core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_000467975.1|KI260149.1@region_1_4698@tool_cenote	cenote	CDS	31	1074	GCA_000467975.1	KI260149.1	GCA_000467975.1|KI260149.1	GCA_000467975.1_KI260149.1	GCA_000467975.1|KI260149.1	GCA_000467975_1_148	GCA_000467975_1_148	32	1075	GCA_000467975_1_148_1	GCA_000467975_1_148_1	-	4698	.	TIGR03782	Bacteroides conjugative transposon TraJ protein. Members of this protein family are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage. This family is related conjugation system proteins in the Proteobacteria, including TrbL of Agrobacterium Ti plasmids and VirB6. [Cellular processes, DNA transformation]	MDFSSLHELLRSTYQEMMPLASEMTGIAKGIAGLGALFYIAIRVWSSLARAESIDVYPLLRPFVLGFCIMFFPTVVLGTMNAVLSPVVKGTEQMVQKQEGTLDKLTAERNKLQEEAYLRNPETAYLVSNEKFDQKIEEMGIIGPEDAVTIAGMYAERAAYQTKRWFMKKVQDLLELIFHAAGLVIDTLRTFILIVLSILGPVVFGIAVWDGLSGSLTAWFSRYISVYLWLPVSSILTALLTKIQILMIQKDIALLSDPNYIPEVGSWYYMVFFLIGIIGYFSVPTVSGWIIEAGGGIGSYGRNVNQTAQRGAQGAYLGGKAAAAGTGASIGNIGGRIKGALLRRKGN*	mmseqs_cdd	nonviral_gene	NaN	.	0	4698	GCA_000467975.1|KI260149.1@region_1_4698@tool_cenote_CDS_0001	shell	direct	high	1043	0.999	GCA_000467975.1_01837
GCA_000467975.1|KI260149.1@region_1_4698@tool_cenote	cenote	CDS	1078	1707	GCA_000467975.1	KI260149.1	GCA_000467975.1|KI260149.1	GCA_000467975.1_KI260149.1	GCA_000467975.1|KI260149.1	GCA_000467975_1_148	GCA_000467975_1_148	1079	1708	GCA_000467975_1_148_2	GCA_000467975_1_148_2	-	4698	.	PFAM:PF05396.11	Major-Capsid-Protein	MKKYILMALLGLSLFTTQAHAQWVVSDPMNFAGNIANTVKEIATASKTVKNTLNGFKEVEKLYNDTKKYYDALKKVNNLIGDAYKVKETILMVGDISEIYVSSYKKMLSDTNFRSTELAAMASGYSKLLELSGESLKELKSVAKSNVFSMNDSERMQMIDRIYNTVREYRSLVSYYTRKNISVSYVRARQKGELEQVRSLYGSSDIRYW*	hallmark_hmm	common_virus	NaN	.	0	4698	GCA_000467975.1|KI260149.1@region_1_4698@tool_cenote_CDS_0002	shell	direct	high	629	0.998	GCA_000467975.1_01838
GCA_000467975.1|KI260149.1@region_1_4698@tool_cenote	cenote	CDS	1711	4233	GCA_000467975.1	KI260149.1	GCA_000467975.1|KI260149.1	GCA_000467975.1_KI260149.1	GCA_000467975.1|KI260149.1	GCA_000467975_1_148	GCA_000467975_1_148	1712	4234	GCA_000467975_1_148_3	GCA_000467975_1_148_3	-	4698	.	TIGR03783	Bacteroides conjugation system ATPase, TraG family. Members of this family include the predicted ATPase, TraG, encoded by transfer region genes of conjugative transposons of Bacteroides, such as CTnDOT, found on the main chromosome. Members also include TraG homologs borne on plasmids in Bacteroides. The protein family is related to the conjugative transfer system ATPase VirB4. [Cellular processes, DNA transformation]	MRNSSKMSTLEAKFPLLAIEQGCIVSKEADITVAFRVELPELFTVTSTEYETMHSAWHKAIKVLPNFSIVHKQDWFIAEEYQGKLSEGGLSFLARSSERHFNERPYLHHSVYLFLTKSNKKRMAQQSNFSTLCRGYLVPKEIEDKEAVIKFMEAVDQFERIINDTMLIRLERMTEEELVGTKEKSGLLDRYFSLSDEHHASLEDIRLGADLVRVGDNRLCLHTLSDTDDLPTTVSTDSRYERLSTDRSDCRLSFASPVGLMLPCNHIYNQYLFIEDSDANLQRFEKQARNMHSLARYSRSNQINEEWLQEYLNVAHSQGLTSIRAHFNVLAWSSDSEELRQIKNDVGSALALMECKPRHNTIDVATLYWAGIPGNAADFPSEESFYTFIEPALCFFTAETNYKDSLSPFGIKMADRLSGKPIHLDISDLPMKKGIITNRNKFILGPSGSGKSFFTNHMVRQYYEQGAHVLLVDTGNSYQGLCELIHGKTKGEDGVYFTYTDENPISFNPFYTDDYLFDVEKRESICTLLLTLWKSAEEQITKTEAGELGSAVNAYIELIRSDRSITPCFNTFYEYLRDVYREDIGKREIEVTLSDFNINNLLTTLKQYYRGGRYDFLLNSDKNIDLLSKRFIVFEIDAVKDNKDLFPVVTIIMEAFINKMRRLKGIRKMILIEEAWKAIASANMADYIKYLYKTVRKFFGEAIVVTQEVDDIIQSPIVKESIINNSDCKILLDQRKYMTKFDGIQAMLGLSEKEKSQILSINQNNDPNRLYKEVWIGLGGMQSAVYATEVSFEEYLTYTTEETEKLEVMRLSEELGGDIETAIRRLAMEKRQKYKTLKQQ*	mmseqs_cdd	nonviral_gene	NaN	.	0	4698	GCA_000467975.1|KI260149.1@region_1_4698@tool_cenote_CDS_0003	shell	direct	high	2522	1.0	GCA_000467975.1_01839
GCA_000467975.1|KI260149.1@region_1_4698@tool_cenote	cenote	CDS	4230	4562	GCA_000467975.1	KI260149.1	GCA_000467975.1|KI260149.1	GCA_000467975.1_KI260149.1	GCA_000467975.1|KI260149.1	GCA_000467975_1_148	GCA_000467975_1_148	4231	4563	GCA_000467975_1_148_4	GCA_000467975_1_148_4	-	4698	.	PF13571.6	Domain of unknown function (DUF4133)	MGSWEINKGVGRTVEFKGLKAQYLFLFAGGLLGTFIVVVVLYLLGMRQLVCLGIGALGATLVVWQTFAMNRKYGEHGLMKLGAVRSHPRYLLNRRSVYHLFHNLKSEATR*	hhsuite_tools	nonviral_gene	NaN	.	0	4698	GCA_000467975.1|KI260149.1@region_1_4698@tool_cenote_CDS_0004	cloud	direct	high	332	0.997	GCA_000467975.1_01840
GCA_000467975.1|KI260078.1@region_1_3720@tool_cenote	cenote	CDS	2	934	GCA_000467975.1	KI260078.1	GCA_000467975.1|KI260078.1	GCA_000467975.1_KI260078.1	GCA_000467975.1|KI260078.1	GCA_000467975_1_85	GCA_000467975_1_85	3	935	GCA_000467975_1_85_1	GCA_000467975_1_85_1	-	3720	.	PDB:1IFL_A	Filamentous-Major-Coat-protein	MSPTIYYILCVLLSLMVLGGISMMSRVKTAVMGNTLSAVAMLGGIILTLVYNEILPAWSVYIFLIIGAGIGWTMAQRVKMIQMPQMVALLNGVGGAASALVGILSLAAIGINPNNNTAADYPIFSQATGMLALTVGMITLIGSLIAAGKLHKLLPQRPVIWPNHSMFTSLLLILTVGFVVLGSVSIEGFPLFWAIIGGLFFSSLFGLFFSIRVGGADMPITISLLNSLSGVAGAIAGMAVGDILLVAVGGIVGASGLLLTQIMCRAMNRKLMSILMASGAKATPAATTPTTASKQEKEEVAAPTPAKAEKT	hallmark_hmm	common_virus	NaN	.	0	3720	GCA_000467975.1|KI260078.1@region_1_3720@tool_cenote_CDS_0001	shell	ambiguous	low	123	0.132	GCA_000467975.1_01024
GCA_000467975.1|KI260078.1@region_1_3720@tool_cenote	cenote	CDS	931	1245	GCA_000467975.1	KI260078.1	GCA_000467975.1|KI260078.1	GCA_000467975.1_KI260078.1	GCA_000467975.1|KI260078.1	GCA_000467975_1_85	GCA_000467975_1_85	932	1246	GCA_000467975_1_85_2	GCA_000467975_1_85_2	-	3720	.	pfam12769	4TM region of pyridine nucleotide transhydrogenase, mitoch. PNTB_4TM is the region upstream of family PNTB, pfam02233, that carries four of this transporters transmembrane regions. PNTB is the beta-subunit of pyridine nucleotide transhydrogenase. This family forms part of the Proton-translocating Transhydrogenase (PTH) Family.	MNPIILIIVLIASTLIGYKLISNVPSLLHTPLMSGMNALSGVTVIGAIAAAGLSFKFGHDGKLILGQIFGGLAIILATINVVGGFGVTHRMLRMFSKKKKGGDQ*	mmseqs_cdd	nonviral_gene	NaN	.	0	3720	GCA_000467975.1|KI260078.1@region_1_3720@tool_cenote_CDS_0002	persistent	direct	high	314	0.997	GCA_000467975.1_01025
GCA_000467975.1|KI260078.1@region_1_3720@tool_cenote	cenote	CDS	1359	2516	GCA_000467975.1	KI260078.1	GCA_000467975.1|KI260078.1	GCA_000467975.1_KI260078.1	GCA_000467975.1|KI260078.1	GCA_000467975_1_85	GCA_000467975_1_85	1360	2517	GCA_000467975_1_85_3	GCA_000467975_1_85_3	-	3720	.	cd05304	Rubrum transdehydrogenase NAD-binding and catalytic domains. Transhydrogenases found in bacterial and inner mitochondrial membranes link NAD(P)(H)-dependent redox reactions to proton translocation. The energy of the proton electrochemical gradient (delta-p), generated by the respiratory electron transport chain, is consumed by transhydrogenase in NAD(P)+ reduction. Transhydrogenase is likely involved in the regulation of the citric acid cycle. Rubrum transhydrogenase has 3 components, dI, dII, and dIII. dII spans the membrane while dI and dIII protrude on the cytoplasmic/matrix side. DI contains 2 domains in Rossmann-like folds, linked by a long alpha helix, and contains a NAD binding site. Two dI polypeptides (represented in this sub-family) spontaneously form a heterotrimer with dIII in the absence of dII. In the heterotrimer, both dI chains may bind NAD, but only one is well-ordered. dIII also binds a well-ordered NADP, but in a different orientation than a classical Rossmann domain.	MIIGIPKEIMHGENRVSATPETVAKFVADGYKVLFEKGAGEGAQYHDEEYAQAGATLVDGAKAVYDGAEVILKVKEPLFNEQLNTHEVELMRKGQYLITFIHPASPVNHEMVRNLAKQGVISLTLDGIPRISRAQNLDALTSMSTCAGYKGILMAAEDFASFIPMMGTAVGMIPPAKVMVIGVGVAGLQALATAKRLGAITYAADIRPAAAEQAQSLGAKIVDTTVPAELAIAEGGYANKLPDDVLAKEREALKATIQDMDIVFCSALIPGKVAPIIITEEMVKGMKRGSVIVDISIDQGGNCEITPKGTKEVKHGVMIQGIKNIPGMLPKSSTWMFAQNMYNLMKYLTKNGRIELDMNDEVCSKILVTRDGEIKHAGTREAMGL*	mmseqs_cdd	nonviral_gene	NaN	.	0	3720	GCA_000467975.1|KI260078.1@region_1_3720@tool_cenote_CDS_0003	persistent	direct	high	1157	0.999	GCA_000467975.1_01026
GCA_000467975.1|KI260078.1@region_1_3720@tool_cenote	cenote	CDS	2894	3313	GCA_000467975.1	KI260078.1	GCA_000467975.1|KI260078.1	GCA_000467975.1_KI260078.1	GCA_000467975.1|KI260078.1	GCA_000467975_1_85	GCA_000467975_1_85	2895	3314	GCA_000467975_1_85_4	GCA_000467975_1_85_4	-	3720	.	COG1970	Large-conductance mechanosensitive channel [Cell wall/membrane/envelope biogenesis]. 	MKKFIQDFKAFALKGNVVDMAVGVIIGGAFGKIVTSLVNDIMMPPISLLTGGVNFTDMKLVLSRAVVEGGEVVKPEVSWNYGNFIQTTVDFLILAFVIFLMIKAIMAAKRKEEEAPAAPAPTPPEIELLTEIRDLLKKQ*	mmseqs_cdd	nonviral_gene	NaN	.	0	3720	GCA_000467975.1|KI260078.1@region_1_3720@tool_cenote_CDS_0004	persistent	direct	high	419	0.998	GCA_000467975.1_01027
GCA_000467975.1|KI260078.1@region_1_3720@tool_cenote	cenote	CDS	3561	3719	GCA_000467975.1	KI260078.1	GCA_000467975.1|KI260078.1	GCA_000467975.1_KI260078.1	GCA_000467975.1|KI260078.1	GCA_000467975_1_85	GCA_000467975_1_85	3562	3720	GCA_000467975_1_85_5	GCA_000467975_1_85_5	-	3720	.	.	hypothetical protein	EKNLAPPLPKNTSRSCVKTRAEKVDVGTKKEEERGGEPRYPIKLLTRYLPKT*	.	hypothetical_protein	NaN	.	0	3720	GCA_000467975.1|KI260078.1@region_1_3720@tool_cenote_CDS_0005	.	unmatched_CDS	none	0	0	.
GCA_000467975.1|KI260084.1@region_1_3964@tool_cenote	cenote	CDS	1	683	GCA_000467975.1	KI260084.1	GCA_000467975.1|KI260084.1	GCA_000467975.1_KI260084.1	GCA_000467975.1|KI260084.1	GCA_000467975_1_91	GCA_000467975_1_91	1	684	GCA_000467975_1_91_1	GCA_000467975_1_91_1	-	3964	.	PFAM:PF03432.13	Relaxase-Mobilisation-nuclease-protein	MIAKISSTANLRGALGYNFKKVEKEEASILLAQGLYQNKEGTYMMAEVFADMQALIPEKCRTKKIVFHCSLNPHPDEKLSDELLVQIAKEYMEALGYDKQPYIIFKHNDIAREHIHIVSLRIDGKGRKLNDQFEKRRSKKITDTLERKYGLIPSTTQRKDQIETLQGVEQGKGNIRQQIASVARSVISHYHFCSLGEFNAILTKYKLAVEEVKTEYRRPLQNKEMEGR	common_virus_hmm	common_virus	NaN	.	0	3964	GCA_000467975.1|KI260084.1@region_1_3964@tool_cenote_CDS_0001	cloud	direct	moderate	347	0.508	GCA_000467975.1_01069
GCA_000467975.1|KI260084.1@region_1_3964@tool_cenote	cenote	CDS	680	1060	GCA_000467975.1	KI260084.1	GCA_000467975.1|KI260084.1	GCA_000467975.1_KI260084.1	GCA_000467975.1|KI260084.1	GCA_000467975_1_91	GCA_000467975_1_91	681	1061	GCA_000467975_1_91_2	GCA_000467975_1_91_2	-	3964	.	pfam19514	MobC-like protein. This family consists of several bacterial MobC-like, mobilisation proteins. MobC proteins belong to the group of relaxases. Together with MobA and MobB they bind to a single cis-active site of a mobilising plasmid, the origin of transfer (oriT) region.	MNEKIERWDRWDTRLPNPKDQQKVITLFHKSGAETKSDFVRARLLGESFKVITVDKSAEEYYRKLSELTAQVHKIGILYNQVVKAINSYHSVKTAQLLLQKLEQYASQIVALQEEAIALTIDYRKR*	mmseqs_cdd	nonviral_gene	NaN	.	0	3964	GCA_000467975.1|KI260084.1@region_1_3964@tool_cenote_CDS_0002	cloud	direct	high	380	0.997	GCA_000467975.1_01070
GCA_000467975.1|KI260084.1@region_1_3964@tool_cenote	cenote	CDS	1611	2396	GCA_000467975.1	KI260084.1	GCA_000467975.1|KI260084.1	GCA_000467975.1_KI260084.1	GCA_000467975.1|KI260084.1	GCA_000467975_1_91	GCA_000467975_1_91	1612	2397	GCA_000467975_1_91_3	GCA_000467975_1_91_3	+	3964	.	PFAM:PF00142.17	ParA-like-partition-protein	MKTLPTQASIYLGFASQKGGVGKSSLAEILASILYYEKHLPLVVVDCDGTQESFYKLRERERNLIQASKELSEQLKIHFTKFGHPAYPILRSTPDAALKDVQKYLESSERKERLVIFDFPGHAGTEALLQLSIEMDYIISPIEADPQSLVSSFAYAQTVRDLGLSFEDARIRDLLLLWNKINRSASPVVVDHYTKYAQEEEINLFDTRIYHSVKFSRELGQGGVKGVFRSSYLPPVPALRLSTGVDEWVKEVLQRFHLIRE*	phrogs_hmm	hypothetical_protein	NaN	.	0	3964	GCA_000467975.1|KI260084.1@region_1_3964@tool_cenote_CDS_0003	cloud	direct	high	785	0.999	GCA_000467975.1_01071
GCA_000467975.1|KI260084.1@region_1_3964@tool_cenote	cenote	CDS	2400	2861	GCA_000467975.1	KI260084.1	GCA_000467975.1|KI260084.1	GCA_000467975.1_KI260084.1	GCA_000467975.1|KI260084.1	GCA_000467975_1_91	GCA_000467975_1_91	2401	2862	GCA_000467975_1_91_4	GCA_000467975_1_91_4	+	3964	.	pfam11888	Protein of unknown function (DUF3408). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 128 to 160 amino acids in length.	MPSIQEKRQKILSAKLQEMGNIGVTKRSAEESPFFDQPVELEPQEAPVPTEEISEDVIPTMVRPKSNKEREFSFQEYQKRFFAPSRDGIGKSGFTIHGEILQTLRDVLRDVRSKATLTAYIENILLEHLKEHQAMLNKTAAQYKRNPTINLDL*	mmseqs_cdd	nonviral_gene	NaN	.	0	3964	GCA_000467975.1|KI260084.1@region_1_3964@tool_cenote_CDS_0004	cloud	direct	high	461	0.998	GCA_000467975.1_01072
GCA_000467975.1|KI260084.1@region_1_3964@tool_cenote	cenote	CDS	2864	3586	GCA_000467975.1	KI260084.1	GCA_000467975.1|KI260084.1	GCA_000467975.1_KI260084.1	GCA_000467975.1|KI260084.1	GCA_000467975_1_91	GCA_000467975_1_91	2865	3587	GCA_000467975_1_91_5	GCA_000467975_1_91_5	+	3964	.	PF13498.6	Domain of unknown function (DUF4122)	MQTILLNVLLLLVIIWVLLLIRYTYCTKFSRTCKQEQEQVTPKEERNGEVKPYVLVGKSKGLSPSDFPKVPKTSSSEKTVENANNFAESEVSEQQEKTEEVPTISEAENELHVAYTMETVDEDEVLREELLLTPDPTPEVSPSAILARDLVRMGRWSKHDDTLDEEDEAEVQVTLSKVQGTDLIEKYKENLKAQESKHTKLLEAMYRAEEAQIQSDVVKMEYLPRQEPQGGNERTLDYYL*	hhsuite_tools	hypothetical_protein	NaN	.	0	3964	GCA_000467975.1|KI260084.1@region_1_3964@tool_cenote_CDS_0005	cloud	direct	high	722	0.999	GCA_000467975.1_01073
GCA_000467975.1|KI260084.1@region_1_3964@tool_cenote	cenote	CDS	3735	3956	GCA_000467975.1	KI260084.1	GCA_000467975.1|KI260084.1	GCA_000467975.1_KI260084.1	GCA_000467975.1|KI260084.1	GCA_000467975_1_91	GCA_000467975_1_91	3736	3957	GCA_000467975_1_91_6	GCA_000467975_1_91_6	+	3964	.	PDB:2IFO_A	Filamentous-Major-Coat-protein	MNRKKIALMLLLIATATAGAYAQGNGMAGINEATKMVTSYFDPGTKLIYAVGAVVGLIGGIKVYNKFVRREVA*	hallmark_hmm	common_virus	NaN	.	0	3964	GCA_000467975.1|KI260084.1@region_1_3964@tool_cenote_CDS_0006	shell	direct	high	221	0.995	GCA_000467975.1_01074