MGHALKQTVLVVEDDQLQRELVSLIFEESDLNVIQCRSAEAAAAVLEQTGGDLMLMFTNADLHGEMSGIELAWIAMERFPHIDVIVTSEQAIEDVPDNAMFMQKPWLPLEILRQAEISRQRHTVH*	mmseqs_cdd	nonviral_gene	C56	11632	1212390	1224022	GCA_000314675.2|KB375282.1@region_1212391_1224022@tool_cenote_CDS_0003	persistent	direct	high	377	0.997	GCA_000314675.2_01138
GCA_000314675.2|KB375282.1@region_1212391_1224022@tool_cenote	cenote	CDS	1213583	1214113	GCA_000314675.2	KB375282.1	GCA_000314675.2|KB375282.1	GCA_000314675.2_KB375282.1	GCA_000314675.2|KB375282.1	GCA_000314675_2_1	GCA_000314675_2_1@C56	1194	1724	GCA_000314675_2_1_1099	GCA_000314675_2_1_1099	-	2643477	.	PF05068.12	Mannitol repressor	MTEEPKIRIGDARPLTTHDYLKMLSEQSEAGNALVLAGLVEDWLQKLLMHSTRSLSNTLATKIYDGYGPLSQFSQKIEIAYIFELIDEDVYDELRAIKEIRNRFAHTTVFRNFKSEEVAKECQRLKGWKKNGDNQMLYLERTKACVEAISKKISLKILVGALKDAPGVDDRTLPDR*	hhsuite_tools	hypothetical_protein	C56	11632	1212390	1224022	GCA_000314675.2|KB375282.1@region_1212391_1224022@tool_cenote_CDS_0004	cloud	direct	high	530	0.998	GCA_000314675.2_01139
GCA_000314675.2|KB375282.1@region_1212391_1224022@tool_cenote	cenote	CDS	1214582	1214746	GCA_000314675.2	KB375282.1	GCA_000314675.2|KB375282.1	GCA_000314675.2_KB375282.1	GCA_000314675.2|KB375282.1	GCA_000314675_2_1	GCA_000314675_2_1@C56	2193	2357	GCA_000314675_2_1_1100	GCA_000314675_2_1_1100	+	2643477	.	.	hypothetical protein	MAKVEHAEGHRRVVETPTEARQAEPGPSVLALLTVSTIAAIFVLAIIWFVFFRT*	.	hypothetical_protein	C56	11632	1212390	1224022	GCA_000314675.2|KB375282.1@region_1212391_1224022@tool_cenote_CDS_0005	persistent	direct	high	164	0.994	GCA_000314675.2_01140
GCA_000314675.2|KB375282.1@region_1212391_1224022@tool_cenote	cenote	CDS	1214901	1215626	GCA_000314675.2	KB375282.1	GCA_000314675.2|KB375282.1	GCA_000314675.2_KB375282.1	GCA_000314675.2|KB375282.1	GCA_000314675_2_1	GCA_000314675_2_1@C56	2512	3237	GCA_000314675_2_1_1101	GCA_000314675_2_1_1101	+	2643477	.	.	hypothetical protein	MPKKPVSAPVKRPGAKKAARKTVVKKTARKTARKTAKKTVRKTAVKKAPVKKTSAGKIAPKTARKPLAAKPEKEKRPRAKVTHEHPGNLVADPHDHSANEAIAARSARRTTRLKPRKQTATDIAADPPPGDTPATSMVARVSDAIERELSKIERIVGNPSRLYPAQRIETESRARVLASLARTLKEVMRLREQERGTDDNAKADDDAIPRDLDEFRRELSRRLEGLVESAAPVSDRGDEPG*	.	hypothetical_protein	C56	11632	1212390	1224022	GCA_000314675.2|KB375282.1@region_1212391_1224022@tool_cenote_CDS_0006	persistent	direct	high	725	0.999	GCA_000314675.2_01141
GCA_000314675.2|KB375282.1@region_1212391_1224022@tool_cenote	cenote	CDS	1215613	1216881	GCA_000314675.2	KB375282.1	GCA_000314675.2|KB375282.1	GCA_000314675.2_KB375282.1	GCA_000314675.2|KB375282.1	GCA_000314675_2_1	GCA_000314675_2_1@C56	3224	4492	GCA_000314675_2_1_1102	GCA_000314675_2_1_1102	+	2643477	.	CDD:COG5323	Large-Terminase	MSRAELELLFGRWDVFAHDHQVPPLLAPNGQPWLTWLLIGGRGAGKTRAGAEWVRAQALGLAPLADAPVTNIALVGETEHDVREVVIEGVSGLLAVHRRDERPVWISSRRRLEWSNGAVAYAFSAEDPESLRGPQFGCAWSDEMAKWRYAQATFDMLQFGLRLGHQPRQLITTTPRPTALIKRLMLEPTSVVTRAGTQANAYHLAPTFLKGVLARYKDTRLGQQELDGEIIEDRPDALWSRTLIENCRVSDAPPLSRIVVAVDPPASSGKRADACGIVAAGITGEGAIYVIADETVSQATPAVWAAKAIALWRKLEADALVAEVNQGGEMVRSVIGEVDAGVPVVSVRAHRGKYLRAEPVATLYEQGRVRHAGSFPALEDEMCDFGPGGLTSGRSPDRLDALVWAIASLTFTTRAQPRVRGL*	hallmark_hmm	common_virus	C56	11632	1212390	1224022	GCA_000314675.2|KB375282.1@region_1212391_1224022@tool_cenote_CDS_0007	persistent	direct	high	1268	0.999	GCA_000314675.2_01142
GCA_000314675.2|KB375282.1@region_1212391_1224022@tool_cenote	cenote	CDS	1217040	1217333	GCA_000314675.2	KB375282.1	GCA_000314675.2|KB375282.1	GCA_000314675.2_KB375282.1	GCA_000314675.2|KB375282.1	GCA_000314675_2_1	GCA_000314675_2_1@C56	4651	4944	GCA_000314675_2_1_1103	GCA_000314675_2_1_1103	-	2643477	.	PFAM:PF01541.23	endonuclease	MDQTFVVYILANRARGVLYVGVTNDLSRRLAEHRAKLVPAFTTRYGVTCLVHIETYNSILEARAREHSLKRWRRTWKFELIEKDNPEWRDLSDDMSS*	phrogs_hmm	nonviral_gene	C56	11632	1212390	1224022	GCA_000314675.2|KB375282.1@region_1212391_1224022@tool_cenote_CDS_0008	cloud	direct	high	293	0.997	GCA_000314675.2_01143
GCA_000314675.2|KB375282.1@region_1212391_1224022@tool_cenote	cenote	CDS	1217486	1219723	GCA_000314675.2	KB375282.1	GCA_000314675.2|KB375282.1	GCA_000314675.2_KB375282.1	GCA_000314675.2|KB375282.1	GCA_000314675_2_1	GCA_000314675_2_1@C56	5097	7334	GCA_000314675_2_1_1104	GCA_000314675_2_1_1104	+	2643477	.	PDB:8CEZ_K	Portal-Protein	MLNFKNLFRAPEAKASRTAQVLAFESGGRARWTPRDYAALAREGYLTNAIVHRAVRLIAENAASCGFLLYEGAQEREAHPLLQLLTRPNARQDGASFFEALYAHMLLAGNAYVEAVALGDEVRELYALRPDRMKVVPGHDGWAEAYEYSVAGRSVRFDQLTSSVPPILHLTFFHPLDDHYGLAPIEAAAVAVDAVVQIGVLDADRTAPPTTPAEGDRHIIATGATGAWAGHADALAAYQDGAWRFLIPKPGWCAWCDADGALLVYDGTAWTDVAGGAGAMPGSVAQLGVNDTASAPNLLTVKSNAALFNAVSVAGGGTGHMRVQISKEASAKTASVVFSDAFSGRAEFGLIGSDDFKLKVSSDGSTFVEALAIDQSSGNAAFPRGLSLTGVISPSQITANQNDYNPSGLGAVSVLNLSSDTLRSVSGLAGGAEGRVIALINTGSQIISLLNESASSTAANRFALGTDLTIAGKQAALLRYDGTAARWRAMSRPGGRETLAASRTYYVRTDGSDSNDGLSNVSGGAFLTIQKAISAVAGLDLNGKAVTIQVGNGTYTAGVSVTSPFVGGVPVLQGDTTTPGNVVISVTGDAVSVSNGAELGIGGFKLVTATAGSGLNATKAGRINVTGKMEFGTCATAHMHSSYAGQIAVSADYTISGGSLYHWWSETAGGSIAVIGRTVTLTGTPAFTAFANATIVAQIVAVSNTYSGSATGSRYSVTLNGVILSSGATLPGSTAGTTATGGQYN*	hallmark_hmm	common_virus	C56	11632	1212390	1224022	GCA_000314675.2|KB375282.1@region_1212391_1224022@tool_cenote_CDS_0009	persistent	direct	high	2237	1.0	GCA_000314675.2_01144
GCA_000314675.2|KB375282.1@region_1212391_1224022@tool_cenote	cenote	CDS	1219723	1220517	GCA_000314675.2	KB375282.1	GCA_000314675.2|KB375282.1	GCA_000314675.2_KB375282.1	GCA_000314675.2|KB375282.1	GCA_000314675_2_1	GCA_000314675_2_1@C56	7334	8128	GCA_000314675_2_1_1105	GCA_000314675_2_1_1105	+	2643477	.	CDD:COG3926	Lysozyme	MAAESYNAALTRLLKDEGGYTDHPSDPGGPTNFGITLADARRYWKGNATADDVRTMPQSAARKIYRERYWNAMRCDELPAGVDYAVFDYGVNSGIGRAGKVLRRVLEMPDSTSAVTNDVIAATSKRNAGDLVAAICAERLAFLQGLKIFPVFGRGWTARVNGVRVAALAMAQGRTPATATSAETSAGKAVVPVKNPAGPASAGAVIAAGAAAAAATSRFEVAALVVAAALAASVAVFLIWRWRHRAAQEAAVTAFTERTSNGLG*	common_virus_hmm	common_virus	C56	11632	1212390	1224022	GCA_000314675.2|KB375282.1@region_1212391_1224022@tool_cenote_CDS_0010	persistent	direct	high	794	0.999	GCA_000314675.2_01145
GCA_000314675.2|KB375282.1@region_1212391_1224022@tool_cenote	cenote	CDS	1220504	1221076	GCA_000314675.2	KB375282.1	GCA_000314675.2|KB375282.1	GCA_000314675.2_KB375282.1	GCA_000314675.2|KB375282.1	GCA_000314675_2_1	GCA_000314675_2_1@C56	8115	8687	GCA_000314675_2_1_1106	GCA_000314675_2_1_1106	+	2643477	.	.	hypothetical protein	MDWASLAKQVIGLGAPILGTALGGPLGGAAGRILAEVVGAPEPTPEAVGKALPSCGADRIALAENAWTEAVRAEAEAVRGSVAETQATIRVELGSEDVVQRLWRPFYALELTLECAALWAVLVHEFWTGDMTAINALIGATGLLVSYWGFRFGVLGVYVSGRTREKLSLATGQETPGVLDKLVKAVVKKK*	.	hypothetical_protein	C56	11632	1212390	1224022	GCA_000314675.2|KB375282.1@region_1212391_1224022@tool_cenote_CDS_0011	persistent	direct	high	572	0.998	GCA_000314675.2_01146
GCA_000314675.2|KB375282.1@region_1212391_1224022@tool_cenote	cenote	CDS	1221179	1221874	GCA_000314675.2	KB375282.1	GCA_000314675.2|KB375282.1	GCA_000314675.2_KB375282.1	GCA_000314675.2|KB375282.1	GCA_000314675_2_1	GCA_000314675_2_1@C56	8790	9485	GCA_000314675_2_1_1107	GCA_000314675_2_1_1107	+	2643477	.	PRK10643	two-component system response regulator PmrA. 	MRLLVVEDDPDLNRQLTTALSDAGYVVDRAFDGEEGHFLGDSEPYDAVVLDIGLPKMDGISVLEAWRRNKRTMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRSAGHAQSELTCGPVMLDTRTNRVSVNGNPIKMTSHEYRLLAYLMHHSGRVVSRTELVEHLYDQDFDRDSNTIEVFVGRIRKKLDVDIIQTVRGLGYLLTPPVADTKASATDAR*	mmseqs_cdd	nonviral_gene	C56	11632	1212390	1224022	GCA_000314675.2|KB375282.1@region_1212391_1224022@tool_cenote_CDS_0012	persistent	direct	high	695	0.999	GCA_000314675.2_01147
GCA_000314675.2|KB375282.1@region_1212391_1224022@tool_cenote	cenote	CDS	1222034	1223425	GCA_000314675.2	KB375282.1	GCA_000314675.2|KB375282.1	GCA_000314675.2_KB375282.1	GCA_000314675.2|KB375282.1	GCA_000314675_2_1	GCA_000314675_2_1@C56	9645	11036	GCA_000314675_2_1_1108	GCA_000314675_2_1_1108	+	2643477	.	PRK10815	two-component system sensor histidine kinase PhoQ. 	MNRHAKSLATRLFLSATAWVVLILVITGIVLSTVYKRSTERAFDRRLNFYLRTLIAEAAQPDDSSDKSERSVQSLGEPLFELPLSGWYWRMARTDGDKPEVRASRSLWDASLPKLEDKGIDLDQSGVRVGYVIGPENQHLRMVERPVDLGTEGKFLATVAGDATEIEDETWAFNTYLTVTFAALTVGLLLTTIFQVRYGLAPLKRISNSLAAIRSGQADRLEGEFPEEIAPLARETNALLDANRAIVERSRTHVGNLAHAIKTPLSVIVNEAGANRDDPLAIKVLEQAEIMRDQVAHHLERARIAARVTTIGTVTDVAPVIEALARTMEKIHRDRDILIDAEVNAGAKFRGERQDLEEMVGNLVDNACKWATQKVFIEVLLELTPGGALDPTLRIIVDDDGPGLSPAERTQVARRGQRLDETKPGSGLGLSIVTDLAALYGGSLTLGAAPIGGLRSELVLPGV*	mmseqs_cdd	nonviral_gene	C56	11632	1212390	1224022	GCA_000314675.2|KB375282.1@region_1212391_1224022@tool_cenote_CDS_0013	persistent	direct	high	1391	0.999	GCA_000314675.2_01148
GCA_000314675.2|KB375282.1@region_1212391_1224022@tool_cenote	cenote	CDS	1223588	1223830	GCA_000314675.2	KB375282.1	GCA_000314675.2|KB375282.1	GCA_000314675.2_KB375282.1	GCA_000314675.2|KB375282.1	GCA_000314675_2_1	GCA_000314675_2_1@C56	11199	11441	GCA_000314675_2_1_1109	GCA_000314675_2_1_1109	+	2643477	.	PF08972.11	Domain of unknown function (DUF1902)	MGHLIVVRATWDSDAEVWTAESTDLPGLVTEASSLDELDAKLPDLIRDLLDVNEAGDGFDVPVEVIATFSRRVRVGAKAA*	hhsuite_tools	nonviral_gene	C56	11632	1212390	1224022	GCA_000314675.2|KB375282.1@region_1212391_1224022@tool_cenote_CDS_0014	cloud	direct	high	242	0.996	GCA_000314675.2_01149
GCA_000314675.2|KB375282.1@region_1212391_1224022@tool_cenote	cenote	CDS	1223827	1224021	GCA_000314675.2	KB375282.1	GCA_000314675.2|KB375282.1	GCA_000314675.2_KB375282.1	GCA_000314675.2|KB375282.1	GCA_000314675_2_1	GCA_000314675_2_1@C56	11438	11632	GCA_000314675_2_1_1110	GCA_000314675_2_1_1110	+	2643477	.	PFAM:PF07927.11	toxin	MKSFTPELKKLLAEANCSFVRKGRGDHEIWESPISGIRFTVDNNIKSRHTANAVLKQAGLPKHF*	phrogs_hmm	hypothetical_protein	C56	11632	1212390	1224022	GCA_000314675.2|KB375282.1@region_1212391_1224022@tool_cenote_CDS_0015	cloud	direct	high	194	0.995	GCA_000314675.2_01150