core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	genomad_gene	genomad_length	genomad_strand	genomad_gc_content	genomad_genetic_code	genomad_rbs_motif	genomad_marker	genomad_evalue	genomad_bitscore	genomad_uscg	genomad_plasmid_hallmark	genomad_virus_hallmark	genomad_taxid	genomad_taxname	genomad_annotation_conjscan	genomad_annotation_amr	genomad_annotation_accessions	genomad_annotation_description	genomad_element_name_std	genomad_element_name_orig	genomad_element_gene_wrt_to_contig	genomad_element_gene_wrt_to_element	genomad_element_gene_start	genomad_element_gene_end	genomad_protein_translation	genomad_phage_region_id	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_000348705.1|CM001835.1@region_784756_792660@tool_genomad	genomad	CDS	784756	785250	GCA_000348705.1	CM001835.1	GCA_000348705.1|CM001835.1	GCA_000348705.1_CM001835.1	GCA_000348705.1|CM001835.1|provirus_784756_792660_822	495	-1	0.315	11	AGGA	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_000348705.1|CM001835.1@region_784756_792660@tool_genomad	GCA_000348705.1|CM001835.1	822	1	1	495	MNRIKQLRKENNLTQRELANETKIPYRTIQRWENGETDIKSDAAQVLADYFGVSIPHLLGYSDLIADTDSDIKAMAYSHLLTFVDEKQIKEFEKEFIRANDNSDTFGDLGSGEKALEKYYQALCYLVPPFRDILARYSFLSLDEKKSVYNIIVGLSNNLSKENK	GCA_000348705.1|CM001835.1|provirus_784756_792660	GCA_000348705.1|CM001835.1@region_784756_792660@tool_genomad_CDS_0001	cloud	direct	high	495	1.0	GCA_000348705.1_00841
GCA_000348705.1|CM001835.1@region_784756_792660@tool_genomad	genomad	CDS	785321	785503	GCA_000348705.1	CM001835.1	GCA_000348705.1|CM001835.1	GCA_000348705.1_CM001835.1	GCA_000348705.1|CM001835.1|provirus_784756_792660_823	183	1	0.377	11	GGAGG	GENOMAD.081367.VV	3.71e-19	81	0	0	1	1246	Caudoviricetes	NA	NA	PF06892;TIGR00721;COG3620;K22299	DNA-binding protein, Tfx family	GCA_000348705.1|CM001835.1@region_784756_792660@tool_genomad	GCA_000348705.1|CM001835.1	823	2	566	748	MLITLSLAEKVRIKRARLQLTKKAVSEQLGIKSQTLTKVENGNYDASKRIYESVMTWLVE	GCA_000348705.1|CM001835.1|provirus_784756_792660	GCA_000348705.1|CM001835.1@region_784756_792660@tool_genomad_CDS_0002	cloud	direct	high	183	1.0	GCA_000348705.1_00842
GCA_000348705.1|CM001835.1@region_784756_792660@tool_genomad	genomad	CDS	785714	785980	GCA_000348705.1	CM001835.1	GCA_000348705.1|CM001835.1	GCA_000348705.1_CM001835.1	GCA_000348705.1|CM001835.1|provirus_784756_792660_824	267	1	0.345	11	GGAGG	GENOMAD.167683.VP	4.922e-14	68	0	0	0	1246	Caudoviricetes	NA	NA	PF09035;COG3311;TIGR01764	Predicted DNA-binding transcriptional regulator AlpA	GCA_000348705.1|CM001835.1@region_784756_792660@tool_genomad	GCA_000348705.1|CM001835.1	824	3	959	1225	MEILSKEIQLQGLQLLKQTLETLVELEKQRSSKLDLISRKELMDLLGISATTLDNWEDLALKRYQTPMDGAKKVFYRLSDVYLFLAIK	GCA_000348705.1|CM001835.1|provirus_784756_792660	GCA_000348705.1|CM001835.1@region_784756_792660@tool_genomad_CDS_0003	shell	direct	high	267	1.0	GCA_000348705.1_00843
GCA_000348705.1|CM001835.1@region_784756_792660@tool_genomad	genomad	CDS	785991	786143	GCA_000348705.1	CM001835.1	GCA_000348705.1|CM001835.1	GCA_000348705.1_CM001835.1	GCA_000348705.1|CM001835.1|provirus_784756_792660_825	153	1	0.320	11	AGGAG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_000348705.1|CM001835.1@region_784756_792660@tool_genomad	GCA_000348705.1|CM001835.1	825	4	1236	1388	MKIVTFKPTKQIDGGFYLPGIDILFVSDKADAKSTEDVILFISRNGLNKS	GCA_000348705.1|CM001835.1|provirus_784756_792660	GCA_000348705.1|CM001835.1@region_784756_792660@tool_genomad_CDS_0004	shell	direct	high	153	1.0	GCA_000348705.1_00844
GCA_000348705.1|CM001835.1@region_784756_792660@tool_genomad	genomad	CDS	786313	786609	GCA_000348705.1	CM001835.1	GCA_000348705.1|CM001835.1	GCA_000348705.1_CM001835.1	GCA_000348705.1|CM001835.1|provirus_784756_792660_826	297	1	0.387	11	AGGAGG	GENOMAD.205814.VP	4.569e-50	172	0	0	0	1246	Caudoviricetes	NA	NA	COG3646;TIGR02681	Phage regulatory protein Rha	GCA_000348705.1|CM001835.1@region_784756_792660@tool_genomad	GCA_000348705.1|CM001835.1	826	5	1558	1854	MELVYMDGKKEPYTTSEIIAECADVQHHTITRLIRENKVDFEELGILGFKIHKLDTRGQPKKSYILNEQQATLLITYLKNTEAVRQFKLNLVKAFFKR	GCA_000348705.1|CM001835.1|provirus_784756_792660	GCA_000348705.1|CM001835.1@region_784756_792660@tool_genomad_CDS_0005	shell	direct	high	297	1.0	GCA_000348705.1_00845
GCA_000348705.1|CM001835.1@region_784756_792660@tool_genomad	genomad	CDS	786780	786980	GCA_000348705.1	CM001835.1	GCA_000348705.1|CM001835.1	GCA_000348705.1_CM001835.1	GCA_000348705.1|CM001835.1|provirus_784756_792660_827	201	1	0.363	11	AGGAG	GENOMAD.072874.VV	2.077e-27	105	0	0	0	1246	Caudoviricetes	NA	NA	NA	NA	GCA_000348705.1|CM001835.1@region_784756_792660@tool_genomad	GCA_000348705.1|CM001835.1	827	6	2025	2225	MTLDLDNMTQAEFDEAMAEIQLQSPNIFQLISDFVNKKVTSVEIDDLLNMKRAEQVAYIKNYKARA	GCA_000348705.1|CM001835.1|provirus_784756_792660	GCA_000348705.1|CM001835.1@region_784756_792660@tool_genomad_CDS_0006	cloud	direct	high	201	1.0	GCA_000348705.1_00846
GCA_000348705.1|CM001835.1@region_784756_792660@tool_genomad	genomad	CDS	786982	787197	GCA_000348705.1	CM001835.1	GCA_000348705.1|CM001835.1	GCA_000348705.1_CM001835.1	GCA_000348705.1|CM001835.1|provirus_784756_792660_828	216	1	0.426	11	GGAG/GAGG	GENOMAD.068563.VV	4.135e-38	136	0	0	0	1246	Caudoviricetes	NA	NA	NA	NA	GCA_000348705.1|CM001835.1@region_784756_792660@tool_genomad	GCA_000348705.1|CM001835.1	828	7	2227	2442	MNELDISNTQAVFVTVILIGLLLYLNHRDRKKSAQLERENQQTIETPSEDLNPDYGRYIQLAGVDVWGRIE	GCA_000348705.1|CM001835.1|provirus_784756_792660	GCA_000348705.1|CM001835.1@region_784756_792660@tool_genomad_CDS_0007	shell	direct	high	216	1.0	GCA_000348705.1_00847
GCA_000348705.1|CM001835.1@region_784756_792660@tool_genomad	genomad	CDS	787272	788081	GCA_000348705.1	CM001835.1	GCA_000348705.1|CM001835.1	GCA_000348705.1_CM001835.1	GCA_000348705.1|CM001835.1|provirus_784756_792660_829	810	1	0.365	11	GGAG/GAGG	GENOMAD.189730.VP	4.398e-14	75	0	0	1	1246	Caudoviricetes	NA	NA	PF14297;TIGR01714;K02315	phage replisome organizer, putative, N-terminal region	GCA_000348705.1|CM001835.1@region_784756_792660@tool_genomad	GCA_000348705.1|CM001835.1	829	8	2517	3326	MAKTKVYFWLKIDKKFFDNIFIKRLKTVPGGYTMTVIYIRLMLESLESDCILYYEGYFNNLKEELALKLDVSEDDIDMTMAYFTKCGLIQIDEDKNAELPQAKAMVMSETNWASYKREQRKKGKLEEVQPSLTFSNSCPTEIEKELEIEVDKEQSPTPSTINQDFVNLYKSFEAETGKALSPLQIQELQYMLEDFSPELIHEALKEAVSQGKANFAYIKAILNRWKQDNLLTVELVRNSRAAREAKKQQTNQLEPTSYEDWIPTQEKPF	GCA_000348705.1|CM001835.1|provirus_784756_792660	GCA_000348705.1|CM001835.1@region_784756_792660@tool_genomad_CDS_0008	cloud	direct	high	810	1.0	GCA_000348705.1_00848
GCA_000348705.1|CM001835.1@region_784756_792660@tool_genomad	genomad	CDS	788093	788989	GCA_000348705.1	CM001835.1	GCA_000348705.1|CM001835.1	GCA_000348705.1_CM001835.1	GCA_000348705.1|CM001835.1|provirus_784756_792660_830	897	1	0.342	11	AGGAG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_000348705.1|CM001835.1@region_784756_792660@tool_genomad	GCA_000348705.1|CM001835.1	830	9	3338	4234	MKSLQSSLGNIETFKLDELCPKHEIQLTQIKGERHVVVGWNENGEVIKEVRCIPPYCEQCQEEQKKQDEEDAIADNLNAKLYLQTYNVLMSNKSYVADEFKTKTFDDFNAVTSEEKRFLEFAKGQVQKYLDGMRGNTLITGGTGIGKTLLSVAIAKGINEGYKTKGEPKSVLFVSLTEMIKQIKEGWNYGKGATLTEFEATELMKSVDYLIIDDLGAKNAVIKPKSDWEQDLLFDVLNNRENTIFNTNLDSDELKIVYNERNYSRILKGLEGNTFKAFTIKDKRYSINQLKNKVKQLK	GCA_000348705.1|CM001835.1|provirus_784756_792660	GCA_000348705.1|CM001835.1@region_784756_792660@tool_genomad_CDS_0009	shell	direct	high	897	1.0	GCA_000348705.1_00849
GCA_000348705.1|CM001835.1@region_784756_792660@tool_genomad	genomad	CDS	789588	789761	GCA_000348705.1	CM001835.1	GCA_000348705.1|CM001835.1	GCA_000348705.1_CM001835.1	GCA_000348705.1|CM001835.1|provirus_784756_792660_831	174	1	0.310	11	AGGAG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_000348705.1|CM001835.1@region_784756_792660@tool_genomad	GCA_000348705.1|CM001835.1	831	10	4833	5006	MTENKDNKLLEMMEKGFVLYSKNGIIKYIEIPDHGSIKLKAQDGQLVYKEVTTGEQC	GCA_000348705.1|CM001835.1|provirus_784756_792660	GCA_000348705.1|CM001835.1@region_784756_792660@tool_genomad_CDS_0010	cloud	direct	high	174	1.0	GCA_000348705.1_00850
GCA_000348705.1|CM001835.1@region_784756_792660@tool_genomad	genomad	CDS	789851	790456	GCA_000348705.1	CM001835.1	GCA_000348705.1|CM001835.1	GCA_000348705.1_CM001835.1	GCA_000348705.1|CM001835.1|provirus_784756_792660_832	606	1	0.365	11	AGGAG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_000348705.1|CM001835.1@region_784756_792660@tool_genomad	GCA_000348705.1|CM001835.1	832	11	5096	5701	MTFTTIKDDIKAFGKKKHGYMTGYIAKQEELHKQLQNGMIGEKYAKDQLEAYKLEGDTYSRDTYNKIHAEIEKQHDLELEALKEKELSVTADDVAELTLLASMKMTKDELLGYFEKYKNKPLAIKKLWSIAEQYPEIAINLELFNAEQALESLILFFKRQLSYCHYSLLINGDKIQAVTTEMVVNSDAPELDRRLDEYLNK	GCA_000348705.1|CM001835.1|provirus_784756_792660	GCA_000348705.1|CM001835.1@region_784756_792660@tool_genomad_CDS_0011	cloud	direct	high	606	1.0	GCA_000348705.1_00851
GCA_000348705.1|CM001835.1@region_784756_792660@tool_genomad	genomad	CDS	790500	790652	GCA_000348705.1	CM001835.1	GCA_000348705.1|CM001835.1	GCA_000348705.1_CM001835.1	GCA_000348705.1|CM001835.1|provirus_784756_792660_833	153	1	0.405	11	AGGAG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_000348705.1|CM001835.1@region_784756_792660@tool_genomad	GCA_000348705.1|CM001835.1	833	12	5745	5897	MAGNENDGLTSKQIKFIDAMLTEPTIDKACQKAGVSRATGHKYLKVAAVD	GCA_000348705.1|CM001835.1|provirus_784756_792660	GCA_000348705.1|CM001835.1@region_784756_792660@tool_genomad_CDS_0012	shell	direct	high	153	1.0	GCA_000348705.1_00852
GCA_000348705.1|CM001835.1@region_784756_792660@tool_genomad	genomad	CDS	790664	790915	GCA_000348705.1	CM001835.1	GCA_000348705.1|CM001835.1	GCA_000348705.1_CM001835.1	GCA_000348705.1|CM001835.1|provirus_784756_792660_834	252	1	0.313	11	None	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_000348705.1|CM001835.1@region_784756_792660@tool_genomad	GCA_000348705.1|CM001835.1	834	13	5909	6160	MMDKTTQMLYLASSNAVSVLNDIMMDAKINPFIRTQAAKTILEQSYKTHEIFGVVRQIEELRLEIEEVSKGDQRVTRTQGIIK	GCA_000348705.1|CM001835.1|provirus_784756_792660	GCA_000348705.1|CM001835.1@region_784756_792660@tool_genomad_CDS_0013	shell	direct	high	252	1.0	GCA_000348705.1_00853
GCA_000348705.1|CM001835.1@region_784756_792660@tool_genomad	genomad	CDS	790857	791234	GCA_000348705.1	CM001835.1	GCA_000348705.1|CM001835.1	GCA_000348705.1_CM001835.1	GCA_000348705.1|CM001835.1|provirus_784756_792660_835	378	1	0.347	11	GGAG/GAGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_000348705.1|CM001835.1@region_784756_792660@tool_genomad	GCA_000348705.1|CM001835.1	835	14	6102	6479	MRKYLKEIKELQELKELLSSRNTPEVIIVEGNDDLGEFFQVDGELFSDIELLENLKKWREWEVQVIVDDWCNRGLNEYETGILYFPKHEDKMDYIRFNKGLEPLYHALDEPYTTISKSEWLKLLD	GCA_000348705.1|CM001835.1|provirus_784756_792660	GCA_000348705.1|CM001835.1@region_784756_792660@tool_genomad_CDS_0014	shell	direct	high	378	1.0	GCA_000348705.1_00854
GCA_000348705.1|CM001835.1@region_784756_792660@tool_genomad	genomad	CDS	791252	791662	GCA_000348705.1	CM001835.1	GCA_000348705.1|CM001835.1	GCA_000348705.1_CM001835.1	GCA_000348705.1|CM001835.1|provirus_784756_792660_836	411	1	0.331	11	AGGAG	GENOMAD.066502.VV	2.126e-68	227	0	0	0	1246	Caudoviricetes	NA	NA	NA	NA	GCA_000348705.1|CM001835.1@region_784756_792660@tool_genomad	GCA_000348705.1|CM001835.1	836	15	6497	6907	MPKKKIERISVIHREKILWLKWYFMRDKEKPKYSVLECKMFDAAKNKDMLAYKKYATIKQITDIRVQTSEDDILTAIKEVYVYNHMNVIGACQRILFVSQSPAYNKLNKWFETYSDLYFSIIPLPNMGAYHELVDS	GCA_000348705.1|CM001835.1|provirus_784756_792660	GCA_000348705.1|CM001835.1@region_784756_792660@tool_genomad_CDS_0015	shell	direct	high	411	1.0	GCA_000348705.1_00855
GCA_000348705.1|CM001835.1@region_784756_792660@tool_genomad	genomad	CDS	792154	792660	GCA_000348705.1	CM001835.1	GCA_000348705.1|CM001835.1	GCA_000348705.1_CM001835.1	GCA_000348705.1|CM001835.1|provirus_784756_792660_837	507	-1	0.375	11	None	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_000348705.1|CM001835.1@region_784756_792660@tool_genomad	GCA_000348705.1|CM001835.1	837	16	7399	7905	MNSLGINFYLFLPTHLSTILLRKHGLISKSTSKRYYQVAIPFTRLFCLVLVSIDYINCLSETADKNWHKSDRIFVTNTGKTVHSSILSKSLQRANERLKKPIPKHLSPHIFIHITISILSENKIPLKTITDRVGHPDSEVTNSIYTHVTKNMKDEAINVLDKVMKKIF	GCA_000348705.1|CM001835.1|provirus_784756_792660	GCA_000348705.1|CM001835.1@region_784756_792660@tool_genomad_CDS_0016	persistent	ambiguous	low	8	0.016	GCA_000348705.1_00857