core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_000763635.1|JQHF01000013.1@region_1_3068@tool_cenote	cenote	CDS	1	291	GCA_000763635.1	JQHF01000013.1	GCA_000763635.1|JQHF01000013.1	GCA_000763635.1_JQHF01000013.1	GCA_000763635.1|JQHF01000013.1	GCA_000763635_1_13	GCA_000763635_1_13	2	292	GCA_000763635_1_13_1	GCA_000763635_1_13_1	+	3068	.	.	hypothetical protein	FKQKGKSMTQETERRQGMFVIASFDRMFTRERKNQDGTFTKTHYVGLIIRSETETRLCEVRTKHPEKYEGYKPQQIVSMQVFPRAFKDNIYFSDEA*	.	hypothetical_protein	NaN	.	0	3068	GCA_000763635.1|JQHF01000013.1@region_1_3068@tool_cenote_CDS_0001	shell	direct	moderate	269	0.924	GCA_000763635.1_01758
GCA_000763635.1|JQHF01000013.1@region_1_3068@tool_cenote	cenote	CDS	378	599	GCA_000763635.1	JQHF01000013.1	GCA_000763635.1|JQHF01000013.1	GCA_000763635.1_JQHF01000013.1	GCA_000763635.1|JQHF01000013.1	GCA_000763635_1_13	GCA_000763635_1_13	379	600	GCA_000763635_1_13_2	GCA_000763635_1_13_2	+	3068	.	CDD:PHA00979	putative-major-coat-protein	MKFQNLKNKAKYALATVTVSAMSAPVMAEGILDTVKQEITGYKAEIIALGAIVVGISIAFAVIRIGKRGANAV*	hallmark_hmm	common_virus	NaN	.	0	3068	GCA_000763635.1|JQHF01000013.1@region_1_3068@tool_cenote_CDS_0002	cloud	direct	high	221	0.995	GCA_000763635.1_01759
GCA_000763635.1|JQHF01000013.1@region_1_3068@tool_cenote	cenote	CDS	609	911	GCA_000763635.1	JQHF01000013.1	GCA_000763635.1|JQHF01000013.1	GCA_000763635.1_JQHF01000013.1	GCA_000763635.1|JQHF01000013.1	GCA_000763635_1_13	GCA_000763635_1_13	610	912	GCA_000763635_1_13_3	GCA_000763635_1_13_3	+	3068	.	.	hypothetical protein	MGYQVGRICYETEQEAVNVLMTQVSPTIDKDGVLHHAVFDGKAWKYQEQTVKLTFPQCEYGEFAQAGRELGYQLVLIMVSLFLIVIAVKVVGMISHKEEE*	.	hypothetical_protein	NaN	.	0	3068	GCA_000763635.1|JQHF01000013.1@region_1_3068@tool_cenote_CDS_0003	cloud	direct	high	302	0.997	GCA_000763635.1_01760
GCA_000763635.1|JQHF01000013.1@region_1_3068@tool_cenote	cenote	CDS	1056	1364	GCA_000763635.1	JQHF01000013.1	GCA_000763635.1|JQHF01000013.1	GCA_000763635.1_JQHF01000013.1	GCA_000763635.1|JQHF01000013.1	GCA_000763635_1_13	GCA_000763635_1_13	1057	1365	GCA_000763635_1_13_4	GCA_000763635_1_13_4	+	3068	.	PF06575.12	Protein of unknown function (DUF1132)	MKPFITEAELALFKYQLESKYFGRTFAIIFSEEILEFSKKNKFMIIEQIQWFLNRKISNDVWKIYFNDDSVLYIKIHNLKADYRDIEIQTFDFNPNSSDIFK*	hhsuite_tools	nonviral_gene	NaN	.	0	3068	GCA_000763635.1|JQHF01000013.1@region_1_3068@tool_cenote_CDS_0004	cloud	direct	high	308	0.997	GCA_000763635.1_01761
GCA_000763635.1|JQHF01000013.1@region_1_3068@tool_cenote	cenote	CDS	1306	2832	GCA_000763635.1	JQHF01000013.1	GCA_000763635.1|JQHF01000013.1	GCA_000763635.1_JQHF01000013.1	GCA_000763635.1|JQHF01000013.1	GCA_000763635_1_13	GCA_000763635_1_13	1307	2833	GCA_000763635_1_13_5	GCA_000763635_1_13_5	+	3068	.	PFAM:PF05616.12	attachment-protein	MILKSKHLILIPILAIFSNNAFAETRYYPIGNSQVRLGIDHSKSVVTDFRLDGQRFSGRIIEPATIEHIPTGARASARIPLTLEASVSRRAVLSGAFGLVKRGAALGSRLSGWGTAAYFAYEAYQAVKGDLESAGYEYSPMSKQFIKGFDDALCINSKNVSSCVPIDSSVVRAYAKGGKSREEAQQLMVMLVEKDFKTTSKAIIESRYPGAYFQSCFAAGSGVSCQISTGTLFYYGPKHGLNTETLKEDKFLQIATPSIDSNPTPFVEGTGKPEYKENIKVPAGTVVTIGPVETPEGKKTYTVTFTNPSNGGSSEASVQTNNSPAPTGNTGGSPDGNPNGKPDGKPDGNPDGNPDGNPNGKPDGKPDGKPDDRPDDRPDDRPDDRPDDKPDGKDGKDGKDGKDGKDGKDAQDLCEKHPEASACKDLGDTDYKDLEIPEKAINLELKPLDIFSTNGTCPANPTFSLGVLGTFEIPYDYFCNIARLLRPILILGTIIMCGFFAFNAVKEL*	common_virus_hmm	common_virus	NaN	.	0	3068	GCA_000763635.1|JQHF01000013.1@region_1_3068@tool_cenote_CDS_0005	cloud	direct	high	1526	0.999	GCA_000763635.1_01762
GCA_000763635.1|JQHF01000013.1@region_1_3068@tool_cenote	cenote	CDS	2835	3065	GCA_000763635.1	JQHF01000013.1	GCA_000763635.1|JQHF01000013.1	GCA_000763635.1_JQHF01000013.1	GCA_000763635.1|JQHF01000013.1	GCA_000763635_1_13	GCA_000763635_1_13	2836	3066	GCA_000763635_1_13_6	GCA_000763635_1_13_6	+	3068	.	PFAM:PF10734.8	Minor-Head-Virion-Protein	MWGKLITSVLMTVAGKVITALGLSFVSYVGLNEIQGFLLSHVQTQIGGIPSDAMNLAYIAGIGVCLNWIFGTFAFVV	hallmark_hmm	common_virus	NaN	.	0	3068	GCA_000763635.1|JQHF01000013.1@region_1_3068@tool_cenote_CDS_0006	.	unmatched_CDS	none	0	0	.
GCA_000763635.1|JQHF01000021.1@region_1_2331@tool_cenote	cenote	CDS	1	656	GCA_000763635.1	JQHF01000021.1	GCA_000763635.1|JQHF01000021.1	GCA_000763635.1_JQHF01000021.1	GCA_000763635.1|JQHF01000021.1	GCA_000763635_1_20	GCA_000763635_1_20	1	657	GCA_000763635_1_20_1	GCA_000763635_1_20_1	-	2331	.	PFAM:PF01548.16	Transposase	MYLGIDVSKLTIDCCLIADDQNHQKKFQNNKGGFEQLIKWLQSHKVSDKLHCVCEATGTYYEALAEYLYSRYTITVENPRKIKGYAIAELQRSKTDTQDAKLIAQYCQDRKHKLKAWQPPAKEQKQLQEIARYLDYLKQQRATEKAKQHEAPDYIKSHIQTTISNLTAQIQTVKKQLLQFYKDNPSYNDLRKRLKTITGIGEQATAVLLSTYKRHEFKN	common_virus_hmm	common_virus	NaN	.	0	2331	GCA_000763635.1|JQHF01000021.1@region_1_2331@tool_cenote_CDS_0001	.	unmatched_CDS	none	0	0	.
GCA_000763635.1|JQHF01000021.1@region_1_2331@tool_cenote	cenote	CDS	1068	2252	GCA_000763635.1	JQHF01000021.1	GCA_000763635.1|JQHF01000021.1	GCA_000763635.1_JQHF01000021.1	GCA_000763635.1|JQHF01000021.1	GCA_000763635_1_20	GCA_000763635_1_20	1069	2253	GCA_000763635_1_20_2	GCA_000763635_1_20_2	-	2331	.	PFAM:PF05707.11	Zonular-occludens-toxin-(Zot)	MLYLITGVPGSGKTLKMISDLMTRQDLKNRPLYLDGIPEVDEKIIPNLPIPEGETMQTWHKWAPTGAILVIDECQRVFRPRPSGSKVPDFVAELETHRHKGIDIFLLTQHPRLIDSNVRALVGHHCHIGKTNLGVRRMLEWERCADPTSSRDVSSAVKSVYTLDKKAFGVYKSAEEHTKIKTKLSRVVYIFPAVLALLITAGWYIYSSWNNRIDTMKAEQEKPKIEAQASSPEAVGAVAVPTANGTNAEGQYSPQMAIPEPPKPHLSEDDYKPRIEDRPETAPIYDGVNKSITAMPWPSACVKSDNGCNCYTDQGSKIAEISKKTCLSYIKDGLPFNPYKAKKTETAEVKETVQETERPQVLSMGGKSQQNLMYDGYVEKGNEMGAQNGAKTGS*	hallmark_hmm	common_virus	NaN	.	0	2331	GCA_000763635.1|JQHF01000021.1@region_1_2331@tool_cenote_CDS_0002	cloud	direct	high	1184	0.999	GCA_000763635.1_02034
GCA_000763635.1|JQHF01000029.1@region_1_1781@tool_cenote	cenote	CDS	22	291	GCA_000763635.1	JQHF01000029.1	GCA_000763635.1|JQHF01000029.1	GCA_000763635.1_JQHF01000029.1	GCA_000763635.1|JQHF01000029.1	GCA_000763635_1_26	GCA_000763635_1_26	23	292	GCA_000763635_1_26_1	GCA_000763635_1_26_1	+	1781	.	.	hypothetical protein	MTQETERRQGMFVIASFDRMFTRERKNQDGTFTKTHYVGLIIRSETETRLCEVRTKHPEKYEGYKPQQIVSMQVFPRAFKDNIYFSDEA*	.	hypothetical_protein	NaN	.	0	1781	GCA_000763635.1|JQHF01000029.1@region_1_1781@tool_cenote_CDS_0001	shell	direct	high	269	0.996	GCA_000763635.1_02069
GCA_000763635.1|JQHF01000029.1@region_1_1781@tool_cenote	cenote	CDS	378	599	GCA_000763635.1	JQHF01000029.1	GCA_000763635.1|JQHF01000029.1	GCA_000763635.1_JQHF01000029.1	GCA_000763635.1|JQHF01000029.1	GCA_000763635_1_26	GCA_000763635_1_26	379	600	GCA_000763635_1_26_2	GCA_000763635_1_26_2	+	1781	.	CDD:PHA00979	putative-major-coat-protein	MKFQNLKNKAKYALATVAVSAMSAPVMAEGILDTVKQEITGYKAEIIALGAIVVGISIAFAVIRIGKRGANAV*	hallmark_hmm	common_virus	NaN	.	0	1781	GCA_000763635.1|JQHF01000029.1@region_1_1781@tool_cenote_CDS_0002	cloud	direct	high	221	0.995	GCA_000763635.1_02070
GCA_000763635.1|JQHF01000029.1@region_1_1781@tool_cenote	cenote	CDS	609	911	GCA_000763635.1	JQHF01000029.1	GCA_000763635.1|JQHF01000029.1	GCA_000763635.1_JQHF01000029.1	GCA_000763635.1|JQHF01000029.1	GCA_000763635_1_26	GCA_000763635_1_26	610	912	GCA_000763635_1_26_3	GCA_000763635_1_26_3	+	1781	.	.	hypothetical protein	MGYQVGRICYETEQEAVNVLMTQVSPTIDKDGVLHHAVFDGKAWKYQEQTVKLTFPQCEFGEFAQAGRELGYQLVLLNASLFLIVIAVKVVGMISHKEEE*	.	hypothetical_protein	NaN	.	0	1781	GCA_000763635.1|JQHF01000029.1@region_1_1781@tool_cenote_CDS_0003	cloud	direct	high	302	0.997	GCA_000763635.1_02071
GCA_000763635.1|JQHF01000029.1@region_1_1781@tool_cenote	cenote	CDS	908	997	GCA_000763635.1	JQHF01000029.1	GCA_000763635.1|JQHF01000029.1	GCA_000763635.1_JQHF01000029.1	GCA_000763635.1|JQHF01000029.1	GCA_000763635_1_26	GCA_000763635_1_26	909	998	GCA_000763635_1_26_4	GCA_000763635_1_26_4	+	1781	.	.	hypothetical protein	MTPEIEFLIGMLPSFAVAICLYVLIRSFQ*	.	hypothetical_protein	NaN	.	0	1781	GCA_000763635.1|JQHF01000029.1@region_1_1781@tool_cenote_CDS_0004	cloud	ambiguous	low	5	0.056	GCA_000763635.1_02071
GCA_000763635.1|JQHF01000029.1@region_1_1781@tool_cenote	cenote	CDS	1058	1360	GCA_000763635.1	JQHF01000029.1	GCA_000763635.1|JQHF01000029.1	GCA_000763635.1_JQHF01000029.1	GCA_000763635.1|JQHF01000029.1	GCA_000763635_1_26	GCA_000763635_1_26	1059	1361	GCA_000763635_1_26_5	GCA_000763635_1_26_5	+	1781	.	.	hypothetical protein	MFNRIYNLVFIIIFALHVLGIISIPNEIRYLMIAFYLILLIYSLLNKKTNTKLNGDDDIFVMTTNPNKPSPSDPNMEKFMNDLNQSIEKKKLDKIKVKNE*	.	hypothetical_protein	NaN	.	0	1781	GCA_000763635.1|JQHF01000029.1@region_1_1781@tool_cenote_CDS_0005	.	unmatched_CDS	none	0	0	.
GCA_000763635.1|JQHF01000029.1@region_1_1781@tool_cenote	cenote	CDS	1353	1778	GCA_000763635.1	JQHF01000029.1	GCA_000763635.1|JQHF01000029.1	GCA_000763635.1_JQHF01000029.1	GCA_000763635.1|JQHF01000029.1	GCA_000763635_1_26	GCA_000763635_1_26	1354	1779	GCA_000763635_1_26_6	GCA_000763635_1_26_6	+	1781	.	pfam05616	Neisseria meningitidis TspB protein. This family consists of several Neisseria meningitidis TspB virulence factor proteins.	MNKLVIPLLVLFTSSFAIAGEINVNNSKSVTYTKQHTEHWDKKPWARSVSDNSYRKFQTEAMKARYEGYLSKQTVNATIEASVSRKTVLNGSFSLVKQGAKLVASRANVYVGGALLAYEAYQAVKSDFEFEGYEYNKESNEF	mmseqs_cdd	nonviral_gene	NaN	.	0	1781	GCA_000763635.1|JQHF01000029.1@region_1_1781@tool_cenote_CDS_0006	.	unmatched_CDS	none	0	0	.
GCA_000763635.1|JQHF01000033.1@region_1_3101@tool_cenote	cenote	CDS	142	1098	GCA_000763635.1	JQHF01000033.1	GCA_000763635.1|JQHF01000033.1	GCA_000763635.1_JQHF01000033.1	GCA_000763635.1|JQHF01000033.1	GCA_000763635_1_28	GCA_000763635_1_28	143	1099	GCA_000763635_1_28_1	GCA_000763635_1_28_1	-	3101	.	PFAM:PF01548.16	Transposase	MNVIGLDVSKDTIDATLITTKGSKDYIKISNNTEGFENLINWIKTKRIRKIAISMEATGIYYEQAAEYLSALYTIFVINPLKIKEYAKSQFSHTKTDKADSKLIAEFANRHLDKLTPFRPSENPTLYKLINLLQQLKEQQKETQNRLHTAKDIYIKSTHEAIIELLEEKIDQTSKRIEGMIKQKESLNIEYQNLQTIPAIGKETAVILLRHLTDKNFETANKFVAFAGLSPKIEQSGTSVNKKGRLSRYGHRQLKRALFMPALVAYRMNAFPQLVSNLEAAKKPKMIIIVALMRKLAKIAFYIHKTKKPFDKARHQTV*	common_virus_hmm	common_virus	NaN	.	0	3101	GCA_000763635.1|JQHF01000033.1@region_1_3101@tool_cenote_CDS_0001	cloud	direct	high	956	0.999	GCA_000763635.1_02074
GCA_000763635.1|JQHF01000033.1@region_1_3101@tool_cenote	cenote	CDS	1396	2565	GCA_000763635.1	JQHF01000033.1	GCA_000763635.1|JQHF01000033.1	GCA_000763635.1_JQHF01000033.1	GCA_000763635.1|JQHF01000033.1	GCA_000763635_1_28	GCA_000763635_1_28	1397	2566	GCA_000763635_1_28_2	GCA_000763635_1_28_2	-	3101	.	PFAM:PF05707.11	Zonular-occludens-toxin-(Zot)	MIILQTGVPGSGKTSSVVNMLMTDESYTHFTDKDGVKKKRPLFVNGIPELKIEHEELTDEQIKEKPFQDFLPYGSLVIIDEAQRLLGTRSAASKVPPFIEALALHRHHGLDIVLITQHPSFLDSFVRKLVQRHMHVSIKPVGRKLYEWNECVDQPDSSVNIARAIERTFVVPKKSFGMYKSAEVHTKPKRRIPKSLIFVALFLPLLIGFAIYTINGMSKRFNQEEKQQTAELTQTDTTDEATTSESSTPPQPTTTSSLKPDDFVPTLAEKPESKPIYDNVRQVKTFEYIAGCVEGGNSGCTCYSAQGTPLKEITKAMCKDYVKNGLPFNPYKDEQQTAQQQQTAPQTAYTPENGQVLTMGGKSPQNLMYDGYVEAGETTGFQNGAKVGS*	hallmark_hmm	common_virus	NaN	.	0	3101	GCA_000763635.1|JQHF01000033.1@region_1_3101@tool_cenote_CDS_0002	cloud	direct	high	1169	0.999	GCA_000763635.1_02075
GCA_000763635.1|JQHF01000033.1@region_1_3101@tool_cenote	cenote	CDS	2562	2855	GCA_000763635.1	JQHF01000033.1	GCA_000763635.1|JQHF01000033.1	GCA_000763635.1_JQHF01000033.1	GCA_000763635.1|JQHF01000033.1	GCA_000763635_1_28	GCA_000763635_1_28	2563	2856	GCA_000763635_1_28_3	GCA_000763635_1_28_3	-	3101	.	PFAM:PF10734.8	Minor-Head-Virion-Protein	MKAAFFAILQRLLTYIVAKIFIALGISFVTFTGFTVGLGFIKDYVKNQFNSMPSDILQIVMMAGFGHALGLIFGAFAFNVAMQSISKLSFIPGGKAK*	hallmark_hmm	common_virus	NaN	.	0	3101	GCA_000763635.1|JQHF01000033.1@region_1_3101@tool_cenote_CDS_0003	cloud	direct	high	293	0.997	GCA_000763635.1_02076
GCA_000763635.1|JQHF01000033.1@region_1_3101@tool_cenote	cenote	CDS	2859	3098	GCA_000763635.1	JQHF01000033.1	GCA_000763635.1|JQHF01000033.1	GCA_000763635.1_JQHF01000033.1	GCA_000763635.1|JQHF01000033.1	GCA_000763635_1_28	GCA_000763635_1_28	2860	3099	GCA_000763635_1_28_4	GCA_000763635_1_28_4	-	3101	.	PFAM:PF05616.12	attachment-protein	EEQEEPFKIPHTNNETTFSPDFFLPDNGVCPAPRTATYLGITMEFKYDMICNFAQMIRFLVIGIAAVAAAFIMFSSRKD*	common_virus_hmm	common_virus	NaN	.	0	3101	GCA_000763635.1|JQHF01000033.1@region_1_3101@tool_cenote_CDS_0004	.	unmatched_CDS	none	0	0	.