core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_000743465.1|KN050647.1@region_1153993_1165633@tool_cenote	cenote	CDS	1153992	1154687	GCA_000743465.1	KN050647.1	GCA_000743465.1|KN050647.1	GCA_000743465.1_KN050647.1	GCA_000743465.1|KN050647.1	GCA_000743465_1_1	GCA_000743465_1_1@C66	1	696	GCA_000743465_1_1_1135	GCA_000743465_1_1_1135	-	2852103	.	4CYD_A	PROBABLE TRANSCRIPTION REGULATOR, PROBABLE EXPRESSION	MLHTIDFSDIFSSDYSSKISFKKGEIIHSYRDYEEKAPQIGAILEGTAVLEGPTNEGRWMINALIGQHALFGMESLLETKTAPELTEYRVRALENGTVLFIDREFLLNYLYANPQFFHLILDEVIVRYLFTSKNYKNINQAPIVKVTRILVEIIELLHLHQTEGSIELPVYVTQTFLADYCRSSRARVTEVLEELRESGLLLSKKPITISSHENLLDQVDSFQTGNGLLTR*	hhsuite_tools	hypothetical_protein	C66	11641	1153992	1165633	GCA_000743465.1|KN050647.1@region_1153993_1165633@tool_cenote_CDS_0001	persistent	direct	high	695	0.999	GCA_000743465.1_01206
GCA_000743465.1|KN050647.1@region_1153993_1165633@tool_cenote	cenote	CDS	1154906	1155367	GCA_000743465.1	KN050647.1	GCA_000743465.1|KN050647.1	GCA_000743465.1_KN050647.1	GCA_000743465.1|KN050647.1	GCA_000743465_1_1	GCA_000743465_1_1@C66	915	1376	GCA_000743465_1_1_1136	GCA_000743465_1_1_1136	-	2852103	.	PDB:3DTE_A	IrrE-protein	MILLYEKLVNKYQDEVTIREEKMPYKLPGLYLNGMIFISKDQSSIEKGCVLVEELMHYKYTVGNITKQETIMDKKQEIFARRKGYEELIPLDDIIACFYLGLREYFEVAEFLEVTEEFLRHTVSHYAEKYGPMYDYGGYFINFGNSIDVYKKF*	common_virus_hmm	common_virus	C66	11641	1153992	1165633	GCA_000743465.1|KN050647.1@region_1153993_1165633@tool_cenote_CDS_0002	persistent	direct	high	461	0.998	GCA_000743465.1_01207
GCA_000743465.1|KN050647.1@region_1153993_1165633@tool_cenote	cenote	CDS	1155364	1155699	GCA_000743465.1	KN050647.1	GCA_000743465.1|KN050647.1	GCA_000743465.1_KN050647.1	GCA_000743465.1|KN050647.1	GCA_000743465_1_1	GCA_000743465_1_1@C66	1373	1708	GCA_000743465_1_1_1137	GCA_000743465_1_1_1137	-	2852103	.	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain  [Transcription]. 	MELNKFVGNKIKQYREERGLNQEALAEKLHTTRQTISRYENGDRKANQDVLFELAKIFNKRLDDFFPERNLPPVDERLVTIAAHIDDDVTEEEMRDILAYIEMKKKLHRGM*	mmseqs_cdd	nonviral_gene	C66	11641	1153992	1165633	GCA_000743465.1|KN050647.1@region_1153993_1165633@tool_cenote_CDS_0003	persistent	direct	high	335	0.997	GCA_000743465.1_01208
GCA_000743465.1|KN050647.1@region_1153993_1165633@tool_cenote	cenote	CDS	1155916	1156344	GCA_000743465.1	KN050647.1	GCA_000743465.1|KN050647.1	GCA_000743465.1_KN050647.1	GCA_000743465.1|KN050647.1	GCA_000743465_1_1	GCA_000743465_1_1@C66	1925	2353	GCA_000743465_1_1_1138	GCA_000743465_1_1_1138	+	2852103	.	PF10654.9	Protein of unknown function (DUF2481)	MDRKLLKEKQIQLIFQLEQEENRFIRKRLIEELEFFEALGDREKGLLTAEQKLLILTPSEYREYKRTKSDVQISRIIGVSRSSLAEWKRKKGLNRKKSQPVQQEMIDVLAFHLDKTKEEIGALPASAIECQYEAFVINEANN*	hhsuite_tools	hypothetical_protein	C66	11641	1153992	1165633	GCA_000743465.1|KN050647.1@region_1153993_1165633@tool_cenote_CDS_0004	persistent	direct	high	428	0.998	GCA_000743465.1_01209
GCA_000743465.1|KN050647.1@region_1153993_1165633@tool_cenote	cenote	CDS	1156356	1156772	GCA_000743465.1	KN050647.1	GCA_000743465.1|KN050647.1	GCA_000743465.1_KN050647.1	GCA_000743465.1|KN050647.1	GCA_000743465_1_1	GCA_000743465_1_1@C66	2365	2781	GCA_000743465_1_1_1139	GCA_000743465_1_1_1139	+	2852103	.	TIGR01637	phage transcriptional regulator, ArpU family. This model represents a family of phage proteins, including ArpU, called a putative autolysin regulatory protein. ArpU was described as a regulator of cellular muramidase-2 of Enterococcus hirae but appears to have been cloned from a prophage. This family appears related to the RinA family of bacteriophage transcriptional activators and to some sporulation-specific sigma factors. We propose that this is a phage transcriptional activator family. [Mobile and extrachromosomal element functions, Prophage functions, Regulatory functions, DNA interactions]	MQVLVLPENKDINYIKTVHEVKRFFADFERFRMITGLSKKPHLLRNGFLEEPQFEPVAFSARHNKEVILEARWLVEKYTEMLNQMDDLYRTILMECYVERKQDVAVMMDLPYEIAQFKRIKKRAVLELATLMGILVRK*	mmseqs_cdd	common_virus	C66	11641	1153992	1165633	GCA_000743465.1|KN050647.1@region_1153993_1165633@tool_cenote_CDS_0005	persistent	direct	high	416	0.998	GCA_000743465.1_01210
GCA_000743465.1|KN050647.1@region_1153993_1165633@tool_cenote	cenote	CDS	1157050	1157439	GCA_000743465.1	KN050647.1	GCA_000743465.1|KN050647.1	GCA_000743465.1_KN050647.1	GCA_000743465.1|KN050647.1	GCA_000743465_1_1	GCA_000743465_1_1@C66	3059	3448	GCA_000743465_1_1_1140	GCA_000743465_1_1_1140	+	2852103	.	PFAM:PF16807.4	tail-terminator	MKSLSFMRVLEAVRTMLQEKGGLDVSIVMRNQVEMPTTMIEMIDQEEEESQTAWKEKYRFAIHHYTNEQDLAGVEKIDTLIQMGFILPEGYKLVAVRHCGKQNLVKENTLIHAKTSFEVSICRELKVKI*	phrogs_hmm	nonviral_gene	C66	11641	1153992	1165633	GCA_000743465.1|KN050647.1@region_1153993_1165633@tool_cenote_CDS_0006	persistent	direct	high	389	0.997	GCA_000743465.1_01211
GCA_000743465.1|KN050647.1@region_1153993_1165633@tool_cenote	cenote	CDS	1157452	1157964	GCA_000743465.1	KN050647.1	GCA_000743465.1|KN050647.1	GCA_000743465.1_KN050647.1	GCA_000743465.1|KN050647.1	GCA_000743465_1_1	GCA_000743465_1_1@C66	3461	3973	GCA_000743465_1_1_1141	GCA_000743465_1_1_1141	+	2852103	.	PDB:5A21_H	major-tail-protein	MAFEENLYCDYTPGAAKAVAGKDVILAVFNAAGDKLLAVAGQQGLTVNRSKDSIEITSKDTVGGWKSKIGGMKEWSIENDGLYVADAESHKELAKYFESDSPVCVKIINQASKKGLFGGLAIVADYSFEAPFDEAMTYSVKLDGMGALVDLTITEGGDQMPGETPVAPAE*	hallmark_hmm	common_virus	C66	11641	1153992	1165633	GCA_000743465.1|KN050647.1@region_1153993_1165633@tool_cenote_CDS_0007	persistent	direct	high	512	0.998	GCA_000743465.1_01212
GCA_000743465.1|KN050647.1@region_1153993_1165633@tool_cenote	cenote	CDS	1158012	1158314	GCA_000743465.1	KN050647.1	GCA_000743465.1|KN050647.1	GCA_000743465.1_KN050647.1	GCA_000743465.1|KN050647.1	GCA_000743465_1_1	GCA_000743465_1_1@C66	4021	4323	GCA_000743465_1_1_1142	GCA_000743465_1_1_1142	+	2852103	.	PFAM:PF12363.7	tail-protein	MFEVNDTTYILRFNKQKVKTVELTSGISLVAALTANKGILSYQVIETLFVSGLVEEKGLVPVKQKEALEIFDKLVEEQGLISLNVAVIEKLQEDMGFLFR*	phrogs_hmm	hypothetical_protein	C66	11641	1153992	1165633	GCA_000743465.1|KN050647.1@region_1153993_1165633@tool_cenote_CDS_0008	persistent	direct	high	302	0.997	GCA_000743465.1_01213
GCA_000743465.1|KN050647.1@region_1153993_1165633@tool_cenote	cenote	CDS	1158368	1158760	GCA_000743465.1	KN050647.1	GCA_000743465.1|KN050647.1	GCA_000743465.1_KN050647.1	GCA_000743465.1|KN050647.1	GCA_000743465_1_1	GCA_000743465_1_1@C66	4377	4769	GCA_000743465_1_1_1143	GCA_000743465_1_1_1143	+	2852103	.	.	hypothetical protein	MNHDFDLEKQFAFFVVNFQMSKHDFEELTEVEKNFIMKEWENKVIFESTMLRNAVLNAEQNLNRKRNSRFIDLHKKRQKKADVNYTVNALQAISDNEAKEGKAWIDRIYGANGLRRPKNKEERGKMNGGV*	.	hypothetical_protein	C66	11641	1153992	1165633	GCA_000743465.1|KN050647.1@region_1153993_1165633@tool_cenote_CDS_0009	persistent	direct	high	393	1.0	GCA_000743465.1_01214
GCA_000743465.1|KN050647.1@region_1153993_1165633@tool_cenote	cenote	CDS	1158747	1160615	GCA_000743465.1	KN050647.1	GCA_000743465.1|KN050647.1	GCA_000743465.1_KN050647.1	GCA_000743465.1|KN050647.1	GCA_000743465_1_1	GCA_000743465_1_1@C66	4756	6624	GCA_000743465_1_1_1144	GCA_000743465_1_1_1144	+	2852103	.	UniProtKB:A0A0R1V141_9LACO	minor-tail-protein-	MAESKSITFELNESVLTAQVGRLDEMAMVVERRFSELKMTIEDVGNADPGSKISESLGGLQSGLGTISSAFGQLGSSSEAITSGFGTAVGSVGGITDAFKNLGSSVQNGTLFSSLATGIGGMSTMLGGVSGGVQGITNLASGFMELKNHLGGLMSSIGGVGGIMGKLTSPMGLVIIGIVALVAAFTYLMTTNESFRNTVMSVVTQVAQLFGQLVASLMPIIMQIVTAVMQIGAALMPMVMQFISFFAQLLAQLMPFINMLISMLMPVIMQIVQVVMSLVSALLPSIMTVIQGIMSVIQFLIPIIMQIATVVVQIVVTIISYISKIMPIVMTIIGVIVSIITTIISYVVIIATTIASVIGKIISFIASVITAVIGIVQPIIAFITNIFTTIVTIIGAAFQMVFTVASKIWNSIMSTISGIIDGIKAVITGISTTVSSVFNGVKRIITGVFDGIKSAWGGLTDFVGNIFDGVSSAIQTVVDNVKGFVNVVIRGINGAIGLINKIPGVEIGKIPQLISGTTNFQGGFARMNEGGRGEMVVLPSGSQVIPHDATMKYARESARGNKSMLYTSQGADLARVENLLERLLQKNPVIKMDDKVVAEVVSRNQANSFDQYNYTMGGAAYS*	hallmark_hmm	common_virus	C66	11641	1153992	1165633	GCA_000743465.1|KN050647.1@region_1153993_1165633@tool_cenote_CDS_0010	persistent	direct	high	1868	0.999	GCA_000743465.1_01215
GCA_000743465.1|KN050647.1@region_1153993_1165633@tool_cenote	cenote	CDS	1160612	1161430	GCA_000743465.1	KN050647.1	GCA_000743465.1|KN050647.1	GCA_000743465.1_KN050647.1	GCA_000743465.1|KN050647.1	GCA_000743465_1_1	GCA_000743465_1_1@C66	6621	7439	GCA_000743465_1_1_1145	GCA_000743465_1_1_1145	+	2852103	.	PDB:2X8K_A	Distal-Tail-Protein	MSDLFLELNGKVHSLSETFPGLSVQEVSRQSPQLSMETAEIAGTDGVIPGMTQFKPFIFSAKCNLQALDIPDYHLAVREIYEFLFQRDSYYIWSDQMPGIRYEVHPKPVDFSRESDRVGLLTIEFDVFKGYAESRGTSLDPMTFEVDLWQMGMNLSNRDDLFYVFRENTFRVYNAGSDRVNPLMRHELDIAMTANGTPTIHNLTTGESFEYRKELQKTDVLLLNNIYPLVNNRRVGKDTNHGIITLEKGWNDFEIKGVTDVTIAFNFPFIYR*	hallmark_hmm	common_virus	C66	11641	1153992	1165633	GCA_000743465.1|KN050647.1@region_1153993_1165633@tool_cenote_CDS_0011	persistent	direct	high	818	0.999	GCA_000743465.1_01216
GCA_000743465.1|KN050647.1@region_1153993_1165633@tool_cenote	cenote	CDS	1161440	1162576	GCA_000743465.1	KN050647.1	GCA_000743465.1|KN050647.1	GCA_000743465.1_KN050647.1	GCA_000743465.1|KN050647.1	GCA_000743465_1_1	GCA_000743465_1_1@C66	7449	8585	GCA_000743465_1_1_1146	GCA_000743465_1_1_1146	+	2852103	.	PDB:3GS9_A	tail-protein-	MDYVIIQSMDKEVEEILTDIDYGSFSYDYEKNTSRAISFTVNKTKQNAAIFDLVGNEAILTYQGQQFVIKKCTPKSIGGTISKQITAQHICYTVQDHVQYNVKSGRKKYSIQTVLEFALQDNVLGFSYEIQGSFPLVELEDLGNKNGLELVNLCLEEFGAILFADNKKLYFYDEKSWYVRTEKQFRYLYNTEEVSVDTNTDNLKTEIKCYGKQKENADKLTGDNKYMAVVTYTSPNEAIYGKRMANAKSDDKITNNDDLLIFAKKQILDVPETALTIAYKGKEPVSERDVWYFIHEPMGFETEVKVTKIKSSHPWSKKFQEIGFSNSRRDMVRIQTQIANQVKKASVDTNKINSFSSIAMNAYDSRILTEVVGVVDGD*	hallmark_hmm	common_virus	C66	11641	1153992	1165633	GCA_000743465.1|KN050647.1@region_1153993_1165633@tool_cenote_CDS_0012	persistent	direct	high	1136	0.999	GCA_000743465.1_01217
GCA_000743465.1|KN050647.1@region_1153993_1165633@tool_cenote	cenote	CDS	1162566	1162865	GCA_000743465.1	KN050647.1	GCA_000743465.1|KN050647.1	GCA_000743465.1_KN050647.1	GCA_000743465.1|KN050647.1	GCA_000743465_1_1	GCA_000743465_1_1@C66	8575	8874	GCA_000743465_1_1_1147	GCA_000743465_1_1_1147	+	2852103	.	.	hypothetical protein	MATEIRVLKNVDDTVFYPKTHVTAVEGLDSATTTTSGLMPASDKTKLNGIEANAEKNNVTAIDIANWNKKQDAILVSENGSNFKITVTNAGELKATKVE*	.	hypothetical_protein	C66	11641	1153992	1165633	GCA_000743465.1|KN050647.1@region_1153993_1165633@tool_cenote_CDS_0013	persistent	direct	high	299	0.997	GCA_000743465.1_01218
GCA_000743465.1|KN050647.1@region_1153993_1165633@tool_cenote	cenote	CDS	1162880	1163455	GCA_000743465.1	KN050647.1	GCA_000743465.1|KN050647.1	GCA_000743465.1_KN050647.1	GCA_000743465.1|KN050647.1	GCA_000743465_1_1	GCA_000743465_1_1@C66	8889	9464	GCA_000743465_1_1_1148	GCA_000743465_1_1_1148	+	2852103	.	PFAM:PF07602.10	tail-protein	MKLDLWKWEMLLQGREFRNKTNDNWQKLMDWSDFISTGLSAIYVYVNKADATLNNKIDTVDKAVNARVNELISGTEQLSEVVDARSDAFGARYPVLRERLNQEQLNFSKKSTIQFDASTIISMEKQDIGLLTSKKISEAQTVCFLNISSLDEEADIVLEKTGETSFSDNLTSLVFAKIGTNERYQMEPVGA*	phrogs_hmm	hypothetical_protein	C66	11641	1153992	1165633	GCA_000743465.1|KN050647.1@region_1153993_1165633@tool_cenote_CDS_0014	persistent	direct	high	575	0.998	GCA_000743465.1_01219
GCA_000743465.1|KN050647.1@region_1153993_1165633@tool_cenote	cenote	CDS	1163470	1163949	GCA_000743465.1	KN050647.1	GCA_000743465.1|KN050647.1	GCA_000743465.1_KN050647.1	GCA_000743465.1|KN050647.1	GCA_000743465_1_1	GCA_000743465_1_1@C66	9479	9958	GCA_000743465_1_1_1149	GCA_000743465_1_1_1149	+	2852103	.	.	hypothetical protein	MTEIKRMLQTKEDNSKEQFYPETHVAGIVGLTEYVSGQLPTGVVSVNGKAGRVLLDAEDVHAAKKSHTHEVATYTTDGFMSSFDKQKIDQLVSPEAGVTSINGKTGIVDLFASDLDAAEINHTHAEATTTESGFLSIDDKEKLDAIQVIALETIKEVIE*	.	hypothetical_protein	C66	11641	1153992	1165633	GCA_000743465.1|KN050647.1@region_1153993_1165633@tool_cenote_CDS_0015	persistent	direct	high	479	0.998	GCA_000743465.1_01220
GCA_000743465.1|KN050647.1@region_1153993_1165633@tool_cenote	cenote	CDS	1163946	1164482	GCA_000743465.1	KN050647.1	GCA_000743465.1|KN050647.1	GCA_000743465.1_KN050647.1	GCA_000743465.1|KN050647.1	GCA_000743465_1_1	GCA_000743465_1_1@C66	9955	10491	GCA_000743465_1_1_1150	GCA_000743465_1_1_1150	+	2852103	.	6R5W_A	Gp15 protein	MTKIVKMSEKNEHGTLEQFYPETHAEAVKGLVSVSEEEKTIWDQKESTAGAEQKANTALNSAKDYVDTIGEGTVIFKGANLMGAGQSFKWDASKLKFGMTLLFSRYDAANNTPQDYYYHSVFLSKAQLVELAGKGILVQMPSTTYGDRKYLYVSTTGLSGHFDNSNYAAWALRQVTIM*	hhsuite_tools	hypothetical_protein	C66	11641	1153992	1165633	GCA_000743465.1|KN050647.1@region_1153993_1165633@tool_cenote_CDS_0016	persistent	direct	high	536	0.998	GCA_000743465.1_01221
GCA_000743465.1|KN050647.1@region_1153993_1165633@tool_cenote	cenote	CDS	1164501	1164923	GCA_000743465.1	KN050647.1	GCA_000743465.1|KN050647.1	GCA_000743465.1_KN050647.1	GCA_000743465.1|KN050647.1	GCA_000743465_1_1	GCA_000743465_1_1@C66	10510	10932	GCA_000743465_1_1_1151	GCA_000743465_1_1_1151	+	2852103	.	PFAM:PF05105.11	Bacteriophage-holin	MEVILKFGILGFGAIFGYLFGEVDLLVKVLVCFIVADYISGLLASGYLGELSSKMGFKGIAKKIAILILVAIAHQIDLILGTHNTTRDAVIFFYLANELISILENFVRMGMKVPEVLKNLILIFDAKSGEDEEKHDKDMD*	common_virus_hmm	common_virus	C66	11641	1153992	1165633	GCA_000743465.1|KN050647.1@region_1153993_1165633@tool_cenote_CDS_0017	persistent	direct	high	422	0.998	GCA_000743465.1_01222
GCA_000743465.1|KN050647.1@region_1153993_1165633@tool_cenote	cenote	CDS	1164904	1165632	GCA_000743465.1	KN050647.1	GCA_000743465.1|KN050647.1	GCA_000743465.1_KN050647.1	GCA_000743465.1|KN050647.1	GCA_000743465_1_1	GCA_000743465_1_1@C66	10913	11641	GCA_000743465_1_1_1152	GCA_000743465_1_1_1152	+	2852103	.	PDB:5EMI_A	Cell-wall-hydrolase-autolysin	MTKIWIDAGHGGKDSGASGNGLVEKNWVLTVAKQLQTELVKAGFEVGMTRTNDTFYELSDRAKKANSFKADLFISLHFNAGGGKGYEDYIYTSVPAATVEIQKIIHKNIITKVTKHGMNDRGMKKANFAVLRETAMDAILLEAGFCDSTDALILEKKAYQTDYCLGIVSAVQEIFGAMVTKYRAGKYLTSDDAISGTNIKGYLEAGTKVFVYKETEKTLNLTTTKGVPGSWVLKTEVNTGKR*	common_virus_hmm	common_virus	C66	11641	1153992	1165633	GCA_000743465.1|KN050647.1@region_1153993_1165633@tool_cenote_CDS_0018	persistent	direct	high	728	0.999	GCA_000743465.1_01223