core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_000525815.1|AODC01000001.1@region_299773_311418@tool_cenote	cenote	CDS	299772	300500	GCA_000525815.1	AODC01000001.1	GCA_000525815.1|AODC01000001.1	GCA_000525815.1_AODC01000001.1	GCA_000525815.1|AODC01000001.1	GCA_000525815_1_1	GCA_000525815_1_1@C18	1	729	GCA_000525815_1_1_329	GCA_000525815_1_1_329	-	366087	.	PDB:5EMI_A	Cell-wall-hydrolase-autolysin	MTKIWIDAGHGGKDSGASGNGLVEKNWVLTVAKQLQTELVKAGFEVGMTRTNDTFYELSDRAKKANSFKADLFISLHFNAGGGKGYEDYIYTSVPAATVEIQKIIHKNIITKVTKHGMNDRGMKKANFAVLRETAMDAILLEAGFCDSTDALILEKKAYQTDYCLGIVSAVQEIFGAMVTKYRAGKYLTSDDAISGTNIKGYLEAGTKVFVYKETEKTLNLTTTKGVPGSWVLKTEVNTGKR*	common_virus_hmm	common_virus	C18	11646	299772	311418	GCA_000525815.1|AODC01000001.1@region_299773_311418@tool_cenote_CDS_0001	persistent	direct	high	728	0.999	GCA_000525815.1_00344
GCA_000525815.1|AODC01000001.1@region_299773_311418@tool_cenote	cenote	CDS	300481	300696	GCA_000525815.1	AODC01000001.1	GCA_000525815.1|AODC01000001.1	GCA_000525815.1_AODC01000001.1	GCA_000525815.1|AODC01000001.1	GCA_000525815_1_1	GCA_000525815_1_1@C18	710	925	GCA_000525815_1_1_330	GCA_000525815_1_1_330	-	366087	.	PFAM:PF05105.11	Bacteriophage-holin	MAIAHQIDLILGTHNTTRDAVIFFYLANELISILENFVRMGMKVPEVLKNLILIFDAKSGEDEEKHDKDMD*	common_virus_hmm	common_virus	C18	11646	299772	311418	GCA_000525815.1|AODC01000001.1@region_299773_311418@tool_cenote_CDS_0002	shell	ambiguous	low	43	0.199	GCA_000525815.1_00345
GCA_000525815.1|AODC01000001.1@region_299773_311418@tool_cenote	cenote	CDS	300653	300904	GCA_000525815.1	AODC01000001.1	GCA_000525815.1|AODC01000001.1	GCA_000525815.1_AODC01000001.1	GCA_000525815.1|AODC01000001.1	GCA_000525815_1_1	GCA_000525815_1_1@C18	882	1133	GCA_000525815_1_1_331	GCA_000525815_1_1_331	-	366087	.	PFAM:PF05105.11	Bacteriophage-holin	MEVILKFGILGFGAIFGYLFGEVDLLVKVLVCFIVADYISGLLASGYLGELSSKMGFKGIAKKNRYLNFSGYCASNRFDSGNA*	common_virus_hmm	common_virus	C18	11646	299772	311418	GCA_000525815.1|AODC01000001.1@region_299773_311418@tool_cenote_CDS_0003	shell	direct	high	251	0.996	GCA_000525815.1_00345
GCA_000525815.1|AODC01000001.1@region_299773_311418@tool_cenote	cenote	CDS	300923	301459	GCA_000525815.1	AODC01000001.1	GCA_000525815.1|AODC01000001.1	GCA_000525815.1_AODC01000001.1	GCA_000525815.1|AODC01000001.1	GCA_000525815_1_1	GCA_000525815_1_1@C18	1152	1688	GCA_000525815_1_1_332	GCA_000525815_1_1_332	-	366087	.	6R5W_A	Gp15 protein	MTKIVKMSEKNEHGTLEQFYPETHAEAVKGLVSVSEEEKTIWDQKESTAGAEQKANTALNSAKDYVDTIGEGTVIFKGANLMGAGQSFKWDASKLKFGMTLLFSRYDAANNTPQDYYYHSVFLSKAQLVELAGKGILVQMPSTTYGDRKYLYVSTTGLSGHFDNSNYAAWALRQVTIM*	hhsuite_tools	hypothetical_protein	C18	11646	299772	311418	GCA_000525815.1|AODC01000001.1@region_299773_311418@tool_cenote_CDS_0004	persistent	direct	high	536	0.998	GCA_000525815.1_00346
GCA_000525815.1|AODC01000001.1@region_299773_311418@tool_cenote	cenote	CDS	301456	301935	GCA_000525815.1	AODC01000001.1	GCA_000525815.1|AODC01000001.1	GCA_000525815.1_AODC01000001.1	GCA_000525815.1|AODC01000001.1	GCA_000525815_1_1	GCA_000525815_1_1@C18	1685	2164	GCA_000525815_1_1_333	GCA_000525815_1_1_333	-	366087	.	.	hypothetical protein	MTEIKRMLQTKEDNSKEQFYPETHVAGIVGLTEYVSGQLPTGVVSVNGKAGRVLLDAEDVHAAKKSHTHEVATYTTDGFMSSFDKQKIDQLVSPEAGVTSINGKTGIVDLFASDLDAAEINHTHAEATTTESGFLSIDDKEKLDAIQVIALETIKEVIE*	.	hypothetical_protein	C18	11646	299772	311418	GCA_000525815.1|AODC01000001.1@region_299773_311418@tool_cenote_CDS_0005	persistent	direct	high	479	0.998	GCA_000525815.1_00347
GCA_000525815.1|AODC01000001.1@region_299773_311418@tool_cenote	cenote	CDS	302071	302526	GCA_000525815.1	AODC01000001.1	GCA_000525815.1|AODC01000001.1	GCA_000525815.1_AODC01000001.1	GCA_000525815.1|AODC01000001.1	GCA_000525815_1_1	GCA_000525815_1_1@C18	2300	2755	GCA_000525815_1_1_334	GCA_000525815_1_1_334	-	366087	.	PFAM:PF07602.10	tail-protein	MKLDLWKWEMLLQGREFRNKTNDNWQKLMDWSDFISTGLSAIYVYVNKADATLNNKIDTVDKAVNARVNELISGTEQLSEVVDARSDAFGARYPVLRERLNQEQLNFSKKSTIQFDASTIISMEKQDIGLLTSKKNLRSANRMFFKYIKPR*	phrogs_hmm	hypothetical_protein	C18	11646	299772	311418	GCA_000525815.1|AODC01000001.1@region_299773_311418@tool_cenote_CDS_0006	persistent	direct	high	455	0.998	GCA_000525815.1_00348
GCA_000525815.1|AODC01000001.1@region_299773_311418@tool_cenote	cenote	CDS	302541	302840	GCA_000525815.1	AODC01000001.1	GCA_000525815.1|AODC01000001.1	GCA_000525815.1_AODC01000001.1	GCA_000525815.1|AODC01000001.1	GCA_000525815_1_1	GCA_000525815_1_1@C18	2770	3069	GCA_000525815_1_1_335	GCA_000525815_1_1_335	-	366087	.	.	hypothetical protein	MATEIRVLKNVDDTVFYPKTHVTAVEGLDSATTTTSGLMPASDKTKLNGIEANAEKNNVTAIDIANWNKKQDAILVSENGSNFKITVTNAGELKATKVE*	.	hypothetical_protein	C18	11646	299772	311418	GCA_000525815.1|AODC01000001.1@region_299773_311418@tool_cenote_CDS_0007	persistent	direct	high	299	0.997	GCA_000525815.1_00349
GCA_000525815.1|AODC01000001.1@region_299773_311418@tool_cenote	cenote	CDS	302915	303967	GCA_000525815.1	AODC01000001.1	GCA_000525815.1|AODC01000001.1	GCA_000525815.1_AODC01000001.1	GCA_000525815.1|AODC01000001.1	GCA_000525815_1_1	GCA_000525815_1_1@C18	3144	4196	GCA_000525815_1_1_336	GCA_000525815_1_1_336	-	366087	.	PDB:3GS9_A	tail-protein-	MDYVIIQSMDKEVEEILTDIDYGSFSYDYEKNTSRAISFTVNKTKQNAAIFDLVGNEAILTYQGQQFVIKKCTPKSIGGTISKQITAQHICYTVQDHVQYNVKSGRKKYSIQTVLEFALQDNVLGFSYEIQGSFPLVELEDLGNKNGLELVNLCLEEFGAILFADNKKLYFYDEKSWYVRTEKQFRYLYNTEEVSVDTNTDNLKTEIKCYGKQKENADKLTGDNKYMAVVTYTSPNEAIYGKRMANAKSDDKITNNDDLLIFAKKQILDVPETALTIAYKGKEPVSERDVWYFIHEPMGFETEVKVTKIKSSHPWSKKFQEIGFSNSRRDMVRIQTQIANQSEKSERRYK*	hallmark_hmm	common_virus	C18	11646	299772	311418	GCA_000525815.1|AODC01000001.1@region_299773_311418@tool_cenote_CDS_0008	persistent	direct	high	1052	0.999	GCA_000525815.1_00350
GCA_000525815.1|AODC01000001.1@region_299773_311418@tool_cenote	cenote	CDS	303977	304795	GCA_000525815.1	AODC01000001.1	GCA_000525815.1|AODC01000001.1	GCA_000525815.1_AODC01000001.1	GCA_000525815.1|AODC01000001.1	GCA_000525815_1_1	GCA_000525815_1_1@C18	4206	5024	GCA_000525815_1_1_337	GCA_000525815_1_1_337	-	366087	.	PDB:2X8K_A	Distal-Tail-Protein	MSDLFLELNGKVHSLSETFPGLSVQEVSRQSPQLSMETAEIAGTDGVIPGMTQFKPFIFSAKCNLQALDIPDYHLAVREIYEFLFQRDSYYIWSDQMPGIRYEVHPKPVDFSRESDRVGLLTIEFDVFKGYAESRGTSLDPMTFEVDLWQMGMNLSNRDDLFYVFRENTFRVYNAGSDRVNPLMRHELDIAMTANGTPTIHNLTTGESFEYRKELQKTDVLLLNNIYPLVNNRRVGKDTNHGIITLEKGWNDFEIKGVTDVTIAFNFPFIYR*	hallmark_hmm	common_virus	C18	11646	299772	311418	GCA_000525815.1|AODC01000001.1@region_299773_311418@tool_cenote_CDS_0009	persistent	direct	high	818	0.999	GCA_000525815.1_00351
GCA_000525815.1|AODC01000001.1@region_299773_311418@tool_cenote	cenote	CDS	304792	306660	GCA_000525815.1	AODC01000001.1	GCA_000525815.1|AODC01000001.1	GCA_000525815.1_AODC01000001.1	GCA_000525815.1|AODC01000001.1	GCA_000525815_1_1	GCA_000525815_1_1@C18	5021	6889	GCA_000525815_1_1_338	GCA_000525815_1_1_338	-	366087	.	UniProtKB:A0A0R1V141_9LACO	minor-tail-protein-	MAESKSITFELNESVLTAQVGRLDEMAMVVERRFSELKMTIEDVGNADPGSKISESLGGLQSGLGTISSAFGQLGSSSEAITSGFGTAVGSVGGITDAFKNLGSSVQNGTLFSSLATGIGGMSTMLGGVSGGVQGITNLASGFMELKNHLGGLMSSIGGVGGIMGKLTSPMGLVIIGIVALVAAFTYLMTTNESFRNTVMSVVTQVAQLFGQLVASLMPIIMQIVTAVMQIGAALMPMVMQFISFFAQLLAQLMPFINMLISMLMPVIMQIVQVVMSLVSALLPSIMTVIQGIMSVIQFLIPIIMQIATVVVQIVVTIISYISKIMPIVMTIIGVIVSIITTIISYVVIIATTIASVIGKIISFIASVITAVIGIVQPIIAFITNIFTTIVTIIGAAFQMVFTVASKIWNSIMSTISGIIDGIKAVITGISTTVSSVFNGVKRIITGVFDGIKSAWGGLTDFVGNIFDGVSSAIQTVVDNVKGFVNVVIRGINGAIGLINKIPGVEIGKIPQLISGTTNFQGGFARMNEGGRGEMVVLPSGSQVIPHDATMKYARESARGNKSMLYTSQGADLARVENLLERLLQKNPVIKMDDKVVAEVVSRNQANSFDQYNYTMGGAAYS*	hallmark_hmm	common_virus	C18	11646	299772	311418	GCA_000525815.1|AODC01000001.1@region_299773_311418@tool_cenote_CDS_0010	persistent	direct	high	1868	0.999	GCA_000525815.1_00352
GCA_000525815.1|AODC01000001.1@region_299773_311418@tool_cenote	cenote	CDS	306647	307039	GCA_000525815.1	AODC01000001.1	GCA_000525815.1|AODC01000001.1	GCA_000525815.1_AODC01000001.1	GCA_000525815.1|AODC01000001.1	GCA_000525815_1_1	GCA_000525815_1_1@C18	6876	7268	GCA_000525815_1_1_339	GCA_000525815_1_1_339	-	366087	.	.	hypothetical protein	MNHDFDLEKQFAFFVVNFQMSKHDFEELTEVEKNFIMKEWENKVIFESTMLRNAVLNAEQNLNRKRNSRFIDLHKKRQKKADVNYTVNALQAISDNEAKEGKAWIDRIYGANGLRRPKNKEERGKMNGGV*	.	hypothetical_protein	C18	11646	299772	311418	GCA_000525815.1|AODC01000001.1@region_299773_311418@tool_cenote_CDS_0011	persistent	direct	high	392	0.997	GCA_000525815.1_00353
GCA_000525815.1|AODC01000001.1@region_299773_311418@tool_cenote	cenote	CDS	307093	307395	GCA_000525815.1	AODC01000001.1	GCA_000525815.1|AODC01000001.1	GCA_000525815.1_AODC01000001.1	GCA_000525815.1|AODC01000001.1	GCA_000525815_1_1	GCA_000525815_1_1@C18	7322	7624	GCA_000525815_1_1_340	GCA_000525815_1_1_340	-	366087	.	PFAM:PF12363.7	tail-protein	MFEVNDTTYILRFNKQKVKTVELTSGISLVAALTANKGILSYQVIETLFVSGLVEEKGLVPVKQKEALEIFDKLVEEQGLISLNVAVIEKLQEDMGFLFR*	phrogs_hmm	hypothetical_protein	C18	11646	299772	311418	GCA_000525815.1|AODC01000001.1@region_299773_311418@tool_cenote_CDS_0012	persistent	direct	high	302	0.997	GCA_000525815.1_00354
GCA_000525815.1|AODC01000001.1@region_299773_311418@tool_cenote	cenote	CDS	307443	307955	GCA_000525815.1	AODC01000001.1	GCA_000525815.1|AODC01000001.1	GCA_000525815.1_AODC01000001.1	GCA_000525815.1|AODC01000001.1	GCA_000525815_1_1	GCA_000525815_1_1@C18	7672	8184	GCA_000525815_1_1_341	GCA_000525815_1_1_341	-	366087	.	PDB:5A21_H	major-tail-protein	MAFEENLYCDYTPGAAKAVAGKDVILAVFNAAGDKLLAVAGQQGLTVNRSKDSIEITSKDTVGGWKSKIGGMKEWSIENDGLYVADAESHKELAKYFESDSPVCVKIINQASKKGLFGGLAIVADYSFEAPFDEAMTYSVKLDGMGALVDLTITEGGDQMPGETPVAPAE*	hallmark_hmm	common_virus	C18	11646	299772	311418	GCA_000525815.1|AODC01000001.1@region_299773_311418@tool_cenote_CDS_0013	persistent	direct	high	512	0.998	GCA_000525815.1_00355
GCA_000525815.1|AODC01000001.1@region_299773_311418@tool_cenote	cenote	CDS	307968	308357	GCA_000525815.1	AODC01000001.1	GCA_000525815.1|AODC01000001.1	GCA_000525815.1_AODC01000001.1	GCA_000525815.1|AODC01000001.1	GCA_000525815_1_1	GCA_000525815_1_1@C18	8197	8586	GCA_000525815_1_1_342	GCA_000525815_1_1_342	-	366087	.	PFAM:PF16807.4	tail-terminator	MKSLSFMRVLEAVRTMLQEKGGLDVSIVMRNQVEMPTTMIEMIDQEEEESQTAWKEKYRFAIHHYTNEQDLAGVEKIDTLIQMGFILPEGYKLVAVRHCGKQNLVKENTLIHAKTSFEVSICRELKVKI*	phrogs_hmm	nonviral_gene	C18	11646	299772	311418	GCA_000525815.1|AODC01000001.1@region_299773_311418@tool_cenote_CDS_0014	persistent	direct	high	389	0.997	GCA_000525815.1_00356
GCA_000525815.1|AODC01000001.1@region_299773_311418@tool_cenote	cenote	CDS	308635	308955	GCA_000525815.1	AODC01000001.1	GCA_000525815.1|AODC01000001.1	GCA_000525815.1_AODC01000001.1	GCA_000525815.1|AODC01000001.1	GCA_000525815_1_1	GCA_000525815_1_1@C18	8864	9184	GCA_000525815_1_1_343	GCA_000525815_1_1_343	-	366087	.	TIGR01637	phage transcriptional regulator, ArpU family. This model represents a family of phage proteins, including ArpU, called a putative autolysin regulatory protein. ArpU was described as a regulator of cellular muramidase-2 of Enterococcus hirae but appears to have been cloned from a prophage. This family appears related to the RinA family of bacteriophage transcriptional activators and to some sporulation-specific sigma factors. We propose that this is a phage transcriptional activator family. [Mobile and extrachromosomal element functions, Prophage functions, Regulatory functions, DNA interactions]	MITGLSKKPHLLRNGFLEEPQFEPVAFSARHNKEVILEARWLVEKYTEMLNQMDDLYRTILMECYVERKQDVAVMMDLPYEIAQFKRIKKRAVLELATLMGILVRK*	mmseqs_cdd	common_virus	C18	11646	299772	311418	GCA_000525815.1|AODC01000001.1@region_299773_311418@tool_cenote_CDS_0015	persistent	direct	high	320	0.997	GCA_000525815.1_00357
GCA_000525815.1|AODC01000001.1@region_299773_311418@tool_cenote	cenote	CDS	308918	309052	GCA_000525815.1	AODC01000001.1	GCA_000525815.1|AODC01000001.1	GCA_000525815.1_AODC01000001.1	GCA_000525815.1|AODC01000001.1	GCA_000525815_1_1	GCA_000525815_1_1@C18	9147	9281	GCA_000525815_1_1_344	GCA_000525815_1_1_344	-	366087	.	.	hypothetical protein	MQVLVLPENKDINYIKTVHEVKRFFCGFREISDDYGVIKKATFT*	.	hypothetical_protein	C18	11646	299772	311418	GCA_000525815.1|AODC01000001.1@region_299773_311418@tool_cenote_CDS_0016	shell	direct	high	134	0.993	GCA_000525815.1_00358
GCA_000525815.1|AODC01000001.1@region_299773_311418@tool_cenote	cenote	CDS	309064	309492	GCA_000525815.1	AODC01000001.1	GCA_000525815.1|AODC01000001.1	GCA_000525815.1_AODC01000001.1	GCA_000525815.1|AODC01000001.1	GCA_000525815_1_1	GCA_000525815_1_1@C18	9293	9721	GCA_000525815_1_1_345	GCA_000525815_1_1_345	-	366087	.	PF10654.9	Protein of unknown function (DUF2481)	MDRKLLKEKQIQLIFQLEQEENRFIRKRLIEELEFFEALGDREKGLLTAEQKLLILTPSEYREYKRTKSDVQISRIIGVSRSSLAEWKRKKGLNRKKSQPVQQEMIDVLAFHLDKTKEEIGALPASAIECQYEAFVINEANN*	hhsuite_tools	hypothetical_protein	C18	11646	299772	311418	GCA_000525815.1|AODC01000001.1@region_299773_311418@tool_cenote_CDS_0017	persistent	direct	high	428	0.998	GCA_000525815.1_00359
GCA_000525815.1|AODC01000001.1@region_299773_311418@tool_cenote	cenote	CDS	309709	310044	GCA_000525815.1	AODC01000001.1	GCA_000525815.1|AODC01000001.1	GCA_000525815.1_AODC01000001.1	GCA_000525815.1|AODC01000001.1	GCA_000525815_1_1	GCA_000525815_1_1@C18	9938	10273	GCA_000525815_1_1_346	GCA_000525815_1_1_346	+	366087	.	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain  [Transcription]. 	MELNKFVGNKIKQYREERGLNQEALAEKLHTTRQTISRYENGDRKANQDVLFELAKIFNKRLDDFFPERNLPPVDERLVTIAAHIDDDVTEEEMRDILAYIEMKKKLHRGM*	mmseqs_cdd	nonviral_gene	C18	11646	299772	311418	GCA_000525815.1|AODC01000001.1@region_299773_311418@tool_cenote_CDS_0018	persistent	direct	high	335	0.997	GCA_000525815.1_00360
GCA_000525815.1|AODC01000001.1@region_299773_311418@tool_cenote	cenote	CDS	310041	310502	GCA_000525815.1	AODC01000001.1	GCA_000525815.1|AODC01000001.1	GCA_000525815.1_AODC01000001.1	GCA_000525815.1|AODC01000001.1	GCA_000525815_1_1	GCA_000525815_1_1@C18	10270	10731	GCA_000525815_1_1_347	GCA_000525815_1_1_347	+	366087	.	PDB:3DTE_A	IrrE-protein	MILLYEKLVNKYQDEVTIREEKMPYKLPGLYLNGMIFISKDQSSIEKGCVLVEELMHYKYTVGNITKQETIMDKKQEIFARRKGYEELIPLDDIIACFYLGLREYFEVAEFLEVTEEFLRHTVSHYAEKYGPMYDYGGYFINFGNSIDVYKKF*	common_virus_hmm	common_virus	C18	11646	299772	311418	GCA_000525815.1|AODC01000001.1@region_299773_311418@tool_cenote_CDS_0019	persistent	direct	high	461	0.998	GCA_000525815.1_00361
GCA_000525815.1|AODC01000001.1@region_299773_311418@tool_cenote	cenote	CDS	310758	311417	GCA_000525815.1	AODC01000001.1	GCA_000525815.1|AODC01000001.1	GCA_000525815.1_AODC01000001.1	GCA_000525815.1|AODC01000001.1	GCA_000525815_1_1	GCA_000525815_1_1@C18	10987	11646	GCA_000525815_1_1_348	GCA_000525815_1_1_348	+	366087	.	4CYD_A	PROBABLE TRANSCRIPTION REGULATOR, PROBABLE EXPRESSION	MIIQVKFLLKKGEIIHSYRDYEEKAPQIGAILEGTAVLEGPTNEGRWMINALIGQHALFGMESLLETKTAPELTEYRVRALENGTVLFIDREFLLNYLYANPQFFHLILDEVIVRYLFTSKNYKNINQAPIVKVTRILVEIIELLHLHQTEGSIELPVYVTQTFLADYCRSSRARVTEVLEELRESGLLLSKKPITISSHENLLDQVDSFQTGNGLLTR*	hhsuite_tools	hypothetical_protein	C18	11646	299772	311418	GCA_000525815.1|AODC01000001.1@region_299773_311418@tool_cenote_CDS_0020	persistent	direct	high	659	0.998	GCA_000525815.1_00362