core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_000339475.1|AHSU01000044.1@region_1_9141@tool_cenote	cenote	CDS	2	505	GCA_000339475.1	AHSU01000044.1	GCA_000339475.1|AHSU01000044.1	GCA_000339475.1_AHSU01000044.1	GCA_000339475.1|AHSU01000044.1	GCA_000339475_1_43	GCA_000339475_1_43	3	506	GCA_000339475_1_43_1	GCA_000339475_1_43_1	-	9141	.	PF09491.10	AlwI restriction endonuclease	MDSFNKYLEKSEYANSFWALDEETFESLPKGQILLEDLDKNLEARARHYTSNLTKIGFAYNNRKISTVGKSYLNEKVGQLDTFEKLLPINSINLILLRQLSKLRVYSKDGSMYYSPFNLLLYTLLKYNRISDSVLFKMIELLNPKFPVNPDTFLDRVLTTTFEEVQLS	hhsuite_tools	hypothetical_protein	NaN	.	0	9141	GCA_000339475.1|AHSU01000044.1@region_1_9141@tool_cenote_CDS_0001	.	unmatched_CDS	none	0	0	.
GCA_000339475.1|AHSU01000044.1@region_1_9141@tool_cenote	cenote	CDS	834	1139	GCA_000339475.1	AHSU01000044.1	GCA_000339475.1|AHSU01000044.1	GCA_000339475.1_AHSU01000044.1	GCA_000339475.1|AHSU01000044.1	GCA_000339475_1_43	GCA_000339475_1_43	835	1140	GCA_000339475_1_43_2	GCA_000339475_1_43_2	+	9141	.	TIGR02384	addiction module antitoxin, RelB/DinJ family. Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. The resulting model appears to describe a narrower set of proteins than pfam04221, although many in the scope of this model are not obviously paired with toxin proteins. Several toxin/antitoxin pairs may occur in a single species. [Cellular processes, Toxin production and resistance, Mobile and extrachromosomal element functions, Other]	MTKKMFQKRVDSELLDEVSVLYKSLGTSVGDAFVMFLQKSKEVNGLPFDLRKQVHAISDNPLERLALANSNVIKVTASNPEAIADFFDEDYPEYEERHGQL*	mmseqs_cdd	nonviral_gene	NaN	.	0	9141	GCA_000339475.1|AHSU01000044.1@region_1_9141@tool_cenote_CDS_0002	shell	direct	high	305	0.997	GCA_000339475.1_01318
GCA_000339475.1|AHSU01000044.1@region_1_9141@tool_cenote	cenote	CDS	1126	1458	GCA_000339475.1	AHSU01000044.1	GCA_000339475.1|AHSU01000044.1	GCA_000339475.1_AHSU01000044.1	GCA_000339475.1|AHSU01000044.1	GCA_000339475_1_43	GCA_000339475_1_43	1127	1459	GCA_000339475_1_43_3	GCA_000339475_1_43_3	+	9141	.	PFAM:PF02452.16	MazF-like-growth-inhibitor	MDNYNPYDILVATIAFSDGTGAKRRPALVIANNEEVIRTYRITSQYSRKSSYIRSKYFEIKEWEEAGLVKPSWIDTVQLYDLDVELVQVRLIGKLTENDQQRFEKFLREN*	phrogs_hmm	hypothetical_protein	NaN	.	0	9141	GCA_000339475.1|AHSU01000044.1@region_1_9141@tool_cenote_CDS_0003	shell	direct	high	332	0.997	GCA_000339475.1_01319
GCA_000339475.1|AHSU01000044.1@region_1_9141@tool_cenote	cenote	CDS	1570	1842	GCA_000339475.1	AHSU01000044.1	GCA_000339475.1|AHSU01000044.1	GCA_000339475.1_AHSU01000044.1	GCA_000339475.1|AHSU01000044.1	GCA_000339475_1_43	GCA_000339475_1_43	1571	1843	GCA_000339475_1_43_4	GCA_000339475_1_43_4	+	9141	.	PFAM:PF07471.11	DNA-packaging-protein	MQVILPEEQTKEIQLFVANLIKNKIETVKEDSGQISPFLNKKQTCQYLGISNNTLDIWIRKGMPHIRIGKTIRFDKDSIRRWMIQLENHF*	hallmark_hmm	common_virus	NaN	.	0	9141	GCA_000339475.1|AHSU01000044.1@region_1_9141@tool_cenote_CDS_0004	shell	direct	high	272	0.996	GCA_000339475.1_01320
GCA_000339475.1|AHSU01000044.1@region_1_9141@tool_cenote	cenote	CDS	1897	3120	GCA_000339475.1	AHSU01000044.1	GCA_000339475.1|AHSU01000044.1	GCA_000339475.1_AHSU01000044.1	GCA_000339475.1|AHSU01000044.1	GCA_000339475_1_43	GCA_000339475_1_43	1898	3121	GCA_000339475_1_43_5	GCA_000339475_1_43_5	+	9141	.	PDB:1Z19_B	Integrase	MTITKTSNGSYRLKLYVPTEARPSLGISGNYYDKRFKTKKEAKEAELQILININTIQKGGALPHQAINGDILFKDFYHNVWWEAYKAGQTTSTNKPPTLPTVNNTETVFRLHILPMFGNYSIKFLNQNKTVVLNLMTAKANEYANFKVIRSYVNSIFDWAEELEYIEMNRLSKTISRIKATKKIKLQEAKRDEDLYLTLSELQEWFEAFQEDLENKRLSLKDYVLFFTTFILNDRKSESYALQWKHILFETSEIILIQALDKYKNPKSTKGEKKTIFGIPQELSILLHQWKAQQRVELAKFGIIQTPEQYVFTYIDTKGNVNSPLHADYLNNKMKSVERRHKNLRHSTPHMLRHTGATLAKQAGMSLESISEALTHSDLSTTKIYVNTSNVVPLSAGEAAYRELKNK*	common_virus_hmm	common_virus	NaN	.	0	9141	GCA_000339475.1|AHSU01000044.1@region_1_9141@tool_cenote_CDS_0005	shell	direct	high	1223	0.999	GCA_000339475.1_01321
GCA_000339475.1|AHSU01000044.1@region_1_9141@tool_cenote	cenote	CDS	3096	3983	GCA_000339475.1	AHSU01000044.1	GCA_000339475.1|AHSU01000044.1	GCA_000339475.1_AHSU01000044.1	GCA_000339475.1|AHSU01000044.1	GCA_000339475_1_43	GCA_000339475_1_43	3097	3984	GCA_000339475_1_43_6	GCA_000339475_1_43_6	-	9141	.	.	hypothetical protein	MKIELIYIYNLLLMMLYAITMAFSVSFFIREKNKKKKTLYLVTSLYLLFFILDNSVISMTEIISSFASNYNSSFQGTSFIKTTVFLVNNFCQLWIVHYLSKRKMPWWEYLILLAIFLFMLLPSLPSLPNTATKVYLYYLPNQLLLFYTGLIAFFNSKKENVSKLGKKYLKLIAFLAMIASVAILIEDTFVIFTVDQYSIFNTKIMNRNVSEDLFSIIACWLLLYYFLKDYPLLEKRNQVLRKLVKLHNSQNVKNRFTTTITDTQCLPHWVFFRALFEKLTSKFTLFSPYLFLSSL*	.	hypothetical_protein	NaN	.	0	9141	GCA_000339475.1|AHSU01000044.1@region_1_9141@tool_cenote_CDS_0006	shell	direct	high	887	0.999	GCA_000339475.1_01322
GCA_000339475.1|AHSU01000044.1@region_1_9141@tool_cenote	cenote	CDS	4222	5241	GCA_000339475.1	AHSU01000044.1	GCA_000339475.1|AHSU01000044.1	GCA_000339475.1_AHSU01000044.1	GCA_000339475.1|AHSU01000044.1	GCA_000339475_1_43	GCA_000339475_1_43	4223	5242	GCA_000339475_1_43_7	GCA_000339475_1_43_7	+	9141	.	TIGR04384	putrescine carbamoyltransferase. Members of this family are putrescine carbamoyltransferase (EC 2.1.3.6). There is some overlapping specificity with ornithine carbamoyltransferase (EC 2.1.3.3). The gene regularly is found next to agmatine deiminase and a carbamate kinase, suggesting a conserved catabolic agmatine deiminase pathway. [Energy metabolism, Amino acids and amines]	MMKKTDYITTEDFSKEELLKLVDLSLKIKACIKNGYYPPLLEHKSLGMIFQQTSTRTRVSFETAMSQLGGHAQYLAPGQIQLGGHETIEDTSTVLSRLDDILMARVERHQSVVDLARCASIPVINGMSDYNHPTQELGDLCTMIEHLPAGKKLEDCKVVFVGDATQVCFSLALITTKMGMEFVHFGPKGFQLNDMHKEKLDKICERSGGKYTVTDNEDAIEGADFLYTDVWYGLYEAELSEEERMQIFFPKYQVDSQMMAKAGADCKFMHCLPATRGEEITDEVMDGPHSICFDEAENRLTSIRGLLVYLLRDYREKNPYDLVKQEKAKEELETFLKPE*	mmseqs_cdd	nonviral_gene	NaN	.	0	9141	GCA_000339475.1|AHSU01000044.1@region_1_9141@tool_cenote_CDS_0007	shell	direct	high	1019	0.999	GCA_000339475.1_01323
GCA_000339475.1|AHSU01000044.1@region_1_9141@tool_cenote	cenote	CDS	5339	6697	GCA_000339475.1	AHSU01000044.1	GCA_000339475.1|AHSU01000044.1	GCA_000339475.1_AHSU01000044.1	GCA_000339475.1|AHSU01000044.1	GCA_000339475_1_43	GCA_000339475_1_43	5340	6698	GCA_000339475_1_43_8	GCA_000339475_1_43_8	+	9141	.	COG0531	Amino acid transporter [Amino acid transport and metabolism]. 	MEGKKKFSLFSAVLSVICVVFVAEAAAPVAAIGNSQFFWWLFLLIAFLLPYGLISSELGTTYIGDGGIYDWVTKAFGHKWGSRVAWYYWINFPLWLASLAVMTPGLLTTVTGHNFSTVTAIIVELIFIWLVIWISFYPVSDSIWILNGAAVIKMLLALLVGGLGLYVALTKGMANEMTLKSLLPSFNLNSLSYISVIIFNLLGFEVICTFAGDMENPKKQIPQSIIVAGLVIAAIYIFSAFGIGVSIPTDKISTSSGMMDSFKLLTGSTGGWFIMTMAFLFLLTLFGNMISWSLGVNNTASYAAENGDMPQFFAKRSRKRDMPIGAALANGIVASIVVVIAPFLPNQDLFWAFFSLNLVMFLLSYVPVFPAFFKLRKIDPDTPRPFKVSGNDSFLRLLVILPMILIIISLIFTALPLAFDSETLASKLPITIGSLIFIGIGELIIIIKKIKK*	mmseqs_cdd	nonviral_gene	NaN	.	0	9141	GCA_000339475.1|AHSU01000044.1@region_1_9141@tool_cenote_CDS_0008	shell	direct	high	1358	0.999	GCA_000339475.1_01324
GCA_000339475.1|AHSU01000044.1@region_1_9141@tool_cenote	cenote	CDS	6707	7816	GCA_000339475.1	AHSU01000044.1	GCA_000339475.1|AHSU01000044.1	GCA_000339475.1_AHSU01000044.1	GCA_000339475.1|AHSU01000044.1	GCA_000339475_1_43	GCA_000339475_1_43	6708	7817	GCA_000339475_1_43_9	GCA_000339475_1_43_9	+	9141	.	PRK13551	agmatine deiminase; Provisional	MAKRIKNTTPKQDGFRMPGEFEKQKQIWMLWPWRNDNWRLGAKPAQKAFLEVAEAISEFEPVSLCVPPLQYENALARVSELGSHNIRIIEMTNDDAWIRDCGPTFLVNDKGDLRAVDWEFNAWGGLVDGLYFPWDQDALVARKVCEIEGVDSYKTKDFVLEGGSIHVDGEGTVLVTEMCLLHPSRNPHLTKEDIEDKLKDYLNCEKVLWVKDGIDPYETNGHIDDVACFIRPGEVACIYTDDKEHPFYQEAKAAYDFLSQQTDAKGRPLKVHKMCVTKEPCYLQEAATIDYVEGSIPREEGEMAIASYLNFLIVNGGIILPQYGDENDQLAKQQVQEMFPDRKVVGVRTEEIAYGGGNIHCITQQQPAT*	mmseqs_cdd	nonviral_gene	NaN	.	0	9141	GCA_000339475.1|AHSU01000044.1@region_1_9141@tool_cenote_CDS_0009	shell	direct	high	1109	0.999	GCA_000339475.1_01325
GCA_000339475.1|AHSU01000044.1@region_1_9141@tool_cenote	cenote	CDS	7848	8798	GCA_000339475.1	AHSU01000044.1	GCA_000339475.1|AHSU01000044.1	GCA_000339475.1_AHSU01000044.1	GCA_000339475.1|AHSU01000044.1	GCA_000339475_1_43	GCA_000339475_1_43	7849	8799	GCA_000339475_1_43_10	GCA_000339475_1_43_10	+	9141	.	PRK12686	carbamate kinase; Reviewed	MAKRKIVIALGGNAILSRDASAKAQQAALAQTAKYLVQFIKNGDDLVITHGNGPQVGNLLLQQTAADSYDNPALPLDTLVAMTEGSISYWLQNALINELRKQSIDKEVVSMVTEVLVSAEDPAFDHPSKPIGPFLSEEEAYLQEKMTGATYKVDAGRGWRKVVASPKPIAIQEIATIKSLLNTGAVVITAGGGGIPVIEDPKTKELMGVEAVIDKDFASQLLAEKIKADLFIILTGVDHVYIHYGQPNQEKLEKVTASQLKAWKDQQQFAAGSMLPKVEAAIAFVEAHPSGKAIITSLENIANVISEGSGTQITAN*	mmseqs_cdd	nonviral_gene	NaN	.	0	9141	GCA_000339475.1|AHSU01000044.1@region_1_9141@tool_cenote_CDS_0010	shell	direct	high	950	0.999	GCA_000339475.1_01326