core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_000477535.1|AWGW01000011.1@region_1_6888@tool_cenote	cenote	CDS	587	1600	GCA_000477535.1	AWGW01000011.1	GCA_000477535.1|AWGW01000011.1	GCA_000477535.1_AWGW01000011.1	GCA_000477535.1|AWGW01000011.1	GCA_000477535_1_10	GCA_000477535_1_10	588	1601	GCA_000477535_1_10_1	GCA_000477535_1_10_1	-	6888	.	UniProt:tr|A0A0G2UMC9_9VIRU	DNA-pilot-protein	MYTFFNLHRGELTSPLYDNRKNIAPVVGGAIIAGASSILGSMLNAKSTNDNNKLQQQLVNDANAYNTPGMQMQRFQNAGLNPYMMLGQVNAGNQTSVASTSPVDYSSGIQGVGNAANTLIQAASANSQIEVNKATIAKTESETALNQIDAQTRAAENAARINQLVKQGVLTQQQADNLSQQFDLTMLTWDELRKQPGLANLLSAEQIENLKAATGKIGSEKKGLDLQNGITAKFGEKQAAATLGNTLSQTGVNHANIGLMGSQIGLNGTYMDLNRGQLGVLRNQQNSAYWDSREKKRNYQYNKAKFDKPNLDWHFDKWISPLLNFVGKAGSAYILKK*	hallmark_hmm	common_virus	NaN	.	0	6888	GCA_000477535.1|AWGW01000011.1@region_1_6888@tool_cenote_CDS_0001	cloud	direct	high	1013	0.999	GCA_000477535.1_01018
GCA_000477535.1|AWGW01000011.1@region_1_6888@tool_cenote	cenote	CDS	1612	2046	GCA_000477535.1	AWGW01000011.1	GCA_000477535.1|AWGW01000011.1	GCA_000477535.1_AWGW01000011.1	GCA_000477535.1|AWGW01000011.1	GCA_000477535_1_10	GCA_000477535_1_10	1613	2047	GCA_000477535_1_10_2	GCA_000477535_1_10_2	-	6888	.	.	hypothetical protein	MKNNFLSNRQVNYANNVVTEQPVVTTLDVEATELFENLNPILSNGHRANLITRLVDKNVPREVADVISQLVSNVPHDSQTNHYTDEQIQAAIVSRHYQNEIELDIVRNALDEISKELFPDEPAPTEPKPTEPTPPADPAPSDPT*	.	hypothetical_protein	NaN	.	0	6888	GCA_000477535.1|AWGW01000011.1@region_1_6888@tool_cenote_CDS_0002	cloud	direct	high	434	0.998	GCA_000477535.1_01019
GCA_000477535.1|AWGW01000011.1@region_1_6888@tool_cenote	cenote	CDS	2052	4190	GCA_000477535.1	AWGW01000011.1	GCA_000477535.1|AWGW01000011.1	GCA_000477535.1_AWGW01000011.1	GCA_000477535.1|AWGW01000011.1	GCA_000477535_1_10	GCA_000477535_1_10	2053	4191	GCA_000477535_1_10_3	GCA_000477535_1_10_3	-	6888	.	PFAM:PF02305.16	Major-Capsid-Protein	MSKVPKISVNPAKRPRNGFDRSETHLYSQPAGMILPVYQMFMQPNDHVSIDTRSIVQAQTLKGRPFLGMKQNFAFYFVPCRLMYSYSKALFTGLKPKNTLISSLLSNNAAQTAATKPVKAPVFKPYQVFARFAGAPDESGNIPDMSTYTTNSANQGTKIFGGAVDSPSTPTGFNEDPGFFGGKNSRPNGRQSGNDDVLASAKPASGVPTGSFNDVQPEIGNSPFGKYLVQKSPFYDALGYPLLPSYVRFCDLFRYGAMPYIGESINVNEFNASMFAYEANLFYFLAYQKIYQDHFLDSNFENVNPLSYNVDDLFSTDSMQSKFDLKVDIKSLDRALDIFSPRYVKYNKDLLSNIHPSPLFIDDVSQTIKSFVGSDTVWSGNNTSIVKDSPGFVSAANLRNLFAFDKMQQISSRAPKTYKGQMLAHYGVNVADDMTESIYCGGFQKVLEVNPVIATSDGQAADSSTNFGQQGSYIDSGQSGHVNFDAKEHGVLMCVSWFSPASLYDSDGIDAFNVKFAREDYFVPEMEDLGMQPIDYSRLLPPWASLSDYRLPDMSGAVEEYYSKHQSDVKAAYDKLYRNSRLSEHGRALGNNSSKFPAEKVYGWQPRYHEYKSGADYIHGEFKTGRSMQVLTLHRPTPFNYQLGVGMIKGRDFPNKNFNGVPAGFLFVDPACTNEVVEVNYDGTEKTDPFRISTEFNVSYISDMSVSGMPKV*	hallmark_hmm	common_virus	NaN	.	0	6888	GCA_000477535.1|AWGW01000011.1@region_1_6888@tool_cenote_CDS_0003	cloud	direct	high	2138	1.0	GCA_000477535.1_01020
GCA_000477535.1|AWGW01000011.1@region_1_6888@tool_cenote	cenote	CDS	4208	5968	GCA_000477535.1	AWGW01000011.1	GCA_000477535.1|AWGW01000011.1	GCA_000477535.1_AWGW01000011.1	GCA_000477535.1|AWGW01000011.1	GCA_000477535_1_10	GCA_000477535_1_10	4209	5969	GCA_000477535_1_10_4	GCA_000477535_1_10_4	-	6888	.	PFAM:PF05840.12	Rep-protein	MHPLVELVKDKAVLMPCTSPIIVENNGRKYAVACGKCECCLHKKATIWRTRLRQEMKDNKFCLFFTLTYDNEHVPFFGRAKNNDFYTLDGEEGVQLKGDDNLTYSPKRSVPTSLCRDGVPTITNFDVCDSFAVVSRVDAQKFMKRFRWHLFHLLVKHYKLIFQDKLFTFTQYLGYDGSIPFKEWLDDLDTETYDLYYSVYQYYLTDYEKKKESCKQSVRYFICSEYTPTTFRPHFHGLFWFDDEKAFSYAPRCIFKAWKMCAEININVQPVSGDASAYVSKYVTGNSNLPPVLQAKSTRTFCLASKGPAIGYKSFSDKEVLEMFTRRCIFRSYETISKKGKLSGVSAVPSSAVGRYFPKCYQYSTLSYVDKFRVYTRFIKLSKHDGVEKIDIPASLACFEWYKENTRLYPTTYVDCYGDTHTHDDCWFHQADIAAARACLNWCVKYECHPNHYIYMLDWFWNEYAQFQLYQQCKLLEKFNDVITYDGISIPNYDYQLGADYSFLAMLPFRKEDAVNNHEINTILESHDLHVDLFYDHNNELLDREYLTPYFEYNRPHFKEYLLKVRDDVMNSLKSAKANKQLDFAV*	rep_hall_hmm	common_virus	NaN	.	0	6888	GCA_000477535.1|AWGW01000011.1@region_1_6888@tool_cenote_CDS_0004	cloud	direct	high	1760	0.999	GCA_000477535.1_01021
GCA_000477535.1|AWGW01000011.1@region_1_6888@tool_cenote	cenote	CDS	5968	6195	GCA_000477535.1	AWGW01000011.1	GCA_000477535.1|AWGW01000011.1	GCA_000477535.1_AWGW01000011.1	GCA_000477535.1|AWGW01000011.1	GCA_000477535_1_10	GCA_000477535_1_10	5969	6196	GCA_000477535_1_10_5	GCA_000477535_1_10_5	-	6888	.	.	hypothetical protein	MFTSQNILLKKVVDMKNIKLNYPIVECCQMSIFLERRISKHGDKELIVFRLEFENGQYYFFKTFDSLIEFIKTNY*	.	hypothetical_protein	NaN	.	0	6888	GCA_000477535.1|AWGW01000011.1@region_1_6888@tool_cenote_CDS_0005	cloud	direct	high	227	0.996	GCA_000477535.1_01022
GCA_000477535.1|AWGW01000011.1@region_1_6888@tool_cenote	cenote	CDS	6134	6574	GCA_000477535.1	AWGW01000011.1	GCA_000477535.1|AWGW01000011.1	GCA_000477535.1_AWGW01000011.1	GCA_000477535.1|AWGW01000011.1	GCA_000477535_1_10	GCA_000477535_1_10	6135	6575	GCA_000477535_1_10_6	GCA_000477535_1_10_6	-	6888	.	PFAM:PF08291.10	Peptidase-M15	MLETDVKLSEHFTLFDLCKVKKYGRYNEPTPFAFDNLKLLAKFLDTLRYALTRPIIVNSAFRNVNINRRVGGVPNSDHIKGLAADIRVYGMTPIKLARFIRDNPLLNARVGEVIIYPTFVHVSINRYVHKSEYFIKKGSRYEKYQA*	common_virus_hmm	common_virus	NaN	.	0	6888	GCA_000477535.1|AWGW01000011.1@region_1_6888@tool_cenote_CDS_0006	cloud	direct	high	440	0.998	GCA_000477535.1_01023
GCA_000477535.1|AWGW01000011.1@region_1_6888@tool_cenote	cenote	CDS	6626	6802	GCA_000477535.1	AWGW01000011.1	GCA_000477535.1|AWGW01000011.1	GCA_000477535.1_AWGW01000011.1	GCA_000477535.1|AWGW01000011.1	GCA_000477535_1_10	GCA_000477535_1_10	6627	6803	GCA_000477535_1_10_7	GCA_000477535_1_10_7	-	6888	.	.	hypothetical protein	MNLSTKINVVTVIDTESMIVYQQVYLNNYDAAHYDFKRQCELHKFDITNGWTAYLKEF*	.	hypothetical_protein	NaN	.	0	6888	GCA_000477535.1|AWGW01000011.1@region_1_6888@tool_cenote_CDS_0007	cloud	direct	high	176	0.994	GCA_000477535.1_01024
GCA_000477535.1|AWGW01000004.1@region_1_9803@tool_cenote	cenote	CDS	1347	2552	GCA_000477535.1	AWGW01000004.1	GCA_000477535.1|AWGW01000004.1	GCA_000477535.1_AWGW01000004.1	GCA_000477535.1|AWGW01000004.1	GCA_000477535_1_3	GCA_000477535_1_3	1348	2553	GCA_000477535_1_3_1	GCA_000477535_1_3_1	-	9803	.	PRK05321	nicotinate phosphoribosyltransferase; Provisional	MKQIINHFTDDDLYKLSMCCSVIDNYPRAQVKYQFVDRNNTVYPTGFADELRRQIEALEGVIITDDEIDFMKRRCSYMPHWFFTYLRGYRFSREWVNVSQDIDGHLHVEFEGSWSDTILLEVKVLAMISELFYIMTGQIARLDYVQLYNKTCQKAERLLAAGCVFSDFGTRRRASFEAEDTVVRALKDTYQSRDWKGRLVGTSNVYIAMTHDLQPVGTMAHEFVCAIGGMFGPQMANHLAMNAWRNTFRGALGTYLYDSFGWDIFSLNFSEDFANLFKGLRIDSGNNREQLMKIVEKYRSLGIDSRTKQVVFSNALNTDSAIEIQQYAKDYCLPSFGIGTHFTNDFEGIEPMNIVIKLVASKITECWPYYNDTCKLSEDLGKHTGKPEVIRRFMEALHMKE*	mmseqs_cdd	nonviral_gene	NaN	.	0	9803	GCA_000477535.1|AWGW01000004.1@region_1_9803@tool_cenote_CDS_0001	persistent	direct	high	1205	0.999	GCA_000477535.1_00149
GCA_000477535.1|AWGW01000004.1@region_1_9803@tool_cenote	cenote	CDS	2868	3782	GCA_000477535.1	AWGW01000004.1	GCA_000477535.1|AWGW01000004.1	GCA_000477535.1_AWGW01000004.1	GCA_000477535.1|AWGW01000004.1	GCA_000477535_1_3	GCA_000477535_1_3	2869	3783	GCA_000477535_1_3_2	GCA_000477535_1_3_2	-	9803	.	PDB:3JA7_C	Portal-Protein	MKKRIIYCLVLMLGLFAQEAMALRLRIRVPSGSSDGSTSGYTWIVYIIVGVLIVIGLYQYFLKAKATLRQFGSGLRTDSNSNLSQDQQRKMLLSAIYAENDKCYLNAIKTGLVKDDCAEVLERDWGIYDHSSAIDALDDLKLACTKDYMPNIAEAFKLKEQKAIEQYLNETFVNKNEAKACSKQIERAFKTIGNLVKEGIVRDEADFTRIGGIGFEATRLVFIARMCAEKKYISEEEMWQYVDFVDELVHKSLSSWEDYGKSYIIGYTLWGTDSYSMGQTKKIFNKLISDPKSPWKTFSFAKKA*	hallmark_hmm	common_virus	NaN	.	0	9803	GCA_000477535.1|AWGW01000004.1@region_1_9803@tool_cenote_CDS_0002	persistent	direct	high	914	0.999	GCA_000477535.1_00150
GCA_000477535.1|AWGW01000004.1@region_1_9803@tool_cenote	cenote	CDS	3891	4793	GCA_000477535.1	AWGW01000004.1	GCA_000477535.1|AWGW01000004.1	GCA_000477535.1_AWGW01000004.1	GCA_000477535.1|AWGW01000004.1	GCA_000477535_1_3	GCA_000477535_1_3	3892	4794	GCA_000477535_1_3_3	GCA_000477535_1_3_3	-	9803	.	pfam06889	Protein of unknown function (DUF1266). This family consists of several hypothetical bacterial proteins of around 235 residues in length. Members of this family seem to be found exclusively in the Enterobacteria Salmonella typhimurium and Escherichia coli. The function of this family is unknown.	MKKKLTTILVIMLCFVAQYAEAFRIRVKVPSSNQGGGDSSSWISTAVICGIILYVVIKYWSFFKQLFRFFTSSAKVEKNTDLTQDQQRKLLLSGVFAAQKAALYNVVKTGLTADEREKMFNQGWNISDQASAIETLDYLRLSGTRRYFPQVVEALKLKNKQEIQQYLRDTFEDSEDINNCWEQIQFAFESMDPLMKEHIISNEADFSRIGPDAWDAGRLVFIARLCREANYINDEQLWKYVDAADEIAHRTLTSWEDFGKSYIIGRCLWCGASNYFEVMAGHAKDMYTKPNSPWKTFPFA*	mmseqs_cdd	nonviral_gene	NaN	.	0	9803	GCA_000477535.1|AWGW01000004.1@region_1_9803@tool_cenote_CDS_0003	persistent	direct	high	902	0.999	GCA_000477535.1_00151
GCA_000477535.1|AWGW01000004.1@region_1_9803@tool_cenote	cenote	CDS	4821	5669	GCA_000477535.1	AWGW01000004.1	GCA_000477535.1|AWGW01000004.1	GCA_000477535.1_AWGW01000004.1	GCA_000477535.1|AWGW01000004.1	GCA_000477535_1_3	GCA_000477535_1_3	4822	5670	GCA_000477535_1_3_4	GCA_000477535_1_3_4	-	9803	.	cd07334	Peptidase M48C Ste24p loiP-like, integral membrane protein. This subfamily contains peptidase M48 Ste24p protease loiP (formerly yggG)-like family are mostly uncharacterized proteins that include E. coli loiP and ycaLG, considered to be putative metallopeptidases, containing a zinc-binding motif, HEXXH, and a COOH-terminal ER retrieval signal (KKXX). They proteolytically remove the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and golgi, binding one zinc ion per subunit.  In eukaryotes, Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification (C is cysteine; A is usually aliphatic; X is one of several amino acids) is complete. Mutation studies have shown that the HEXXH protease motif, which is extracellular but adjacent to a transmembrane domain and therefore close to the membrane surface, is critical for Ste24p activity. LoiP has been shown to be a metallopeptidase that cleaves its targets preferentially between Phe-Phe residues. It is upregulated when bacteria are subjected to media of low osmolarity, thus yggG was named LoiP (low osmolarity induced protease). Proper membrane localization of LoiP may depend on YfgC, another putative metalloprotease in this subfamily.	MNKTLSSMLLGACFMLSATPSMAQFNLKKAIGGASKAVKAATLTDADVANYVKEYIDWMDKHNQVCPENNPYSIRLKKLTQGLNDVEGIPLNFKVYYVTDVNAFACADGSVRVFSSLMDIMTDDELLGVIGHEIGHVAHKDSKNAFRTALLTSAFKDGVSSTGGKAATFSDSQFGELGEALLNATYSQKQESNADTYGYDFLKKNGKNPWAMALSFEKLKKLEEDSGYQKDSKFKRMFSSHPDLDKRIKVMSERATKDGFTRPENKMPEQPVVKKVVKGKKK*	mmseqs_cdd	nonviral_gene	NaN	.	0	9803	GCA_000477535.1|AWGW01000004.1@region_1_9803@tool_cenote_CDS_0004	persistent	direct	moderate	828	0.975	GCA_000477535.1_00152
GCA_000477535.1|AWGW01000004.1@region_1_9803@tool_cenote	cenote	CDS	5858	8059	GCA_000477535.1	AWGW01000004.1	GCA_000477535.1|AWGW01000004.1	GCA_000477535.1_AWGW01000004.1	GCA_000477535.1|AWGW01000004.1	GCA_000477535_1_3	GCA_000477535_1_3	5859	8060	GCA_000477535_1_3_5	GCA_000477535_1_3_5	-	9803	.	COG3808	Na+ or H+-translocating membrane pyrophosphatase  [Energy production and conversion]. 	MNIPTVFLLVPLASVTTLCMSWYFFSEMMKEEEGTLKMKEIASHVRKGAMAYLRQQYKVVGIVFLVLALLFAFMAYALKIQNPWVPIAFLTGGFFSGLAGFFGMKTATYASARTANAARKGLDYGLRVAFRSGAVMGLVVVGLGLLDIAIWFLILSFVYSDGNIALITITTTMLTFGMGASTQALFARVGGGIYTKAADVGADLVGKVEADIPEDDPRNPATIADNVGDNVGDVAGMGADLYESYCGSILSTAALGATAFALNGDMQLRAVIAPMIIAAVGIFLSLIGIFLVRTKEGADMKALLRALGLGTNVSAVLIAVASFVILYLLGIENWLGLSFSVISGLVAGVIIGHATEYYTSQSYRPTQEIAKASETGSATVIIKGLGTGMISTCIPVLVIALAIMLSYLCANGFDMSMRADSISHGLYGIGIAAVGMLSTLGITLATDAYGPIADNAGGNAEMSELGQVVRQRTDALDALGNTTAATGKGFAIGSAALTALALLASYVEEIKIAMVRAVEEGRHFIDYAGQSFDPSQATMPDFMNFFQVTLMNPKVLVGAFIGAMAAFLFCGLTMGAVGRAAQSMVEEVRRQFKEIKGILEKTAQPDYGRCVEISTKSAQKEMIIPSLLAIAIPIVVGILLGVAGVLGLLVGSLSAGFTLAVFMANAGGAWDNAKKMVEEGHFGGKGSQSHKATIVGDTVGDPFKDTAGPSLNILIKLMSMVSIVMAGLTVAFI*	mmseqs_cdd	nonviral_gene	NaN	.	0	9803	GCA_000477535.1|AWGW01000004.1@region_1_9803@tool_cenote_CDS_0005	persistent	direct	high	2201	1.0	GCA_000477535.1_00153
GCA_000477535.1|AWGW01000004.1@region_1_9803@tool_cenote	cenote	CDS	8294	8395	GCA_000477535.1	AWGW01000004.1	GCA_000477535.1|AWGW01000004.1	GCA_000477535.1_AWGW01000004.1	GCA_000477535.1|AWGW01000004.1	GCA_000477535_1_3	GCA_000477535_1_3	8295	8396	GCA_000477535_1_3_6	GCA_000477535_1_3_6	+	9803	.	.	hypothetical protein	MIHTNVNDVNRQCRRYKNGFPMNVFGNVKVFSA*	.	hypothetical_protein	NaN	.	0	9803	GCA_000477535.1|AWGW01000004.1@region_1_9803@tool_cenote_CDS_0006	.	unmatched_CDS	none	0	0	.