core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_000455965.1|ATKB01000176.1@region_1_9484@tool_cenote	cenote	CDS	1	1859	GCA_000455965.1	ATKB01000176.1	GCA_000455965.1|ATKB01000176.1	GCA_000455965.1_ATKB01000176.1	GCA_000455965.1|ATKB01000176.1	GCA_000455965_1_145	GCA_000455965_1_145	1	1860	GCA_000455965_1_145_1	GCA_000455965_1_145_1	-	9484	.	TIGR03423	penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]	MKLNRYKNNDVILGDKRNSREIVFKIIVFLCFLILFLRLLYLQVLQGNEFSYLAERNQYKLVKIDSPRGKIFDSKNRLVVTNGTGYRLIYSLGREENEEYIKEIAKLTDKTEEVVRKRIKYGEIFPYTKDNVLFEDLDEEKAHRIIEIVNNYPYLEVQVYSKRKYLYDTVASHTIGYVKKISEKEYEALKEESYTPRDMIGKLGIEKTYDDILRGRNGFKYIEVNALNKIEREVEKVKSPIVGKNLYMGINMELQQYMEEEFEKDGRSGSFVALNPKTGEIITIVSYPTYSLNTFSSQISPEEWNLISNDPRKILTNKTIAGEYPPGSTFKMLSAIAFLKSGIDPKLKYNDYTGYYQIGNWKWRAWKRGGHGATDMKKSLVESANTYYYKFSDQIGYAPIVKTARDFGLGDVSGIDIPGEKKGIIPDPDWKKKRTKTVWYRGDTILLSIGQGFTLVTPIQLAKAYTFLANKGWAYEPHIVSKIEDLQTGKIEIVSTKKTVLEGYPESYYDIINDALIATVDQNNGTTRIMRNPYVKVAAKSGSAQNPHSKLTHAWVAGYFPADKEPEVVFVCLLEGAGGGGVMAGGMAKKFLDKYLEVEKGIVPVQNTPYTEPKTTNSTI	mmseqs_cdd	nonviral_gene	NaN	.	0	9484	GCA_000455965.1|ATKB01000176.1@region_1_9484@tool_cenote_CDS_0001	persistent	ambiguous	low	10	0.005	GCA_000455965.1_01794
GCA_000455965.1|ATKB01000176.1@region_1_9484@tool_cenote	cenote	CDS	1849	2271	GCA_000455965.1	ATKB01000176.1	GCA_000455965.1|ATKB01000176.1	GCA_000455965.1_ATKB01000176.1	GCA_000455965.1|ATKB01000176.1	GCA_000455965_1_145	GCA_000455965_1_145	1850	2272	GCA_000455965_1_145_2	GCA_000455965_1_145_2	-	9484	.	.	hypothetical protein	MIVIIVSLILIFIGNSLPLNGVLVGITLPFITFIIGKRRSLFFIFLAWLLFSLQTDKYSFNLLVMSLFGFLNFLLFCYVEYDRKSIFYLIPLDIVFYLLIVYKNLFNGIDIKYLIINIISFFILNYFYTSRKNKRKIDEA*	.	hypothetical_protein	NaN	.	0	9484	GCA_000455965.1|ATKB01000176.1@region_1_9484@tool_cenote_CDS_0002	persistent	direct	high	422	0.998	GCA_000455965.1_01794
GCA_000455965.1|ATKB01000176.1@region_1_9484@tool_cenote	cenote	CDS	2282	3265	GCA_000455965.1	ATKB01000176.1	GCA_000455965.1|ATKB01000176.1	GCA_000455965.1_ATKB01000176.1	GCA_000455965.1|ATKB01000176.1	GCA_000455965_1_145	GCA_000455965_1_145	2283	3266	GCA_000455965_1_145_3	GCA_000455965_1_145_3	-	9484	.	.	hypothetical protein	MATKKKKKKKGRAPVLVIVLTIILSILLYFNFRGNNIKLSKDERVLIIGKQNLYAVYEDKLAVKIPFELYIDSDETVEDLVDSQNYENVLEKINAIVPEKLTRYTVIKSGEIKLDVENARNIPETNIGDRRYILTSSVYAMFKDLYHEKNTVDELNENILVDVLNANGIGGYARKTGELIKSSLGMKYNAANYETTQDQSYVILNDISKEKAAEILDKLPEKYFKIKNKSSIPTLANIVIIIGSEKQINFKIDIYASQEKIKEASEKIKAIGYSNISSLPEKEDTEQSIIEYNKEDYFTALKIAKALGITDMVENSDLENKIGITIK*	.	hypothetical_protein	NaN	.	0	9484	GCA_000455965.1|ATKB01000176.1@region_1_9484@tool_cenote_CDS_0003	persistent	direct	high	983	0.999	GCA_000455965.1_01795
GCA_000455965.1|ATKB01000176.1@region_1_9484@tool_cenote	cenote	CDS	3269	4576	GCA_000455965.1	ATKB01000176.1	GCA_000455965.1|ATKB01000176.1	GCA_000455965.1_ATKB01000176.1	GCA_000455965.1|ATKB01000176.1	GCA_000455965_1_145	GCA_000455965_1_145	3270	4577	GCA_000455965_1_145_4	GCA_000455965_1_145_4	-	9484	.	TIGR01579	MiaB-like tRNA modifying enzyme. This clade of sequences is closely related to MiaB, a modifier of isopentenylated adenosine-37 of certain eukaryotic and bacterial tRNAs (see TIGR01574). Sequence alignments suggest that this equivalog performs the same chemical transformation as MiaB, perhaps on a different (or differently modified) tRNA base substrate. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium. [Protein synthesis, tRNA and rRNA base modification]	MSFSKKVAFHTLGCKVNQYETESIKNQLIKRGYEEVPFEDKSDIYIINSCTVTSIADRKTRNMLRRAKKINPDAKVIVTGCYAQTNSREILEIEDVDFVIDNKNKSNIVNFVGAIEDISFEREKNGNIFQEKEYQEYEFATLREMTRAYVKIQDGCNHFCSYCKIPFARGKSRSRKKENILKEIEKLVEDGFKEVILIGIDLSAYGKDFKEKDNFESLLEEILKIKDLKRVRIGSVYPDKITDRFIELFKNKNLMPHLHISLQSCDDTVLKNMRRNYGSSLIRESLLKLKSKVENMEFTADVIVGFPKEDEIMFQNTHDVIKEIEFSGLHIFQYSDREGTIASNMDGKVDAKTKKQRADRLDSLKQEMILNSRKKYLEKNLEVLVEEEKDGEYFGYSQNYLRVKFRSDEKNLVNKLINVKIKCVKNDILIAEKEM*	mmseqs_cdd	nonviral_gene	NaN	.	0	9484	GCA_000455965.1|ATKB01000176.1@region_1_9484@tool_cenote_CDS_0004	persistent	direct	high	1307	0.999	GCA_000455965.1_01796
GCA_000455965.1|ATKB01000176.1@region_1_9484@tool_cenote	cenote	CDS	4563	5270	GCA_000455965.1	ATKB01000176.1	GCA_000455965.1|ATKB01000176.1	GCA_000455965.1_ATKB01000176.1	GCA_000455965.1|ATKB01000176.1	GCA_000455965_1_145	GCA_000455965_1_145	4564	5271	GCA_000455965_1_145_5	GCA_000455965_1_145_5	-	9484	.	COG1385	16S rRNA U1498 N3-methylase RsmE [Translation, ribosomal structure and biogenesis]. 	MLSVVVTEVYDDYILVVDIGDINHIKNVFRKVKGDKIRAVDGANEYLCEIEKIDEKEIKLKILEKIKDSFSLDIEINAGISILKGDKMDLTIQKLTELGINKIIPISVKRCIVKLDKKKDRWDIISKEALKQCQGVVPTAIDEIKKIDKLDLKDYDLILVPYENEKEIFIKDILRNLKVKPTKILYIIGAEGGFEKEEIDYLKENGAKIISLGKRILRAETAAIVTGGVIINEFF*	mmseqs_cdd	nonviral_gene	NaN	.	0	9484	GCA_000455965.1|ATKB01000176.1@region_1_9484@tool_cenote_CDS_0005	persistent	direct	high	707	0.999	GCA_000455965.1_01797
GCA_000455965.1|ATKB01000176.1@region_1_9484@tool_cenote	cenote	CDS	5282	5707	GCA_000455965.1	ATKB01000176.1	GCA_000455965.1|ATKB01000176.1	GCA_000455965.1_ATKB01000176.1	GCA_000455965.1|ATKB01000176.1	GCA_000455965_1_145	GCA_000455965_1_145	5283	5708	GCA_000455965_1_145_6	GCA_000455965_1_145_6	-	9484	.	pfam02082	Transcriptional regulator. This family is related to pfam001022 and other transcription regulation families (personal obs: Yeats C).	MKINTKVRYGLKALAYIAENSTDKKLVRIKEISEDQDISVQYLEQILFKLKNENIIEGKRGPTGGYKLAIEPKEIDLYMIYRILDDEEKVIDCNEMGEGKTHSCNEAGCGDTCIWSKLDNAMTKILSETSLQDFINNGKRI*	mmseqs_cdd	nonviral_gene	NaN	.	0	9484	GCA_000455965.1|ATKB01000176.1@region_1_9484@tool_cenote_CDS_0006	persistent	direct	high	425	0.998	GCA_000455965.1_01798
GCA_000455965.1|ATKB01000176.1@region_1_9484@tool_cenote	cenote	CDS	5685	6701	GCA_000455965.1	ATKB01000176.1	GCA_000455965.1|ATKB01000176.1	GCA_000455965.1_ATKB01000176.1	GCA_000455965.1|ATKB01000176.1	GCA_000455965_1_145	GCA_000455965_1_145	5686	6702	GCA_000455965_1_145_7	GCA_000455965_1_145_7	-	9484	.	PDB:1SXJ_D	Activator-Clamp-Loader	MERIISELEMPNEVEIQKSLRPKSFDEYIGQENLKEKMSISIKAAQKRNMVVDHILLYGPPGLGKTTLAGVIANEMKANLKITSGPILEKAGDLAAILTSLEENDILFIDEIHRLNSTVEEILYPAMEDGELDIIIGKGPSAKSIRIELPPFTLIGATTRAGLLSAPLRDRFGVSHKMEYYNENEIKSIIIRGAKILGVKINEDGAIEISKRSRGTPRIANRLLKRVRDYCEIKGNGTIDKLSAKNALDMLGVDSNGLDDLDRNIINSIIENYDGGPVGIETLSLLLGEDRRTLEEVYEPYLVKIGFLKRTNRGRIVTSKAYQHFMKVEVKDENKHKS*	common_virus_hmm	common_virus	NaN	.	0	9484	GCA_000455965.1|ATKB01000176.1@region_1_9484@tool_cenote_CDS_0007	persistent	direct	high	1016	0.999	GCA_000455965.1_01799
GCA_000455965.1|ATKB01000176.1@region_1_9484@tool_cenote	cenote	CDS	6984	7586	GCA_000455965.1	ATKB01000176.1	GCA_000455965.1|ATKB01000176.1	GCA_000455965.1_ATKB01000176.1	GCA_000455965.1|ATKB01000176.1	GCA_000455965_1_145	GCA_000455965_1_145	6985	7587	GCA_000455965_1_145_8	GCA_000455965_1_145_8	-	9484	.	UniProt:tr|A0A0N7IR80_9CAUD	Tail-tape-measure-	MKQFLVMILISGAIGWITNWVAIKMLFRPHKEINFGLFKIQGLIPKRRAEIGSGIANIIQNELISVKDVISNIDREEFSKRLNALIDEVLDKNLKKKVKEKFPFLQMFFTDKIAKDVGNTIKDIIMGNQEKIFEIFSNYAEENIDFEVIISDKISNFSLDKLEEIITFLAKKELKHIEVIGAILGMLIGAVQYLITLIIK*	hallmark_hmm	common_virus	NaN	.	0	9484	GCA_000455965.1|ATKB01000176.1@region_1_9484@tool_cenote_CDS_0008	persistent	direct	high	602	0.998	GCA_000455965.1_01800
GCA_000455965.1|ATKB01000176.1@region_1_9484@tool_cenote	cenote	CDS	7787	8242	GCA_000455965.1	ATKB01000176.1	GCA_000455965.1|ATKB01000176.1	GCA_000455965.1_ATKB01000176.1	GCA_000455965.1|ATKB01000176.1	GCA_000455965_1_145	GCA_000455965_1_145	7788	8243	GCA_000455965_1_145_9	GCA_000455965_1_145_9	+	9484	.	.	hypothetical protein	MSVLYIKILSDYYHHIVGDLEKSRKNFLEKFYSYLLEKDEYGYAPIFEGELERIEYLLKQISLETKGMSLDEFLKLMSWYDEDAWANGEIFEYFLHHKKEKEIKLITDIHSLNEKELQFIKDLDNFLNNKGKVLKFFNVHNGKYQSLKEIL*	.	hypothetical_protein	NaN	.	0	9484	GCA_000455965.1|ATKB01000176.1@region_1_9484@tool_cenote_CDS_0009	persistent	direct	high	455	0.998	GCA_000455965.1_01801
GCA_000455965.1|ATKB01000176.1@region_1_9484@tool_cenote	cenote	CDS	8426	9346	GCA_000455965.1	ATKB01000176.1	GCA_000455965.1|ATKB01000176.1	GCA_000455965.1_ATKB01000176.1	GCA_000455965.1|ATKB01000176.1	GCA_000455965_1_145	GCA_000455965_1_145	8427	9347	GCA_000455965_1_145_10	GCA_000455965_1_145_10	+	9484	.	COG0031	Cysteine synthase [Amino acid transport and metabolism]. 	MLANSVIELIGNTPLVKINNIDTFGNEIYVKLEGSNPGRSTKDRIALKMIEEAEKEGLIDKDTVIMEATSGNTGIGLAMICAVKNYKLKIVMPDTMSVERIQLMRAYGTEVILTDGSLGMKACLEKLEELKKKEKKYFIPDQFTNVNNPKAHYETTAEEILKDMNNKVDVFICGTGTGGSFSGTAKKLKEKLPNIKTFPVEPASSPLLSKGYIGPHKIQGMGMSIGGIPAVYDGSLADGILTCEDDDAFKMMRELSFKEGILAGISTGATLKAALDYSKKNANKGLRIVILSTDSGEKYLSNICDL*	mmseqs_cdd	nonviral_gene	NaN	.	0	9484	GCA_000455965.1|ATKB01000176.1@region_1_9484@tool_cenote_CDS_0010	persistent	direct	high	920	0.999	GCA_000455965.1_01802