core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1658849	1659133	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	1	285	GCA_000314775_2_1_1581	GCA_000314775_2_1_1581	-	2000650	.	PRK00364	co-chaperonin GroES; Reviewed	MLKPLGDRVVLKIEEKEQTVGGFVLAGSAQEKTKTARVVATGQGVRTLNGDLVAPSVKAGDRVLVEAHAGIDVKDGDEKYIIVGEANILAIIEE*	mmseqs_cdd	nonviral_gene	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0001	persistent	indirect	.	.	.	GCA_000154405.1_00282
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1659289	1659666	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	441	818	GCA_000314775_2_1_1582	GCA_000314775_2_1_1582	-	2000650	.	PDB:1Z9F_A	Single-stranded-DNA-binding-protein	MIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNLVLWGKLAETLASYATKGSLISVDGELRTRRFEKNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF*	common_virus_hmm	common_virus	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0002	cloud	indirect	.	.	.	GCA_022648595.1_03250
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1659706	1659948	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	858	1100	GCA_000314775_2_1_1583	GCA_000314775_2_1_1583	-	2000650	.	.	hypothetical protein	MNILKIELASIEQTDLGFEHWVDVTYTVPILKNEYTVKLLLLFDFEIEDDKVIEYLVTTWKYRDLVLHSVRMYEMEREIA*	.	hypothetical_protein	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0003	shell	indirect	.	.	.	GCA_002096815.1_00850
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1660004	1660615	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	1156	1767	GCA_000314775_2_1_1584	GCA_000314775_2_1_1584	-	2000650	.	PFAM:PF05551.10	HNH-endonuclease	MVKDDLTNQRFGRLTVLGDVGKRTSRGRVLWHCLCECGRVTFVQGDHLKKGRIRSCGCLNDEKKHERFKDLTNTETDNFKIIDRARSKNQRVYWNCICKHCGNHVELQSNQIARYLSCGCKHNRSTKERMAEISDPESLKTNKPTAKSTTGVRGVYFNKRKNRYQVFINVDKKPKYLGSTSSLEEAAKMRHEAEIEYGYKQKQ*	phrogs_hmm	hypothetical_protein	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0004	cloud	indirect	.	.	.	GCA_007197715.1_01891
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1660626	1661015	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	1778	2167	GCA_000314775_2_1_1585	GCA_000314775_2_1_1585	-	2000650	.	NF033948	anti-CRISPR protein AcrIIA3. AcrIIA3, as found in siphophages infecting Listeria and Streptococcus, is an anti-CRISPR protein that prevents Cas9-containing CRISPR systems from protecting against phage infection.	MKKVAYDKSGIMKEAWEMFNRNYQICDFEYADFSGREYFEYASFADCLKEAWAHEKEVVERVNQKYADAETSEEVKAWDWACKKLGVAFEMDAYTKITNVEGMEKEAWPGTSVWSLAMRAVKLHMEVAA*	mmseqs_cdd	nonviral_gene	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0005	cloud	indirect	.	.	.	GCA_009496905.1_01093
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1661165	1661356	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	2317	2508	GCA_000314775_2_1_1586	GCA_000314775_2_1_1586	-	2000650	.	PFAM:PF04936.11	transcriptional-regulator	MKVDTKQIEWLLKNASGYQISKMSGVAQPTISALINKKRSIENLTIETGHKLTELANQMQKTP*	phrogs_hmm	hypothetical_protein	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0006	cloud	indirect	.	.	.	GCA_020729725.1_00958
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1661439	1661744	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	2591	2896	GCA_000314775_2_1_1587	GCA_000314775_2_1_1587	-	2000650	.	.	hypothetical protein	MKNGHMILGQRWTNAIRNETGTSSKMFNLSKRLYDFKDNNLREIHEALYGLLRAGYDISNMRDVEELAKYVDVKKSHGKLLDVTRDDIELYHRLFVARFGK*	.	hypothetical_protein	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0007	cloud	indirect	.	.	.	GCA_009717435.1_00563
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1662067	1662933	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	3219	4085	GCA_000314775_2_1_1588	GCA_000314775_2_1_1588	-	2000650	.	PDB:5UDN_B	lysin	MSKKQDMINDLIAHADAGAGVDYDGMYGYQCADVTCYGIYKYFGIRLWGNAIDLLRSAEAAGLQVVYGAQHPKAGWFFVKNFVAGDGVNYGHTGLVYEDSDGSTIKTIEQNIDGNWDYLEVGGPCRYNERSVDSIVGYIVPPEEDESGWKHDDTGWWWRRKDGSYPTAKFEAVDWNWFYFDENGYMYANQWLHHTDGYWYWFDKDGYMANTGWKKINGKWYYFNADGAMQTGWVKYYEKWYYLNSENGDMVSNTFVPYNGGYYLMLEDGRLAEKESFNIEPDGLITTK*	common_virus_hmm	common_virus	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0008	cloud	indirect	.	.	.	GCA_938037195.1_00415
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1662926	1663270	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	4078	4422	GCA_000314775_2_1_1589	GCA_000314775_2_1_1589	-	2000650	.	PFAM:PF09682.9	Phage-holin	MQQITEIIVASATGILTILAGVAVKSIKDFLIKKGGEKTIKIVEILAKNAVNAVEQVASETGYKGEEKLEQARTKIRAELSKYNISMTDKDLNTFVESAVKQMNDAWKGDDANV*	common_virus_hmm	common_virus	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0009	cloud	indirect	.	.	.	GCA_027685845.1_01526
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1663274	1663573	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	4426	4725	GCA_000314775_2_1_1590	GCA_000314775_2_1_1590	-	2000650	.	PFAM:PF10960.7	involved-in-bacteriocin-production-or-immunity	MPIEEAEKIAQSQVAWAILFILLFFIIIQYLIKTSDKREKKIMDLHEQSKADSNRREERLMTHLEKTTTELTTITHTVGDIQKEMVRMNDRMDEIEKGE*	phrogs_hmm	hypothetical_protein	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0010	cloud	indirect	.	.	.	GCA_003942765.1_00404
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1663587	1664195	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	4739	5347	GCA_000314775_2_1_1591	GCA_000314775_2_1_1591	-	2000650	.	PF07104.11	Protein of unknown function (DUF1366)	MAINNYELAGKPYTRGLGDNLKTVVEIRLSDGTRYSTNMRELAGDRTNDQEDVLIQAVLDIIKAELDPGSAIVKAQAEIKQAVQTLAKTNTDLTANIENLDNVSAITEVLIALAIGQNGGMTTNTYSKVAQFIKPLVKDRRYSNGDIVSMPYPYDTNPKWPKETPTILKFQMQPSEGYTWKEQALAEMLQKGILTVVMPRIE*	hhsuite_tools	hypothetical_protein	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0011	cloud	indirect	.	.	.	GCA_009496905.1_01100
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1664185	1664394	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	5337	5546	GCA_000314775_2_1_1592	GCA_000314775_2_1_1592	-	2000650	.	.	hypothetical protein	MNEQDKQISTLTIKSLSERISNEATQSATLEALYTVTAMELEQMKQVIDSDEKLKAKFEEVKGQMTNGN*	.	hypothetical_protein	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0012	cloud	indirect	.	.	.	GCA_902159415.1_01050
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1664391	1668011	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	5543	9163	GCA_000314775_2_1_1593	GCA_000314775_2_1_1593	-	2000650	.	PDB:3GUD_A	Neck-appendage-protein	MIYLTNGNMPLNAAYADEIVQEDNSTYQLTFRFPTSDSLWEKLKEETFLTADDLHGEQDFVIFEVEKKHGYIQVYANQVFTLLNNYVVSSLALDRATGSTALSRFAGAITRDNPFSFFSDIEDRHTFNVGSKNAMEAFAKDKHSILGQWGGDLVRHGYQVRLLKNGGSENESLFMYKKNLSSYQHKTSTKSLKTRITFKTTVKGEGEKAPDRKFSVVVDSPLINKYSQIYEDVIEVNDEDVKDEASLRKYGEQYFKTSLCDMMEDSLELEVVGQSDVPVQMYDIVSLFHEVYNLDVRKKITKYTYSPMAKKLISIGFGQFKSGLANAIGNAVSDAVKGEAQQLQNDFERQLARELKNADLAFDRQKKELVNQFTDGLNAAKARAEEVKRELSDTIDQRFSSFNSGPLQEVKRRAEEALRNAGASSLLAQEAKRIGLDSIAKLEEFKSQATSAQTALSGDLDALKRTVTSEVNQASEHRRTTTEALSRMTGQMNGFATKSEVRQDVVGLTETFAKLKTDTNNLISGAKSEITLAKTEFQKTADGLSAKMSAVESYVGQDSQRQEALRRYTREESARQATAVRELVTRDYVGKTTYQEDVRGLERRFSTITTQTNNDIATKIAQYKQTVDGQFANITSQIAGKANLLDFQRVQETSKLYERIIGRSESDIADKVARMALTNQLFQVEIAKNASDGQNLLKGSKNFSGDWKNMAAGWKKHSDKYQGCDVLFKNNSWNGVGQEIDAKIGGIYTFSLWMKSDWKNDTVNFYVNKNGSVDKGWGVPSETSVAITSEWKRYSFTFKITANGFIFPRVERLNQNTNLYVAGLKLEKGSYATPYTEAPEDTDEAIRTVQSQLAGSWAVQNINSAGSIVSQINATNNQILIEAEKIRLKGKTLLDELTAIDGYFKRLFVGEGEFAKLNAEIIASKTITADKLVMDQAMARMFVSSDIFTDTLAAKEAFINKLRSVVVSATLLEGYKGKIGGFQIGTHDKDPHTYWLTGQNQFYVGMSSGAGSWGKTALWVNWGTTWESPGKYAWFVKESGAMYCYNTAHFWNTPVIHGDLRVTGYIYYNNENSGKSGYWIHSSKYLNFEPSNDYLYLYYAGSKYDWIPMNKEISDRRYKHNIEASTVSGLDVVKNLKTYRYRKEYDGRIEDISCGIMAQDVQKYAPEAFYENPDGAYSYRTFELVPYLIKAIQELNHKIEKLEKTA*	hallmark_hmm	common_virus	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0013	cloud	indirect	.	.	.	GCA_000314775.2_01666
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1668008	1668709	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	9160	9861	GCA_000314775_2_1_1594	GCA_000314775_2_1_1594	-	2000650	.	PDB:2X8K_A	Distal-Tail-Protein	MANYLKINDFSTSSFKNCVVTDFGTIHSASPRFSEQLKLYGMNGSYNQEDGAFDNYERTIRVFFERFSNLATLVEKFQPVGNRLEFSYQPDSFFYADFLDTEIIPKGMYGWELAIKLDMQPFRYQKNVDPVVLTASGTINNPGTIYSEPIIEIEGDGDISLTIGRKTMYLAIKTKATIDCRQGKQNICNATGAVQNTLRKRGGFLEIPTGKAGVSFTGNVRKITIRPNWRYKI*	hallmark_hmm	common_virus	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0014	cloud	indirect	.	.	.	GCA_001544235.1_02251
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1668709	1673001	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	9861	14153	GCA_000314775_2_1_1595	GCA_000314775_2_1_1595	-	2000650	.	PFAM:PF10145.8	minor-tail-protein	MASNIGELVATATLDVAPFQSNVGRLKTYLKGVDNSLKAMENNFKGAGKNVSNLKGLLSQTGSALSSYQKVLSSQSERYNQLKASIGDVSTATAEQKQKLVEASASMTATAAKVAELQNRYEQLASSMRRAYIDDSAFTKFGKGAQEVGNKISQMGQNISGFGSALTRGVTAPIVAGAGLVVKAAIDYESAFAGVKKTVDETASVSYQKLSDGIRQMAKELPASAVQIANVAEVAGQLGIKAEDILTFSRTMIDMGESTNLSAEEAATAIAKIANILGLTSDEYGRFGASVVDLGNNFATTEKDIVEMTNRLAAGGKLAGLTAPEILGLATAMSSVGIEAEAGGTAMTQTLTAIGNAVSLTTKDSADDLALIAKVAGTTSEEFQKAWKEKPAEALQAFIKGLNTAREQGANMDAILMKLGMTGVRQGNMLKSLALSSDKMSAAVERSNQAWKDNTALTNEANKRYETTESQLKMFRNQVTDLAIEFGEPLIKALRSGLDAVKPWLNNLADLAKKFSSLSTEQQQNIIKWGLMAAALGPALKLLGGGISVIGGLVKVIGGLSKGIGFLSGSAKYLANLPVGLNALAGSAGAAETAMAGASTSAGSLSGAFGALANPLGLIVGSIALATAGLVYFGNEKDKARIKTEEFGSQLSDTARGELRSFQKTVDETSTAVANFGTRAGDAEKVSGAFKKLYEEVAAAADKTNKRMEELGAKWGLSEEDIAKAKEKNAQVVSNTESMMNQINEIYQRHNGDASKFSQEEKEIILNNQNEMIKAKLSMMDLSAEQQKAALQALNGDVRNLNETQLNHTKDVLKKALDEEKKLYENSKSELKELLAGKAIDQETYNKKMQTLEANHTQTMEALGVKYYQVMQNLDAKVKARTGQSWNYWEEAKKVLEEYGLSYEVIGQKAAEASQKMGDSHSILAKYTSDMSKEVKEANDAWSLLVGNIDKNGNFQVKSNVKEVIGEATKSAEGWEQLQFIAKTADINSNARVTIAEALVESGKWKDMTLEEKQVIVKNQAGLQAIFDSETHLKTWNSMPAEVKELLMKNTDIMNKAEEASKALSNYEALKPKQKELLANDESVRKVVARSTDTLTTWNATTPFTKDLKADPTNVLNNGQLSIDKITAWNFASAETKSLDAVDNTSAAVGSAMLNVNSPKQETPIGINATDLTSPESASASAGINAIKQNFPIDINATNKTQGEANAASNAVNAVKQNSPIGINAQNQTGGVISSVWASLSSLPAFKFIDIITRHFTEQHAKGTDNHPGGLATVNDQRGTLYKELITLPDGTSFIPEGRNVVLPLPPGTKVMRAGKTRSLMNRLGIPNYEKGIGFEDTKISHLTRRFQEINTRNRIYNYSKSLSSTSSFDNHSDSNSSQAIVTELVSLKASVENLLGKLLDKDFNTYLDGQVMAENSYRYHGNIMRREGI*	hallmark_hmm	common_virus	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0015	cloud	indirect	.	.	.	GCA_902159415.1_01053
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1673205	1673543	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	14357	14695	GCA_000314775_2_1_1596	GCA_000314775_2_1_1596	-	2000650	.	.	hypothetical protein	MFEIKFKKAGVLKEFSKDYVNVEDNLLALEHQVRQTSLYENKEDLLNPAKHRELNEAYLDMFVKMYGEQFDADDLKGASVETLETLNDLYLAALGGKQAEKETTKEKKKKKG*	.	hypothetical_protein	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0016	shell	indirect	.	.	.	GCA_000421785.1_01815
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1673651	1674205	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	14803	15357	GCA_000314775_2_1_1597	GCA_000314775_2_1_1597	-	2000650	.	PFAM:PF06488.10	tail-tube-protein	MTKVKFGLRGFEYGVLNAQNLVVGETKKIPGIRTAKIDITNELNTIAADDGPYVVLSSGITGTTLEVSWLDLGSDARKDFYGIAVENGMEKYSKKMTPNDIACLFRTTGDDGKGIWVGLLKGKFSLPGMDLETKDGSPDPKNDTVSGSFVARGDEDEGLVIVVGREDNPQFQEAEFRKLVFPKS*	common_virus_hmm	common_virus	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0017	cloud	indirect	.	.	.	GCA_003944245.1_00202
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1674210	1674656	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	15362	15808	GCA_000314775_2_1_1598	GCA_000314775_2_1_1598	-	2000650	.	PFAM:PF05657.10	tail-component	MIAETEAYKLLVADEQLNQLFNQFRGKEFPGYKQGIFTYDIPEKPTNLKQKELAPFARIYLTYEAPHKYADDKIISMEQRITINFWCKNAKQAGQIAKRMDAVLEGSGFERYTANEKPRYMDDDIGLLMNVRKYRFFDWGDLEEMKGK*	hallmark_hmm	common_virus	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0018	cloud	indirect	.	.	.	GCA_001072385.1_00185
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1674657	1675028	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	15809	16180	GCA_000314775_2_1_1599	GCA_000314775_2_1_1599	-	2000650	.	PFAM:PF04883.11	type-I-neck-protein	MTKGLDLCLKNLTILEAKAPRVAREAVTEVAQEFKKELEVNTPVSDEPTLTRLSEDIRISNFKGGGDAPSKDIGFGRSTGWRAKFPDSGTIYQKAQDFEEKTINAVTPRAKEIYKQKIREVLK*	hallmark_hmm	common_virus	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0019	persistent	indirect	.	.	.	GCA_000026525.1_00889
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1675025	1675372	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	16177	16524	GCA_000314775_2_1_1600	GCA_000314775_2_1_1600	-	2000650	.	PDB:2KZ4_A	Head-tail-adaptor	MRTRNMNVRITFFQRVGGQNEDGEVLDFERKDLYTCWAEVSKTSIKDFRENATVTKASGLSEHKDTKTFLIRHQPKLPFDNSCYVEFDGNEYQIIAIERDYANKEIDLIKGVMVS*	hallmark_hmm	common_virus	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0020	cloud	indirect	.	.	.	GCA_019685795.1_00731
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1675372	1675674	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	16524	16826	GCA_000314775_2_1_1601	GCA_000314775_2_1_1601	-	2000650	.	CDD:TIGR01560	uncharacterized-phage-protein-(possible-DNA-packaging)	MEPKKNGFLEEVKLYCKIDYDFEDELLLELIESAREQICFAIDNKLQPEDLESYAKFRLAVKKQVKEEYEHRGMSADTMRYPLANGVLNIIHQLRTRKES*	hallmark_hmm	common_virus	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0021	cloud	indirect	.	.	.	GCA_000722845.1_00902
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1675842	1677011	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	16994	18163	GCA_000314775_2_1_1602	GCA_000314775_2_1_1602	-	2000650	.	PFAM:PF06673.10	Major-Capsid-protein	MFKEKMKELKAQITNIGAEITAKTDELKSVLNSDDLEKAREVRAEIDALKSQKEEVENNLKAYEIAEAGTGAHASGATHEVKAEGKTYRDSVNEWVRTKGAVADANLKLEGKDLLIPMNEAVNPIQDGLKKTDTGKVTSKEIVTTPIREVKTVIDLKQFVTVHKASKGEGSYPILKHATSKMASVEELEKNPALAKPDFTDVAWKVKTYRGAIPLSQEAIDDADVDLLAIVAEAANQIKVNTTNDVIGTILKTFEEKQATDLDAIKAILNVDLDPAYNVSFVVSQSFYQKLDTLKDKNGRYLLQDSIVSASGKAFLGHPVFVVADTMLGVAGEAKAFIGDVQRAVLFADRQELGLRWTDNEIYGQYLQAVVRFDVKKADAKAGYFVTMP*	hallmark_hmm	common_virus	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0022	cloud	indirect	.	.	.	GCA_019685795.1_00734
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1677048	1677722	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	18200	18874	GCA_000314775_2_1_1603	GCA_000314775_2_1_1603	-	2000650	.	PDB:1TG6_E	Putative-ATP-dependent-Clp-protease	MPKRIKMKGPLIPNNSQEAYDYFGLEAVSAKSITDSFPEDKSDIVLEVNSNGGLVTVGSEIYTALKSYPGNVTVEVTGMAASAASVAIMGADKVLISPTAQIMIHKALYGYVSGNSDDLDKASNALKSSDQAIVNAYVAKTGLEESVIIDMMRNETFMSASEAVEKGFADEVMTFDDVGAVASLENGLLPQAVIDDFYANRSKRKSEIQNMLREIEKEELLRGL*	common_virus_hmm	common_virus	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0023	cloud	indirect	.	.	.	GCA_000194765.1_00972
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1677679	1678908	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	18831	20060	GCA_000314775_2_1_1604	GCA_000314775_2_1_1604	-	2000650	.	CDD:TIGR01537	Portal-protein	MTFFQSLGSSKLSYDDYVSSVISGNSSPEYTGISALKNSDVLTAVSIIAGDVARFPLLKKDLMGNIEQDEDMNYLLNVKSTSNTSARQWKFAMTVNTILTGNSFSRILRDPISGKPLEFQFFRPSETTVEETDDHELIYTFRDRLNGREIRCGAGEVIHWKFFSHDTILGRSPLLSLGDEISLQNGGLNTLIKFFRDGFSSGIIKLKGAQLNGEARQKARMDFEKMREGSTGGSPLVFDDTQEYTPLEIDTNVLQLITSNNFSTAQIAKALRVPSFKLGVNSPNQSVAQLTEDYVTNDLPFYFDAITSELALKVFSDEERRKYRVDFDTRSVTGRNVDEIVKLVNNQILTPNQALIELGKERSSDPNMDRYQSSLNYVFLDKKEEYQSMKGGETRDAKENQDERSTDSE*	hallmark_hmm	common_virus	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0024	shell	indirect	.	.	.	GCA_000010005.1_00775
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1678971	1679552	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	20123	20704	GCA_000314775_2_1_1605	GCA_000314775_2_1_1605	-	2000650	.	.	hypothetical protein	MTKEQVKQPERPVYKKPLFWTTILFGFISFFLMIMVFVVDSHYVELTNALAKHNLYYSSKDKDIYNISNSQENTESSSSNDIILTKKIGEKITFEEGSIEVRGMDIADGKVTVAIILENNTDRKSSFNPKEFVAKAGDEALNYIGLQEVSGLTGQGEVKEVSPKSNAVFFLNYNLPKNNSSDFSMQIGKYLWK*	.	hypothetical_protein	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0025	cloud	indirect	.	.	.	GCA_000314775.2_01678
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1679757	1681499	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	20909	22651	GCA_000314775_2_1_1606	GCA_000314775_2_1_1606	-	2000650	.	PFAM:PF03354.14	Large-Terminase	MAYDYSCIHEKYHDVAYEYAKDVIDGKRIVSKKVYKACLRHLRDLVKIPNSDYDYFPNMAQNPIDFIEILPDVKTGKPYPLADFQKFILSSLYGWRKKSDTSIRRFKKALISLARKNGKTILVAGILLYEFLFGHNPAMSRQLFCTANDKTQAKIAFEMARKQLDALRAQDEDVRKATKRVREELRNLVDESYIRPLSRDTGAVDGFEPYVGVLDEFAASKTNEMIELLESGQGQLDNPLILIISTAGLDLNVPMHTIEYPYIEKILNEEVENDGYFAFIAEQDNEEEIADEKNWIKSNPILEVPALYDKIMNYLRNRRKVSLETGAVNEVLVKNYNMWRQSSEESYMDKESWAKAKIEAPDTRKRRVWLGVDVGRSSDLFSISPMVMMDDYWYADSFSFVATKYGLIAKEKRDGVSYTNLERMGECEITTLESGVIDDERVLEKIEEMVYGNDWELQGVYFDPYQFGSLLTMIEKRHPEWPLVQIPQTTMVLNMPTKQFRDDVRQGKIKHSGNQLLTMAINNAYTRVDNNGMRIDKNKNSNKIDPLDALLDAYAACYLEPFDGTGYWTNEKILEGGSLF*	hallmark_hmm	common_virus	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0026	cloud	indirect	.	.	.	GCA_000722845.1_00910
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1681633	1681815	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	22785	22967	GCA_000314775_2_1_1607	GCA_000314775_2_1_1607	-	2000650	.	.	hypothetical protein	MRYRPRYLKKKSHYKLNEFSTDCGRIVLNGKLLDGVTSYSIDWNSGELTRLTINMVGKMK*	.	hypothetical_protein	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0027	cloud	indirect	.	.	.	GCA_003944245.1_00191
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1681819	1682286	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	22971	23438	GCA_000314775_2_1_1608	GCA_000314775_2_1_1608	-	2000650	.	PFAM:PF05119.11	Small-Terminase	MGRKMKVVESNKKHMTKEEKIARKSIQEKASDGLDALQLTPPKHFDPIAKAEYKRVINDLRKLPLRNLDRAVLETYCTWYAVYKEVSRGLQKKGYVYENEKGSVVPNKMLYTLERATTNLMKAASQLGLTVDSRMKLYVPQVEEKKESIFDKFGG*	hallmark_hmm	common_virus	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0028	cloud	indirect	.	.	.	GCA_000722845.1_00913
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1682508	1682843	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	23660	23995	GCA_000314775_2_1_1609	GCA_000314775_2_1_1609	-	2000650	.	PDB:5H0M_A	HNH-endonuclease	MKPQKLTIFGGRRTSVDYDQRNNEYTEYNRTRWKYDREVKQFYNSTIWKRTSQQVLLEADYICAMCGDEATMTDHIISIKQDWSRRLDRSNLQASCKKCNDKKAIKEKYSY*	common_virus_hmm	common_virus	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0029	shell	indirect	.	.	.	GCA_000421785.1_01829
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1683236	1683655	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	24388	24807	GCA_000314775_2_1_1610	GCA_000314775_2_1_1610	-	2000650	.	pfam07374	Protein of unknown function (DUF1492). This family consists of several hypothetical, highly conserved Streptococcal and related phage proteins of around 100 residues in length. The function of this family is unknown. It appears to be distantly related to pfam08281.	MNKAKELLKELQDLDMDIQSRIDEINELEAGLLSSPKWTDVKVQGGQARKVDDVYTQLVVMKQAIEQDTKEVINRKLELGRMINRLKNPKSRSVLRMTYITKTYIEDICDNLRISKATYYRLRKQAESELEETIIDKVS*	mmseqs_cdd	common_virus	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0030	cloud	indirect	.	.	.	GCA_901543815.1_00117
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1683730	1683987	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	24882	25139	GCA_000314775_2_1_1611	GCA_000314775_2_1_1611	-	2000650	.	.	hypothetical protein	MILTLFISLWLAGVVIQYGWNNIIAATFEIQRITFWQAVGIDLLITAITGNLKGDTEKSWLEVLGKVIYWYLVLWALMCIVVGLL*	.	hypothetical_protein	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0031	cloud	indirect	.	.	.	GCA_000314775.2_01686
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1684030	1684518	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	25182	25670	GCA_000314775_2_1_1612	GCA_000314775_2_1_1612	-	2000650	.	TIGR01671	phage uncharacterized protein TIGR01671. This model represents an uncharacterized, well-conserved family of proteins found in bacteriophage and prophage regions of Gram-positive bacteria. [Mobile and extrachromosomal element functions, Prophage functions, Hypothetical proteins, Conserved]	MIPKFRAWDKARNEMNYKIMVGNCDTDDENWTCPIIWIEEKKDWLYFDDYECIMLSTGILDKNSQEIFEGDVLKFNDEWAEYCYEGYVDGSVEGINFVEVVRGEACFEFGKTKYPESSLFIRMEDEHLTFAELIKSKDFEFEIIGNIFENKDILEVINEKRK*	mmseqs_cdd	common_virus	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0032	cloud	indirect	.	.	.	GCA_022648595.1_02240
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1684515	1684718	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	25667	25870	GCA_000314775_2_1_1613	GCA_000314775_2_1_1613	-	2000650	.	PFAM:PF04936.11	host-nuclease-inhibitor	MVVDDKWNHDWALYAGDRFVTIGTLYEISEYTGISLDSLKIYSKKYHKTHFPNERALIRIEDEEGLG*	phrogs_hmm	hypothetical_protein	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0033	cloud	indirect	.	.	.	GCA_002093575.1_01031
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1684712	1684852	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	25864	26004	GCA_000314775_2_1_1614	GCA_000314775_2_1_1614	-	2000650	.	.	hypothetical protein	MNNNKLDCEDCKQVFLLEEKLDYDCIFQNGICSKCLVKRVERGIEW*	.	hypothetical_protein	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0034	cloud	indirect	.	.	.	GCA_000344275.1_01571
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1684849	1685388	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	26001	26540	GCA_000314775_2_1_1615	GCA_000314775_2_1_1615	-	2000650	.	cd17291	Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to S.MgeORF438P TRD1-CR1 and TRD2-CR2, and to Escherichia coli G5 S subunit (S.Eco16445ORF5013P ) TRD2-CR2 and Acetobacter pasteurianus IFO 3283-01 S subunit (S2.Apa3283ORF14230P) TRD1-CR1. The recognition sequences of Mycoplasma genitalium G-37 S subunit (S.MgeORF438P), Escherichia coli G5 S subunit (S.Eco16445ORF5013P), and Acetobacter pasteurianus IFO 3283-01 S subunit (S2.Apa3283ORF14230P) are undetermined. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one heteromeric enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It may also include TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases and type I DNA methyltransferases.	MKPDKITTCGLLEVCEFISGTRTKVTDGPYFIYGAGMKAKGTTDKFNCESDTIRLTRKGTVGAVYFHRDPFWIDEGGFKVEPKEMIDKRYLFHWLLMKREEIERCADGDNQPGLSVARLSKIKIDVPDMRYQLKVVKLLDEMSADLEFFIDNITQIKMLEGKVLSYYNEKIGTALEGEK*	mmseqs_cdd	nonviral_gene	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0035	cloud	indirect	.	.	.	GCA_019013055.1_00276
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1685385	1686302	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	26537	27454	GCA_000314775_2_1_1616	GCA_000314775_2_1_1616	-	2000650	.	pfam02384	N-6 DNA Methylase. Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The R-M system is a complex containing three polypeptides: M (this family), S (pfam01420), and R. This family consists of N-6 adenine-specific DNA methylase EC:2.1.1.72 from Type I and Type IC restriction systems. These methylases have the same sequence specificity as their corresponding restriction enzymes.	MTFVEHNNRQKANKFAEYVTGKPLREYLANKVKQYCGENASVFDGAAGSGQLEQFISMTDFHAVEIQQESCEALKTNFPHAVVHNQSFFTYQSDIQVDAIAMNPPYSLKLKDLPEEDQQAIKELYPWKKSGVVDDIFLLKSLTYTKRYGFYIMFPGIAYRQSEKKMRELVGNNLVELNVIQNGFEDTSINVIFLVIDKEKNSPEISKEIYDCKTKNVEYEESDTLDSDFRWVAPSKPVEKEEIDIDQVNAELDQMAINHLEKHLASQLILIQLFNADVDLKSFITKCHKVLDDYLLMYNFAVGVE*	mmseqs_cdd	nonviral_gene	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0036	persistent	indirect	.	.	.	GCA_001047275.1_00611
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1686299	1686559	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	27451	27711	GCA_000314775_2_1_1617	GCA_000314775_2_1_1617	-	2000650	.	pfam07116	Protein of unknown function (DUF1372). This family consists of several Streptococcus bacteriophage sequences and related proteins from Streptococcus species. Members of this family are typically around 100 residues in length and their function is unknown.	MKRFIAIWILVSAGLNIWQMGRIAELEQKRPIIVYKADNQGAEIKGRVIHREKIGDLYTITVQNYGIFVITKEVYDKVKIGDEVRI*	mmseqs_cdd	common_virus	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0037	cloud	indirect	.	.	.	GCA_000018985.1_01848
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1686556	1687065	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	27708	28217	GCA_000314775_2_1_1618	GCA_000314775_2_1_1618	-	2000650	.	pfam07852	Protein of unknown function (DUF1642). The sequences making up this family are derived from various hypothetical phage and prophage proteins. The region in question is approximately 140 amino acids long.	MNVQRLIEKYKKLEGVWDAEGAELARQIFLQDLEQLDEPEKVQIPQFVAEFIEFKKKNNFHVYGAMRTIEDHYDKKVPGWFYEGNIEKFCLAWIFGYEVEKEKRYLVKFKGFNPSYIILKYHPYDKTWFLGREQEYNFFRQHHTRKELEEAGFGWVFDCLGIEIEEVTD*	mmseqs_cdd	common_virus	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0038	cloud	indirect	.	.	.	GCA_003944345.1_01010
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1687077	1687592	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	28229	28744	GCA_000314775_2_1_1619	GCA_000314775_2_1_1619	-	2000650	.	PFAM:PF02075.16	Holliday-junction-resolvase	MKNLTLSLDISTTATGWALFEGSILVESGVLKHKSKSFFERGRFMAGELRAIQSRALQKYDCHFESIVVEKNSVMGPNQQSMISIGIVTGIILGRLIADNVYFVNVSTWRKHWKFSYKDRSKKSMKLQAVAKVSETFNLNVKDDEADAILIGSYFVNYGREFGELENHKIS*	phrogs_hmm	hypothetical_protein	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0039	cloud	indirect	.	.	.	GCA_019929305.1_01844
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1687589	1687921	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	28741	29073	GCA_000314775_2_1_1620	GCA_000314775_2_1_1620	-	2000650	.	.	hypothetical protein	MLNKIDIPGTTITLEIVDKTITITNKIEYDMQMHFRNADADTSLDASGDVFEPLYWLDIKATPKVPTEYHTSLGIKREKRHLAELQKFFEFVEDNKRNLFDICGIKGELQ*	.	hypothetical_protein	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0040	cloud	indirect	.	.	.	GCA_019929305.1_01843
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1687935	1688609	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	29087	29761	GCA_000314775_2_1_1621	GCA_000314775_2_1_1621	-	2000650	.	PDB:5HEK_A	Adenine-specific-DNA-methyltransferase	MKLFLNEDCMDVMKRYPDNYFDLAIVDPPYFSGPEQREFYGNKISPIGVHRLYGKTTKWEIPGKDYFDELFRVSKNQIIWGVNYFNYSFGSGRIVWDKVNTHSSFSDCELAYSSLHDSTRLFRYMWNGMMQGKSISEGHIQQGNKALNEVRIHPTQKPINLYFWLLQNYAKDGDKILDTHVGSASSLIACQELGFEYVGCELDKDIFNLAQQRLENYKSQIKLF*	common_virus_hmm	common_virus	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0041	cloud	indirect	.	.	.	GCA_030220105.1_00078
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1688619	1689566	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	29771	30718	GCA_000314775_2_1_1622	GCA_000314775_2_1_1622	-	2000650	.	PDB:3ME5_A	Cytosine-specific-methyltransferase	MKFLDLFAGIGGFRLGMESAGHECIGFCEIDKFARASYRAIHNTKGEIELHDITAVSDEFVRGIGRVDIICGGFPCQAFSIAGARRGFEDTRGTLFFEIARFASILKPKYLFLENVKGLLNHDKGNTFETILSALDELGYDVEWQVLNSKNFGVPQNRERVFIIGHSRRYRSRFLFPLSGESQSTSSQSVVKIGNVNPSGNGMNGEVYQADGLAPTLTTNKGEGVKIIQRAHGYNQGGEHDIAPTLTRNSYQENNYLSDGFRIRKLTPRECWRLQGFPDWAFDKAQEVNSNSQLYKQAGNSVTVSVIAAIAKELK*	common_virus_hmm	common_virus	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0042	cloud	indirect	.	.	.	GCA_008693785.1_01989
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1689705	1690535	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	30857	31687	GCA_000314775_2_1_1623	GCA_000314775_2_1_1623	-	2000650	.	PDB:3L0A_A	Putative-exonuclease	MEELTQENYYQDTSYLTNSRFKRYQQCQAKAFAIDSGQWVEERDETPLLLGNYVHSYFESEEAHQQFMDENGDMLLAKTGKNKGNLKSDFVIGDKMIESLKDDEGFNLLYHGYSSDEVQKELIVYGEIEGVPVKGKLDSVNLSRGYFVDLKTMKSIYSEEWSAELKKRVPAAVNNILNFGYHGQLGLYRELLKQMTGNDFRPYIVAVSKENVPDREILKIDDEWLDEGLEKIKSEIVEVWNVIQSKQKPKKCGHCDYCRSQKKLDAVVTLNDLIEM*	common_virus_hmm	common_virus	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0043	cloud	indirect	.	.	.	GCA_013822985.1_02194
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1690539	1691510	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	31691	32662	GCA_000314775_2_1_1624	GCA_000314775_2_1_1624	-	2000650	.	PFAM:PF03837.13	RecT-protein	MTNELTQKQITSPVAARIGEMQNEGLMIAQNYSVSNALSSAYYALKNSSSGNLLQQCTQDSIYNALLDMVTQGLSPAKTQCYFIPYGNTVKLTRSYFGTMKVVKQLPEVKDIYAQIIFKGDEFEAENVDGRWKFVSHKSSWKNQDNPIEGAYCVIEKTDGEKILTIMTKKEIDKSWAQAKTKNVQNNFPQEMAKRTVINRAAKQFFNTSDDNDLFIDAVNRTTENEYENDRQMKEAEPVRDEVETLDDILKAPSTPTEPDNVVDGEITEETKTPPKTAKKTANSDELASTEYPADEIPDFDEETGEVLEEISLFEGNTINVKE*	common_virus_hmm	common_virus	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0044	shell	indirect	.	.	.	GCA_000010005.1_00924
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1691507	1691686	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	32659	32838	GCA_000314775_2_1_1625	GCA_000314775_2_1_1625	-	2000650	.	.	hypothetical protein	MIEELVAEIDNWRADYIHIGRDMGQIINEQQDVILKLQNENRRLKRENWNLKRTKGRKK*	.	hypothetical_protein	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0045	cloud	indirect	.	.	.	GCA_028326945.1_01585
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1691683	1691805	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	32835	32957	GCA_000314775_2_1_1626	GCA_000314775_2_1_1626	-	2000650	.	.	hypothetical protein	MLMFDYDRDMMQPPEPREELDLSEYVYIGCGRYRYVGDEI*	.	hypothetical_protein	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0046	cloud	indirect	.	.	.	GCA_030546225.1_02016
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1691792	1691935	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	32944	33087	GCA_000314775_2_1_1627	GCA_000314775_2_1_1627	-	2000650	.	.	hypothetical protein	MTRIELENRVWLLANHEEKNELLDLGLTSKARYVKRVLELGKVYAHV*	.	hypothetical_protein	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0047	shell	indirect	.	.	.	GCA_000307535.1_01231
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1691922	1692182	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	33074	33334	GCA_000314775_2_1_1628	GCA_000314775_2_1_1628	-	2000650	.	.	hypothetical protein	MFKALKAIKKIKQLQKEMHAFSLAFLALQDMGLMPETERSKAKAQTMHDVSHVLKDVLDGKSVDEAMKRLNSDVKIEEVEQEDDQN*	.	hypothetical_protein	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0048	cloud	indirect	.	.	.	GCA_000314775.2_01703
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1692175	1692378	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	33327	33530	GCA_000314775_2_1_1629	GCA_000314775_2_1_1629	-	2000650	.	.	hypothetical protein	MKLLTKLKLSLEGIIKEVSLDWRVVAVELNEDLLEERKRRFMCEQENYDLKQQLAVYKEKEQGEQYV*	.	hypothetical_protein	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0049	shell	indirect	.	.	.	GCA_000252245.2_00327
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1692378	1692515	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	33530	33667	GCA_000314775_2_1_1630	GCA_000314775_2_1_1630	-	2000650	.	.	hypothetical protein	MEVTVYAYGRKLEPDEPIIIPENHRFYDVWNGIANEMLDKEEEVA*	.	hypothetical_protein	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0050	cloud	indirect	.	.	.	GCA_002289235.2_01965
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1692590	1692808	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	33742	33960	GCA_000314775_2_1_1631	GCA_000314775_2_1_1631	-	2000650	.	.	hypothetical protein	MPLSSVKTQLRDAPCQQVTTEERKQAIEQFESQFYKLSTLLKERLLITTDERFTNKMNELTYYATNGSVYTT*	.	hypothetical_protein	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0051	shell	indirect	.	.	.	GCA_000221985.1_01781
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1692747	1693601	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	33899	34753	GCA_000314775_2_1_1632	GCA_000314775_2_1_1632	-	2000650	.	PDB:4M4W_K	Replicative-helicase	MQVVSSKELQERALQIETLKQQCPKHEGVYMWRSVNPCTRNTLTYCPECVQETINQNASEQLAIAEAQIRDTRSYSLFMKESIIPNDLKNATVGNFEIHTEQDAEAVNFAKRVTADYVKERYEGNTIISGPPGVGKSHLAVGIAKTLNESFQMIQARKSVVYMPSMELFSQMQEAFQYKDSKWEQRSVVKFLQSVDFLILDDLGKESSVGNEIRQGNNWMQKILYQILENRTNTIITTNFEGKHLKELYEQSLVDRITKGNMKTNAFKFSKDTASRRSLSASDY*	rep_hall_hmm	common_virus	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0052	cloud	indirect	.	.	.	GCA_019048525.1_00662
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1693611	1694429	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	34763	35581	GCA_000314775_2_1_1633	GCA_000314775_2_1_1633	-	2000650	.	PFAM:PF09681.9	phage-replisome-organiser	MKISEVKNNAFYQMPQWLYEPPYNALSDKAKQIYMFLFDRRTLSIQNKWFDEKGDVFVYFTNEQLMEKLNCSNKPIIQAKKELHDIGLLREVRQGVNKPNRLYIFGSVESTRQEVSKVHEGSVESTRQEVSKVHTIKTDNIKTNISRLSEAEGAGANTLYSIEDAPAENDLGIVHDWIFSEFGRYPTPFEIEDLKAFLQDHSKEVIKLAIKECVGNGKPYFKYLESILRDWKQKGLVTAELVENRQKPARSSAKSNGRLKLSDDGFDPRLGF*	rep_hall_hmm	common_virus	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0053	cloud	indirect	.	.	.	GCA_946222355.1_00787
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1694430	1694639	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	35582	35791	GCA_000314775_2_1_1634	GCA_000314775_2_1_1634	-	2000650	.	PFAM:PF13744.5	transcriptional-repressor	MVFKMWDKIEQQLKSKDWSMYRLAKESGVHPSNFSNLKAGRLKEMSWTNMCKIADALEVSLDDFRKEKE*	phrogs_hmm	hypothetical_protein	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0054	cloud	indirect	.	.	.	GCA_030011735.1_01265
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1694775	1694996	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	35927	36148	GCA_000314775_2_1_1635	GCA_000314775_2_1_1635	+	2000650	.	.	hypothetical protein	MAKLTKEDASEVSKEIINDAIPVIEDMLDEVFKKYPIDMEVRKAILHSVLVAHKLSTETTVSLLVQLVNSQNN*	.	hypothetical_protein	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0055	cloud	indirect	.	.	.	GCA_000314775.2_01709
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1694950	1695087	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	36102	36239	GCA_000314775_2_1_1636	GCA_000314775_2_1_1636	-	2000650	.	.	hypothetical protein	MRPKRYPYSGKKESAFVKADNELVEKLLRNTSYFESLLAERVKRP*	.	hypothetical_protein	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0056	shell	indirect	.	.	.	GCA_009495735.1_00142
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1695098	1695289	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	36250	36441	GCA_000314775_2_1_1637	GCA_000314775_2_1_1637	-	2000650	.	PFAM:PF10078.8	DNA-binding-protein	MPDIANGRERVNAFLKEKGIKKATLAVAYGFKRQEVTNILSGTTKGPRANSFILQVIEDYGIE*	phrogs_hmm	hypothetical_protein	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0057	cloud	indirect	.	.	.	GCA_025909465.1_01171
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1695587	1695949	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	36739	37101	GCA_000314775_2_1_1638	GCA_000314775_2_1_1638	+	2000650	.	PDB:1PRA_A	Repressor-protein	MFETFEKIKILAKKQGISLNTLEERVGLGKNYIYSLKNKKTPSAEHIAKIADYFNVSTDYLLGRTDNPAIANSKEQFFFEGKEVDVEELASTAMRFNGKPLTEEDKKAIQNIIEIYLRKQ*	common_virus_hmm	common_virus	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0058	cloud	indirect	.	.	.	GCA_000161955.2_00320
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1695971	1696351	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	37123	37503	GCA_000314775_2_1_1639	GCA_000314775_2_1_1639	+	2000650	.	PDB:3DTE_A	IrrE-protein	MTEKEFSQNLGIGIEIFEDGLFPEEAFYIPALKTMFLSDAISDEKRVQVALHEIGHRNHAPDTYRLFREKCELEANRNMIHHLMKAELDIAEDANAFNYLVFMEKYNLKTIADETMVKEEYLALVN*	common_virus_hmm	common_virus	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0059	cloud	indirect	.	.	.	GCA_900474885.1_01209
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1696368	1696661	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	37520	37813	GCA_000314775_2_1_1640	GCA_000314775_2_1_1640	+	2000650	.	.	hypothetical protein	MKVGMRTPNLKKRVSSRTTGAINRKVKRATSPYYGQKGIGWVKDPKRAAYNNLYNKITFGFGPDEGCLFGCGCVSIIVFIAMMVFIYNIISTILSIN*	.	hypothetical_protein	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0060	cloud	indirect	.	.	.	GCA_023109405.1_00290
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1696805	1697524	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	37957	38676	GCA_000314775_2_1_1641	GCA_000314775_2_1_1641	+	2000650	.	.	hypothetical protein	MGIFNFLFGSKKQKESRQISVTIPQSKEFDYYRPEYFRILNSRPNMHEIYGRGFDFPKYNDRFITQEGYPLRELLLLVWWGKTKSGRKSTISIPQYFFYDYNLNAEKITRKFKDESLLYDDDGKTLLTEEGKVIADRYSSLWEIHSAKEYPTNLDIDFPTWDKNKFDLMMCQMQIRYHSEYANFCKELVNYFNSLNAPTSALEIHNEINRYINEMNSNLARVNDLKEKLIILQDRVDDI*	.	hypothetical_protein	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0061	cloud	indirect	.	.	.	GCA_902167825.1_00018
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1697664	1699091	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	38816	40243	GCA_000314775_2_1_1642	GCA_000314775_2_1_1642	+	2000650	.	PDB:4BQQ_A	Integrase	MKTTNKVAIYVRVSTSYQAEEGYSIDEQKDKLEAYCKIKDWKIYDIYVDGGFSGSNTKRPELERLIDDTKRKRFDIVLVYKLDRLSRSQKDTLFLIEDVFLKNDVAFISLQENFDTSTPFGKASIGMLSVFAQLEREQIKERMILGKEGRAKKGKAMSWTTIPFGYDYSKETGILSVNPTQALIVNRIFNEYLNGKSVVKIIRDLNSEGHVGRKRPWGETITKYLLKNETYLGIVKYRGQKYEGQHEPIISQELFELVQLELQKRQIDALKRNNNPRPFQAKYMLSGLLKCGYCGGSLGLYVTSKNRKGKAYQRYQCRHRFDKDKSKRCNSKWYDKQELEEKVIERLSKIKLEPKYRKEMLAKNDETMKVEEIKEQLKKLNNRLDKLTELYLDEIITRKELNAKNEKLKIEKAFLEEQLESKKKNTINIRQRKLARLLKDFNPEKLSYEDASKIVKSVINEIIVTKEEMTITLDF*	common_virus_hmm	common_virus	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0062	cloud	indirect	.	.	.	GCA_018378045.1_01200
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1699225	1699986	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	40377	41138	GCA_000314775_2_1_1643	GCA_000314775_2_1_1643	-	2000650	.	cd05346	classical (c) SDR, subgroup 5. These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	MAKNVVITGATSGIGEAIARAYLEQGENVVLIGRRTDRLEVLKSEFAATYPNQTVWTFPLDVTDMAMVKTVCSDILETIGQIDILVNNAGLALGLAPYQDYEELDMLTMLDTNVKGLMAVTRCFLPEMVKANRGHIINMGSTAGIYAYAGAAVYSATKAAVKTFSDGLRIDTIATDIKVTTIQPGIVETDFSRVRFHGDKERAATVYQGIEALQAQDIADTVVYVTSQPRRVQITDMTIMANQQATGFMVHKK*	mmseqs_cdd	nonviral_gene	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0063	persistent	indirect	.	.	.	GCA_000022905.1_00092
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1700028	1700654	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	41180	41806	GCA_000314775_2_1_1644	GCA_000314775_2_1_1644	-	2000650	.	cd02796	tRNA-binding-domain-containing prokaryotic phenylalanly tRNA synthetase (PheRS) beta chain.  PheRS aminoacylate phenylalanine transfer RNAs (tRNAphe).  PheRSs belong structurally to class II aminoacyl tRNA synthetases (aaRSs) but, as they aminoacylate the 2'OH of the terminal ribose of tRNA they belong functionally to class 1 aaRSs.  This domain has general tRNA binding properties and is believed to direct tRNAphe to the active site of the enzyme.	MIFTYNKEHVGDVLMVIVKNSGDAKLDVERKGKVARVFLKENRETVAWNIFEVSSLFEIAERGQVFLTDEQVARLNQELQAEGFAEEIINDKEPKFVVGEIVEMVAHPDSDHLNICQVAVASDKTVQIVAGAPNARVGLKTIVALPGAMMPKGNLIFPGELRGEKSFGMMCSPRELHLPNAPQKRGIIELSEDQVIGTPFDPAKHWTA*	mmseqs_cdd	nonviral_gene	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0064	persistent	indirect	.	.	.	GCA_000160215.1_02498
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	CDS	1700670	1700987	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	41822	42139	GCA_000314775_2_1_1645	GCA_000314775_2_1_1645	-	2000650	.	cd02947	TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	MITPNSIEELAGFVEQDGKKVFLFVADWCGDCRYIYPALPEIEETNPEFTFIRVDRDQYLDLAKLWDVYGIPSLVVLEKDKEIGRFVNRDRKSKEQINNFLAGLK*	mmseqs_cdd	common_virus	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_CDS_0065	persistent	indirect	.	.	.	GCA_000020605.1_02820
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	tRNA	1682907	1682979	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	24059	24131	tRNA-Lys	tRNA-Lys	-	2000650	.	tRNAscan-SE score: 64.5	Lys		tRNAscan-SE	.	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_tRNA_0002	infer_flexible	indirect	.	.	.	no_good_uniDB_hits
GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote	cenote	tRNA	1681525	1681595	GCA_000314775.2	KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775.2_KB373321.1	GCA_000314775.2|KB373321.1	GCA_000314775_2_1	GCA_000314775_2_1@C113	22677	22747	tRNA-Trp	tRNA-Trp	-	2000650	.	tRNAscan-SE score: 41.8	Trp		tRNAscan-SE	.	C113	42139	1658849	1700988	GCA_000314775.2|KB373321.1@region_1658850_1700988@tool_cenote_tRNA_0001	infer_flexible	indirect	.	.	.	no_good_uniDB_hits