core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_000834845.1|CP009935.1@region_1310527_1331430@tool_cenote	cenote	CDS	1310526	1311764	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C88	1	1239	GCA_000834845_1_1_1182	GCA_000834845_1_1_1182	+	4501786	.	PRK10885	multifunctional CCA addition/repair protein. 	MNIYLVGGAVRDSLLNLPVTEQDWVVVGATPEQLLKLGYQQVGKDFPVFLHPVSHEEYALARTERKSGQGYTGFTCYAAPDVTLEDDLLRRDLTVNAIARSADGEFIDPYHGKQDLENRVLRHVSDAFGEDPLRVLRVARFAARFAYLGFTIAPETMSLMSNMAQSGELSALTPERVWKETEKALKTQSPHVYFQVLRDCGALAVLFPEIERLFGVPAPEKWHPEIDTGIHTLMTLAIAAQLSPEVDIRFAALCHDLGKGLTPKEHWPHHHGHGPAGVKLVEQLCQRLRIPNPVRDLAKLVAEYHDLIHTVNKLRPETLLKLFNAIDVWRKPERLEQMIMTSEADARGRTGFENNPYPQGDYLRAAFQIANGVSIQEVVASGLQGLAIRDELQRRRQQALAEWKQTQETASI*	mmseqs_cdd	common_virus	C88	20904	1310526	1331430	GCA_000834845.1|CP009935.1@region_1310527_1331430@tool_cenote_CDS_0001	persistent	direct	high	1238	0.999	GCA_000834845.1_01288
GCA_000834845.1|CP009935.1@region_1310527_1331430@tool_cenote	cenote	CDS	1312000	1312818	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C88	1475	2293	GCA_000834845_1_1_1183	GCA_000834845_1_1_1183	-	4501786	.	PRK00281	undecaprenyl-diphosphate phosphatase. 	MTDMYSLFVAFILGVVEGLTEFLPVSSTGHMIIVGELLGFTGDKAKTFEVIIQLGSILAVVVVFWRRLFGLIGIHFGAVPHEGKTNGHLTLGHILLAMIPAVILGLAFHDVIKALFDPKSVMYALVAGGVLLLAAEWLKPKNPKAVGLDDITYRQAFAIGCFQCLALWPGFSRSGATISGGMLVGVNRYAASEFSFILAVPMMIGASGLDLYKSLHFLTLGDLPMFAVGFITAFIVALIAIKTFLSLIKRISFVPFAIYRFIVAAVVYWVFM*	mmseqs_cdd	nonviral_gene	C88	20904	1310526	1331430	GCA_000834845.1|CP009935.1@region_1310527_1331430@tool_cenote_CDS_0002	persistent	direct	high	818	0.999	GCA_000834845.1_01289
GCA_000834845.1|CP009935.1@region_1310527_1331430@tool_cenote	cenote	CDS	1313092	1313451	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C88	2567	2926	GCA_000834845_1_1_1184	GCA_000834845_1_1_1184	-	4501786	.	PRK11593	bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase. 	MDIVFIEELSVITTIGVYDWEQTIQQKLVFDIEMGWDNRKAAGSDDVNDCLSYADISEAVIQHVGSQRFALVERVAEEVAELLLRRFNSPWVRIKVSKPGAVAQAKNVGVIIERGQRLS*	mmseqs_cdd	nonviral_gene	C88	20904	1310526	1331430	GCA_000834845.1|CP009935.1@region_1310527_1331430@tool_cenote_CDS_0003	persistent	direct	high	359	0.997	GCA_000834845.1_01290
GCA_000834845.1|CP009935.1@region_1310527_1331430@tool_cenote	cenote	CDS	1313559	1314209	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C88	3034	3684	GCA_000834845_1_1_1185	GCA_000834845_1_1_1185	+	4501786	.	PRK00220	glycerol-3-phosphate 1-O-acyltransferase PlsY. 	MSAIALGMIIFAYLCGSISSAILVCRVARLPDPRTHGSGNPGATNVLRIGGRTAAVAVLLFDILKGMLPVWIAYLLHIPPLYLGLTAIAACLGHIYPVFFHFKGGKGVATAFGAIAPIGWDLTGLMTGTWLLTVLLSGYSSLGAIVSALIAPFYVWWFKPQFTFPVAMLSCLILMRHHDNIQRLWRGKEGKIWDKLRKKKQKTPAEEAAELEEKED*	mmseqs_cdd	nonviral_gene	C88	20904	1310526	1331430	GCA_000834845.1|CP009935.1@region_1310527_1331430@tool_cenote_CDS_0004	persistent	direct	high	650	0.998	GCA_000834845.1_01291
GCA_000834845.1|CP009935.1@region_1310527_1331430@tool_cenote	cenote	CDS	1314400	1315413	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C88	3875	4888	GCA_000834845_1_1_1186	GCA_000834845_1_1_1186	-	4501786	.	3ZEU_E	PUTATIVE M22 PEPTIDASE YEAZ, PROBABLE	MRVLGIETSCDETGIAVYDDKAGLLANQLYSQVKLHADYGGVVPELASRDHVRKTVPLIQAALKEANLSAKDIDAVAYTAGPGLVGALLVGATIGRALAFAWGVPAVPVHHMEGHLLAPMLEENAPEFPFVALLVSGGHTQLISVTGIGEYLLLGESVDDAAGEAFDKTAKLLGLDYPGGPMLSRMAQQGTVGRFTFPRPMTDRPGLDFSFSGLKTFAANTIRANGDDDQTRADIARAFEDAVVDTLAIKSKRALDQTGFKRLVIAGGVSANQTLRLKLADMMQKRGGEVFYARPEFCTDNGAMIAYAGMVRLRSNLNSELSVSVRPRWPLSELPKV*	hhsuite_tools	nonviral_gene	C88	20904	1310526	1331430	GCA_000834845.1|CP009935.1@region_1310527_1331430@tool_cenote_CDS_0005	persistent	direct	high	1013	0.999	GCA_000834845.1_01292
GCA_000834845.1|CP009935.1@region_1310527_1331430@tool_cenote	cenote	CDS	1315819	1316034	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C88	5294	5509	GCA_000834845_1_1_1187	GCA_000834845_1_1_1187	+	4501786	.	COG0828	Ribosomal protein S21 [Translation, ribosomal structure and biogenesis]. 	MPVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY*	mmseqs_cdd	nonviral_gene	C88	20904	1310526	1331430	GCA_000834845.1|CP009935.1@region_1310527_1331430@tool_cenote_CDS_0006	persistent	direct	high	215	0.995	GCA_000834845.1_01293
GCA_000834845.1|CP009935.1@region_1310527_1331430@tool_cenote	cenote	CDS	1316170	1317918	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C88	5645	7393	GCA_000834845_1_1_1188	GCA_000834845_1_1_1188	+	4501786	.	PDB:5IKN_F	DNA-polymerase	MAGRIPRVFINDLLARTDIIDLIDARVKLKKQGKNYHACCPFHHEKTPSFTVNGEKQFYHCFGCGAHGNAVDFLMNYDRLEFVESIEELATMHGLEVPYEAGSGTTQIERHQRQSLYQLMESLSAFYQQSLKGQNAKQAREYLKHRGLSEEIIQHFAIGFAPPGWDNALKRFGRDGESRTALNDAGMLVTNDTGRTYDRFRERVMFPIRDKRGRVIAFGGRILGDGVPKYLNSPETEIFHKGRQLYGLYEAQVNHPNPTRLLVVEGYMDVVALAQFGIDYAVASLGTATTAEHIQLLFRATDNVICCYDGDRAGRDAAWRALETALPYLNDGRQLRFMFLPDGEDPDTLVRKEGKDAFEQRMEAAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLISQVPGEALRLYLRQQLGNKLGLLDDSQLDKLMPKQIDNANTYQPPQLKRTTMRILIGLLVQNPQLATLIPSLQGLEQAKLAGLPLFIELVETCLAQPGLTTGQLLELYRDNKFSQQLETLATWNHMIVEDMVEPTFVDTLASLYDSILEQRQETLIARDRTHGLNAEERKELWSLNLALARKK*	common_virus_hmm	common_virus	C88	20904	1310526	1331430	GCA_000834845.1|CP009935.1@region_1310527_1331430@tool_cenote_CDS_0007	persistent	direct	high	1748	0.999	GCA_000834845.1_01294
GCA_000834845.1|CP009935.1@region_1310527_1331430@tool_cenote	cenote	CDS	1318076	1319914	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C88	7551	9389	GCA_000834845_1_1_1189	GCA_000834845_1_1_1189	+	4501786	.	PDB:4XLN_L	DNA-directed-RNA-polymerase-subunit	MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVLEEAPDADDLMLAENTTDTDDDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAGESRLSDLITGFVDPNAEEDIAPTATHVGSELSTEEMDDEDEDEDEDDDAEDDNSIDPELARQKFSDLREQYENARMEIKKNGRNHANAAAEILKLSEVFKQFRLVPKQFDYLVNNMRAMMDRVRTQERIIMKLCVEQCKMPKKNFVTLFSSNETSDTWFNAAVAMGKPWSEKLKDVSEDVQRSLQKLRQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSENLRSATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD*	common_virus_hmm	common_virus	C88	20904	1310526	1331430	GCA_000834845.1|CP009935.1@region_1310527_1331430@tool_cenote_CDS_0008	persistent	direct	high	1838	0.999	GCA_000834845.1_01295
GCA_000834845.1|CP009935.1@region_1310527_1331430@tool_cenote	cenote	CDS	1320432	1320770	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C88	9907	10245	GCA_000834845_1_1_1190	GCA_000834845_1_1_1190	-	4501786	.	PFAM:PF03592.15	Terminase-small-subunit	MGRTTIHDIATFGNYQIGENEEGQPVFQASWKFKDSKDIKPEHLAAVAELSTGKDGLKIKLHDPKAAIKQLAGMCGWEAPKKAELTGANGGPIQTSNLTPDEAAEAYRKMMG*	hallmark_hmm	common_virus	C88	20904	1310526	1331430	GCA_000834845.1|CP009935.1@region_1310527_1331430@tool_cenote_CDS_0009	shell	direct	high	338	0.997	GCA_000834845.1_01297
GCA_000834845.1|CP009935.1@region_1310527_1331430@tool_cenote	cenote	CDS	1320748	1321038	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C88	10223	10513	GCA_000834845_1_1_1191	GCA_000834845_1_1_1191	-	4501786	.	CDD:COG3728	Small-Terminase	MTLTEEQKALFDALTQLQRRFVTALLEGANQTEAYRRAGGKAKGDGERSKASQLVTNSNVQAFLQSVQHETVNAAIMTYTEALERLTLIDGAHDNS*	hallmark_hmm	common_virus	C88	20904	1310526	1331430	GCA_000834845.1|CP009935.1@region_1310527_1331430@tool_cenote_CDS_0010	shell	direct	high	290	0.997	GCA_000834845.1_01298
GCA_000834845.1|CP009935.1@region_1310527_1331430@tool_cenote	cenote	CDS	1321055	1321510	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C88	10530	10985	GCA_000834845_1_1_1192	GCA_000834845_1_1_1192	-	4501786	.	NF038335	YrhA family protein. Members of this family include YrhA from Escherichia coli, which is found as a pseudogene in the K-12 model strain, and YPO0640 from Yersinia pestis. Only full-length forms are used in the seed alignment for this HMM. The function of this protein family is unknown.	MANLEKAVNEFTRISKSMGYNINPPYTGKLETYDFGRDISPEQPDFWKQYGSFLRISNGSFADGCVFYGMSGGEDDAGLIEFNNALNIPDFKDETMTGLIVIGGNNTDTFYYDPRTGKWEACDRIGTDRVWESCDSLAELIETQIKMLENG*	mmseqs_cdd	nonviral_gene	C88	20904	1310526	1331430	GCA_000834845.1|CP009935.1@region_1310527_1331430@tool_cenote_CDS_0011	persistent	direct	high	455	0.998	GCA_000834845.1_01299
GCA_000834845.1|CP009935.1@region_1310527_1331430@tool_cenote	cenote	CDS	1321537	1322007	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C88	11012	11482	GCA_000834845_1_1_1193	GCA_000834845_1_1_1193	-	4501786	.	NF038335	YrhA family protein. Members of this family include YrhA from Escherichia coli, which is found as a pseudogene in the K-12 model strain, and YPO0640 from Yersinia pestis. Only full-length forms are used in the seed alignment for this HMM. The function of this protein family is unknown.	MTDIEKAVTTFQAYRAAIGYPKIPPYEGEVIEYDFGRKIESNQPDFWTQYHEFLRLSDGLAADGVYFYGIACEGKLIGNRLIDNNDALRDGEMYDESMDGLIAIGSSNSDIFVYDTNTHKWESRDRIAIDDINESYDTLAELIDSQLQRINIGDAF*	mmseqs_cdd	nonviral_gene	C88	20904	1310526	1331430	GCA_000834845.1|CP009935.1@region_1310527_1331430@tool_cenote_CDS_0012	persistent	direct	high	470	0.998	GCA_000834845.1_01300
GCA_000834845.1|CP009935.1@region_1310527_1331430@tool_cenote	cenote	CDS	1322016	1323398	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C88	11491	12873	GCA_000834845_1_1_1194	GCA_000834845_1_1_1194	-	4501786	.	.	hypothetical protein	MSFNLPGMYLYYLSRDNLAPEEYERIISPHAAWARICREYEFDDSHNTSRYLINMREREQRSSPDQPRPGGIREKEKLEKLVFSGDVVMLSDMYGPARLFYINGEGQLMSTDPHAFRFEGAAKIIKAFDDSVKCRNYQRTGGKPRSTQTRRLKSTTNTIPDRSMVTRASDESGRVLSAKWQSVTDSAKTLWEATPFTHDKATTEAARGRIADGAVGTLEGLGTLMGPSAQEYMAGAFNPEQAAINKVRQQNQQAAGKAIYDNTKGAVTDAYQRNGLAGAAAMVVTASVAELAGTKGLGTVEKVGTLGDVAKLGKAVELEKLEGYLGTYKGQKVLLQNVDVVKMDYVRRSTADRNLLRKEFDNGVRKKFLKDIANNPEVVKRLDAFDRSVLAKGVVPDGYQVHHKLPLDDSGNNNFDNLVLISTRPEHAAFTTTQKHITKNLTPTGTNIVLWPKPQGIIYP*	.	hypothetical_protein	C88	20904	1310526	1331430	GCA_000834845.1|CP009935.1@region_1310527_1331430@tool_cenote_CDS_0013	persistent	direct	high	1382	0.999	GCA_000834845.1_01301
GCA_000834845.1|CP009935.1@region_1310527_1331430@tool_cenote	cenote	CDS	1323531	1323761	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C88	13006	13236	GCA_000834845_1_1_1195	GCA_000834845_1_1_1195	-	4501786	.	.	hypothetical protein	MDTLTTATPSVHRKYFRHILGACGSCYFERQAGKFILGEEGDQFFSAYVREDSAYRIERMESESPLGYQTSGAIPV*	.	hypothetical_protein	C88	20904	1310526	1331430	GCA_000834845.1|CP009935.1@region_1310527_1331430@tool_cenote_CDS_0014	persistent	direct	high	230	0.996	GCA_000834845.1_01302
GCA_000834845.1|CP009935.1@region_1310527_1331430@tool_cenote	cenote	CDS	1324317	1324475	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C88	13792	13950	GCA_000834845_1_1_1196	GCA_000834845_1_1_1196	+	4501786	.	.	hypothetical protein	MTKKTAHSQITKTQIYRAVASSTAIETGVSVQKIEQQLKQNLAQAKAVGLAR*	.	hypothetical_protein	C88	20904	1310526	1331430	GCA_000834845.1|CP009935.1@region_1310527_1331430@tool_cenote_CDS_0015	persistent	direct	high	158	0.994	GCA_000834845.1_01303
GCA_000834845.1|CP009935.1@region_1310527_1331430@tool_cenote	cenote	CDS	1324472	1324834	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C88	13947	14309	GCA_000834845_1_1_1197	GCA_000834845_1_1_1197	-	4501786	.	COG2184	Fido, protein-threonine AMPylation domain [Signal transduction mechanisms]. 	MAGECVHQWAGRLRNANLTKDGFQKQFLARSGELKSLARPELVSYLAECHVEFILIHPFREGNGRLSRLLCDVLAVLAGKGLLDYSLWDEHKAFYFKAIQAGVSGNYSPMMRLVSDILPD*	mmseqs_cdd	nonviral_gene	C88	20904	1310526	1331430	GCA_000834845.1|CP009935.1@region_1310527_1331430@tool_cenote_CDS_0016	persistent	direct	high	362	0.997	GCA_000834845.1_01304
GCA_000834845.1|CP009935.1@region_1310527_1331430@tool_cenote	cenote	CDS	1324780	1325043	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C88	14255	14518	GCA_000834845_1_1_1198	GCA_000834845_1_1_1198	-	4501786	.	COG2184	Fido, protein-threonine AMPylation domain [Signal transduction mechanisms]. 	MSKYELNSAEERYQPDSGDTVLANKLGIIDEYEMEALESGLLLMLYEQLFIEGPLPTTLAFNSIREWHRQWLGNVYTSGQGDYVTLT*	mmseqs_cdd	nonviral_gene	C88	20904	1310526	1331430	GCA_000834845.1|CP009935.1@region_1310527_1331430@tool_cenote_CDS_0017	persistent	direct	high	263	0.996	GCA_000834845.1_01305
GCA_000834845.1|CP009935.1@region_1310527_1331430@tool_cenote	cenote	CDS	1325434	1326366	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C88	14909	15841	GCA_000834845_1_1_1199	GCA_000834845_1_1_1199	-	4501786	.	cd08472	The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 3. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase.  The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	MDKFSAMTTFAKVVETGSFTRAADVLALPKARVSQRVSDLERHLGVRLLNRTTRSLNLTEDGQAYFAKCQVILQEIDELEGALKGGSVEPRGKLRVEALVSVARWVIAPSLHEFQARYPNISVRLGGSDRISHLLDNGIDCAIRGGHLEDSSQIARHVCDVHLGLYAAPAYLEAAGAVTHPQELSVHRRISWFTGQRNPFIWSLQSASDAFELPAEEGLLFDDPDVALASCMAGSGICPGAPFAVESWVRAGALVPVLPHWRFKARPIHIIYPSNRHLSARVRCFVDWSLEMMQANTSMRITPWELAERI*	mmseqs_cdd	nonviral_gene	C88	20904	1310526	1331430	GCA_000834845.1|CP009935.1@region_1310527_1331430@tool_cenote_CDS_0018	persistent	direct	high	932	0.999	GCA_000834845.1_01306
GCA_000834845.1|CP009935.1@region_1310527_1331430@tool_cenote	cenote	CDS	1326658	1327680	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C88	16133	17155	GCA_000834845_1_1_1200	GCA_000834845_1_1_1200	+	4501786	.	PDB:1BCO_A	Mu-Transposase	MVTFETVMEIKILHKQGMSSRAIARELGISRNTVKRYLQAKSEPPKYTPRPAVASLLDEYRDYIRQRIADAHPYKIPATVIAREIRDQGYRGGMTILRAFIRSLSVPQEQEPAVRFETEPGRQMQVDWGTMRNGRSPLHVFVAVLGYSRMLYIEFTDNMRYDTLETCHRNAFRFFGGVPREVLYDNMKTVVLQRDAYQTGQHRFHPSLWQFGKEMGFSPRLCRPFRAQTKGKVERMVQYTRNSFYIPLMTRLRPMGITVDVETANRHGLRWLHDVANQRKHETIQARPCDRWLEEQQSMLALPPEKKEYDVHLDENLVNFDKHPLHHPLSIYDSFCRGVA*	common_virus_hmm	common_virus	C88	20904	1310526	1331430	GCA_000834845.1|CP009935.1@region_1310527_1331430@tool_cenote_CDS_0019	persistent	direct	high	1022	0.999	GCA_000834845.1_01307
GCA_000834845.1|CP009935.1@region_1310527_1331430@tool_cenote	cenote	CDS	1327680	1328459	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C88	17155	17934	GCA_000834845_1_1_1201	GCA_000834845_1_1_1201	+	4501786	.	PDB:4M4W_K	Replicative-helicase	MMELQHQRLMALAGQLQLESLISAAPALSQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFTFATGAPQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIAMGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPFSQEEAKLFFQVIAKRYEKSAMILTSNLPFGQWDQTFAGDAALTSAMLDRILHHSHVVQIKGESYRLRQKRKAGVIAEANPE*	rep_hall_hmm	common_virus	C88	20904	1310526	1331430	GCA_000834845.1|CP009935.1@region_1310527_1331430@tool_cenote_CDS_0020	persistent	direct	high	779	0.999	GCA_000834845.1_01308
GCA_000834845.1|CP009935.1@region_1310527_1331430@tool_cenote	cenote	CDS	1328475	1328957	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C88	17950	18432	GCA_000834845_1_1_1202	GCA_000834845_1_1_1202	+	4501786	.	PDB:1Z19_B	Integrase	MGRWWRYKWITFHPSLTLVKTTGKKIWRFHYQLPNSSKRTMVSLGAYPALSLADAREVRAEKLAMLVRGVDPQARADEEAEKLQIAEESIFVNVARKWFELKESHVSAAHAKDIWRSIEKDILPSIESVPIQELKARTLIQVLEPIKARGALETDLLPIE*	common_virus_hmm	common_virus	C88	20904	1310526	1331430	GCA_000834845.1|CP009935.1@region_1310527_1331430@tool_cenote_CDS_0021	persistent	direct	high	482	0.998	GCA_000834845.1_01309
GCA_000834845.1|CP009935.1@region_1310527_1331430@tool_cenote	cenote	CDS	1329006	1329269	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C88	18481	18744	GCA_000834845_1_1_1203	GCA_000834845_1_1_1203	+	4501786	.	pfam01527	Transposase. Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.	MKKRFSDEQIINILREAEAGVSARELCRKHAISEASYYNWKAKYGGMEASDIKKIKDLEDENRRLKQMFANLSLECRALKDVIEKKL*	mmseqs_cdd	nonviral_gene	C88	20904	1310526	1331430	GCA_000834845.1|CP009935.1@region_1310527_1331430@tool_cenote_CDS_0022	persistent	direct	high	263	0.996	GCA_000834845.1_01310
GCA_000834845.1|CP009935.1@region_1310527_1331430@tool_cenote	cenote	CDS	1329700	1329951	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C88	19175	19426	GCA_000834845_1_1_1204	GCA_000834845_1_1_1204	-	4501786	.	.	hypothetical protein	MSKNTKQTSGKVASIAAKTLNDPNSSAIQRSLAGSALSQRGTPNQTSGEMEHKASAALDNPRSSALTKQLAASVLAQANKDRK*	.	hypothetical_protein	C88	20904	1310526	1331430	GCA_000834845.1|CP009935.1@region_1310527_1331430@tool_cenote_CDS_0023	persistent	direct	high	251	0.996	GCA_000834845.1_01312
GCA_000834845.1|CP009935.1@region_1310527_1331430@tool_cenote	cenote	CDS	1330662	1331429	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C88	20137	20904	GCA_000834845_1_1_1205	GCA_000834845_1_1_1205	+	4501786	.	PRK10673	esterase. 	MKLNFRLQNAPSPTSALPIILIHGLFGNLDNLGVLARDLQQHHNVIQVDLRNHGLSPRAPQMDYPVIAQDVLALMDELAITQAIIIGHSMGGKVAMAMTALAPNRVEKLVAIDIAPVNYQVRRHDTIFAALNAVSAAGVTQRNEAAQLMRTLIKEEGVIQFLLKSFQGGEWRFNVPALWDQYENIIGWQPIPPWPHPILFIRGELSPYIQDSYRDDIARQFPQARAHVVAGTGHWVHAEKPDSVLRAIHRFLDAA*	mmseqs_cdd	nonviral_gene	C88	20904	1310526	1331430	GCA_000834845.1|CP009935.1@region_1310527_1331430@tool_cenote_CDS_0024	persistent	direct	high	767	0.999	GCA_000834845.1_01313
GCA_000834845.1|CP009935.1@region_2509237_2526498@tool_cenote	cenote	CDS	2509236	2510045	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C176	1	810	GCA_000834845_1_1_2285	GCA_000834845_1_1_2285	+	4501786	.	COG1349	DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, Carbohydrate transport and metabolism]. 	MIPEQRRDFIYRYVHEQNVASFMDLAELMNVSHMTVRRDIQILEAEGKVVAINGGVKLNNLLKLELAYSEKASLNHELKQNIGVLAAMLIEPGQTLYLDAGTTLFEVAKAVAASNCFNLTVVTNDFTISGYLMDMPHISLYHTGGLVDRRNRSCLGNSAANFLNTINIDVAFLSSSSWDIARGMSTPSEGKAMVKAAVMRASRRNILVSDSSKFGKYGMFPICNLQALTDIISDGNLPLVAQKQIKESGVKLHLVNKEVRAPCSNSQPI*	mmseqs_cdd	nonviral_gene	C176	17262	2509236	2526498	GCA_000834845.1|CP009935.1@region_2509237_2526498@tool_cenote_CDS_0001	persistent	direct	high	809	0.999	GCA_000834845.1_02504
GCA_000834845.1|CP009935.1@region_2509237_2526498@tool_cenote	cenote	CDS	2510021	2510815	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C176	786	1580	GCA_000834845_1_1_2286	GCA_000834845_1_1_2286	+	4501786	.	COG3622	Hydroxypyruvate isomerase [Carbohydrate transport and metabolism]. 	MLKFAANLTWLFTEVPFLQRFALAAKAGFPAVECLFPYQEQIADVQQAQKASGIPVVLINAPAGEWENGQRGLASLPDAGEPFRHSVRLAREYAVALGCKQIHIMAGNREESITFDEQYALLIERLRYAADYLMADNIRVLIEPLNNDNMPGYFISSFPLAEKIIHQCERKNIFLQFDVYHCQKIHGNLWANLQHYWPLISHIQIASVPERHEPNKGEVNYPWLFQQLVIKNYPGWIGCEYQPENETFSGLGWLGKNKNIKAFS*	mmseqs_cdd	nonviral_gene	C176	17262	2509236	2526498	GCA_000834845.1|CP009935.1@region_2509237_2526498@tool_cenote_CDS_0002	persistent	direct	high	794	0.999	GCA_000834845.1_02505
GCA_000834845.1|CP009935.1@region_2509237_2526498@tool_cenote	cenote	CDS	2511447	2511737	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C176	2212	2502	GCA_000834845_1_1_2287	GCA_000834845_1_1_2287	+	4501786	.	PFAM:PF16082.4	holin	MYEQSQFPYWWAGSLALFSLLSLQDFIFILGTIISVIFTIKTYYVNLREKAAIIKEEQRRTEILQNFLQNKTIENIPAAIVVCHKAASQQAIIKRR*	phrogs_hmm	hypothetical_protein	C176	17262	2509236	2526498	GCA_000834845.1|CP009935.1@region_2509237_2526498@tool_cenote_CDS_0003	persistent	direct	high	290	0.997	GCA_000834845.1_02506
GCA_000834845.1|CP009935.1@region_2509237_2526498@tool_cenote	cenote	CDS	2511783	2512400	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C176	2548	3165	GCA_000834845_1_1_2288	GCA_000834845_1_1_2288	+	4501786	.	.	hypothetical protein	MTFIDVRRRSFLSGEIMNAAQIRQLAAAALRGKTDAEDRIYLTEAWPITTYPAILLQTPLEVKESIGRNAPQFKTITTLRISGHIQLSEGENPVTVAASALERLCEQIQRAVINSYELTRQIQQFAKVRTTMGIYTALGSDTAARSAATRSEPSVAEVKVELDLEYYQGPEDFFPLETPQLAGIDVTINMPDGAPEPLIAITLSE*	.	hypothetical_protein	C176	17262	2509236	2526498	GCA_000834845.1|CP009935.1@region_2509237_2526498@tool_cenote_CDS_0004	persistent	direct	high	617	0.998	GCA_000834845.1_02507
GCA_000834845.1|CP009935.1@region_2509237_2526498@tool_cenote	cenote	CDS	2512405	2512599	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C176	3170	3364	GCA_000834845_1_1_2289	GCA_000834845_1_1_2289	+	4501786	.	pfam10948	Protein of unknown function (DUF2635). This is a family of phage proteins with unknown function.	MFVKPMAGRAVRDPVKGTFLPEFGTEVPDNAFWRRRLQDGDVVQIAAKPAASVFEELTTESTKL*	mmseqs_cdd	nonviral_gene	C176	17262	2509236	2526498	GCA_000834845.1|CP009935.1@region_2509237_2526498@tool_cenote_CDS_0005	persistent	direct	high	194	0.995	GCA_000834845.1_02508
GCA_000834845.1|CP009935.1@region_2509237_2526498@tool_cenote	cenote	CDS	2512596	2514104	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C176	3361	4869	GCA_000834845_1_1_2290	GCA_000834845_1_1_2290	+	4501786	.	PDB:5LI4_E	tail-component	MTIPFTNIPSNLRTPLFFAEFDNSQANTASTTQRTLIIGQTRAGSTLPANIPLLVSSTATVAGLSGAGSMLHGQMAAYLANDTAGEIYLLPLSDADSMVAAIGKITINTAASETGVISLYIGGIRVQTTVVATDSVSTIAAALAAAIENQPELPVTVVHTGDMVSEGAVVVLEAKNKGAHGNNIDLRLNYLGNAGGEITPESLVLMITPMAGGAGAPELADGLANLQDRTFDFIINPYTDTASLDAIKDFLSDSTGRWSYRQQLYGHSFAAQSGTYGQLTAAGELRNDQHASLLGIHNSPTPAHIWSAAYVGAIAQSLRNDPGRPLQTLAIRGVLAPPLSSRFTLTERNNLLHSGISTVTVADDSTVQVENIITTYQKNKYGAEDDSYLQIETLFLLMFVTRFLRTQVTSKFARMKLAADGTRFAPGSAIITPNVIRAELIAQYQTLEFNGYVQDAKGFARGLIVEKSASNPNRVDVLWTGVLINQLRIFAVLNQFRLQAAV*	hallmark_hmm	common_virus	C176	17262	2509236	2526498	GCA_000834845.1|CP009935.1@region_2509237_2526498@tool_cenote_CDS_0006	persistent	direct	high	1508	0.999	GCA_000834845.1_02509
GCA_000834845.1|CP009935.1@region_2509237_2526498@tool_cenote	cenote	CDS	2514126	2514494	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C176	4891	5259	GCA_000834845_1_1_2291	GCA_000834845_1_1_2291	+	4501786	.	PFAM:PF10618.8	Tail-tube-protein	MSDTSNRLAGTAYVTVDGITVMVAGSFKYSPSRVKRETVMGMDGVHGYKETINAPYIVCQIRDSGGISVSDFNDQTHVNIVCELANGKTIIGSAMWSVNTQEVDSTEGTLEVRWEGGSVTEN*	hallmark_hmm	common_virus	C176	17262	2509236	2526498	GCA_000834845.1|CP009935.1@region_2509237_2526498@tool_cenote_CDS_0007	persistent	direct	high	368	0.997	GCA_000834845.1_02510
GCA_000834845.1|CP009935.1@region_2509237_2526498@tool_cenote	cenote	CDS	2514496	2514795	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C176	5261	5560	GCA_000834845_1_1_2292	GCA_000834845_1_1_2292	+	4501786	.	PFAM:PF10109.8	tail-protein	MAELERSKTISLVKPIAHDASKTTYEVVELSEPTLLQVQQFYDEQTKSGSLSGMGLLIALVSGVPREAIKKMAFTDYKACEVYMMRFLAYSPTGDDGAK*	phrogs_hmm	hypothetical_protein	C176	17262	2509236	2526498	GCA_000834845.1|CP009935.1@region_2509237_2526498@tool_cenote_CDS_0008	persistent	direct	high	299	0.997	GCA_000834845.1_02511
GCA_000834845.1|CP009935.1@region_2509237_2526498@tool_cenote	cenote	CDS	2514916	2516409	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C176	5681	7174	GCA_000834845_1_1_2293	GCA_000834845_1_1_2293	+	4501786	.	PFAM:PF01832.19	tail-tape-measure-protein-	MTEIFDFDLAIDAQVTESVSQMNKAIKALVPQFNELRKSVEAINHVIPLFIMRIEGFHNEYGNISGGTRTSSDNSLMTSIANIANSYITGGKFNLIYTIGSEFASAVSQAASEARTVNKVTQNAGAPIDQFSQLYGAMQIRGTDQEAAIKSTERLYNTFNNILWRRDEQGWNLLQDYGLDIASNKNGTVDAPTTLTNMAKEFPQMAPQDQHQLIHILRMDSNAIELLREGGQLTDLLAKSRQYGLTIDPQLNARLTELNIRTNELSMAWDGLKGKASNKLYDVLFSDGTIADGIGGLTDMITYGPDNFSIMRTLGVTQGIDTDKMRRGYNDADFYQQLNFYEKAMLSAGLMTDGFRKKYQGNNEEKNATSAVNAVAINTVAINSDIPEFNLGKDLFNFGAETENTWKNNWLTDIHAEEPSSDFGYNDIDINPVNLSLISPESAGDFNGNAIADVIATAMQNNRVQIELTLIDSRTGETSLIQAQGGARIAHAMELGH*	hallmark_hmm	common_virus	C176	17262	2509236	2526498	GCA_000834845.1|CP009935.1@region_2509237_2526498@tool_cenote_CDS_0009	persistent	direct	high	1493	0.999	GCA_000834845.1_02512
GCA_000834845.1|CP009935.1@region_2509237_2526498@tool_cenote	cenote	CDS	2516676	2518082	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C176	7441	8847	GCA_000834845_1_1_2294	GCA_000834845_1_1_2294	+	4501786	.	COG4228	Mu-like prophage DNA circulation protein  [Mobilome: prophages, transposons]. 	MSLIGNTLSALLGGSDDSWQWSEHLHRASFRGVPFVVVSGQGTFGRRQVTHSYPYRDTSYIEDLGRNTRKIVLKGILIQNSQIYTAPDVMTQRDSLIAACEMSGPGTLVHPTLGEMTVSISEAGLLIDDSFSSERVFSFTLTAIESGLRAFAITGSAEMGASIQSSWLGLSAKAVAGFISTVKGEMRSATQAIKTLKNTAAFWRRMVTGTANEASNLGNALRSTFGRNRYGRYNHGTVGGSSTGATTTVSQQNDTADLSTLVAQRMALVVEGRAALDAALDELLAASSIESHADSVLAVVDALLATGISTRDIIRIMETLALAHDDTFRANDSDRAVADASHHLMATLCTGAMIQVAAQYQPESYDDAVAVLGRVCLVIDNTALVAADRGNDETYRALVQMRESIVTVLQQAGANLSRVGEVSFNRSLPALMLANRLYQDALRGDSLVKMANPIHPAFMPIRFKALNL*	mmseqs_cdd	nonviral_gene	C176	17262	2509236	2526498	GCA_000834845.1|CP009935.1@region_2509237_2526498@tool_cenote_CDS_0010	persistent	direct	high	1406	0.999	GCA_000834845.1_02514
GCA_000834845.1|CP009935.1@region_2509237_2526498@tool_cenote	cenote	CDS	2518079	2519134	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C176	8844	9899	GCA_000834845_1_1_2295	GCA_000834845_1_1_2295	+	4501786	.	PDB:1WRU_A	Tail-protein	MNDDLTLEVGGRAITGWSKVKVTRSIEKLPSSFELSLMDRYPASGGQQWVNPGDPCVVKLGNDSVLNGYIDSWDNAITATTHVVSAMGRGKCQDLVDCSAKWPNSVISQSTVLQIAQKLAEPYGITVTSDITDMTIVPTFTLNWGETAQTVIENVTRWAALLYYDQLDGNLLLTRVGNRKAASGVAQGVNILSASLHTDINKRFVDYTGVVLSTNAVARRSPSGGNNTSVLVRVQDTQLAALLPDRYRNRIVIVENTMDSPQLVETSIDWEINRSVGRAKVLTVQVDSWRDREQQLWEINSLIPIDIPALGLRDELWLLSEVVYQKDAKGTVANMVLMPPAAFDVKPYKIK*	hallmark_hmm	common_virus	C176	17262	2509236	2526498	GCA_000834845.1|CP009935.1@region_2509237_2526498@tool_cenote_CDS_0011	persistent	direct	high	1055	0.999	GCA_000834845.1_02515
GCA_000834845.1|CP009935.1@region_2509237_2526498@tool_cenote	cenote	CDS	2519150	2519746	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C176	9915	10511	GCA_000834845_1_1_2296	GCA_000834845_1_1_2296	+	4501786	.	PDB:4RU3_A	phage-baseplate	MSDVSGQISTLYRQIKMLLGIGRVTAFDDSNGVQTVQYQTPLEVHSDTPRLAEFGFSSGLPAGSDVVIGFLGGDRSSGMIIASHHPAYRHMGLNVGETVIYAQWGQFIKLTESGVVIEANNQPVTVNNATEVTVNATVKVRLNTPLLEVSGNIIDNADSNSATLKSLRDAYNSHNHQLKNVQSGSTTLTSETPAKVVR*	common_virus_hmm	common_virus	C176	17262	2509236	2526498	GCA_000834845.1|CP009935.1@region_2509237_2526498@tool_cenote_CDS_0012	persistent	direct	high	596	0.998	GCA_000834845.1_02516
GCA_000834845.1|CP009935.1@region_2509237_2526498@tool_cenote	cenote	CDS	2519743	2520198	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C176	10508	10963	GCA_000834845_1_1_2297	GCA_000834845_1_1_2297	+	4501786	.	COG4381	Mu-like prophage protein gp46  [Mobilome: prophages, transposons]. 	MTTDIKTVWDVNALLGDWQTGNGGLLEGDDLQTAILLSLFTDRLARADDAIDSPDRRGWWGDSGAASAIGSRLWLLRREKLTTQVAIKAEDYATEALAWLIEDSVVAAINVRAHIIAPNTLVLVVSYQQPSQTRSANQTQSSIKFSWVWEE*	mmseqs_cdd	nonviral_gene	C176	17262	2509236	2526498	GCA_000834845.1|CP009935.1@region_2509237_2526498@tool_cenote_CDS_0013	persistent	direct	high	455	0.998	GCA_000834845.1_02517
GCA_000834845.1|CP009935.1@region_2509237_2526498@tool_cenote	cenote	CDS	2520202	2521338	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C176	10967	12103	GCA_000834845_1_1_2298	GCA_000834845_1_1_2298	+	4501786	.	PFAM:PF04865.13	Baseplate-J-like-protein	MPFNRPTLSELRQRNQSYIQSELKTGGNLLRFSNIGVISDADAGMAHLHYGYLDYIARQATPYNATDEYLAAWGALKDVFRKAANPATSNEVRFSGIAGRVIPAGRLLNRADGYQYQLNKEVIIAEQGSALGEITAILPSPLDDATGGGNRGNSPAGTVLTLDIAIDGVQATATALTKISGGADIESEDAFRSRMLLAYQNVPQGGNDTDYQSWALAVPGVTRCWVKRRLMGAGTVGVYIMCDDNDHGGFPQGTDGISSLEEWGAVKATGDQGRVADAIYPQQPIIALVYVCAPVAQAIDFVISGISYADSTTTAAINTAIDEVFFTEGQPGGKILWSSLLLAIGEVPGSGGFIMASPSANIELQTGKLPVRGTVSYL*	hallmark_hmm	common_virus	C176	17262	2509236	2526498	GCA_000834845.1|CP009935.1@region_2509237_2526498@tool_cenote_CDS_0014	persistent	direct	high	1136	0.999	GCA_000834845.1_02518
GCA_000834845.1|CP009935.1@region_2509237_2526498@tool_cenote	cenote	CDS	2521335	2521595	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C176	12100	12360	GCA_000834845_1_1_2299	GCA_000834845_1_1_2299	+	4501786	.	PFAM:PF10076.8	baseplate-wedge-subunit	MSRYSVSEYTGALQALMPMGLVWPRRHDGIQTEVLRALANAYQRSDEDAQDLLSAAFPATATALLPEWEATLGLPDLCARLVRSIA*	phrogs_hmm	nonviral_gene	C176	17262	2509236	2526498	GCA_000834845.1|CP009935.1@region_2509237_2526498@tool_cenote_CDS_0015	shell	direct	high	260	0.996	GCA_000834845.1_02519
GCA_000834845.1|CP009935.1@region_2509237_2526498@tool_cenote	cenote	CDS	2521592	2521939	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C176	12357	12704	GCA_000834845_1_1_2300	GCA_000834845_1_1_2300	+	4501786	.	PFAM:PF10076.8	baseplate-wedge-subunit	MIQRQRAVVAKLFGIGGQSAAYFIRVAKALGYDITVTQYRQACAGMSVCRDALNGEEWPFTWLITAPETTIHNAQCSLTYCSDPLRSWGNKQLECRLAVLNPSHSILKFGYTLLS*	phrogs_hmm	nonviral_gene	C176	17262	2509236	2526498	GCA_000834845.1|CP009935.1@region_2509237_2526498@tool_cenote_CDS_0016	shell	direct	high	347	0.997	GCA_000834845.1_02520
GCA_000834845.1|CP009935.1@region_2509237_2526498@tool_cenote	cenote	CDS	2522036	2522815	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C176	12801	13580	GCA_000834845_1_1_2301	GCA_000834845_1_1_2301	+	4501786	.	PDB:1OCY_A	Tail-fiber	MQKIGDIPNTRADSNGEFTDGNVAGGVPPTLLPAEWFNTIQRELVTVVQDGGLTLDPNDDTQVLAALKKLFLQSGNNLSEIKDAGPTAITQTLANLGLGEGSAILVGVPLPWPTATPPEGWLKCNGAIFDKVKYPKLALAYPSGILPDLRGEFIRGWDDGLGVDAGREILSIQGDAIRNISGGIQGRNEATSARLFSSNATGVFRTDGQFGSYAASADVAVGVTDDRLAELFFDASRSVPTANENRPRNIAFNYIVRAA*	hallmark_hmm	common_virus	C176	17262	2509236	2526498	GCA_000834845.1|CP009935.1@region_2509237_2526498@tool_cenote_CDS_0017	persistent	direct	high	779	0.999	GCA_000834845.1_02521
GCA_000834845.1|CP009935.1@region_2509237_2526498@tool_cenote	cenote	CDS	2523113	2523853	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C176	13878	14618	GCA_000834845_1_1_2302	GCA_000834845_1_1_2302	+	4501786	.	COG1737	DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains [Transcription]. 	MFTYKEISTLNELELIVYNYIIKNTDKVMYMTIRELADASGVSTTTVLRFCKKMNCDGYSEFRIRFKLYLEHDEKPPVTFGISEIISYFKSINNSEFDELLDNVAKQIAATRRVIFVGIGTSGALGKYSARFFSNVGKYSTYIDDPYYPINSDMYQDAVAIILSVSGETEEIIRIANQFSLQNCKIISLTNSESSTLAKMADLNISYHMPPVILEGQYNITTQIPVLYIIETIGKKLPQLMNKNTK*	mmseqs_cdd	nonviral_gene	C176	17262	2509236	2526498	GCA_000834845.1|CP009935.1@region_2509237_2526498@tool_cenote_CDS_0018	persistent	direct	high	740	0.999	GCA_000834845.1_02522
GCA_000834845.1|CP009935.1@region_2509237_2526498@tool_cenote	cenote	CDS	2524144	2525580	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C176	14909	16345	GCA_000834845_1_1_2303	GCA_000834845_1_1_2303	+	4501786	.	PRK15014	6-phospho-beta-glucosidase BglA; Provisional	MSYQQLPKDFLWGGAVAAHQVEGGWDKGGKGVSIADVLSGGSHGVDRVMTDGVLEGYRYPNHEAVDFYSHYKEDIALFAEMGFKCFRTSIAWTRIFPHGDEQQPNEAGLQFYDDMFDELLKYGIEPVITLSHFEMPWHLVKEYGGWKNRKVVDFFVKFSEVVMARYKSKVKYWMTFNEINNQRNWKYPLFGYCCSGVVFTEQENPEETLYQVLHHQFVASAKVVKLGHAINPEFKIGCMVAMVPLYPFSCHPDDMMYSVEAMRERYLFGDVHMRGYYPSYILQEWARRGFNIHMEEGDLETLRDGCADYMGLSYYMSNSVSAINPGSGNSLSGFEGSVPNPHVKASDWGWQIDPVGLRYSLSVLYERYQKPLFIVENGFGAIDKVAADGMVHDDYRIAYLKAHIEQMKKAVFEDGVDLMGYTPWGCIDCVSFTTGEYSKRYGFIYVDKNDDGTGTMARSRKLSFDWYKKVIASNGEVL*	mmseqs_cdd	nonviral_gene	C176	17262	2509236	2526498	GCA_000834845.1|CP009935.1@region_2509237_2526498@tool_cenote_CDS_0019	persistent	direct	high	1436	0.999	GCA_000834845.1_02524
GCA_000834845.1|CP009935.1@region_2509237_2526498@tool_cenote	cenote	CDS	2525706	2526068	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C176	16471	16833	GCA_000834845_1_1_2304	GCA_000834845_1_1_2304	-	4501786	.	.	hypothetical protein	MTSAIKITVGYHSFLLPDTHTDYAFPAYINKHIDLIWRYIENNDKIEELSSNPFSKGRTAVLVKAKFLSSELKEFKLKTGIIGYPFDMKDISLYLASQNIKITLCTEFKRNGTLVNSLPS*	.	hypothetical_protein	C176	17262	2509236	2526498	GCA_000834845.1|CP009935.1@region_2509237_2526498@tool_cenote_CDS_0020	persistent	direct	high	362	0.997	GCA_000834845.1_02525
GCA_000834845.1|CP009935.1@region_2509237_2526498@tool_cenote	cenote	CDS	2526405	2526497	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C176	17170	17262	GCA_000834845_1_1_2305	GCA_000834845_1_1_2305	-	4501786	.	.	hypothetical protein	MALTEEQKALFDALTQLQRRFVTALLEGAN*	.	hypothetical_protein	C176	17262	2509236	2526498	GCA_000834845.1|CP009935.1@region_2509237_2526498@tool_cenote_CDS_0021	shell	direct	moderate	92	0.989	GCA_000834845.1_02526
GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote	cenote	CDS	3262358	3262948	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C218	1	591	GCA_000834845_1_1_2947	GCA_000834845_1_1_2947	-	4501786	.	PRK04296	thymidine kinase; Provisional	MAQLYFYYSAMNAGKSTALLQSSYNYQERGMRTLVFTAEIDNRFGVGTVSSRIGLSSQAQLYNSGTSLLSIIAAEHQDTPIHCILLDECQFLTKEQVQELCQVVDELHLPVLCYGLRTDFLGELFPGSKYLLAWADKLVELKTICHCGRKANMVLRLDEQGRAVHNGEQVVIGGNESYVSVCRRHYKEAIKAACCS*	mmseqs_cdd	common_virus	C218	24420	3262358	3286778	GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote_CDS_0001	persistent	direct	high	590	0.998	GCA_000834845.1_03233
GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote	cenote	CDS	3263698	3264105	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C218	1341	1748	GCA_000834845_1_1_2948	GCA_000834845_1_1_2948	+	4501786	.	PRK10947	DNA-binding transcriptional regulator H-NS. 	MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESQSQAEIEERARKLQQYREMLIADGIDPNELLQASAAAKAAGKAKRAARPAKYQYKDENGELKTWTGQGRTPAVIKKAIEEQGKSLDDFLL*	mmseqs_cdd	nonviral_gene	C218	24420	3262358	3286778	GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote_CDS_0002	persistent	direct	high	407	0.998	GCA_000834845.1_03234
GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote	cenote	CDS	3264313	3264771	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C218	1956	2414	GCA_000834845_1_1_2949	GCA_000834845_1_1_2949	+	4501786	.	PDB:2XO6_A	TN-transposase	MRDEKSLAHTRWNCKYHIVFAPKYRRQVFYREKRRAIGSILRKLCEWKNVNILEAEYCVDHIHMLLEIPPKMSVSGFMGYLKGKGSLMLYEQFGDLKFKYRNREFWCRGYYVDTVGKNTARIQEYIKHQLEEDKMGEQLSIPYPGSPFTGRK*	common_virus_hmm	common_virus	C218	24420	3262358	3286778	GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote_CDS_0003	persistent	direct	high	458	0.998	GCA_000834845.1_03236
GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote	cenote	CDS	3264852	3265664	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C218	2495	3307	GCA_000834845_1_1_2950	GCA_000834845_1_1_2950	+	4501786	.	PFAM:PF00872.17	Transposase,-Mutator-family	MDEKKLKALAAELAKGLKTEADLNAFSRMLTKLTVETALNAELTEHLGHEKNTPKSGSNTRNGYSSKTLLCDDGEIELNTPRDRENTFEPQLIKKNQTRITQMDSQILSLYAKGMTTREIVATFKEMYDADVSPTLISKVTDAVKEQVAEWQNRQLDALYPIVYMDCIVVKVRQNGSVINKAVFLALGINTEGQKELLGMWLAENEGAKFWLSVLTELKNRGLQDILIACVDGLKGFPDAINSVYPQTHIQLCIIHMVRNSLKYVSWNGL*	common_virus_hmm	common_virus	C218	24420	3262358	3286778	GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote_CDS_0004	persistent	direct	high	812	0.999	GCA_000834845.1_03237
GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote	cenote	CDS	3265642	3266061	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C218	3285	3704	GCA_000834845_1_1_2951	GCA_000834845_1_1_2951	+	4501786	.	PFAM:PF00872.17	Transposase,-Mutator-family	MCHGTDYKAVTSGLKMVYQAPTEEAALMALDKFAEAWDDKYPQISKSWRTHWENLNTFFGYPPDIRKAIYTTNAIESVNSVIRAAIKKRKVFPTDDSVRKVVYLAIKDASKKWSMPIQNWRLAMSRFIIEFGDRLSDHL*	common_virus_hmm	common_virus	C218	24420	3262358	3286778	GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote_CDS_0005	persistent	direct	high	419	0.998	GCA_000834845.1_03238
GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote	cenote	CDS	3266351	3267304	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C218	3994	4947	GCA_000834845_1_1_2952	GCA_000834845_1_1_2952	+	4501786	.	PDB:1BCO_A	Mu-Transposase	MVTFETVMEIKILHKQGMSSRAIARELGISRNTVKRYLQAKSEPPKYTPRPAVASLLDEYRDYIRQRIADAHPYKIPATVIAREIRDQGYRGGMTILRAFIRSLSVPQEQEPAVRFETEPGRQMQVDWGTMRNGCSPLHVFVAVLGYSRMLYIEFTDNMRYDTLETCHRNAFRFFGGVPREVLYDNMKTVVLQRDAYQTGQHRFHPSLWQFGKEMGFSPRLCRPFRAQTKGKVERMVQYTRNSFYIPLMTRLRPMGITVDVETANRHGLRWLHDVANQRKHETIQARPAIAGSKSSSPCWHCLRRKKSMTCILMKIW*	common_virus_hmm	common_virus	C218	24420	3262358	3286778	GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote_CDS_0006	persistent	direct	high	953	0.999	GCA_000834845.1_03239
GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote	cenote	CDS	3267372	3268151	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C218	5015	5794	GCA_000834845_1_1_2953	GCA_000834845_1_1_2953	+	4501786	.	PDB:4M4W_K	Replicative-helicase	MMELQHQRLMALAGQLQLESLISAAPALSQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFTFATGAPQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIAMGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPFSQEEAKLFFQVIAKRYEKSAMILTSNLPFGQWDQTFAGDAALTSAMLDRILHHSHVVQIKGESYRLRQKRKAGVIAEANPE*	rep_hall_hmm	common_virus	C218	24420	3262358	3286778	GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote_CDS_0007	persistent	direct	high	779	0.999	GCA_000834845.1_03241
GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote	cenote	CDS	3268319	3268579	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C218	5962	6222	GCA_000834845_1_1_2954	GCA_000834845_1_1_2954	-	4501786	.	pfam06806	Putative excisionase (DUF1233). This family consists of several putative phage excisionase proteins of around 80 residues in length.	MDNVIQMNPSKWVSEDLLMSLNGMTKHMIQHARRKSWMEGREYIHVAPDLNPKENSPIMYNRQEIDNWVERQRPAIRRRIGERISA*	mmseqs_cdd	common_virus	C218	24420	3262358	3286778	GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote_CDS_0008	shell	direct	high	260	0.996	GCA_000834845.1_03242
GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote	cenote	CDS	3268879	3269577	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C218	6522	7220	GCA_000834845_1_1_2955	GCA_000834845_1_1_2955	-	4501786	.	PDB:2G1P_B	Adenine-specific-DNA-methyltransferase	MLRKERSYAEIYNDLDGDVVNLFFVLRDMTLRECLIEALILTPYSRDEFTDAYGEAETMVERARKLVIRATMGFGSAGATKGTTGFRLDTKRGSATAQHLWARMPENLAAVGQRFEGVLVENRDAVQCMLDHDTVSTLHFVDPPYVHDTRVISSRYYRHEMDNDAHLTLLDTVNNLEGMVVLSGYNTDMYNDILTGWQKQEKQSSAAGRKGSVKRLECLWLSPNVLSGSKAA*	common_virus_hmm	common_virus	C218	24420	3262358	3286778	GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote_CDS_0009	shell	direct	high	698	0.999	GCA_000834845.1_03243
GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote	cenote	CDS	3269604	3270050	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C218	7247	7693	GCA_000834845_1_1_2956	GCA_000834845_1_1_2956	+	4501786	.	pfam05772	NinB protein. The ninR region of phage lambda contains two recombination genes, orf (ninB) and rap (ninG), that have roles when the RecF and RecBCD recombination pathways of E. coli, respectively, operate on phage lambda. NinB binds to single-stranded DNA.	MDKKVFVLCGDQYKRNAIQFISQLPVNPDKPLLITIQERTRTLDQNARLWATLGDIAKQVVWHGQKLSSEDWKHIFTASLKGQRSAPGLEGGFVVLGQSTSRMTVGELRDLIELINAFGATHGVKFSDESRLAIEWANRFGDKGKVAA*	mmseqs_cdd	common_virus	C218	24420	3262358	3286778	GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote_CDS_0010	shell	direct	high	446	0.998	GCA_000834845.1_03244
GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote	cenote	CDS	3270124	3270729	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C218	7767	8372	GCA_000834845_1_1_2957	GCA_000834845_1_1_2957	+	4501786	.	PFAM:PF05766.11	NinG-recombination-protein	MNKLPKNRNCKVCKTRFKPETVYQWWCDEEHKEEYIKQLALKARQNRIQKTEQRRREETQAERRSLKIRKLAVKPLSYFAKQAQQAFNEYIRTRDAGDACVSCGRFHEGQYHAGHYLTVGANPELRFNEDNCHRQCAPCNNHLSGNIEKYTPNLIAKIGQVRFDILMGPHEMTNYRRDDYIRIRDEYRAKTKALKKLREAA*	common_virus_hmm	common_virus	C218	24420	3262358	3286778	GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote_CDS_0011	shell	direct	high	605	0.998	GCA_000834845.1_03245
GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote	cenote	CDS	3270730	3271119	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C218	8373	8762	GCA_000834845_1_1_2958	GCA_000834845_1_1_2958	+	4501786	.	pfam06530	Phage antitermination protein Q. This family consists of several phage antitermination protein Q and related bacterial sequences. Antiterminator proteins control gene expression by recognising control signals near the promoter and preventing transcriptional termination which would otherwise occur at sites that may be a long way downstream.	MRDIQLVLERWGAWVADNREDVYWPPIAAGFSGLIPSKVKSRTQCCDEDGLIISGIMAGLNSKHPVVHSLLFDYYVFGKTFMQLSKEHHCSDTHIGKKLQNAEGVIDGYLMALEVKLEMDKQVRRELAA*	mmseqs_cdd	common_virus	C218	24420	3262358	3286778	GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote_CDS_0012	shell	direct	high	389	0.997	GCA_000834845.1_03246
GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote	cenote	CDS	3271390	3271953	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C218	9033	9596	GCA_000834845_1_1_2959	GCA_000834845_1_1_2959	+	4501786	.	smart01040	BRO family, N-terminal domain. This family includes the N-terminus of baculovirus BRO and ALI motif proteins. The function of BRO proteins is unknown. It has been suggested that BRO-A and BRO-C are DNA binding proteins that influence host DNA replication and/or transcription. This Pfam domain does not include the characteristic invariant alanine, leucine, isoleucine motif of the ALI proteins.	MNTQLSFRNTQFDIANHSGQIWLRGTEIAKALGMEKSDAVSQIYNRNSDEFTEAMTLTLKLSVKGFGNGKSAKDVRVFSLRGAHLIAMFARTEIAKEFRKWVLDILDKEVGNTPPVITPVTKVPAELKSRYRVRVIIYDEMFGNCLELIGKADTFRTIASGIATDLGFKPTGFVAVQMDSSKFKRIY*	mmseqs_cdd	nonviral_gene	C218	24420	3262358	3286778	GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote_CDS_0013	shell	direct	high	563	0.998	GCA_000834845.1_03249
GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote	cenote	CDS	3272038	3272214	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C218	9681	9857	GCA_000834845_1_1_2960	GCA_000834845_1_1_2960	-	4501786	.	.	hypothetical protein	MITDKDVVPALASVGFNRYTTFGWVLPRPDLGGWQDSGSFSTHANVETKKPRDIRGLF*	.	hypothetical_protein	C218	24420	3262358	3286778	GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote_CDS_0014	shell	direct	high	176	0.994	GCA_000834845.1_03250
GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote	cenote	CDS	3272377	3272586	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C218	10020	10229	GCA_000834845_1_1_2961	GCA_000834845_1_1_2961	+	4501786	.	.	hypothetical protein	MKFAELPHEAQIMAAQTLSDRFPAAGSPKSNGFEPAMALARDAKAAFIELYSTDDDEVCGDKLKLGQDY*	.	hypothetical_protein	C218	24420	3262358	3286778	GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote_CDS_0015	shell	direct	high	209	0.995	GCA_000834845.1_03251
GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote	cenote	CDS	3272583	3272687	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C218	10226	10330	GCA_000834845_1_1_2962	GCA_000834845_1_1_2962	-	4501786	.	2LLZ_A	Uncharacterized protein yjdK	MSDFTIRVELHNADSDDYEAVTKSNGRAWSLSKA*	hhsuite_tools	hypothetical_protein	C218	24420	3262358	3286778	GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote_CDS_0016	shell	ambiguous	low	5	0.048	GCA_000834845.1_03251
GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote	cenote	CDS	3272933	3273130	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C218	10576	10773	GCA_000834845_1_1_2963	GCA_000834845_1_1_2963	+	4501786	.	pfam16080	Bacteriophage holin family HP1. Phage_holin_2_3 is a family of small hydrophobic phage proteins called holins with one transmembrane domain. Holins are produced by double-stranded DNA bacteriophages that use an endolysin-holin strategy to achieve lysis of their hosts. The endolysins are peptidoglycan-degrading enzymes that are usually accumulated in the cytosol until access to the cell wall substrate is provided by the holin membrane lesion.	MRMEKYTSGSSYGWGAFTVMLGSLSLNEWAIVVGIACTVGTFTINWHYKRKEFQLREKANESSSS*	mmseqs_cdd	common_virus	C218	24420	3262358	3286778	GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote_CDS_0017	shell	direct	high	197	0.995	GCA_000834845.1_03252
GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote	cenote	CDS	3273161	3273673	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C218	10804	11316	GCA_000834845_1_1_2964	GCA_000834845_1_1_2964	+	4501786	.	CDD:cd16901	P1-lysozyme	MATIKRIASGSACAVAVIIAIVISAGNVRTSERGLELIGNAESCRRDPYACPAGVLTDGIGNTHGVKAGVIKTDTQIAEDWEKNILDAERCVIRYANGNKLPPSAFDAATSISFNAGCSLMQKSTMFKYFRAGNVTAACEQFPRWIYGGGKKLPGLVTRREKEKALCLES*	common_virus_hmm	common_virus	C218	24420	3262358	3286778	GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote_CDS_0018	shell	direct	high	512	0.998	GCA_000834845.1_03253
GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote	cenote	CDS	3273658	3274116	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C218	11301	11759	GCA_000834845_1_1_2965	GCA_000834845_1_1_2965	+	4501786	.	pfam03245	Bacteriophage Rz lysis protein. This protein is involved in host lysis. This family is not considered to be a peptidase according to the MEROPs database. This family Rz and the Rz1 protein (pfam06085) represent a unique example of two genes located in different reading frames in the same nucleotide sequence, which encode different proteins that are both required in the same physiological pathway.	MPGKLTTALIAVIAALLVGVTYYQNEAAKLQRDVVEIASVANQQKKDLQLIEAQRQAVAAIDIKTTKELADVKSENERLRTDIASGTKRLQLNATCSKPAPKTTGPASVPDDASARLTNAAERDYLSLRERIGIATSQISGLQDYITNVCLK*	mmseqs_cdd	common_virus	C218	24420	3262358	3286778	GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote_CDS_0019	shell	direct	high	458	0.998	GCA_000834845.1_03254
GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote	cenote	CDS	3274232	3274390	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C218	11875	12033	GCA_000834845_1_1_2966	GCA_000834845_1_1_2966	+	4501786	.	.	hypothetical protein	MAKILAYKISIKWWVIPYLHTLNIFCFIFATEPNIDAIGDFIVKHGVKTEIV*	.	hypothetical_protein	C218	24420	3262358	3286778	GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote_CDS_0020	shell	direct	high	158	0.994	GCA_000834845.1_03255
GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote	cenote	CDS	3274662	3275375	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C218	12305	13018	GCA_000834845_1_1_2967	GCA_000834845_1_1_2967	+	4501786	.	PFAM:PF03374.13	KilA-protein	MKSMIAIEQEASMTSLDFLRNIINPARIEYGEPEVENRHFLSRIEDEIDDLGVAENFYVTTGQGASRAVKGYMLNMEQMTLIGMRESKAVRRSVLAKLKVMHCPVIPQSLPEALRLAADLAEHNAKLKNELAVAAPKADFVDNYVNASGSFGFREACKLLKAKEPEFRAFLIASNVMYVLGGKMTPRAPHIDAGRFTVKTGENLNNGHAFTQAKFTPKGIQWIAGLWASWQLNNQAA*	common_virus_hmm	common_virus	C218	24420	3262358	3286778	GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote_CDS_0021	shell	direct	high	713	0.999	GCA_000834845.1_03256
GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote	cenote	CDS	3275831	3276136	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C218	13474	13779	GCA_000834845_1_1_2968	GCA_000834845_1_1_2968	+	4501786	.	.	hypothetical protein	MANSDTQMKRPYPPLSFVNEFRPHIELVPATEVLEWVNSQILSDDGELHNPDHGHLIDADIKIMWASSAFEKQGRTVLGQAEQVAMRAGGWQSSTKKGSRY*	.	hypothetical_protein	C218	24420	3262358	3286778	GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote_CDS_0022	shell	direct	high	305	0.997	GCA_000834845.1_03257
GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote	cenote	CDS	3276328	3276777	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C218	13971	14420	GCA_000834845_1_1_2969	GCA_000834845_1_1_2969	+	4501786	.	PF10045.9	Uncharacterized conserved protein (DUF2280)	MAALKPDVKAFIIQALACFDTLSMVAEAVQKEFGIKVTHQQVESHDPTKVSGKGLAKKWVELFTITRERFQTEIASIPIANKAYRLRALDRMAAATEKQKNFGMTAQLMEQAAKEVGDAYTNRQKVEHSGGVAISSVASVMDEIGDDDL*	hhsuite_tools	nonviral_gene	C218	24420	3262358	3286778	GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote_CDS_0023	shell	direct	high	449	0.998	GCA_000834845.1_03258
GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote	cenote	CDS	3276787	3277365	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C218	14430	15008	GCA_000834845_1_1_2970	GCA_000834845_1_1_2970	+	4501786	.	PDB:5OE8_A	Large-Terminase	MLTDKQKKLLKNRFWRLNHLYKIKDKNGKCVTFKMTPEQLEYFDGMHDRNVILKARQLGFTTEVCIIQLDLAIFHRKECALIAHTRPDAERLFRNKTQFAYQRMTDDIKKANPLVKETTSEYVFKNGGSVTVSTSFRGGTLYSLHVSEFGKICAKYPDKAKEIVTGAFEAVPLGGKITLESTAEGETVNNIV*	hallmark_hmm	common_virus	C218	24420	3262358	3286778	GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote_CDS_0024	shell	direct	high	578	0.998	GCA_000834845.1_03259
GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote	cenote	CDS	3277413	3278621	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C218	15056	16264	GCA_000834845_1_1_2971	GCA_000834845_1_1_2971	+	4501786	.	PFAM:PF00872.17	Transposase,-Mutator-family	MDEKKLKALAAELAKGLKTEADLNAFSRMLTKLTVETALNAELTEHLGHEKNTPKSGSNTRNGYSSKTLLCDDGEIELNTPRDRENTFEPQLIKKNQTRITQMDSQILSLYAKGMTTREIVATFKEMYDADVSPTLISKVTDAVKEQVAEWQNRQLDALYPIVYMDCIVVKVRQNGSVINKAVFLALGINTEGQKELLGMWLAENEGAKFWLSVLTELKNRGLQDILIACVDGLKGFPDAINSVYPQTHIQLCIIHMVRNSLKYVSWKDYKAVTSGLKMVYQAPTEEAALMALDKFAEAWDDKYPQISKSWRTHWENLNTFFGYPPDIRKAIYTTNAIESVNSVIRAAIKKRKVFPTDDSVRKVVYLAIKDASKKWSMPIQNWRLAMSRFIIEFGDRLSDHL*	common_virus_hmm	common_virus	C218	24420	3262358	3286778	GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote_CDS_0025	persistent	direct	high	1208	0.999	GCA_000834845.1_03260
GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote	cenote	CDS	3278626	3279600	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C218	16269	17243	GCA_000834845_1_1_2972	GCA_000834845_1_1_2972	+	4501786	.	PDB:2O0J_A	Large-Terminase	MAVTQNYGQAPEGRAGYFFDYCQDAEKSQLQGKLLSNLDWKFFFFSWWKNPQYAIDPVEALPQRLVDYFSEMEAKHGVQLNERQKAWYYAKEKTLGDDMKREYPTIPAEAFQQSVEGAYYAKQFRWLYTNKRICKLPDNSHLPVHTFWDIGVGDSTAIWFVREVGEEFHIIDYYENSGEGLRHYMKVLKDRGYTYGDHWGPHDIENREFGSDAKSRKELAREGYEIDGQVYSMTFKVVPKTGVDTGIESVREILSKCVFDEEKCAEGITHLEGYRKEWDDKRGCWKDKPLHDHTSHGSDGFRYFAVAKNNKRQEAFSINMRTAY*	hallmark_hmm	common_virus	C218	24420	3262358	3286778	GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote_CDS_0026	shell	direct	high	974	0.999	GCA_000834845.1_03261
GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote	cenote	CDS	3279600	3280328	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C218	17243	17971	GCA_000834845_1_1_2973	GCA_000834845_1_1_2973	+	4501786	.	PDB:2JES_G	Portal-protein	MANNDITFIRPEHGAASPLWETVRDVCRGPDVVKRRRHKYLPKLDPTNNSEENNRRNDDYLRRAVFYAITGHTKNGLIGMAFRRDPTVTIVDKMEYLKTNANGAGISIYQQAQSVLESVLEVAREGLYVDYSADMKGAIILNYRAEDIINWRTERINGRDKLVLVVLRECVEEPDGYGFKDRIQYRELAMDGGRFVCRVWRNVGPKKSGVYVVDSEYYPVIQFGGAWDEIPFTFVGAQNNDP*	hallmark_hmm	common_virus	C218	24420	3262358	3286778	GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote_CDS_0027	shell	direct	high	728	0.999	GCA_000834845.1_03262
GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote	cenote	CDS	3280347	3280988	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C218	17990	18631	GCA_000834845_1_1_2974	GCA_000834845_1_1_2974	+	4501786	.	PDB:7Z4W_L	Portal-Protein	MALTEINLGHYRNSADYEDSLFFCGQVQPWISGLTEEWRDWLQKAGVALGSRSPILLPKDGASGFNQAQPNMIAKEGMDSKRDYMISLGARLVEQNSAVKTATQATGDQAASTSVLGICCANVSEAYTQALLWCAKYMGDKDAEVAYSISQEFIQRVADSGMLAAIVAAWQSGAIRDADMIRAMQKLDIIDPESNPNDVLDELKNQSPSLTGG*	hallmark_hmm	common_virus	C218	24420	3262358	3286778	GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote_CDS_0028	shell	direct	high	641	0.998	GCA_000834845.1_03263
GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote	cenote	CDS	3280989	3282101	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C218	18632	19744	GCA_000834845_1_1_2975	GCA_000834845_1_1_2975	+	4501786	.	PFAM:PF04233.13	minor-capsid-component	MATINERLRDEVIAHSRFQSRYGAGVARKMVKVLNESDAELSARLIVALDELNPNSVTVKRLESLLASVRQVNKQAVDAMYTSLSDELLDFAKHEVSYQLSLFDSLLPGPVLNHFPLASITKEQVYAAAMAQPFQGRLLRDWAENIEADRMTRIINTVKNGYLAGDTVEQMARKVRGTRARNYQDGAIEAGRKNVTAVVKTAVTHMAAVARDKFADNNSNIIDAKQWLSTLDNKTSHDCIIRDRLKYTLEGKPIGHKIPYLQGPGRIHFCCRSMETLITKSWRELGIDIDEMDEGTRASMDGQVPAGTTYSEWLQRQSYRRQVQVLGETRARLMQDGGMRTDEFFTDKGEWITLQQLRDIDGRAFSDAGL*	common_virus_hmm	common_virus	C218	24420	3262358	3286778	GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote_CDS_0029	shell	direct	high	1112	0.999	GCA_000834845.1_03264
GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote	cenote	CDS	3282223	3282996	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C218	19866	20639	GCA_000834845_1_1_2976	GCA_000834845_1_1_2976	+	4501786	.	PFAM:PF06810.10	minor-structural-protein-	MLFRNIARKYYAEAGEGGEGGGGAAAAITPEIQALIDARVNESVTGLKTKNSELLGKLKEQGENLKRYDGIDPDAVKTILQRFSDDEEAKLIAAGKIDEVLDKRTERLRADVDKKLKVANERAEKAENFSKKFSDRVLGDAIRSAALKTGALPGAADDIILRAKGVFTLNDEGEAVAVDKDGSALLGKDGKTPLTPHEWAESLKDVAPHLWPQAEGTNAGGHKPNSGALKRSTMTSAQKADFIRANGSQAFLKLPKE*	hallmark_hmm	common_virus	C218	24420	3262358	3286778	GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote_CDS_0030	shell	direct	high	773	0.999	GCA_000834845.1_03266
GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote	cenote	CDS	3283010	3283684	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C218	20653	21327	GCA_000834845_1_1_2977	GCA_000834845_1_1_2977	+	4501786	.	PDB:4AN5_F	Major-Capsid-protein	MTTTVNSDLIIYNDLAQTSYLERRQDNLDVFNASSNGAIVLDNALIEGDFRKRAFYQLGGSIEHRDVDSTGKVTGKKIGAGESVGVKAPWKYGPYQTTEEAFKRRGRDVSEFSEIVGVDVADASLEGFIKYGIQALSASIGANPDMVVTANIEVDGKKTLTKGMRKYGDRFGRIALFVMHSSTYFDIIDQAIAAKIYEEAGVLPIYQYPSSIDYGTVHAGRGSY*	hallmark_hmm	common_virus	C218	24420	3262358	3286778	GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote_CDS_0031	shell	direct	high	674	0.999	GCA_000834845.1_03267
GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote	cenote	CDS	3283662	3283874	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C218	21305	21517	GCA_000834845_1_1_2978	GCA_000834845_1_1_2978	+	4501786	.	CDD:cd08053	Head-Tail-Connector-Protein	MLAVEAIDGELLGSNREAAIKSEAVSGAVSITYAVSDTESFTPNYPAVMAILRGFVAGSGFAINAIARRE*	hallmark_hmm	common_virus	C218	24420	3262358	3286778	GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote_CDS_0032	shell	direct	high	212	0.995	GCA_000834845.1_03268
GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote	cenote	CDS	3283871	3284125	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C218	21514	21768	GCA_000834845_1_1_2979	GCA_000834845_1_1_2979	+	4501786	.	.	hypothetical protein	MTAKLNIIQFAGYDKADHNKANVIRLLKEALEFAENGNPQSIAIIMISNGDVMDCYHHGGAPYVMVGAIESLKTDYIHSQIERR*	.	hypothetical_protein	C218	24420	3262358	3286778	GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote_CDS_0033	shell	direct	high	254	0.996	GCA_000834845.1_03269
GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote	cenote	CDS	3284127	3284477	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C218	21770	22120	GCA_000834845_1_1_2980	GCA_000834845_1_1_2980	+	4501786	.	PFAM:PF05354.10	Head-Tail-Connector-Protein	MAINYPRMRATATRLFTENGATYQLTRGGGVEFVGGVEVDIPLESFPVIGVISSYSPGEIDGTLIQNGDVKMSATADVEIRIGDLIMVDGKKHRVIKPNPVKPAALLICYKPQLRA*	hallmark_hmm	common_virus	C218	24420	3262358	3286778	GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote_CDS_0034	shell	direct	high	350	0.997	GCA_000834845.1_03270
GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote	cenote	CDS	3284479	3285063	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C218	22122	22706	GCA_000834845_1_1_2981	GCA_000834845_1_1_2981	+	4501786	.	PFAM:PF04883.11	tail-component	MADNSSFMASINAFIEKGKRNQELVVQKGAIKILNRLVTMSPVGNPDLWAINNTAVSYNDAVFEHNEELKKDSANLTKTGRLKKRARVTDSMDVKAPAGYTGGRFRGNWQVSLDVQQEGETGRKDPNGNITIAVGNYMIEQFKVGTKAIYFTNNVPYAYPLEFGHSSQAPSGMIRITAEDAVKYFTEAANEVNK*	hallmark_hmm	common_virus	C218	24420	3262358	3286778	GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote_CDS_0035	shell	direct	high	584	0.998	GCA_000834845.1_03271
GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote	cenote	CDS	3285060	3285467	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C218	22703	23110	GCA_000834845_1_1_2982	GCA_000834845_1_1_2982	+	4501786	.	PDB:2L25_A	tail-completion-protein	MSTQRITALLEKRLGEWAAIKGIPLAAENVSFDDTGTMYLQSHVMPATTDAIDLAQVSRVFRGVYQININVKAGGGKSKSHIIAAELIELFNLNTELTDGVVTCYINSVPSQFPSITNGISYTTPISMSYRADVI*	hallmark_hmm	common_virus	C218	24420	3262358	3286778	GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote_CDS_0036	shell	direct	high	407	0.998	GCA_000834845.1_03272
GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote	cenote	CDS	3285533	3286453	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C218	23176	24096	GCA_000834845_1_1_2983	GCA_000834845_1_1_2983	+	4501786	.	PFAM:PF08813.10	tail-tube-protein	MGFALPNGAGIYLAKTYETEVAVTAVSNAVDAVLTVATGHDIAEGDIVQLTSSWGALNDLAAKVTASTTTSLTLGSIDTSNTDRFAVGGGVGTVKKIASWIEIPQITEVANSGGDQQMIQIQFLSDTRQRNLNTFKAAQSQTLTLAHDYSQPVYPVLRAADESEQTLATYMYVPKAKENRYSTVKVSFNDIPTTAINAIETVAVVFNLQSQAMTFYKAGIAVPVTGVTLNKTTTILAVAATETLTATVAPANATNKSGAWSSSAPTKATVDPVTGVVTGVAAGSVNIIYTTADGAKTATCAVTVTA*	hallmark_hmm	common_virus	C218	24420	3262358	3286778	GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote_CDS_0037	shell	direct	high	920	0.999	GCA_000834845.1_03273
GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote	cenote	CDS	3286466	3286777	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C218	24109	24420	GCA_000834845_1_1_2984	GCA_000834845_1_1_2984	+	4501786	.	PFAM:PF08748.10	tail-assembly-chaperone	MAVKFTLVPSPTFKVDVTIPRAGLDDGILTFTFRHMPVNEVINMEKVEGQSGLDFAEKFIEGWALPEVFSRENLEVLANNYPKAIEAIVGAFYRELLGNREKN*	hallmark_hmm	common_virus	C218	24420	3262358	3286778	GCA_000834845.1|CP009935.1@region_3262359_3286778@tool_cenote_CDS_0038	shell	direct	high	311	0.997	GCA_000834845.1_03274
GCA_000834845.1|CP009935.1@region_3478530_3496777@tool_cenote	cenote	CDS	3478529	3479269	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C224	1	741	GCA_000834845_1_1_3154	GCA_000834845_1_1_3154	+	4501786	.	.	hypothetical protein	MDQQNTHIGILAGNSRVYLDNNGMVAIEAQLNAFDAALRLARQSLDSGNLLPKLSVAFDHLGIFRLQFLTENLSNAQKRRPRLSHLHPLIQQVFLPIAEKYQIDLSDIRAIHEDSARQHLVHILATQDIPERLTRRMLTGAASRPNGDTHNETPTQKLTCAAITKEYFERAASDHQDPQAVLEVFFENSPWSRSLAYVRGLQLSHLLGVPAAIRLNLVNEAGEVSRGEKIIAQFTSAPKKPLSSRS*	.	hypothetical_protein	C224	18248	3478529	3496777	GCA_000834845.1|CP009935.1@region_3478530_3496777@tool_cenote_CDS_0001	persistent	direct	high	740	0.999	GCA_000834845.1_03459
GCA_000834845.1|CP009935.1@region_3478530_3496777@tool_cenote	cenote	CDS	3479286	3480485	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C224	758	1957	GCA_000834845_1_1_3155	GCA_000834845_1_1_3155	+	4501786	.	COG1104	Cysteine sulfinate desulfinase/cysteine desulfurase or related enzyme [Amino acid transport and metabolism]. 	MYSQNPPIYLDNNATTALDPAVLQAMMPYLTHAYGNAASKSHPFGWEASQAVQRARTLIATAINAVSPADIIFTSGATESINLAILGLQYQGNWGHIITSMIEHKSVLDCCAKLADSGVSVTYLQPQRDGIVSLDTLFQAIRPDTRLVSIMTANNETGTLQKVAEIGALCRDKGILFHTDATQAFGKIALDMQRMNISMATFSAHKVYGPMGVGALYVNTADPHLMLSPLIVGGGHERGLRSGTLNVPGIVGFGRAAELAMENMSVESARLCDLRNRLRQHILDTVPNVQVNGHLTECLPGVLNVSFEGIDADSLLLELSDVALSSGSACTSDQQIPSHVLQALGASDEQIRGSVRFGLGRFNNESEIDYVCQRLENTVKTLRSMAPLSSATTTNETGV*	mmseqs_cdd	nonviral_gene	C224	18248	3478529	3496777	GCA_000834845.1|CP009935.1@region_3478530_3496777@tool_cenote_CDS_0002	persistent	direct	high	1199	0.999	GCA_000834845.1_03460
GCA_000834845.1|CP009935.1@region_3478530_3496777@tool_cenote	cenote	CDS	3480489	3481661	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C224	1961	3133	GCA_000834845_1_1_3156	GCA_000834845_1_1_3156	+	4501786	.	cd17489	Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli membrane proteins, YfcJ and YhhS, Bacillus subtilis uncharacterized MFS-type transporter YwoG, and similar proteins. YfcJ and YhhS are putative arabinose efflux transporters. YhhS has been implicated glyphosate resistance. YfcJ-like arabinose efflux transporters belong to the bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	MRKTSSLFLLFGTLFSAGGYGATFLISAWFHSQGGNDIDAGATLGMALFGTLIGVPLVGWFAGKLDASRLAALAALIQSCGYFLLGSLSGGSGYLPHVAALLIGLGWGMFYIGGPMALSERLTDTERGPGFTRFSAFQMTGICGSPILLTIAVVQGGIPIQAAFLLVGVMGVFASILLMIFGTREPLIRHENSLRPWVKKITVLAKSGVIRPIVMVCLGGAVFSGMMSFQDSLTDGSLASASTFFAVHATTAVVSRLLLAHKLSSWPRTPLVAVLLCCLMIGLVCLLGIPTHVSFQIAAAMLTGAGYGLLYPVIQTWAVNESAPENRHAALTWFVVAYFVGIFGFPPFGGWVLVTVGKVWFIWVLATLATLELVTAIVKWPQTTHRPLSS*	mmseqs_cdd	nonviral_gene	C224	18248	3478529	3496777	GCA_000834845.1|CP009935.1@region_3478530_3496777@tool_cenote_CDS_0003	persistent	direct	high	1172	0.999	GCA_000834845.1_03461
GCA_000834845.1|CP009935.1@region_3478530_3496777@tool_cenote	cenote	CDS	3481966	3482778	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C224	3438	4250	GCA_000834845_1_1_3157	GCA_000834845_1_1_3157	+	4501786	.	PFAM:PF00872.17	Transposase,-Mutator-family	MDEKKLKALAAELAKGLKTEADLNAFSRMLTKLTVETALNAELTEHLGHEKNTPKSGSNTRNGYSSKTLLCDDGEIELNTPRDRENTFEPQLIKKNQTRITQMDSQILSLYAKGMTTREIVATFKEMYDADVSPTLISKVTDAVKEQVAEWQNRQLDALYPIVYMDCIVVKVRQNGSVINKAVFLALGINTEGQKELLGMWLAENEGAKFWLSVLTELKNRGLQDILIACVDGLKGFPDAINSVYPQTHIQLCIIHMVRNSLKYGVMEGL*	common_virus_hmm	common_virus	C224	18248	3478529	3496777	GCA_000834845.1|CP009935.1@region_3478530_3496777@tool_cenote_CDS_0004	persistent	direct	high	812	0.999	GCA_000834845.1_03462
GCA_000834845.1|CP009935.1@region_3478530_3496777@tool_cenote	cenote	CDS	3482756	3483175	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C224	4228	4647	GCA_000834845_1_1_3158	GCA_000834845_1_1_3158	+	4501786	.	PFAM:PF00872.17	Transposase,-Mutator-family	MVSWKDYKAVTSGLKMVYQAPTEEAALMALDKFAEAWDDKYPQISKSWRTHWENLNTFFGYPPDIRKAIYTTNAIESVNSVIRAAIKKRKVFPTDDSVRKVVYLAIKDASKKWSMPIQNWRLAMSRFIIEFGDRLSDHL*	common_virus_hmm	common_virus	C224	18248	3478529	3496777	GCA_000834845.1|CP009935.1@region_3478530_3496777@tool_cenote_CDS_0005	persistent	direct	high	419	0.998	GCA_000834845.1_03463
GCA_000834845.1|CP009935.1@region_3478530_3496777@tool_cenote	cenote	CDS	3483396	3483815	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C224	4868	5287	GCA_000834845_1_1_3159	GCA_000834845_1_1_3159	-	4501786	.	PFAM:PF02413.16	tail-fibre-assembly-protein	MKKLNKLDSDGFYIEDYIDGYLPKNWTADLVGDGYYKAQYQNADIDPDTGEWTGGVWAETSGPSTIDISAQKAEFVTQAKLKKSKLISDASDRIEILKDRIELGQDRAAELKLWKSYRIALDDIDVSAAPDIEWPLKPE*	hallmark_hmm	common_virus	C224	18248	3478529	3496777	GCA_000834845.1|CP009935.1@region_3478530_3496777@tool_cenote_CDS_0006	shell	direct	high	419	0.998	GCA_000834845.1_03464
GCA_000834845.1|CP009935.1@region_3478530_3496777@tool_cenote	cenote	CDS	3483826	3484743	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C224	5298	6215	GCA_000834845_1_1_3160	GCA_000834845_1_1_3160	-	4501786	.	UniProt:tr|A0A0N8LSN6_CITFR	Tail-protein	MAWYRSGTVTSEAAQNIVTGTGTQWANNVMGVAPGMALFIPDSAGNTLIYEILAVDSNTQIRINGNIKESVADSSYAIMTTVSNSYSALARETSAQLAMYQQLLKNWQQITTGTGDVNIIAPDGSVVIIPSLNSLMPKSGGAFTGPVSMFHDATDPLEPVTFQQFKQTGGELATQMTQLASRTTTLEADAFTASRIANTPWIPLTLQNGWLPLQGYHNAIYRKINGVVYMEGVITGGTHADGTVIAILPDGYRPALDQVSVQPISGSTLGGITAQSRIALWTDGALRIYGITGNGDIGIKSSWVI*	hallmark_hmm	common_virus	C224	18248	3478529	3496777	GCA_000834845.1|CP009935.1@region_3478530_3496777@tool_cenote_CDS_0007	shell	direct	high	917	0.999	GCA_000834845.1_03465
GCA_000834845.1|CP009935.1@region_3478530_3496777@tool_cenote	cenote	CDS	3484760	3485758	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C224	6232	7230	GCA_000834845_1_1_3161	GCA_000834845_1_1_3161	-	4501786	.	pfam20051	Family of unknown function (DUF6453). This family of uncharacterized proteins is mainly found in phages. It may represent structural phage proteins. There are several conserved motifs: FxxI, GxxxxP and FSxxxxP, and also 7 additional conserved Glycine residues.	MAEPILYISPSDGGKGINMTSGTRLLKFLGYYDTNGTGNPPSAVLNGYTGGALYLVPSDFGGVIQPLGSSAVWAWWVTGYSMSGNRITFTTSESNKGWVRFSAFEIPQSPAVGTYGLLLQDSANFMAITESSELGFCTWRGNVNISGVWSIPAGIQNRDNAIVFANWDNPNVSLYYDSANKTINCYQINSTGSTSSGSVNANICVFTTGFFPEPPSPGTAGLAIFNTSGQCTYSSRYAPLIIGGNMALSNQPNVWVNTGITRPMIPLPSAGGLPAGNINNGNYRGWYKSAMRMSGSSITAGQGAYVNSSNTLDYPYGISPISIPVLNADIYF*	mmseqs_cdd	nonviral_gene	C224	18248	3478529	3496777	GCA_000834845.1|CP009935.1@region_3478530_3496777@tool_cenote_CDS_0008	shell	direct	high	998	0.999	GCA_000834845.1_03466
GCA_000834845.1|CP009935.1@region_3478530_3496777@tool_cenote	cenote	CDS	3485758	3488961	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C224	7230	10433	GCA_000834845_1_1_3162	GCA_000834845_1_1_3162	-	4501786	.	PFAM:PF13550.5	tail-protein	MARKPIKGRKGGGSNATTPVESPDSIQSTARAKILIALGEGEFAGGLDGTNIYLDGTPIKNSDGTSNFTGVTWEYRPGTQAQDYIQGMPNVENEITVNTELKSDTPWVRSITNTQLSATRVRLGWPSLQRQADNGDVGGYRIEYAVDVATDGGAYQTLLDTAIDGKTTTLYERSHRINLPKATAGWQVRTRRKTANANSGRIADKMNVEAISEVIDAKLRYPNTALLYIEFDATQFQNIPIISCEPKGRIIRVPTTYDPVTRTYSGVWDGSFKWAHTNNPAWVFYNIVLADRFGLGHRIEVSQVDKWELYRIGQYCDQLIPDGRGGSGTEPRFTCDVYIQSQAEAFTVLRDLAAIFRGMTYWGNNQLCTLADMPRDVDYIFTRASVIDGRFTYGGGSEKKRYTTAMVSWSDPANNCQDAIEAVSDNDLVRRYGVNQLDMTAIGCIRQTEANRRGRWALLTNSKDRTVNFNVGLDGAIPLPGHIIGVADDMLSGRKMGGRISSVSGRNITLDRVADVKAGDRLLVNLPNGVAQGRTVQVVNGKVITVTTAYSEVPAAESGWSVDADDLAIQQYRVTGISDNDDNTYSISSVQHDPDKYERIDTGARIDERPISVIPPGVQPPPTNVVIDSFSALSQGLAITTLRVTWEPAASAIAYEAEWRRDNGNWISAPRTSAQGFQVEGIYAGQYQARVRAINPSEISSIWANAQETTLNGKEGNPPMPVGFTATGILFGITLNWGYPEGAEDALKTEIEYSLSADGTDAMLLSDVPHPQRNYTMQGLRAGQVFWFRARIVDKSGNQSPWIDWVRGMSSTDTSAILEAIGDDFINNTVAGQQLINDDFMNAEGILETAKANNASIWQQWAQHGENKAGVIHLTTTVADAERAFAEFETLVTATFEDQTAAIDQKMTAVVDANGASATYSLRAGLNYNGQFVSAGMVIGAEFINGVAKSSIGFTADQFILLSGPTGNLFSPFAVVNGQVFMNDAFIAKASIGRGKITDTLDSDNYVQGISGLKLDFKNGNAEFNNVNLRGNITMDNTINGIRTIVDYRGQRTYHANGQPAIICGYF*	hallmark_hmm	common_virus	C224	18248	3478529	3496777	GCA_000834845.1|CP009935.1@region_3478530_3496777@tool_cenote_CDS_0009	shell	direct	high	3203	1.0	GCA_000834845.1_03467
GCA_000834845.1|CP009935.1@region_3478530_3496777@tool_cenote	cenote	CDS	3489137	3489358	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C224	10609	10830	GCA_000834845_1_1_3163	GCA_000834845_1_1_3163	+	4501786	.	.	hypothetical protein	MSKYTISSITELSQLQDLKPPFHTNITVNLRTAAGQTAVSFDPHGMNIMNMTVSEIGEAAYKIFIDRLSANNK*	.	hypothetical_protein	C224	18248	3478529	3496777	GCA_000834845.1|CP009935.1@region_3478530_3496777@tool_cenote_CDS_0010	shell	direct	high	221	0.995	GCA_000834845.1_03468
GCA_000834845.1|CP009935.1@region_3478530_3496777@tool_cenote	cenote	CDS	3489327	3489491	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C224	10799	10963	GCA_000834845_1_1_3164	GCA_000834845_1_1_3164	-	4501786	.	.	hypothetical protein	MTQEQRIEALEQQVSDMQQQITSIQEAVICYQDLNQLNFNELRAAICCLQKADQ*	.	hypothetical_protein	C224	18248	3478529	3496777	GCA_000834845.1|CP009935.1@region_3478530_3496777@tool_cenote_CDS_0011	shell	direct	high	164	0.994	GCA_000834845.1_03469
GCA_000834845.1|CP009935.1@region_3478530_3496777@tool_cenote	cenote	CDS	3489533	3490153	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C224	11005	11625	GCA_000834845_1_1_3165	GCA_000834845_1_1_3165	-	4501786	.	PFAM:PF06805.11	tail-assembly-protein-I	MTLFAQEVMTPIKLSGSLAKMFGRDHQRLVGSSGEVIKALCVTIPGFEQYLMTAKQRGLTFAVFKNKRNVGKDELELASGGQEIRIVPVIIGSKRGGLFQTILGVALIGMATFMSGGLAVAFGAGGVWGGAMAMMGASMALGGVIQMLSPQQSGLAMRQSPDNKPSYAFGGPVNSTAQGNPVGVLYGKRRIGGAVISAGIYAEDQM*	hallmark_hmm	common_virus	C224	18248	3478529	3496777	GCA_000834845.1|CP009935.1@region_3478530_3496777@tool_cenote_CDS_0012	shell	direct	high	620	0.998	GCA_000834845.1_03470
GCA_000834845.1|CP009935.1@region_3478530_3496777@tool_cenote	cenote	CDS	3490209	3490559	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C224	11681	12031	GCA_000834845_1_1_3166	GCA_000834845_1_1_3166	-	4501786	.	.	hypothetical protein	MKQIIISLVVLVLAGCSSISEMRERGPHSEFKSKKEAQVLATCITMEWQKFKVVGGGATDVSMSLLPNGFSVFTPNQTEVADVHNIDNGSTVNFFVQTGLFDWRINQRVDGIKKCI*	.	hypothetical_protein	C224	18248	3478529	3496777	GCA_000834845.1|CP009935.1@region_3478530_3496777@tool_cenote_CDS_0013	shell	direct	high	350	0.997	GCA_000834845.1_03471
GCA_000834845.1|CP009935.1@region_3478530_3496777@tool_cenote	cenote	CDS	3490567	3491103	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C224	12039	12575	GCA_000834845_1_1_3167	GCA_000834845_1_1_3167	-	4501786	.	PF11023.8	Zinc-ribbon containing domain	MEIIIAAIFLGLIPAIIANSKGRSFGLWWLYGALLFIVALVHSIVMSSDNKTIEQKQIDNGMRKCPFCAELIKPEAIKCKHCGSDVKPADEVISSNLEYGFNPSDLPFDSFFIRRKVGFDINDHAVMEMVNKLKRINPGMHPMNIQTRYANDFDKLKNKLPSSIRDEFDARYKYWMDK*	hhsuite_tools	hypothetical_protein	C224	18248	3478529	3496777	GCA_000834845.1|CP009935.1@region_3478530_3496777@tool_cenote_CDS_0014	shell	direct	high	536	0.998	GCA_000834845.1_03472
GCA_000834845.1|CP009935.1@region_3478530_3496777@tool_cenote	cenote	CDS	3491217	3492224	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C224	12689	13696	GCA_000834845_1_1_3168	GCA_000834845_1_1_3168	-	4501786	.	PFAM:PF10547.8	P22_AR-repressor-domain-protein	MNSLAKSNANNTQTSAISQFHFDTHAVRVLSIHNEPWFVAADLCRVLELSNPTKSIMNLDDDEKALTSIQGLSRGNEEANIVSESGMYTLILRCRDAVKPGTIPHRVRKWVTAEVLPAIRKTGSYDSPRKATKKALPGKITIEQQEAVKQLVMNRGKALPKENQAKAMITMWSALKTHFGCSYKEISEDQFTEALSLAARVTIEGEFLGKQEALPVPKLEVSLPIQWWFDNNPAVKYGNRENITKMKQNHFCFTPSLNVTIDMLCGDSDTSAAIQLINIMEMAGYDVSAPKAEIVAMRKHIANVEYGMKAISDACIRAKNKKVIFRGKKADITIN*	common_virus_hmm	common_virus	C224	18248	3478529	3496777	GCA_000834845.1|CP009935.1@region_3478530_3496777@tool_cenote_CDS_0015	shell	direct	high	1007	0.999	GCA_000834845.1_03473
GCA_000834845.1|CP009935.1@region_3478530_3496777@tool_cenote	cenote	CDS	3492298	3492465	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C224	13770	13937	GCA_000834845_1_1_3169	GCA_000834845_1_1_3169	-	4501786	.	PFAM:PF05534.11	Arc-like-repressor	MQKAKDMYQRKIRFPEEICLAIQNNGENQSRQFNTEVIYQLRKVYGLIEKRNDEA*	phrogs_hmm	hypothetical_protein	C224	18248	3478529	3496777	GCA_000834845.1|CP009935.1@region_3478530_3496777@tool_cenote_CDS_0016	shell	direct	high	167	0.994	GCA_000834845.1_03474
GCA_000834845.1|CP009935.1@region_3478530_3496777@tool_cenote	cenote	CDS	3492589	3493020	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C224	14061	14492	GCA_000834845_1_1_3170	GCA_000834845_1_1_3170	+	4501786	.	PHA01513	Mnt	MSREDPQLRIRLPVELKEKIEGSAKENNRSMNAEIVQRLDASYLSEFPEDGVLSAKDALQIANNAKESLSNLIFTRTFAEISKKVRIGHKSFCIDLDDLELEVLSDDDFNYVLKRTFSRLTELGYILSEKSLDSGGFMIEIPE*	mmseqs_cdd	common_virus	C224	18248	3478529	3496777	GCA_000834845.1|CP009935.1@region_3478530_3496777@tool_cenote_CDS_0017	shell	direct	high	431	0.998	GCA_000834845.1_03475
GCA_000834845.1|CP009935.1@region_3478530_3496777@tool_cenote	cenote	CDS	3493099	3493623	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C224	14571	15095	GCA_000834845_1_1_3171	GCA_000834845_1_1_3171	-	4501786	.	.	hypothetical protein	MASGVKEFSLPGFVTPHGYRLLVSVNGEHYRLVTDAAIPETVYAVKLAFLEHIVPTRKTCTQILVWRTVQPQHDSAVHGLPQEFFRHFLTQYSIVVSDSEQTNEGRRFWERMIAWAIQAEGHYVYVSNGSEEDRPLTFMTNWDDFYGTWADFCWGDDRDCHCHRLFVISTEQLH*	.	hypothetical_protein	C224	18248	3478529	3496777	GCA_000834845.1|CP009935.1@region_3478530_3496777@tool_cenote_CDS_0018	shell	direct	high	524	0.998	GCA_000834845.1_03476
GCA_000834845.1|CP009935.1@region_3478530_3496777@tool_cenote	cenote	CDS	3493978	3494688	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C224	15450	16160	GCA_000834845_1_1_3172	GCA_000834845_1_1_3172	-	4501786	.	cd08073	Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) found in proteins also containing NlpC/P60 domains. This family contains bacterial MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains at the N-terminus of NlpC/P60 phage tail protein domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation.  The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.	MRDKTLKAILAHAEAEHPKECCGVVAQKSRVEKYFPCENLATNPTEQFHLDPTGYVEAEDWGTITAIVHSHPDATTQPSELDMAQCDNNELPWHIVSWPEGDLRTIQPRGDLPLVGREFVLGHTDCWGLIMSYFRQTHDIELKDYRVDRHWWESGTENFYMDNWYECGFREFSGPAQPGDLIIMQVSAPVANHGGILLEDGMLLHHPYGQLSQRVPYGGYWQERTMKVVRYEISQL*	mmseqs_cdd	common_virus	C224	18248	3478529	3496777	GCA_000834845.1|CP009935.1@region_3478530_3496777@tool_cenote_CDS_0019	shell	direct	high	710	0.999	GCA_000834845.1_03477
GCA_000834845.1|CP009935.1@region_3478530_3496777@tool_cenote	cenote	CDS	3494691	3495443	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C224	16163	16915	GCA_000834845_1_1_3173	GCA_000834845_1_1_3173	-	4501786	.	PFAM:PF05100.11	minor-tail-protein-	MTINTDLQRLEPGNRVRLYEVDGSKFDGPLLRFHADTLPHTPEEIAAANGDESKLPAKSIWWQGEEYSAWPVQVEGIEMSSDGQSAQPKLSVANLDGTITALCLAFDDMVQAKVIVHDTFKHYLDAVNFPEGNSDADPEQEKVQVYYIDSKSTETNEIVEFTLSSPADLQGLLIPTRQIHSLCTWCMRGDYRSGNGCDYAGTLYFDEKGNPTDDPSKDKCSGLLVDCKKRFGADNPLPFGGFPGAALIKR*	hallmark_hmm	common_virus	C224	18248	3478529	3496777	GCA_000834845.1|CP009935.1@region_3478530_3496777@tool_cenote_CDS_0020	shell	direct	high	752	0.999	GCA_000834845.1_03478
GCA_000834845.1|CP009935.1@region_3478530_3496777@tool_cenote	cenote	CDS	3495563	3496021	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C224	17035	17493	GCA_000834845_1_1_3174	GCA_000834845_1_1_3174	-	4501786	.	PDB:2XO6_A	TN-transposase	MRDEKSLAHTRWNCKYHIVFAPKYRRQVFYREKRRAIGSILRKLCEWKNVNILEAEYCVDHIHMLLEILPKMSVSGFMGYLKGKSSLMLYEQFGDLKFKYRNREFWCRGYYVDTVGKNTARIQEYIKHQLEEDKMGEQLSIPYPGSPFTGRK*	common_virus_hmm	common_virus	C224	18248	3478529	3496777	GCA_000834845.1|CP009935.1@region_3478530_3496777@tool_cenote_CDS_0021	persistent	direct	high	458	0.998	GCA_000834845.1_03479
GCA_000834845.1|CP009935.1@region_3478530_3496777@tool_cenote	cenote	CDS	3496387	3496776	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C224	17859	18248	GCA_000834845_1_1_3175	GCA_000834845_1_1_3175	-	4501786	.	PRK00522	thiol peroxidase. 	MTQTVHFQGNPVSVAGKLPQIGDKAKDFTLVAKDLSDVALSSFAGKRKVLNIFPSIDTGVCAASVRKFNQLAGELENTVVLCISSDLPFAQSRFCGAEGLSNVITLSTLRGADFKQAYGVAITKALWQV*	mmseqs_cdd	nonviral_gene	C224	18248	3478529	3496777	GCA_000834845.1|CP009935.1@region_3478530_3496777@tool_cenote_CDS_0022	persistent	direct	high	389	0.997	GCA_000834845.1_03481
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	136	405	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	137	406	GCA_000834845_1_3_1	GCA_000834845_1_3_1	+	95352	.	.	hypothetical protein	MSPLELLGVPLTMFWMLSRNIDRLRAEEDVRNLQVARAAQADGEGVKAFMEGLQLRIGRPVVTDKVYDPRKDKADPDAKEQLMQIFGRG*	.	hypothetical_protein	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0001	shell	direct	high	269	0.996	GCA_000834845.1_04562
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	413	4978	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	414	4979	GCA_000834845_1_3_2	GCA_000834845_1_3_2	+	95352	.	PFAM:PF09718.9	tail-tape-measure-protein-	MSQNVEFILSLEDKQFTASIDRAGKLLTRFGEQATKPAQKINNLERSLGSVSRIIGVLESKLDVTAEKLQDVAAGFELVSDVSRKTRGSITSLNSGLKTLIERVDTTTSSVNKLTTSLRKVQSELNEFSDWATFAGKSASRFGTEVKEASASVSGMNTRLNTTTKRLSNWGVTTSQAAEGLKKVRDQMDAVIGRQQLISKPVRVRTSSYGDGGGGRHSGSYGHGGRSAESGVFSGLRGNIFLLGEIGDAARTVTDILFGWQKPIIEAASEMERMRVMLRGLNKDKANPGKAAAEDMQYIVDMAQNAPFAMQALTDSFVKFRSAGLDPTDGSLKALVDSVARFGGDSELLKRAAVAVQQMSGKGVVSMEELRQQLGEAVPNAMKAMADAAGITMGELTKAVSTGTVEAKQALSLMFVGLRAENENAAKDMMQTYTGALAQLQTSFTLFADRVGQAGYLDSLTKGMKELASIMNSAEGISFANSLGSGLSTAIDGLRELAQWLAKNQELVISLGKVVAAMVAFKLMRAGIAGVIGTAGQMVNTFTKMSTVLQAPFNLGATAVTRFNRAARMGLAPIPSLIFAIRGAITGLQGAFAGLTAFIAANPIGAAFTVATVAVAGLITYMTMLRSETSKVVDEIRKIPEAMTAAKRAQMAARAAELEKQIQRDQQALKTGESVNYYSTAAGPVAVKESKEVVEARLKKNQEEYERTTGTMALGDGAVAKRLAKEAAESQIEKIRADNQVFSATFVKARQEALDKIQKINDDKSLSDDEKNKLLAPLREKVNKSYLEPAQKLVYDLSSRKNATEKQIAHFSDMLEKAKKEGNTEQVQKLQGSIRGYQEHLEAVAQELTQAEFERDSAAKTGKGVMSNQGTVLGLGTTDKAAQKALAQYMRNQMDSATYQRTLPDGTAMLDFEGKPIIGPKQLKTQLNLQKASSASSLEKMSDEERAAAIAALTKAREQDAAAAEKAGQRTANASQRAARKEENAQRKLAAGYQKALDKADQLMGQMGESSKATVSFDQSLRDTTKSLTELANAVPNEFITQEMIDKAKSRLADLANASDDYREMFNRRNVEQMISTWAPESDSIISAGYKPSREEKVADFNDTYNRNLKALMDLRDQASDPKIVALYTKQINQLVAAGNTALIKETGTATQKLALEYENLAEQLENSWSNLFSNMTDTLTDFVMKGKLDFSSLAESILRDITNMVVKTQITLPLMNMLGMGTTAAGSSQSGNLLSGVASAVANQGVRMNAVNGDKSVGEATKETSSSVSGLGQTTQQTTSAIGSATNAIGNWVNGLFTSTEAKDAETKAVKTSIFSMQNLSSVTGALSAAFAMLGANMSGSGNKWLSFGATIASGLVSAWAGGGFDNIGSGSSGSNSGFNNLTGSASDGTGGIPAIPKFAKGGIFGKDGVVPLRAYQKGGIADSPQLALFGEGDMNEAYVPLPDGRSIPVTLNAEGVKGGGVFSPVSIEINVNSDGSVSENSNSEGAWSQAAQRMKAIALETIAQEKRPGGSLNPNSQRN*	hallmark_hmm	common_virus	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0002	shell	direct	high	4565	1.0	GCA_000834845.1_04563
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	5020	5355	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	5021	5356	GCA_000834845_1_3_3	GCA_000834845_1_3_3	+	95352	.	PFAM:PF05939.12	minor-tail-protein	MERLTFNWYPDYESEKTVKPNVTVLNFGDDYEQRQAKGLNRIKEEWSLTFTRSYDVINAVDDFLTARAAVESFYWTNPRGKKMVVVCDSHTVKRYQGYLVLTATFRQIYEG*	hallmark_hmm	common_virus	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0003	shell	direct	high	335	0.997	GCA_000834845.1_04564
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	5445	6143	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	5446	6144	GCA_000834845_1_3_4	GCA_000834845_1_3_4	+	95352	.	PFAM:PF05100.11	minor-tail-protein-	MGIKADIQSLSPSALIELFELDMSNTTSGGKLFFHAGTNELMEPVVWQGVSYEPWPIKASGFDKTGQGTLPRPKIQVSNFAGTVSAEVQANDDLVGCRIIRKMTLARFLDAANFKDGNPTADPNQHFPDEMWFVEQKTLETHEVVEFELSSVFDLMGVQLPYRQIIKNTCPWKYRGPECGYTGPYFDKNNQQTTMSGADYCTKRYDSCNARRNYFANGVIHFGGFIGATRYG*	hallmark_hmm	common_virus	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0004	shell	direct	high	699	1.0	GCA_000834845.1_04565
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	6136	6933	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	6137	6934	GCA_000834845_1_3_5	GCA_000834845_1_3_5	+	95352	.	cd08073	Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) found in proteins also containing NlpC/P60 domains. This family contains bacterial MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains at the N-terminus of NlpC/P60 phage tail protein domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation.  The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.	MGNRAFPELGSDIMQEIYLTAIKRYPNEACGFLVRTTGEKYRFMEARNVSENPENTFVMHADDIIAAEDAGDVVAIWHSHTDESADASDADRAGCEATEVPWLILAVRKNVEGDAPFHFSEMNVITPDGFEMPYLGRPYVFGVFDCWMLCRDYLKREFNVELNPNPHLHIPSWYTGDTDILDQNYRNEGLVRLAPGTEPQRGDVFFIQYGKMPDHCAVYIGDGMILHHQIDRLSCRAYYGGMYQKHTTHHLRHRDLLKGDETCLS*	mmseqs_cdd	common_virus	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0005	shell	direct	high	797	0.999	GCA_000834845.1_04566
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	6921	7508	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	6922	7509	GCA_000834845_1_3_6	GCA_000834845_1_3_6	+	95352	.	PFAM:PF06805.11	tail-assembly-protein-I	MSELVHVQLGGPMARHFGRHWHLKVRNTKQALDLVEANRPGLKAWMKRNMKTYDKYHIQITNKQGHKWSVDESEFQMMGQSDNIAKIRITPVPRGSGGKAFGWFQTVVGALVMVASFWFPALAPLGLSLMMGGISQLISPQATNDSVRQADNSNSFYFDGPQNTTNQGNPVQLIYGEEILVGSQVVSSSITIDQL*	hallmark_hmm	common_virus	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0006	shell	direct	high	587	0.998	GCA_000834845.1_04567
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	7530	12161	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	7531	12162	GCA_000834845_1_3_7	GCA_000834845_1_3_7	+	95352	.	PFAM:PF13550.5	tail-protein	MEQFKKKRLPLLIAGAGGKKSSGSSRTPVEADDTVNSRAMASILDLLGEGVIGGLVDGAKSIFVDDLPILNEDGSSNFSGITWDFRDGSQDQTPMAGFDFVETPKSVNIQLKRMHDVTIAIDNDEADRVRVILKFPSLRSIDKKTGDTNGTTVKYKFQIANGDNAFKDAIAEGESASEIALTAKKTGVYYRSYELKLPKPGRAYKVRVLRLTDDSNTQYIFNDTWVDSIGEIVDTPMNYPNSALVGLKVNSEQFGSSMPSRSYLVRGLKIRVPSNYDEHTNTYIGVWDGTFKLLSSSNPAWILFDLLTNARYGLGQYVSESMIDLGQIYQIGRYCDEEIDNGFGGKEKRFAINTQITSRQDAYRLIQDIAGAFRGMVFWAGGMVNVMQDSPSDPVMMFTNANVKDGMFSYKGSARKDRPSVALVTYNNKEDGYKQNIEYVEDQEAMRRYGERKTEVVAFGCTSRGQAHRVGLWLLYTARMESDVISFTAGLDASFLMPGETVLIQNKYRAGKRNSGRIVAFTKNSITLDAPVTLNKAGSYIRILNQEGEIVERDILETGEDITKVTFSKALNSGDMPVMNGVWTITEPDLEPMRVRVINVAQGEAQGTFNVTVVQNNASKYEAIDNGATLIPENNTVLDPTYSKPTNLQVTEGTYISSPGNLSIKLVATWEGKSAEYWISWRRSDENNVSNWQSARVTEEQFEILNIAENGQYDIQLYAVSFSGKKTDIISTVYQVKGTMTPPGSPTSLTAVGDYRNVILNWVNPDSIDLDHINVYASQTNDLETAKLVAEAASTTFTHAGLGDSETWYYWVRAVNKRGMLSPPNSNLGTEAMTRDVLSFLTGKITSSELGQELLEEIDAKASQDAVDAINKQMEESLKELDQSVADLDSKLEDTSGRLEQVQNDLKNEVSGTLDKVNDALQQVEDSNAALVELQETVSEQGKAIAGAVEAAHAALDNASALIAEEREARVEGDKANAKQIEAMKSSVDDSVAAVEEMKKTVAEVERASAEASTNIEALAKTNIDLALRQDEDQHKQMVNNAKIATTQKTFADDMSAMASKVEEIRAEIGEDIRASILEETTARVEADKTIATHISKLEAQLNDDISAAIVSEQEARATADETLSRQITTLQAKVEGDISAALTEEQIARATADEALSKQITQLKAQNGEDIKAAVAEETQARTDADGALASQISSLKAQTAEDIKAAVDTETKARTDADSALAGQITNLQAQTGKDINAAITSEATARANADGALGKRIDTVKAEVDGNSALIQQQAKAIADTDKKVSAAWTLKMETSTSGGQKYVAGIALGIDSTGLSQFLVQADRFGLVNSVNGKITTPFVIENSVAYMNGAYIKDGTITNAKIGNVIQSNDYAAGSRGWIIPKDGSPEFNNGTFRGNIAANSGTLNNVTIAQNCQILGKLHANQIDGDIVKAYMVNGSSIYIAPQTFARIIYVVNGYYYNKPSEDINTYSWSRITEYTVNGVKQQIYGMREGSKNQSGLFGYYNLPAGQSATVDVYTWHRQRKYDHRVNEPYLILVFKA*	hallmark_hmm	common_virus	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0007	shell	direct	high	4631	1.0	GCA_000834845.1_04568
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	12179	12796	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	12180	12797	GCA_000834845_1_3_8	GCA_000834845_1_3_8	+	95352	.	PFAM:PF14301.5	tail-fiber-protein	MDETPVISAVRNAVRSLSGGISCEIQFDGLVMDDGVTPLFLPYTLSESDTSPLAKKILEALESESSGGIAPYPEQGEYIERLKVEKLAVINDWRLRQECRTVYFEWNGHRWDANDISKERLDISLKAAESGLPDNFFWTDADNNDVPVTQEQLKELGMRMTQTLFDRKFGAHERQRVMKKDILEMCDPELIKNYQVGWGDGSARR*	phrogs_hmm	common_virus	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0008	shell	direct	high	617	0.998	GCA_000834845.1_04569
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	12877	15765	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	12878	15766	GCA_000834845_1_3_9	GCA_000834845_1_3_9	+	95352	.	PDB:4A0U_B	Tail-fiber	MWYREGTITFTQGGDALSGTGTYWNVTANGVLPGMIVIGPDNKLYEIKRVISDTSLILAEPYTGETQKEVPCRIITTYEGDLTQFSARFTALMTRMSADSKTMRSWLTAVDEVTLEREDGTEVTVKSLTQIVDEHNANQKWYTDNADAINAAGEKAREAAERALAAAQSSSEARAKADEAAQSSASASEYKTAAELSAAASKASEHGAAESAASSKASASAAKTSEDNSAASETNAAESKAAAALSASSSANSASEALQYAESAKTSKEAAAASEAAAANSENEARTSKDTAVAAAAEASANATSADASRHDVDTNKAEVSRMKDEVFAARDSTIQYSEEAKTAADTAAREAATKTSDQLLSAVKSEAEKANSASASAQGFADDAKRFRDEAQEIAEGSKVNDATTSQQGVVQLSSATDSESETLASTPKAVKTVMDAVALKAPIDSPALSGAPTAPTPAITAAGREIATAAFVASKVAQLVGSAPEALDTLNELAAALGNDPNFATTITNMLARKQPLDGTLTALSGRSPQGVIDYLGLLNTVNLAAGSIQKSQNGADIPDKRLFVKNIGAVSSARISFVKESGWYKLATVTMPQGASTALITLIGGAGYNAGLYDQAAISEIVLRSGNWNPVGITATLWQRSPAGAQGVAWINTSGDVYDIYVNVGQYSIDVIALSDCTNNASIVLFGTPEYVATKPASSTNGANYILYSSVLPPPESYPVGAPIPWPNDVAPSGFAIMQGQTFDKSVYPKLAAAYPSGVLPDMRGWMIKGKPTSRAVLSLEQDGIKSHAHNAAASSTDLGTKPTTTFDYGTKTSSGFDYGTKSSNSTGAHAHSLSGSTSSSGAHAHTVTAHTQYPRSTDSRNQNAVGKQYNTQQTTANAFNVWTSSAGDHAHSISGTAVSAGAHAHTVGIGAHAHSLSIGSHSHSVAIGAHSHTITIAACGNAENTVKNIAYNYIVRLA*	hallmark_hmm	common_virus	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0009	shell	direct	high	2888	1.0	GCA_000834845.1_04570
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	15762	15974	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	15763	15975	GCA_000834845_1_3_10	GCA_000834845_1_3_10	+	95352	.	.	hypothetical protein	MIILVFSAPVAEMADACTCEFGYSENVEIIYRSLEASAEFDCIVSATNSLVRWMGARMLNISGKVFTNSL*	.	hypothetical_protein	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0010	shell	direct	high	212	0.995	GCA_000834845.1_04571
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	16067	16675	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	16068	16676	GCA_000834845_1_3_11	GCA_000834845_1_3_11	+	95352	.	PFAM:PF02413.16	tail-fibre-assembly-protein	MTFKMTDKARTLKVYNLLEGTNEYIGVGDAYIPPFTGLPANCTEIEPPTTTEGFAAVFDFTKQEWSLEEDHRGKTLYSTETGEPVFIAELGPLPENVTYISPNGEYQKWDGSAWVKDEEAEKTALVGEAEQNKSVLMKNVSQQISLLQDAIDLDMATDEEKETLVALKKYRVLLNRVDTSLAPDIDWPILGNEEEDSANLIK*	hallmark_hmm	common_virus	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0011	shell	direct	high	608	0.998	GCA_000834845.1_04572
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	16809	17225	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	16810	17226	GCA_000834845_1_3_12	GCA_000834845_1_3_12	-	95352	.	PDB:4M4W_K	Replicative-helicase	MGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPFSQEEAKLFFQVIAKRYEKSAMILTSNLPFGQWDQTFAGDAALTSAMLDRILHHSHVVQIKGESYRLRQKRKAGVIAEANPE*	rep_hall_hmm	common_virus	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0012	persistent	direct	high	416	0.998	GCA_000834845.1_04573
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	17356	18282	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	17357	18283	GCA_000834845_1_3_13	GCA_000834845_1_3_13	-	95352	.	PDB:1BCO_A	Mu-Transposase	MVTFETVMEIKILHKQGMSSRAIARELGISRNTVKRYLQAKSEPPKYTPRPAVASLLDEYRDYIRQRIADAHPYKIPATVIAREIRDQGYRGGMTILRAFIRSLSVPQEQEPAVRFETEPGRQMQVDWGTMRNGRSPLHVFVAVLGYSRMLYIEFTDNMRYDTLETCHRNAFRFFGGVPREVLYDNMKTVVLQRDAYQTGQHRFHPSLWQFGKEMGFSPRLCRPFRAQTKGKVERMVQYTRNSFYIPLMTRLRPMGITVDVETANRHGLRWLHDVANQRKHETIQARPCDRWLEEQQSMLALPPEKRV*	common_virus_hmm	common_virus	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0013	persistent	direct	high	926	0.999	GCA_000834845.1_04574
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	18364	18885	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	18365	18886	GCA_000834845_1_3_14	GCA_000834845_1_3_14	-	95352	.	cd09860	FEN-like PIN domains of bacteriophage T3, T4 RNase H, T5-5'nuclease, and homologs. PIN (PilT N terminus) domain of bacteriophage T5-5'nuclease (5'-3' exonuclease or T5FEN), bacteriophage T4 RNase H (T4FEN), bacteriophage T3 (T3 phage exodeoxyribonuclease) and other similar 5' nucleases are included in this family. T5-5'nuclease is a 5'-3'exodeoxyribonuclease that also exhibits endonucleolytic activity on flap structures (branched duplex DNA containing a free single-stranded 5'end). T4 RNase H, which removes the RNA primers that initiate lagging strand fragments, has 5'- 3'exonuclease activity on DNA/DNA and RNA/DNA duplexes and has endonuclease activity on flap or forked DNA structures. Bacteriophage T3 is believed to function in the removal of DNA-linked RNA primers and is essential for phage DNA replication and also necessary for host DNA degradation and phage genetic recombination. These nucleases are members of the structure-specific, 5' nuclease family (FEN-like) that catalyzes hydrolysis of DNA duplex-containing nucleic acid structures during DNA replication, repair, and recombination. Canonical members of the FEN-like family possess a PIN domain with a two-helical structure insert (also known as the helical arch, helical clamp or I domain) of variable length (approximately 16 to 800 residues), and at the C-terminus of the PIN domain a H3TH (helix-3-turn-helix) domain, an atypical helix-hairpin-helix-2-like region. Both the H3TH domain (not included in this model) and the helical arch/clamp region are involved in DNA binding. The PIN domain belongs to a large nuclease superfamily. The structural properties of the PIN domain indicate its putative active center, consisting of invariant acidic amino acid residues (putative metal-binding residues), is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons. In the T5-5'nuclease, structure-specific endonuclease activity requires binding of a single metal ion in the high-affinity, metal binding site 1, whereas exonuclease activity requires both, the high-affinity, metal binding site 1 and the low-affinity, metal binding site 2 to be occupied by a divalent cofactor. The T5-5'nuclease is reported to be able to bind several metal ions including, Mg2+, Mn2+, Zn2+ and Co2+, as co-factors.	MNYLFVDGNSLGYYHQQSDKLHNGEMEVQAAFGFVKNVRRYASILHARPMILWDGFSDKRRDFYPEYKANRDDDPDMKKMKEGFAIQKPYILKMMTALGVNQLIAKDAEADDLAGMLVSRLAPQPTVDHIYLLTGDGDWLQLVRENVSWVSLREDAKHKQVNFEQFAELTGLL*	mmseqs_cdd	nonviral_gene	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0014	shell	direct	high	521	0.998	GCA_000834845.1_04575
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	18946	19974	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	18947	19975	GCA_000834845_1_3_15	GCA_000834845_1_3_15	-	95352	.	PFAM:PF08804.9	single-strand-DNA-binding-protein	MSKSLLDLLNKTRGDIASKRGNNVDLTRLKDGNNYLRIFPNKDDPNGVFFQTFGMHYVKHQNEEGKDVTTAYICEQHTHGHACQLCEMVMEGRARFKGNKAMEERINSMRATPRYLVNGVLSAREDFADAEKCQLIELPSTVFDDICKVMSEDIADDIGNPLSKEEGYAFLIKRTGSGRDTKYDVSPKRKVYKGDIPEKLWTTQHDLIAYANQADETRLLSTARTMGRLIGIAAPAATMSSPAISSAAKSAAAELPGFGSITGHTEGAAAVATAHTPAPESTSLVDEEILRAAEAEFKPETKPEKVKAPEAAAAASASASAAAASVPADEGLDDLLAELDAL*	phrogs_hmm	common_virus	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0015	shell	direct	high	1028	0.999	GCA_000834845.1_04576
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	20094	20525	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	20095	20526	GCA_000834845_1_3_16	GCA_000834845_1_3_16	-	95352	.	PFAM:PF11056.7	Recombination,-repair-and-ssDNA-binding-protein-UvsY	MSADIYEKIMSDLEFDRDNLEEVWRQQPRLLMEYGSKLARAEREVADAKLSLDAIEAKIYDNERKNLSMNGIKFNESVLEAKVRTNPQYLAKRQKLDDARHIADLYKHAVTAFSHRRDMIVQASKMAIVEIERLGAERFHSPR*	common_virus_hmm	common_virus	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0016	shell	direct	high	431	0.998	GCA_000834845.1_04577
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	20746	20997	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	20747	20998	GCA_000834845_1_3_17	GCA_000834845_1_3_17	+	95352	.	.	hypothetical protein	MKSHPNKHIQEAIEYALSKGWVWVPAGKSAHCFCKLRCGDKSGEHTSHHRSVWSTPDVPEHHATQIRQAVDQCGRIKNQMSKK*	.	hypothetical_protein	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0017	shell	direct	high	251	0.996	GCA_000834845.1_04578
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	21070	21633	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	21071	21634	GCA_000834845_1_3_18	GCA_000834845_1_3_18	+	95352	.	PFAM:PF11112.7	excisionase-and-transcriptional-regulator	MALYNFTLTLSGVTYETEGLEDALYESGCGDAIVCAYGNSVYVEFDREAKSLDAAIASAVDNIESAGIGAIVESVDSALVGLSDVAEITGMSRQAITMLKDGLRGGGDFPCPIQRIQGQSPLWDWADVANWLEANGRLKENAELAHNARVLSKWNLALRNSVSKDFVEIEHIASSLIARRRHHAECA*	phrogs_hmm	hypothetical_protein	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0018	shell	direct	high	563	0.998	GCA_000834845.1_04579
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	21807	22265	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	21808	22266	GCA_000834845_1_3_19	GCA_000834845_1_3_19	+	95352	.	PDB:2XO6_A	TN-transposase	MRDEKSLAHTRWNCKYHIVFAPKYRRQVFYREKRRAIGSILRKLCEWKNVNILEAEYCVDHIHMLLEIPPKMSVSGFMGYLKGKSSLMLYEQFGDLKFKYRNREFWCRGYYVDTVGKNTARIQEYIKHQLEEDKMGEQLSIPYPGSPFTGRK*	common_virus_hmm	common_virus	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0019	persistent	direct	high	458	0.998	GCA_000834845.1_04581
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	22374	22817	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	22375	22818	GCA_000834845_1_3_20	GCA_000834845_1_3_20	-	95352	.	.	hypothetical protein	MNKENTMNEAQKIAQALAAIPADFQDKAVAATMRSQFWEIIDCPVTLDLALAFAGLDGADKVSRLRKCARALALKTQDPKACQYLLEIYESDNPEEQLEAFKVFRNRLVLKVAKEFMEVNKIGDVRQYRLKRQTRVTLSNIFGKKVA*	.	hypothetical_protein	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0020	shell	direct	high	443	0.998	GCA_000834845.1_04582
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	22814	26338	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	22815	26339	GCA_000834845_1_3_21	GCA_000834845_1_3_21	-	95352	.	COG0587	DNA polymerase III, alpha subunit [Replication, recombination and repair]. 	MKALMVRTDFSLGESALKAENAVKIARDAGYTAVISADSMNIASVIPLQRAAGDDMAVICGVKLNVVDDPTYEHRARLAKESERYMESLVRDRSYCFTALIKNEQGYRDVCELMTLANKREQFYFVPRLALDQLAAAYAKGNIILLTSDIGSVFQRRDFAKIIGTLVTAGGRDNFYSVVYPHPTPFYDQINVRAMKVASALKIEPVAFYPAYYEAVDDADIKDIAHMVTNNIKIDQPHRLRIPHQRDNAVNGRRHLLEALKAFSVRMDVPVTAAMASTTQDTIIEACTWRWHELPPALPKMADDEPATLMKLAVAGLRKRLTTKEFGYTPPASEHRVYVDRLKYEMDTLTRLGFCGYFLMVRDLMNHSRETGIPVGPGRGSSAGSLVAWCIGITNVDPIRHGLLFERFINPERLDLPDADLDFSQARRHEVIEYLNERYGEDYVAGIPNFTYLGAASALRDTARIYGVDAADMAVSKEFKNLEDDSLSLEELREQLASLDKYATKYPEAFKAACKLQSLMRGFGRHAAGMIVAGVPLVERTPVELRGNARCIAFDKRYCEAMGLIKLDVLGLATLDLLDSAKRYIKESTGEDINLDAIPLDDRKVLDGFAAGYTQGVFQLESGPMRKLLKDLGGGIEPMSFKTVVATTALFRPGPIQSGMLDDYVSVAKGFMAPQSLHPVLDELTAETNGVILYQEQTMNATRLLAGFTMAEADGVRKAIGKKDMEKMKSMGEKFVVQAQAGWIDVEMEDGTTQRIHRAEHFKCEDGALRTVEEALEAGVKLPMAAVRVTGSQPGLSETKAKEIWDAFEKNGAYQFNKSHPVAYSLISYQSMWLKTHYPAEFFAAALTILGEDKHQGLVKDALTYGIHVLPPDVNVSSNRIEIRTLEDGSQVLYAPFSAVKGCSENGCQAIMRAREKVGGKFESLEQFEEAVDKRACACNSRVRESLQKVGAFASIEPGSLPATDPERLRDQAELMGNLVIDAVKASRPFEMDPKRSAEVNVLMTRMAAEMGLGDDLIRPSIGIKPKIMVILDNANGNDGRTGYFMENGYDDFKAKLLTAGDLRMGDLYVTGVCKKVKDKEKDYTKDEIGQFTDFMREEINLVRPTYVLTCGSRATSLFNNKSKPSDLVGRKEYLPELDVTVFYGFNPNILYFRPEEGEKLEAILAEVAETISK*	mmseqs_cdd	common_virus	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0021	shell	direct	high	3524	1.0	GCA_000834845.1_04583
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	26519	27754	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	26520	27755	GCA_000834845_1_3_22	GCA_000834845_1_3_22	-	95352	.	TIGR01650	cobaltochelatase, CobS subunit. This model describes Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit that functions in cobalamin biosynthesis. Cobalamin (vitamin B12) can be synthesized via several pathways, including an aerobic pathway (found in Pseudomonas denitrificans) and an anaerobic pathway (found in P. shermanii and Salmonella typhimurium). These pathways differ in the point of cobalt insertion during corrin ring formation. There are apparently a number of variations on these two pathways, where the major differences seem to be concerned with the process of ring contraction. Confusion regarding the functions of enzymes found in the aerobic vs. anaerobic pathways has arisen because nonhomologous genes in these different pathways were given the same gene symbols. Thus, cobS in the aerobic pathway (P. denitrificans) is not a homolog of cobS in the anaerobic pathway (S. typhimurium). It should be noted that E. coli synthesizes cobalamin only when it is supplied with the precursor cobinamide, which is a complex intermediate. Additionally, all E. coli cobalamin synthesis genes (cobU, cobS and cobT) were named after their Salmonella typhimurium homologs which function in the anaerobic cobalamin synthesis pathway. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]	MTATALQQEEHLPEAIVCKWCGKSFHYLKSHISMGRCENIPESAKGLDVDEVVKMYTSAFPDEPTISRTALVKLNEKRAERHSGEGKVAEISAHPGYAGTVEYKTELVAAHELLGVTIKELGTPRGKPLQVTVNVNTPYPEFVPEAKKNYVYGDFDLIKDIFMMLEIGIPGYLWGHAGTGKSSLPTQLCALLNRPLIRAQHTASMEEAHVTGQILARDGSTYFEPGLLALAMKNGWVYLADEYDFAFPQILGVYQPVLEGEPLIIKEATPDWRRITPHKRFAFIGTGNTNGSGDETGLYQGTNIQNAANFSRFGIVSNVKYMSTKAEVNMLAEAGVIREYAEKMVKFANLVREGYEQHLISQPIGPRELLLSAKIGMMRGDFSAGIEKSFINKLPSTSAQAAREVVQKIFG*	mmseqs_cdd	common_virus	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0022	shell	direct	high	1235	0.999	GCA_000834845.1_04584
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	27851	30217	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	27852	30218	GCA_000834845_1_3_23	GCA_000834845_1_3_23	-	95352	.	pfam11775	Cobalamin biosynthesis protein CobT VWA domain. This family consists of several bacterial cobalamin biosynthesis (CobT) proteins. CobT is involved in the transformation of precorrin-3 into cobyrinic acid.	MSKAMTRAVLKEVQDFRDCVKRVVAMLSGKQIPVAERGNEAYVRYNRRGEPVLVNIPSIPDDASPTLMNAVRGFLDHEVAHILFTDPKVAMKMRERGKAPSTGLWNALEDVFIERRMGQVFNGTRRNLLATQNLVIDKYFKGKVSEAVSICHGNQRELFLKFFLCPVVRAWDGQSPFIDFMEEHWHLIDKPVALLKEHGIDVAVRNMSNTEDCVKVAAAIAQIMQDMKDKPEGKLPELKSSAKKPSKSKDESEETPESGDDPSHSESAPKRTKGEDDDKEEQEDDASEEEDSGDSDLPDSLDKDLPIHDKEISDTESKYTEAGEDESGDTPESDDAGMESGDSDDEGGSDGTGAPTPGDGIREDADDSDGYGSGAAGDGDSDNGEDSDAGREESEGEDEGEEDVADHTDGEGKENEDAAEAPEDSESGFVPAPDEMTLEDALKALDEMEEGTDEMTEDALSATISKELMSASLSEYRPYDRSYDFIGLIDEAEEHVKRTRKTFGAIPMHSPVDRYRMVPEGRKLFELKIEKHLSAGVSSTLAKDLERAIASRNRVQFIPGQRRGRIHGANLYRLAMNDDRVFRKKEDHRAVNACVQQVIDLSGSMGGRKIQLALASAYTIADALDRINVPNIITGFTTFGSPDYETMSKRGFTRFEALMLPIIKNWNEKANSPEIRARMGCVCETFPLLNNVDGESVAQLATLFAGRMEDKKIMLVMSDGAPCAAGDGFHEHLRTVTKEIETLSDIDLMAIGVLTDAPRRYYKNYALVNSVEELGPSVVTELSRIILG*	mmseqs_cdd	nonviral_gene	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0023	shell	direct	high	2366	1.0	GCA_000834845.1_04585
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	30327	30539	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	30328	30540	GCA_000834845_1_3_24	GCA_000834845_1_3_24	-	95352	.	.	hypothetical protein	MKNITSNLNALEVGHAYALGMDGVATILTELNTEELPIDMSDTTVFTFELSNKHFTLINTGCGSLAVRTH*	.	hypothetical_protein	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0024	shell	direct	high	212	0.995	GCA_000834845.1_04586
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	30802	31188	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	30803	31189	GCA_000834845_1_3_25	GCA_000834845_1_3_25	+	95352	.	PFAM:PF10078.8	transcriptional-regulator	MATNETDSKQGRYAAYIDSLITISPKSQATIAKEVGYKNANNLSLIKSGKIPLPVDKVRALAVALDADPVRLMLMVLEERHPELLEFFREEGTAPLSADEKRVLEAFRNRFGDQRGASDQVVEAIKKL*	phrogs_hmm	hypothetical_protein	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0025	shell	direct	high	386	0.997	GCA_000834845.1_04587
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	31183	32286	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	31184	32287	GCA_000834845_1_3_26	GCA_000834845_1_3_26	-	95352	.	PDB:1Z19_B	Integrase	MKNTFDKARAAENTSREAIEYLERASGLSAVSTANFDGDMSFSSAFMLFTRLSLLITRRRPEIAVHCVLIHVMPHISEVKVSDISRVLVNQLVNPLILEGKIVQGRRVFSLMKQFLSWCAFQGLIDTSPLNDMSLNKVAGGAKPVPRERKLTDAEVWVFWNIWDYFNVCEGTKWAARLCLVAARRPDEVLRARKDEFNLQCDVWNQGTRNKSARQHALPLSPLMRKCVEELFEYGKGSQWLVPSNKKKGVDTPMSKVAIAQALRRILERPELMDLEPFTPRDLRRTARSYFPALGINQEVARKIMNHSLEGIDRVYDRHDYMDEMRDALDRFSAYIASIVEQQDLDEIDHKFKGDRLATELIRVNFS*	common_virus_hmm	common_virus	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0026	shell	direct	high	1103	0.999	GCA_000834845.1_04588
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	32759	33967	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	32760	33968	GCA_000834845_1_3_27	GCA_000834845_1_3_27	+	95352	.	PFAM:PF00872.17	Transposase,-Mutator-family	MDEKKLKALAAELAKGLKTEADLNAFSRMLTKLTVETALNAELTEHLGHEKNTPKSGSNTRNGYSSKTLLCDDGEIELNTPRDRENTFEPQLIKKNQTRITQMDSQILSLYAKGMTTREIVATFKEMYDADVSPTLISKVTDAVKEQVAEWQNRQLDALYPIVYMDCIVVKVRQNGSVINKAVFLALGINTEGQKELLGMWLAENEGAKFWLSVLTELKNRGLQDILIACVDGLKGFPDAINSVYPQTHIQLCIIHMVRNSLKYVSWKDYKAVTSGLKMVYQAPTEEAALMALDKFAEAWDDKYPQISKSWRTHWENLNTFFGYPPDIRKAIYTTNAIESVNSVIRAAIKKRKVFPTDDSVRKVVYLAIKDASKKWSMPIQNWRLAMSRFIIEFGDRLSDHL*	common_virus_hmm	common_virus	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0027	persistent	direct	high	1208	0.999	GCA_000834845.1_04589
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	34436	35458	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	34437	35459	GCA_000834845_1_3_28	GCA_000834845_1_3_28	+	95352	.	PFAM:PF01548.16	Transposase	MTITTVGIDLAKNVFAVHCVDQNGKTVLVKPKVSRAALPELIAGLPPCVIGMEACSGAHYWARLFREYGHEPRLMAAKFVSPYHMAGKSGKNDAADAQAICEAVRRPHMRFVPVKDESQQAMQCLHRTRQGFIEEKTATYNRLRGLISEFGVIAPQSTDALRRMVSEQKNSLPFQVQQCIDDLLEHVDRIEANIADYDRILSRMAKTDHRSQRLMELKGVGPTTACALVASIGNAHDFKNGRQLAAWLGLTPSQYSSGGKSKLGRITKAGDSYLRTLLVQGARSVLIGADKRTDSFSRWVCTLVERRGYWRAVVAIAAKNARLCWASLHYGDDFRLYSAS*	common_virus_hmm	common_virus	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0028	shell	direct	high	1022	0.999	GCA_000834845.1_04591
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	35657	35962	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	35658	35963	GCA_000834845_1_3_29	GCA_000834845_1_3_29	-	95352	.	PFAM:PF04754.11	Putative-transposase,-YhgA-like	MADYLSSPQVMALIHYLLQAGESADSEAFVRELAQRVPQHGDALMTIAQQLEQKGIEKGIQLGEQKGKLEVGVSLDIENYCTIRASPACQRRYSRFLSALQ*	common_virus_hmm	common_virus	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0029	persistent	direct	high	305	0.997	GCA_000834845.1_04592
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	36807	37277	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	36808	37278	GCA_000834845_1_3_30	GCA_000834845_1_3_30	+	95352	.	COG3344	Retron-type reverse transcriptase [Mobilome: prophages, transposons]. 	MIISEMQRKLATWAATDPPRRVERLLRLITQPEWLAEAARITLASKGAHTPGVDGVNKTTLQARLAAELQILRDELLSGCYQPLPARRVYIPKSNGKQRPLGIPTLRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSVHHAISSPIVGKHEGAG*	mmseqs_cdd	nonviral_gene	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0030	shell	direct	high	470	0.998	GCA_000834845.1_04593
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	37522	39285	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	37523	39286	GCA_000834845_1_3_31	GCA_000834845_1_3_31	-	95352	.	cd09151	Putative catalytic domain, repeat 2, of Yersinia pestis murine toxin-like proteins. Putative catalytic domain, repeat 2, of Yersinia pestis murine toxin (Ymt), a plasmid-encoded phospholipase D (PLD, EC 3.1.4.4), and similar proteins. Ymt is important in order for Yersinia pestis to survive and spread. It is toxic to mice and rats but not to other animals. It is not a conventional secreted exotoxin, but a cytoplasmic protein that is released upon bacterial lysis. Ymt may be active as a dimer. The monomeric Ymt consists of two catalytic domains, each of which contains one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue). Two HKD motifs from two domains form a single active site. Ymt has PLD-like activity and has been classified into the PLD superfamily. It hydrolyzes the terminal phosphodiester bond in several phospholipids, with preference for phosphatidylethanolamine (PE) over phosphatidylcholine (PC) and phosphatidylserine (PS). Like other PLD enzymes, Ymt may utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. In terms of sequence similarity, Ymt is closely related to Streptomyces PLDs.	MLQIDNVINNIGNYFHHLSNINYIRLLDTPHAWGAPFGKEIMQQSYLRQEEFAGAMTEVLRNSRYRCDISSLNSPDAEWRKVIFKAIDESLSKKMGRTQPTQYRFLFGQSPTVFMNGLSAATNGSPDFVAFKSELIQLIKERGQYWEKMPEIWLGRFFRIEEGLATSFMRNVYPDFPPINDTRMTWNHTKIMASDGTEALVGGHNMNMDLFRNYPPVHDVSIITHGSSAYGSQLYLNELWSCNSDLLKKEYFDYESMMWAVGTKFYDKPEDPLKSSVAMNYMKQRQEDLLNLHENFNQKVATRISEYENMEEYKKADRVLSVGKYWTGPNMEHDYQRGSEIMKEQLIKNAKRIIRISQQDLVSAWKKKWKDHFTCNWIIEALLENKDLHIHVVVSALDAAAGAAGDQYSFGSGAERTYELFKYYLTHDIDTDEVLDDPDGSRADALKRILIAPFFFTDKVPDENTIEGETYKWPDLEQSAYTATLKQKPLSEKPPHQGIIGSALMSAIKGSGLFYPKVPVAPGNHAKLMIIDDELYVVGSDNLYPGYLSEFDYLVEGKDAVNELMKSYWEPLWKYSSPHAFPKLSPN*	mmseqs_cdd	nonviral_gene	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0031	shell	direct	high	1763	0.999	GCA_000834845.1_04594
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	39363	39851	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	39364	39852	GCA_000834845_1_3_32	GCA_000834845_1_3_32	-	95352	.	cd09170	Catalytic domain of EDTA-resistant nuclease Nuc from Salmonella typhimurium and similar proteins. Catalytic domain of an EDTA-resistant nuclease Nuc from Salmonella typhimurium and similar proteins. Nuc is an endonuclease cleaving both single- and double-stranded DNA. It is the smallest known member of the phospholipase D (PLD, EC 3.1.4.4) superfamily that includes a diverse group of proteins with various catalytic functions. Most members of this superfamily have two copies of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue) in a single polypeptide chain and both are required for catalytic activity. However, Nuc only has one copy of the HKD motif per subunit but form a functionally active homodimer (it is most likely also active in solution as a multimeric protein), which has a single active site at the dimer interface containing the HKD motifs from both subunits. Due to the lack of a distinct domain for DNA binding, Nuc cuts DNA non-specifically. It utilizes a two-step mechanism to cleave phosphodiester bonds: Upon substrate binding, the bond is first attacked by a histidine residue from one HKD motif to form a covalent phosphohistidine intermediate, which is then hydrolyzed by water with the aid of a second histidine residue from the other HKD motif in the opposite subunit.	MRFKLSVIIFVLVSASALATPSFNVGFSPSHTALENVLSVVNNAQSSLDVEAYTFTSKQISTAIVSAQKRGVNVRVVADAKANRLNYSAIHYLAQQHVPVRLNNNYSIHHNKVMIADGDTIQTGSMNYTTNGDTHNAENVLVIRGAPEIAGKYQVEFNRLWA*	mmseqs_cdd	nonviral_gene	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0032	shell	direct	high	488	0.998	GCA_000834845.1_04595
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	40590	40865	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	40591	40866	GCA_000834845_1_3_33	GCA_000834845_1_3_33	+	95352	.	.	hypothetical protein	MSRRGLRLSQLPPVRSEKPKPAKTSAQLMAEDTLRELIAARFAVGKPVIHIHANWNDALLLRVLKEAIHQAKGPPFVVVPPHLNEHEKEND*	.	hypothetical_protein	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0033	shell	direct	high	275	0.996	GCA_000834845.1_04596
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	40888	41829	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	40889	41830	GCA_000834845_1_3_34	GCA_000834845_1_3_34	-	95352	.	PFAM:PF04754.11	Putative-transposase,-YhgA-like	MKKKNSTPTPHDATFRQFLTQPEIARDFMELHLPAELRAICDLSTLKLESGSFVEDDLRQYFSDVLYSLDTVEGEGYVHVLIEHQSSPDKHMAFRLIRYAIAAMQRHLEAGHAKLPLVIPVLFYVGKRSPYPYSTRWLDEFDDPELAHKLYSGAFPLVDVTVIPDDDIMEHRSMAALTLLQKHIHQRDIATLTDRLVTLLMADYLSSPQVMALIHYLLQAGESADSEAFVRELAQRVPQHGDALMTIAQQLEQKGIEKGRMEGRTEGIQLGEQRGIEKGKLEVARSLLKMGMPIESVQEATGLSEDDLAQIRH*	common_virus_hmm	common_virus	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0034	shell	direct	high	941	0.999	GCA_000834845.1_04597
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	41895	42515	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	41896	42516	GCA_000834845_1_3_35	GCA_000834845_1_3_35	-	95352	.	PDB:4BQQ_A	Integrase	MLIFGYLRASTSEQDATRAKNALKNFARLHGHRIAGWYVDNISGATMTRPKLVQLLEEAEPGDIILIEQVDRLSRLDDVGWEALRKQITDKQLSIVSLDLPTSHLALNNAVSDEFTRSMLKAVNGMMLDMLAAISRKDYEDRRRRQAEGISKAKAEGKYRGRVADAQKHELIRTLRLLHGKSLRETARLAGVSKMTVIRVCQQAEG*	common_virus_hmm	common_virus	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0035	shell	direct	high	620	0.998	GCA_000834845.1_04598
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	42715	43041	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	42716	43042	GCA_000834845_1_3_36	GCA_000834845_1_3_36	-	95352	.	PFAM:PF15781.4	RelE-like-toxin	MAIVIQYTRTVKTCIDDIASHLRHIESEPKEVISGIIEHFEKRVSDFPLGCQVCPELLKIGCAKYRECNTPDGYRVLYSVEDNVITAHAILSHRQDIQNLLFKRLIRI*	phrogs_hmm	hypothetical_protein	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0036	shell	direct	high	326	0.997	GCA_000834845.1_04599
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	43041	43268	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	43042	43269	GCA_000834845_1_3_37	GCA_000834845_1_3_37	-	95352	.	PFAM:PF12910.6	antitoxin-from-a-toxin-antitoxin-system	MKIETISYVKKNAASLDLEEPILVTQNGVPAYVIESYDAQQERQNAIALLKLLTLSEQDKADGNIFSKEQLLAGL*	phrogs_hmm	hypothetical_protein	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0037	shell	direct	high	227	0.996	GCA_000834845.1_04600
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	43540	44775	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	43541	44776	GCA_000834845_1_3_38	GCA_000834845_1_3_38	+	95352	.	PDB:3EZ9_B	ParA;-dna-binding,-winged-hth-protein	MGRESISGETMKRDYGSVGTIALRASALLQAMSRDIEEQRKEFNLTEYHQTYTRNAVAKLPKLSRRIVELAVKEMEESGYEFNKKQVGNVEQYALTIQNVIDIYAHRQIPKYRDIHKAPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQASSTMFLDHTHSIGTVLETAAQAMLNDLDAETLREAVIRPTIIPGVDVIPASIDDGFVASQWESLVAEHLPGLKPSEVLRKTIIDRIAGDYDFVFIDTGPHLDPFLLNGLAASDLLLTPTPPAQVDFHSTLKYLTRLPEMLERLEEEGVEPRLSASIGFMSKMTSKRDHETSHSLAREVYASNILDSSLPRLDGFERCGESFDTIISANPVSYPGSAEALKKARTEAERFTKAVFDRIEYIRGASK*	common_virus_hmm	common_virus	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0038	shell	direct	high	1235	0.999	GCA_000834845.1_04601
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	44772	45743	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	44773	45744	GCA_000834845_1_3_39	GCA_000834845_1_3_39	+	95352	.	PFAM:PF08775.9	ParB-like-protein	MKQVIARGRVLGNSNSEFARMLEGDGDVKTFTLKSGVQARFVKTVVLSGEVESKTFVDASVNGRDQTMLTRESVSDISRTIKLQQFFPAIGREVNGLIEILDGTRRRAACIFNNVKFEILVTKDDISLADARQLAKDIQTAREHSLRELGKRLEVTYGTSMTKEDIALKENLSPAKVTRAFQAAAVPDEMVAVFPVINDISLSDYQFLLKLAEEANNKQTSVTELMEKVQHRLKTMPDYPAIDKSKILAVIRSESKLLTALPTRTVQTEKLREFSDRNQFARKKTDPKKRLVVYEFSRISAEAQSEIDKAIKRILERLPESGE*	common_virus_hmm	common_virus	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0039	shell	direct	high	971	0.999	GCA_000834845.1_04602
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	46128	47519	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	46129	47520	GCA_000834845_1_3_40	GCA_000834845_1_3_40	+	95352	.	COG1672	Predicted ATPase, archaeal AAA+ ATPase superfamily  [General function prediction only]. 	MAIAGCDLPTFATRLNEVLTLSVPVRTPEKLFGRDKQLETIQLALHSPGRHVFIYGDRGVGKTSLAHTAASLIQSSDNRPITVSCDHDSTLETVIESVISQGMMRMPVDRYKTSATFGLNIPVLKAEARVEERETSRVRSVVNMASAVEALNYLTERYSDNTVIVIDEFDLIRSEEQRARFGVLLKQLSDGDVPVRIIFTGIGQSVSDLIGGHLSSQRQIEQVDLERLHWTGRQRIVESAFRYFDINIPDDIADRICALSDGFPYYVHLMCSKLLHECYMADEVVSTVTRDLFLASLDAAVLSAEETLRSCYEAATCRDEHMHHILWAMAEGADLNRMKDHIITSYIQVMKYLDIEPLTQKNFDSRFARLRKENHGSILCHALVGKDGVRPGWFRFRENMIRGFVRMQAEKCGIVLDFDRQYSAHTASTRTAAVRGVYNPLSTVERSVARLRRDDEKEAEENE*	mmseqs_cdd	nonviral_gene	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0040	shell	direct	high	1391	0.999	GCA_000834845.1_04603
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	47681	47881	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	47682	47882	GCA_000834845_1_3_41	GCA_000834845_1_3_41	-	95352	.	.	hypothetical protein	MDREMLAEWLRDIARHIEEESPLIRDVSVDDALSEEGLARKIITITFNAPGRAPQPEEDVSSIPRH*	.	hypothetical_protein	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0041	shell	direct	high	200	0.995	GCA_000834845.1_04604
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	48382	49059	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	48383	49060	GCA_000834845_1_3_42	GCA_000834845_1_3_42	+	95352	.	PDB:1G60_B	Adenine-specific-DNA-methyltransferase	MSRFIQGNCVHIMSGFPDNAVDFILTDPPYIVGFRDRQGRTIAGDKTDEWLQPACHEMYRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKTYTSKAAYVGYRHECAYILAKGRPPLPQNPLNDVIAWKYSGNRHHPTEKPVTSLQPLIESFTHPGAIVLDPFAGSGSTCVAALQAGRRYIGIELLEQYHRAGQQRLAAVRRAMQYPAANDEFPEAA*	common_virus_hmm	common_virus	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0042	shell	direct	high	677	0.999	GCA_000834845.1_04605
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	49059	49280	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	49060	49281	GCA_000834845_1_3_43	GCA_000834845_1_3_43	+	95352	.	.	hypothetical protein	MNYAGHEKLRAEVAEVANSMCDLRATLNGMEHRYRFDSDVLVERLTRQTLFRINALFMAAYNEMLELDACFKD*	.	hypothetical_protein	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0043	shell	direct	high	221	0.995	GCA_000834845.1_04606
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	49291	49710	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	49292	49711	GCA_000834845_1_3_44	GCA_000834845_1_3_44	+	95352	.	pfam07128	Protein of unknown function (DUF1380). This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.	MYGTCETLCRLLREQYPAETPLNLIVWSPADIEALADGMEYAVSEQDTRAVLARMDAIPEEQQLESGVSAGAVMDLIEQVKEAVPAVMVPADLLETLLTTAEQALWHREWTARDSNHPVPESVTRRLADAAKVRALLKK*	mmseqs_cdd	nonviral_gene	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0044	shell	direct	high	419	0.998	GCA_000834845.1_04607
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	49764	50543	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	49765	50544	GCA_000834845_1_3_45	GCA_000834845_1_3_45	+	95352	.	.	hypothetical protein	MQETTTLNALVMRRARDLIADYGWPDHTDVDQRDPVNKPGWISIYVRLDAANIVHLLPLLCSGDIPAELQNAMTKIAGTSAQIILSGSRYADAPQLPEDGTQIAFPWAGEWLTEPEIQAVTDCLSRAVRDVSRQVWEDARRIKAALTTRGETLFYRQTRNFRLVVKENDMPCWLDDDDNLPVVLDAILNKGARYSSVEFFVISDKVDQILACGQMCDVLRIPGEPPRRWMDLTLLHEVMAEARAEISLVRNALSAIRPV*	.	hypothetical_protein	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0045	shell	direct	high	779	0.999	GCA_000834845.1_04608
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	50942	51448	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	50943	51449	GCA_000834845_1_3_46	GCA_000834845_1_3_46	+	95352	.	COG4734	Antirestriction protein  [Defense mechanisms]. 	MRTTTTTPAVYVGTYHKYNCGSIFGKWFELTEFDGREDFYEACQALHADEWDAEFMFQDQEGIPSQFVSESAIDWDFIAAYKRAEEEGREAAFIAWAEYTGECDYDAFDDAYRGEAESEEDYAQEMVDDNGLLNEVPEPLRSYFDFEAYARDLFSSGYVFHDGYVFGN*	mmseqs_cdd	nonviral_gene	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0046	shell	direct	high	506	0.998	GCA_000834845.1_04609
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	52161	52391	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	52162	52392	GCA_000834845_1_3_47	GCA_000834845_1_3_47	+	95352	.	pfam06006	Bacterial protein of unknown function (DUF905). This family consists of several short hypothetical Enterobacteria proteins of unknown function. Structural analysis of the surface features of the protein YvyC has revealed a single cluster of highly conserved residues on the surface. Additionally, these residues fall into two groups which lie within the two largest of the three cavities identified over the surface. The conclusion from this is that these two cavities with, Leu 58, Glu 75, Ile 82, and Glu 83 and Pro 86, conserved, are likely to be important for the molecular function and reflect the cavities found on the surface of the FlaG proteins in pfam03646.	MSEALAVLPDDTFTREQAEVVAAQYTNVAIEDDQGAHFRLVVRQNGEMVWRTWNFEPGGTYWLNRYIADYGIRKPQ*	mmseqs_cdd	nonviral_gene	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0047	shell	direct	high	230	0.996	GCA_000834845.1_04610
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	52464	54473	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	52465	54474	GCA_000834845_1_3_48	GCA_000834845_1_3_48	+	95352	.	PDB:1VZ0_A	ParB	MSVTDVKAKAPKKASSKKITKAQEEALKAALEAAVIEYVPLSSLAKSPLNVRTIPYSVDSVRGLADSIEALGLLQNLIVHTLADGQSGVAAGGRRLTALNLLAQEDRLAADHTVMVKRVSDDIAALASVAENEQRAAMHPAEQIAGFRTLAEQGKTPAQIGDALGFGSRHVQRMLKLANLAPSLMEKLAQDELTVEQCQALCLEDDPARQVEVFENVKASWSNAPAHLIKRAITETEMRTDNAKFRFIGRDAYEAAGGYVREDLFSQDEGDGTADSVLVERLVQEKLERIAQDIQQREGWAWSRGRAARIWYHGEDGKEFVQPVEPDPVYTPEQQQRLDALREQYDTYDSVCDESDAIEADILAIQEAAEASAWTDDMKSGAGVMVSLYEGQVYVQRGVRLKADMPEETVTSSVTVPFTSRQPDAAEGINVPLLTKMTSERTLAVQAALMQQPEKAVALMVWRMCTCVFSGCLTTTHPFRISLTVSHGSLTENAPSGKDGAAFEMLMTERARLKALLPEGWEKDFTTFFALDGGVLMSLMAFCTACSVDGVQTRDMGHTSRSPLDTVEAAIGFHLRDWWQPTKDNYFGSLKHPQIVASLKEAGLTGAAGDAEKMKKGDAAAHAEHFMQHTRWVPAWLKGPEPAAESGADDAVSDTDSTDNDTTNTAHAA*	common_virus_hmm	common_virus	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0048	shell	direct	high	2009	1.0	GCA_000834845.1_04611
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	54597	55619	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	54598	55620	GCA_000834845_1_3_49	GCA_000834845_1_3_49	+	95352	.	PDB:1BCO_A	Mu-Transposase	MVTFETVMEIKILHKQGMSSRAIARELGISRNTVKRYLQAKSEPPKYTPRPAVASLLDEYRDYIRQRIADAHPYKIPATVIAREIRDQGYRGGMTILRAFIRSLSVPQEQEPAVRFETEPGRQMQVDWGTMRNGRSPLHVFVAVLGYSRMLYIEFTDNMRYDTLETCHRNAFRFFGGVPREVLYDNMKTVVLQRDAYQTGQHRFHPSLWQFGKEMGFSPRLCRPFRAQTKGKVERMVQYTRNSFYIPLMTRLRPMGITVDVETANRHGLRWLHDVANQRKHETIQARPCDRWLEEQQSMLALPPEKKEYDVHLDENLVNFDKHPLHHPLSIYDSFCRGVA*	common_virus_hmm	common_virus	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0049	persistent	direct	high	1022	0.999	GCA_000834845.1_04612
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	55619	56398	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	55620	56399	GCA_000834845_1_3_50	GCA_000834845_1_3_50	+	95352	.	PDB:4M4W_K	Replicative-helicase	MMELQHQRLMALAGQLQLESLISAAPALSQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFTFATGAPQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIAMGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPFSQEEAKLFFQVIAKRYEKSAMILTSNLPFGQWDQTFAGDAALTSAMLDRILHHSHVVQIKGESYRLRQKRKAGVIAEANPE*	rep_hall_hmm	common_virus	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0050	persistent	direct	high	779	0.999	GCA_000834845.1_04613
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	56502	56897	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	56503	56898	GCA_000834845_1_3_51	GCA_000834845_1_3_51	+	95352	.	cd09899	H3TH domain of bacteriophage T3, T4 RNase H, T5-5' nucleases, and homologs. H3TH (helix-3-turn-helix) domains of bacteriophage T5-5'nuclease (5'-3' exonuclease or T5FEN), bacteriophage T4 RNase H (T4FEN), bacteriophage T3 (T3 phage exodeoxyribonuclease) and other similar 5' nucleases are included in this family. The T5-5'nuclease is a 5'-3' exodeoxyribonuclease that also exhibits endonucleolytic activity on flap structures (branched duplex DNA containing a free single-stranded 5'end). T4 RNase H, which removes the RNA primers that initiate lagging strand fragments, has 5'- 3' exonuclease activity on DNA/DNA and RNA/DNA duplexes and has endonuclease activity on flap or forked DNA structures. Bacteriophage T3 is believed to function in the removal of DNA-linked RNA primers and is essential for phage DNA replication and also necessary for host DNA degradation and phage genetic recombination. These nucleases are members of the structure-specific, 5' nuclease family that catalyzes hydrolysis of DNA duplex-containing nucleic acid structures during DNA replication, repair, and recombination. They contain a PIN (PilT N terminus) domain with a helical arch/clamp region/I domain (not included here) and inserted within the PIN domain is an atypical helix-hairpin-helix-2 (HhH2)-like region. This atypical HhH2 region, the H3TH domain, has an extended loop with at least three turns between the first two helices, and only three of the four helices appear to be conserved. Both the H3TH domain and the helical arch/clamp region are involved in DNA binding. Studies suggest that a glycine-rich loop in the H3TH domain contacts the phosphate backbone of the template strand in the downstream DNA duplex. The nucleases within this family have a carboxylate rich active site that is involved in binding essential divalent metal ion cofactors required for nuclease activity. The first metal binding site (MBS-1) is composed entirely of Asp/Glu residues from the PIN domain, whereas, the second metal binding site (MBS-2) is composed generally of two Asp residues from the PIN domain and two Asp residues from the H3TH domain. In the T5-5'nuclease, structure-specific endonuclease activity requires binding of a single metal ion in the high-affinity, MBS-1, whereas exonuclease activity requires both, the high-affinity, MBS-1 and the low-affinity, MBS-2 to be occupied by a divalent cofactor. The T5-5'nuclease is reported to be able to bind several metal ions including, Mg2+, Mn2+, Zn2+ and Co2+, as co-factors. Together with the helical arch and network of amino acids interacting with metal binding ions, the H3TH region defines a positively charged active-site DNA-binding groove in structure-specific 5' nucleases.	MQGDTSDNIKGVGGIGDGGAKELLHEWGSVAAMVRGINDGSIVINKGRYKTAFNKLAKNAFNEKTGCRMLEAFKRNMMLMNLIDTKFPPSEIESIKGARDMNAFEQMCCELNFRSFLEDLEVFVLPFERYC*	mmseqs_cdd	nonviral_gene	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0051	shell	direct	high	395	0.997	GCA_000834845.1_04614
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	56897	57163	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	56898	57164	GCA_000834845_1_3_52	GCA_000834845_1_3_52	+	95352	.	.	hypothetical protein	MLKSIINGGATTPTMLAKEIVFCHGEHAVVALPNILGAAGISATEREFALVSEQVVKIIARVAKHLNHDAIKFDEAAASKRINESKGA*	.	hypothetical_protein	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0052	shell	direct	high	266	0.996	GCA_000834845.1_04615
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	57166	58242	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	57167	58243	GCA_000834845_1_3_53	GCA_000834845_1_3_53	+	95352	.	PDB:3HR8_A	Protein-rec	MAKGKSALALALKKKIGSNDEIQKVSHWIDSGFPPLNKAISGRYDGGFPCGRIVEVFGPPSAGKTFLATAAMVSAQKQDGLAVFLDHENSFDVGLAVANGLNADEDDGQWVYKQPDTFEDSVELIGTILKLVRDEELIPETAPICIVADSLASMVPNSKAEKFDKMAEGTAKDKDQLNMNDNTALARATSANFPTLALWARKYNACIIFLNQVRTKIGVMFGDPTTSPGGDSPKFYASVRIRLGASVMKDGKEKIGQDVGAECIKNKVAPPFGKCSWKFYFDPTRGLDVIESLVEYMLEEGYLPKNASGRVEIGDKRYTKSQIVEMYREKPLPEIIAALQAIDERRAKESSPAETEEA*	common_virus_hmm	common_virus	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0053	shell	direct	high	1076	0.999	GCA_000834845.1_04616
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	58386	60005	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	58387	60006	GCA_000834845_1_3_54	GCA_000834845_1_3_54	-	95352	.	PRK09103	ribonucleoside-diphosphate reductase subunit alpha. 	MGAAASIFDGMTTCQLHEALVKSAADLISPETPNYLQVAARLNLFKIRKDAFGQYDYPNFYNHIVSNVSRGVYDEDLLKYYSLEEIAELGAYIKPKRDEYFGYAATVQLASKYLVQNRVTGAIYEGPQQLYMLVGMCLFQNWEDGCAGKTRLEMVRGFYDVTSTFKLSLPTPIMAGVRTPTRQFSSCVLIEAADSLKGISAASSAIIDYVSRRAGIGIGFGRLRALGSEIRNGEATHTGVIPFLKHFQTAVKSCSQGGVRSGAATAFYPIWHLEVESLLVLKNNRGIEENRVRHLDYGVMINRLMYRRLVHNENITLFSPHDVPGLYDAFFVDQDKFEELYLEYEADESIRKKSIPAVDLFSTLMQERASTGRVYIANVDHMNDHGAFVPEIAPVHQSNLCMEITLPTKPLAFTDDPNGEIALCTLSAFNLGAIRTLDSLKDVAFYAVAALDSLLDYQDYPMAAAEIPAKARRSLGIGVTNFAYYLAKNGFNYSDAAGNQLVHETFEAIQYYLLDASCRLAEEKARSLLAEISDGTSKP*	mmseqs_cdd	common_virus	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0054	cloud	direct	high	1619	0.999	GCA_000834845.1_04617
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	60099	60443	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	60100	60444	GCA_000834845_1_3_55	GCA_000834845_1_3_55	-	95352	.	PFAM:PF02075.16	RuvC-like-Holliday-junction-resolvase	MVFCELPVGSQSSRAQTSYGICIGVLACVDKPLIQVTPNEIKHYVGNKLTTSKEEIIQWATQKQPNAPWLRRKQSGKEVLVNKNEHLADAVASIYTGMQTDQFRQVRDVLAGIL*	phrogs_hmm	hypothetical_protein	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0055	shell	direct	high	344	0.997	GCA_000834845.1_04618
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	60487	60684	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	60488	60685	GCA_000834845_1_3_56	GCA_000834845_1_3_56	-	95352	.	PFAM:PF02075.16	RuvC-like-Holliday-junction-resolvase	MSKTIRVVGVDPSMSNFGLAIGTLDLETDKLDIHGLTLVETKAGGNQSWWQQEDGSRKQRRSTPR*	phrogs_hmm	hypothetical_protein	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0056	cloud	direct	high	197	0.995	GCA_000834845.1_04619
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	60697	61443	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	60698	61444	GCA_000834845_1_3_57	GCA_000834845_1_3_57	-	95352	.	.	hypothetical protein	MSFNLSRTQFLQMFAVMQSIKLINHHTAKAAAPALLWKNENINDDQFSVLTSLLSSTPLMPSLAMLPSGSTAPILVNPFTEGGYLPHSGPGFVAIPETGTLNIQENALFNAMETHISTAFTNLIRHANARADHVAMPGAAFASVSVDYDRHAPISKRAKLCFYEEGCEVAVIEVLLPHVFSANEKVAHHLIDIMRHFIGQSMIDADIAAGVLTNDSIHVVSDIPKPPTREPEKTLEQKLMECPTWATW*	.	hypothetical_protein	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0057	shell	direct	high	746	0.999	GCA_000834845.1_04620
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	61433	63349	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	61434	63350	GCA_000834845_1_3_58	GCA_000834845_1_3_58	-	95352	.	PDB:4UX3_A	Chromosome-Mainenance-protein	MKFLKLQVENFMALASAEVELDQRGLVLIQGVNSGDSSAASNGAGKSTLMNSLMWCLYGETAHGVKGDDVLSTGHEKNCRVMVTVEDEGKRYAIIRHRKHKEFKNRLIVRGEDGDMTKGKDTLTQEFVERLIGASKEVFMASIYASQEAMPDLPGMSDKNLKTIVEEAAGVDRLTRAYAIARERANAAAARMDVTKSKMDACLTLIETAQSEIEAAKASSDSWERDRGERLDKARVDLAGAEVTLSEVVMEIRSLPEQIRDTENAIAGERCKLASKEEHDAKLLKVRGAITEIRSSIHTSEAAQNESMNRARSFKTKAEEVSTKVGAPCVTCGKPYCEEDLSTVKESFIEQARNEIGQAQASASAVAQHKARLEKALGIESALVAATPDVSEIIAKIERLTNELSALRHREREVVAVEAMVARARTDVNRIMAEVNPFLAVIKRHEDNLAANKSNHAVLKNELKSIQEQALLLEKARQVYSPAGVRSHILTSVTPFLNIRTAEYLNTLSDGNIVAEWSTMETTKKGEYRDKFNISVTKTGSSKSFQTLSGGEKRKVRIACSLALQDLVASRASKNIELFIGDEIDDALDTAGLERLMGILEAKARERGTVMIISHKEMKSWFRETITVEVKEGRSYVV*	common_virus_hmm	common_virus	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0058	shell	direct	high	1916	0.999	GCA_000834845.1_04621
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	63579	64664	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	63580	64665	GCA_000834845_1_3_59	GCA_000834845_1_3_59	-	95352	.	PDB:3THO_B	Probable-DNA-double-strand-break-repair	MTLPYGVISDPHYHRWDAFATTNADGLNSRLEIQLDATKEAAKAMKAAGCKHMLVAGDTFHVRGAISPSVLHFVTETYEWIIKELGLEVVMLAGNHDLETNDSVYSANAAASLRSIGVEIVCGKRPHSIKIGDVTVHLISWRNNHAELISDLKTLRSGLDGDNHDVVVHTSINKAIPTMPDVGIDAQELKDIGFRLLLSGHYHNHKEVLPGVVSIGALTHQNWGDVGSLAGFMIVNPDGTFTHHETSAPKFVNLEDDVEDDQIRGNYVRFRAVVENDEEGIKLQNVLKTMGAKGVVCNFIRKASMMEGSASTAETSKIDSLGESVAAYCKIVHDTDGGFDLSKLDMLCQEILTEAESAEAV*	common_virus_hmm	common_virus	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0059	shell	direct	high	1085	0.999	GCA_000834845.1_04622
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	65080	65898	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	65081	65899	GCA_000834845_1_3_60	GCA_000834845_1_3_60	+	95352	.	COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component [Inorganic ion transport and metabolism]. 	MFRCLALTVSLAFILPGALHAADTRESSSSIRDINVITFQGGWNLPVWVAQEKGFFRKNGLNVKMDYTPNSGQLVRNLLNGKYNIAVAGIDNVIAYQEGQVKEPVVNPDMFAFYGVDNGLLSLVVNPQIKNISDLKGKQVSVDALTTGYAFVIRNYLEKNGLTQNDVHYTSVGSTNDRFNALLAGKTDATLLRTPLNLQAKENGFKILASGSELGDYQGTTGITTRSWAAQNGDILVSYIRSYIDGLNWIYDPRNQKEAEEILVKKAPGMTA*	mmseqs_cdd	nonviral_gene	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0060	shell	direct	high	818	0.999	GCA_000834845.1_04623
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	66463	67107	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	66464	67108	GCA_000834845_1_3_61	GCA_000834845_1_3_61	-	95352	.	.	hypothetical protein	MDLKRTRWVRRLEDGSYTIESNTILNKQKLLCDLCGIASKCPINETRLKLYDAGAHFHLNSCIRYVPLLAFRKPIIGLDAPYFNTLRSGVTWRDRVEPGKLVCLVEADTGNIIRFGRVDKVYSGPVDEMLRKHSRFNHLCMGGEKIDKVGEVIRKSYGHFLNDDSLLTAIYIRHVDREFDTEYHSAEELNLVDPRPKAGVIDISVARQKPSETF*	.	hypothetical_protein	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0061	shell	direct	high	644	0.998	GCA_000834845.1_04625
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	67496	67678	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	67497	67679	GCA_000834845_1_3_62	GCA_000834845_1_3_62	-	95352	.	.	hypothetical protein	MAQRFAGCGDLFGSLWVFVGLFGSIWDLNYWIGPVYKNQVIAKPAITPFLGIMCGGNKHA*	.	hypothetical_protein	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0062	.	unmatched_CDS	none	0	0	.
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	67862	68926	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	67863	68927	GCA_000834845_1_3_63	GCA_000834845_1_3_63	+	95352	.	PFAM:PF07042.10	replication-helicase	MSENGNKNIAIVEAFSETDKKTGEVVTLVPNTNNTVQPVALMRLGLFVPTLKSTSRGRKGQMVSMDASAELKQLSLAKAEGYEDIRISGVRLDMDNDFKTWVGIIHAFAKHKVVGDTVTLPFVEFVRLCGIPTARSSAKLRKRLDSSLTRIATNTISFRSKGSDEYYVTHLVQTAKYSTKNDTVSLQADPKIFELYQFDKKVLLQLRAINELSRKESAQALYTFIESLPPDPAPISLARLRARLNLTSRTITQNATVRKAMEQLREIGYLDYTEVKRGSSVYFIIHYRRPKLRPALPPTKAAPEEPEEQEDNLPGDGQEDIIDVVPEEKDGEMVMLSKEELAILEEMRKAKARK*	phrogs_hmm	hypothetical_protein	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0063	shell	direct	high	1064	0.999	GCA_000834845.1_04626
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	69495	69707	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	69496	69708	GCA_000834845_1_3_64	GCA_000834845_1_3_64	-	95352	.	.	hypothetical protein	MAVTMAGLEIEKTSGYWRAKGFKQPGVLERLEREDGVIIHQRREWRMYDPETGKLTTKAGTLWGLLKKIH*	.	hypothetical_protein	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0064	shell	direct	high	212	0.995	GCA_000834845.1_04627
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	69707	70042	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	69708	70043	GCA_000834845_1_3_65	GCA_000834845_1_3_65	-	95352	.	.	hypothetical protein	MKKTALALALFTLPVYANTHVYECEMSVAEVKNDEICNVVKANYGAMIVDSGEQFYVVRDDRVLSSPYLTRRNGKLSGVGEDKFVYDKSGDVYGVHAKNASYLFDDCKEVG*	.	hypothetical_protein	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0065	shell	direct	high	335	0.997	GCA_000834845.1_04628
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	70039	70218	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	70040	70219	GCA_000834845_1_3_66	GCA_000834845_1_3_66	-	95352	.	.	hypothetical protein	MKTVLDTLLLIISIAFVLDCIFTGVIHKALAPVNSAMINALAVVLLFDSAFGVIQGVVA*	.	hypothetical_protein	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0066	shell	direct	high	179	0.994	GCA_000834845.1_04629
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	70259	70534	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	70260	70535	GCA_000834845_1_3_67	GCA_000834845_1_3_67	-	95352	.	.	hypothetical protein	MKILVRISSSTDYDVYPLFMVKCDGLNDEEIQAAIERNLVEYTGMDADSVHVDDDGVCWSNGSCWYVDDTTPVSDEDAAHLERILGISTFE*	.	hypothetical_protein	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0067	shell	direct	high	275	0.996	GCA_000834845.1_04630
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	70602	71012	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	70603	71013	GCA_000834845_1_3_68	GCA_000834845_1_3_68	-	95352	.	PHA02053	hypothetical protein	MKKLYDAANAALDVVDTEIAQGFPEPEWATQLREAIAEMNAPEPSEDEADWQRFIRMYAEEIGPTPTAEQAMLLKYFKEAGENLPVDDTPHWFHAAWRKFDVIYTRDLGSKDMVVWHLMHIDKAVDRTLEKFFPPA*	mmseqs_cdd	common_virus	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0068	shell	direct	high	410	0.998	GCA_000834845.1_04631
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	70996	71367	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	70997	71368	GCA_000834845_1_3_69	GCA_000834845_1_3_69	-	95352	.	pfam10765	Protein of unknown function (DUF2591). This bacterial family of proteins has no known function.	MKNYAEMTDFEINCLVAEATGHRPLISQYGWKGSQVGDYTKVIAIGPNGAGSFDWCNNPVDAWDIISRNRIGIIPARQAGEWRAAHRLVDSSTPQHLIQNPNPFRAAMIVFLLMQEKKREKTV*	mmseqs_cdd	common_virus	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0069	shell	direct	high	371	0.997	GCA_000834845.1_04632
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	71521	72351	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	71522	72352	GCA_000834845_1_3_70	GCA_000834845_1_3_70	-	95352	.	CDD:cd03405	High-frequency-of-lysogenization-C-protein	MKKGLLAVTLAAICTMGLTGCDRVEPGYVGIKVNKLGEDKGIGEVVGVGRQWTGLNTELYTFPTFKQMKTYDEPFTFQMSDGTAIGHKIGVAYLVNRNKVTTVFQTYRKGVDDITDTDLRQKIADSLNRLASRMTTDTFIDGGKASLLDNALKDIQAEMSPVGIEVISLSWVGKPDYPDTVIESINAKVTANQKTLQRQQEVEQRKAEANMLREQAEGEADAIRKRAQAEADAIKLRGEALRQNPNVMELEAINKWNGQLPQYMTEGANTPFIALK*	common_virus_hmm	common_virus	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0070	shell	direct	high	830	0.999	GCA_000834845.1_04633
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	72563	73081	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	72564	73082	GCA_000834845_1_3_71	GCA_000834845_1_3_71	+	95352	.	PRK09103	ribonucleoside-diphosphate reductase subunit alpha. 	MPWEELRGRIREHGLRNSTLTAQMPCETSSQITNSTNGIEPPRGPVSVKSSKDGIVKMVVPDFAQLKYQYEYLWDMPDNRGYLTKVAIIQKFFDQAISANTNYDPTRFPGDKVPMMKLLEDLLFAYQQGVKTLYYHNTRDGAGKRDDDDQVSEPSAEEVVEPEDECDGACKI*	mmseqs_cdd	common_virus	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0071	cloud	direct	high	518	0.998	GCA_000834845.1_04634
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	73189	74331	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	73190	74332	GCA_000834845_1_3_72	GCA_000834845_1_3_72	+	95352	.	PRK09101	ribonucleotide-diphosphate reductase subunit beta; Reviewed	MTYSTFRLGANDATKEPMFLGQSVNVARYDQQKYRDFEKLIEKQLSFFWRPEEVDITTDRIDFNTKLQEHERHIFLSNLRYQTLLDSVQGRSPNATLLPLISIPELETWVETWSFSETIHSRSYTHIIRGMVDDPSIVFDGIVTDEEIISRAVSISSEYDRLYEMTCARQHLGEDEFERLYVSEFDGKPYPLQRQLFRTLVSVNALEAIRFYVSFACTFAFGERKLLEGNTKIMRFIARDEALHCEGTERMIRFMRTGREGLMWKMIAAEEESFIYQTMMDVAGQEMRWADYLFKDGSMIGLNADILKSYVKYRTNLAMRRLGLRPLFPEIKDDPLVWMNKWLLSDTLQIAPQEAEQSNYLVGQIDSAVDRSGLSQFADL*	mmseqs_cdd	common_virus	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0072	cloud	direct	high	1142	0.999	GCA_000834845.1_04635
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	74488	75285	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	74489	75286	GCA_000834845_1_3_73	GCA_000834845_1_3_73	+	95352	.	cd11530	Nucleoside Triphosphate Pyrophosphohydrolase (EC 3.6.1.8) MazG-like domain found in Deinococcus radiodurans DR2231 protein and its bacterial homologs. This family includes a MazG-like NTP-PPase from Deinococcus radiodurans (DR2231), a putative NTP-PPase YP_001813558.1 from Exiguobacterium sibiricum and their bacterial homologs. DR2231 shows significant structural resemblance to MazG proteins, but is functionally related to the dimeric dUTPases. It can hydrolyze dUTP into dUMP. DR2231-like proteins contain a well conserved divalent ion binding motif, EXXEX(12-28)EXXD, which is the identity signature for the all-alpha-helical NTP-PPase superfamily. Unlike normal dimeric dUTPase-like proteins with a central four-helix bundle forming the active site, YP_001813558.1 displays a very unusual interlaced segment-swapped dimer. It potentially prefers to hydrolyze dCTPs or its derivatives. YP_001813558.1-like proteins contain a variant divalent ion binding motif, EXXEX(12-28)AXXD.	MNPGFGKATENIYLMVDQFHTLFQHPRRAIPDPALLRLRAKLIHEEAVTEGIPAAKNGDMTALLDAMADFLYVGVGTMVAIKGGISTGMSYYTQEQSVDRFIHTIMVSGNTVFDDMAIPFEEAKEAALMLNALADKLEAKPISDSELVQELRRVMNKIYVACMMTYRLADFLGIDIVELVAEIHRSNMTKLWPADAEERRVAVENCKYNKEDLGFRHAEGTDMMIGFRVSDGKILKSPTYSDVDLTRFVEKAKSSSLYEMVKKQL*	mmseqs_cdd	common_virus	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0073	cloud	direct	moderate	755	0.946	GCA_000834845.1_04636
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	75524	75982	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	75525	75983	GCA_000834845_1_3_74	GCA_000834845_1_3_74	+	95352	.	PDB:2XO6_A	TN-transposase	MRDEKSLAHTRWNCKYHIVFAPKYRRQVFYREKRRAIGSILRKLCEWKNVNILEAEYCVDHIHMLLEIPPKMSVSGFMGYLKGKSSLMLYEQFGDLKFKYRNREFWCRGYYVDTVGKNTARIQEYIKHQLEEDKMGEQLSIPYPGSPFTGRK*	common_virus_hmm	common_virus	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0074	persistent	direct	high	458	0.998	GCA_000834845.1_04638
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	76182	76463	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	76183	76464	GCA_000834845_1_3_75	GCA_000834845_1_3_75	+	95352	.	.	hypothetical protein	MTDFTISPKAENVWLESWLDLSSEEKREMDHIEQDEQCDARFFHFEGSVYDIADFMRDDRFPGWHAGYPLNAFAMLMIRVDGSGDTIDVGLLH*	.	hypothetical_protein	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0075	shell	direct	high	281	0.996	GCA_000834845.1_04639
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	76480	76656	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	76481	76657	GCA_000834845_1_3_76	GCA_000834845_1_3_76	+	95352	.	.	hypothetical protein	MLVALNGHPVSRRLKTPTSYRQATEQPSDSLQATICRNRTLGRLMRVAIIKPTRKQIV*	.	hypothetical_protein	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0076	shell	direct	high	176	0.994	GCA_000834845.1_04640
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	76669	77151	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	76670	77152	GCA_000834845_1_3_77	GCA_000834845_1_3_77	+	95352	.	.	hypothetical protein	MNFIATVNTPSHGHISVTFSDNDKSVLGAWRDNVTIELSGKEKQQITNDIICNRRHKRVFEKAYVSTSGFGVFIFPVRSGRFCRSKLIEFATQIALWVKTESGFDFTEQEAVGEGMRIANNAIKCKNVIYEAGIDSWSISCGDYVKEVYGKNRIHILAGK*	.	hypothetical_protein	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0077	shell	direct	high	482	0.998	GCA_000834845.1_04641
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	77790	78017	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	77791	78018	GCA_000834845_1_3_78	GCA_000834845_1_3_78	-	95352	.	.	hypothetical protein	MVIFIAGVNIHNHTLVYDIAGLAGYALSSEVVDETTFKIDLNSAEHRKRAGIKESDVLLMIQEFLNAGFKIHLEK*	.	hypothetical_protein	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0078	shell	direct	high	227	0.996	GCA_000834845.1_04642
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	78102	78752	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	78103	78753	GCA_000834845_1_3_79	GCA_000834845_1_3_79	-	95352	.	.	hypothetical protein	MSNVAISKKSIIDAAVVIANELQVAANNATQTYNNHYQNGTHTKADKANMLAATTKLAYFTNNVLNAVNDEKLAGVFYYAIKASKQAPEAFFREAMTNSYSLEKLVYLVKSIKSGKCVYSVADMSGSRVFALIEMINDELETFTNGAVFDLMNEAKKANEIKLDAGYTQANQLINLCERLGLVEKIKGMGAAKNGSQQYRFIKNDFYNYLADAFKA*	.	hypothetical_protein	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0079	shell	direct	high	650	0.998	GCA_000834845.1_04643
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	79075	79602	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	79076	79603	GCA_000834845_1_3_80	GCA_000834845_1_3_80	-	95352	.	pfam03614	Repressor of phase-1 flagellin. 	MTNKTDITYGIPAEVWPRDYSNVEKALMFWRKSLIPVRVTMEDGQVFCMYVQGLMSSRNKVDLCPAPFDKENRIRLPLERISTIESGVTEGIAHDFTGRTTVHPDYVDNRPSRRDFFKICRQAHEMQKSIRVYMADGREIEGGSSGVDACQATLNMGDGRKTVVMFDWVERILPF*	mmseqs_cdd	nonviral_gene	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0080	shell	direct	high	527	0.998	GCA_000834845.1_04644
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	79607	79864	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	79608	79865	GCA_000834845_1_3_81	GCA_000834845_1_3_81	-	95352	.	PFAM:PF11008.7	lipoprotein	MIGAGCDASIFINGETVAKLETGEKATFHLDAGQWIVGASLEGAGLCALNPARQERETITKAGETKVFRVFTSNAGDIDILPTTL*	phrogs_hmm	hypothetical_protein	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0081	shell	direct	high	257	0.996	GCA_000834845.1_04645
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	80089	80367	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	80090	80368	GCA_000834845_1_3_82	GCA_000834845_1_3_82	-	95352	.	.	hypothetical protein	MSEKRAIHCQVQLTEKANDKLETFQNRLRERNIKLSKADVINLVLSNMTMADFDKAATSLEASAKAREKVMKIYESSGMTKEDLADILKRLD*	.	hypothetical_protein	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0082	shell	direct	high	278	0.996	GCA_000834845.1_04646
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	80370	81929	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	80371	81930	GCA_000834845_1_3_83	GCA_000834845_1_3_83	-	95352	.	PDB:1RIF_B	DNA-helicase	MTVRIVSNAVNALISGADDNVKRLVQEMLSYEVEAGDWKGTSTMFNWSKNAFPAGFAKPIAANLLKAGIKCVHVRKEKAPALGKPNPVVNPFPYNPDYAYQDQTVETLVREGMMIAQIATGGGKSNVACKAAARIGRMTLFLTTRSVLMFQMAENFQKSIDYRAENGEPWLKGQKVGVIGSGEFQVSRHINVATVQTLASFLEEPPRDASPEKKRYHLKRRELVKRFLSSVSLLILEEAHESSGSNFYDIARLCINADYRLALTATPFMKDSTEANMRLMAVAGRIEIKVTEKYLIDRGILAKPYFLYHKIAYTPDEVRIRAELASKHLNFRVGMSTAYQKAYQLGIVYNLGRNEAIVREALMYKSHGLNCMTLVRLKRHGQILMEMMKESGLKVDFIYGESNQTTRQAKLSSLAAGRIDVLIGSTILDVGVDVPSVGAVILGGGGKAEVEMRQRVGRGLRAKKNQANVCFITDFIDVSNKYLMSHSYERKHIIDTTPGFAEGVLPVGSTFDFTVLNRE*	rep_hall_hmm	common_virus	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0083	shell	direct	high	1559	0.999	GCA_000834845.1_04647
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	82039	82692	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	82040	82693	GCA_000834845_1_3_84	GCA_000834845_1_3_84	+	95352	.	CDD:cd16403	ParB-like-protein	MEVANLRPNPWNTNSVGAQNFEKLKGSIEKLGFFKPILARELDGGIFEILGGEHRWRAAMEQGISTVPVISVGKINDLVAKQMSLVDNERYGEDDQVALQRLIEEIQSEIDYRLSDIAPYDDEMAATLAKASVIDLEALEALSRGDDEPIEEDKREKTERVGAEHQTMRFKVTFDASDRVADTIKTIIKEQGINTGNEMENAGEALVWLVDYYKERM*	common_virus_hmm	common_virus	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0084	shell	direct	high	653	0.998	GCA_000834845.1_04648
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	82692	83360	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	82693	83361	GCA_000834845_1_3_85	GCA_000834845_1_3_85	+	95352	.	CDD:cd16403	ParB-like-protein	MTKNFEIVYRNPAELIPYEMNAKKHDEQQIRDLAAAIKKRGFDQPITVDKHDVIITGHGRREAALLAGLERVPVIVRDDLSEEEVKAKRLEDNRLASIDYDAIKLQQELESLVLGDVEVFGFEERELNVLVGSMTEEMETGALVLDLGEETERQKEEHTEISREVAAEEVRVIDVLGFKTLPAGSAIVVGDLLAHMEEITGECGVDAFVAYAEKVSSGELAA*	common_virus_hmm	common_virus	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0085	shell	direct	high	668	0.999	GCA_000834845.1_04649
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	83357	83995	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	83358	83996	GCA_000834845_1_3_86	GCA_000834845_1_3_86	+	95352	.	COG2401	ABC-type ATPase fused to a predicted acetyltransferase domain  [General function prediction only]. 	MSKYTINVSFQTRVNKTMRTLEIAESFGLGLDEKEWTLYDNLELEVKQGDVVYITGQSGSGKSVVLRELQRQMKDEGLSVASIDDFTFNNEVNVIDQLGKTTSDALGLLSMAGLNDAYLFVRKPSEMSDGQKYRLKIAKLIESGAKVWAADEFGAVLDRVTAQVVASNLQRAARKVGATVMVATTHEDLKNALRPDMQITKHYKERVKVEYA*	mmseqs_cdd	nonviral_gene	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0086	shell	direct	high	638	0.998	GCA_000834845.1_04650
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	83988	84242	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	83989	84243	GCA_000834845_1_3_87	GCA_000834845_1_3_87	+	95352	.	.	hypothetical protein	MPDLKIVELKPSKEADNNNVEVIRLLEEALQHAREGKSQSLALLMINNDGSVLDCWHNGGRPYVMVGAMESLRLDFINANIERR*	.	hypothetical_protein	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0087	shell	direct	high	254	0.996	GCA_000834845.1_04651
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	84248	85138	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	84249	85139	GCA_000834845_1_3_88	GCA_000834845_1_3_88	+	95352	.	PFAM:PF12568.7	ABC-transporter-ATP-binding-subunit	MTDIIIKRYRPEEFPRHLDFLERMTVTKGTVEDWHALKSLHYKTDGKPFAPTYYRCELDDRLVGVVVMAYPKLLLAPRHRMFPKLKPTTNTTVANQYWGRYVNNNFAVISRSVVDTQYRGVGVSYRMINLVSRMHDRPIIEIQSSMSKYNPFAMKAGFQFIRPERPKSYESALRVFQRHFRSDPGDNEAIVKELFAMSESRRRRALRDLVADYHKNSSLAKAGRNRGTTIQDIADSLVDEASIVKLLKDIHNLSFTSPLYGVYRNPDFGRQLPDTLPLLAFDKQPLNKPLEIALPA*	phrogs_hmm	hypothetical_protein	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0088	shell	direct	high	890	0.999	GCA_000834845.1_04652
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	85148	85414	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	85149	85415	GCA_000834845_1_3_89	GCA_000834845_1_3_89	+	95352	.	PF03551.14	Transcriptional regulator PadR-like family	MTLTDKQKDIIKTINLGHERGHLLDLDELLEVLPYKTTKQSMQFSIRALVKKGLVEKGMCRQRGDSGYHRRTLGLTTLGRARAKLLVM*	hhsuite_tools	hypothetical_protein	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0089	shell	direct	high	266	0.996	GCA_000834845.1_04653
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	85610	86251	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	85611	86252	GCA_000834845_1_3_90	GCA_000834845_1_3_90	+	95352	.	PFAM:PF09607.9	DNA-binding-domain	MTVEKDESKTRLTPAEWAEAEAKWTSGEYTLSKLEEEYGIRRETLSRHFKKRGLEKGADSVGKMVRESLKSDAELRAKARAEKIEERRTRYDDWAFALGRMVMHEVATAKKDGKPLATIEDDLKSLQRASGTLAKCFEVSSKALGMDRAENEDDEIPNLVFGELTPSQVAQLRKEDDEPDLIDDDLLESLEEEALSEAEGDSDASGDESDGSV*	phrogs_hmm	hypothetical_protein	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0090	shell	direct	high	641	0.998	GCA_000834845.1_04654
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	86254	87510	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	86255	87511	GCA_000834845_1_3_91	GCA_000834845_1_3_91	+	95352	.	PDB:5OE8_A	Large-Terminase	MAIPSSLSLVQLHSGQMQVFQSPHRFKVVCAGRRWGKSRLSISTIIRAAAKEKKQRVWYVAPTYQMARQILWDDLQEVLPRKWVRKKNDTTMTIVLKNGSEIALKGADKPDTLRGVALHFVVLDEFQDMKPDTWYKVLRPTLSSTRGGALIIGTPKGFSEFHKLWTIGQNKDLQRKGQWKSWQFVTADSPFVPSAEIEAAKNDMDPKSFAQEYLASFENMSGRVYYPFDRNVHVKPLQFNPKLPIWVGQDFNIDPMSSVILQPQPNGELWAVDEVVLFSSNTAEVCDELERRFWRWKSQVTIFPDPAGAYRQHARGESDVDIFKEKGFLRVDYPKKHPPIADRVNAVNRMLMSASGETRLYIDPKCKHLIDSLEKVIYKPGSRDMDKTGGIEHSADALGYPVHRRYPVKNRVILGGSR*	hallmark_hmm	common_virus	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0091	shell	direct	high	1256	0.999	GCA_000834845.1_04655
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	87544	89118	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	87545	89119	GCA_000834845_1_3_92	GCA_000834845_1_3_92	+	95352	.	PDB:7Z4W_L	Portal-Protein	MELTDKQIKDLVARRHPEYEKKKEHWDFLASTYAGGRAWFNDNIFRYFKEGDQEFKERLERAYRFNHTREVVNLINKYLFKEVIHRNTDEAPEQIRNFWKRATRQNASIDAFMAAIDLQSSIYGRIWVVVDSTMNVDVESVADEKKNDARAYAYWISPQQLLDVAWDEDGNMLWALIVEIARDDEDPFTSTGQEYQRYRLWTQNEWYLFREEVKKGSGNSGRRQAKVVLEDSGEHNLGVVPVFPVDCIGESESPYFSPSLIDDIAYLDRAVANYLSNLDAIIQDQTFSQLAIPVQSLLPGDENHTKVLEMGTKRVFTFDSESGNQPFYLSPDPKQAQMIITTIKTVINEIYHSVGVAGERTKQDNAQGIDNSSGAAKMYDFQRVNSLLVTKAERLERAERQMMQLAAKWMGVELDEDHSLIAYPESFDIRGLTDEFAVAEKLSLLQAPDSVRRHQMEMLIEKVFPNISEAMQKEFQKDLLKFPPKNDLNTLENKSVLTYDRNISQESGQDQPRGNGDSSTQETE*	hallmark_hmm	common_virus	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0092	shell	direct	high	1574	0.999	GCA_000834845.1_04656
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	89141	90037	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	89142	90038	GCA_000834845_1_3_93	GCA_000834845_1_3_93	+	95352	.	PFAM:PF06810.10	minor-structural-protein-	MNLWQMLMARRGLMDAAEAHERGGAGGGAPAGDNEQGNQDPGKQGEQKEQPKGDDDEYAGMTQEELLAELRKSKKAGADLLKENMKRKEKERTLADQLAQYGDIDPARARQLLEAEQAAETARREAEQAELERRGEFDAVKKQMIEAHQAELAQRDERYSALESENAELKAQLVEMTVGASFSGSAFLRDKVLMTPAKARVIYGSHFEVGEDGSVVGFDKPAGQKERAVLVDGEGKPLPFESAIERILRADPEADALLRSEAKQGAGSNSKPTHKVNQPKSKSTMDKLTSGLGKIGLK*	hallmark_hmm	common_virus	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0093	shell	direct	high	896	0.999	GCA_000834845.1_04657
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	90064	90870	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	90065	90871	GCA_000834845_1_3_94	GCA_000834845_1_3_94	+	95352	.	PDB:3J4U_G	Major-Capsid-protein	MPLLRDEAEKLSNNELEQGVIETIIDRDDLFAVLPFMKINSKAYLYNREATLSEATFIDVNDTITEGAATFTEHVAKLRILAGDVDVDKFLATTMSDTNNQLAIQVRQKVKGLARAFRRNLILGDSTTNTKAFDGIPKLMHDDQKIDIEGASMTFSMFDELVDAVKDLGADCIMMRSEHLRAYRALLRTVSLGPSEIMMENFGRPMLCHNGVPFIVNDFIPTDAGKASIYCLHLSEENGVTGLSRVKWYCSLANKHDKAIAALTNVKI*	hallmark_hmm	common_virus	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0094	shell	direct	high	806	0.999	GCA_000834845.1_04658
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	90945	91607	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	90946	91608	GCA_000834845_1_3_95	GCA_000834845_1_3_95	+	95352	.	UniProt:tr|Q7Y4V5_BPR69	head-outer-capsid-protein-	MPEQKMKITEEAFSDFTGHMCRAGFTNSISNEPLSERQQNHLAACFRAIPFTQSVTITPTAPSVLVGKTVQLSAGITMSKSADSFTWTSDNDRVATVSGTGLVTGVTPGKVKITATDKQTQLSASVEVIVKPVSVESVTVTPDSTSVEKGKSVKLRVDVQPSNATNKKVTWTSKNSDKATVDQNGNVAGVAVGTATIEVVSQDGSHKATATVEVTAAPAA*	hallmark_hmm	common_virus	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0095	shell	direct	high	662	0.998	GCA_000834845.1_04659
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	91651	92085	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	91652	92086	GCA_000834845_1_3_96	GCA_000834845_1_3_96	+	95352	.	.	hypothetical protein	MKPAKIRLLEPQFLGYTGILCGIQFVDGISVAELRFIDQQRICASMRATTVEGKNVSPSAAYSSRNDLTADDIVETAAPDIVPMKRGTAEVEAKPVQRFTREELESIADCEGIAGLRQIGNQIGVKAKGIVEMIEGILKAQGGE*	.	hypothetical_protein	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0096	shell	direct	high	434	0.998	GCA_000834845.1_04660
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	92085	92918	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	92086	92919	GCA_000834845_1_3_97	GCA_000834845_1_3_97	+	95352	.	.	hypothetical protein	MAQIDTYRSGEAVSLSFAFNVLDIESATYTVRDGAGAIIVDNEPLDITEGQMSIPVVVSAEHNLLSDKERDLRHVIVKAVASGLTHEERKMYVLLNSFELSIPGQSFATVADAQMQAIDMLNGDTLLADGEGLMRKRLIEATRRVKTLPFSIRKVLRIDFDRYDRPQNMLNVYDIPWGADGAYRHDLIDWEQMTPEKFDEFPDYFKQALMLAVVNEACEIANGNDVAAAREDGILSESIGETTNMYRTGKAANVQVARSTWRLLVSYINNRMIVRRA*	.	hypothetical_protein	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0097	shell	direct	high	833	0.999	GCA_000834845.1_04661
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	93016	93360	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	93017	93361	GCA_000834845_1_3_98	GCA_000834845_1_3_98	+	95352	.	.	hypothetical protein	MNISWQAEIAIYRLGSKNVYGEAQLQFVRKTNVGVVKFEQSNEKSSVRADSSGSRGKANLELFDAVLVIPLEAAVQLDDVLILEGQKLKVSSVHRRWGLRGRPGHLEVGANIWV*	.	hypothetical_protein	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0098	shell	direct	high	344	0.997	GCA_000834845.1_04662
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	93351	93824	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	93352	93825	GCA_000834845_1_3_99	GCA_000834845_1_3_99	+	95352	.	PFAM:PF11114.7	type-I-neck-protein	MGLKYDAHHFKRAGDRLNNSQKAFKRYLIRDMEKLARLVERLARAMAPLETGSLESAIFARVVKEGYTGLRIELSVSGAKPREGHPGVEVGDYAEYMELGKYRLGYLSRMKSVTNPPVAGVKPRVGPLFLERAVQISEKQFTQTIAEAARKAGFTRG*	hallmark_hmm	common_virus	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0099	shell	direct	high	473	0.998	GCA_000834845.1_04663
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	93826	94209	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	93827	94210	GCA_000834845_1_3_100	GCA_000834845_1_3_100	+	95352	.	.	hypothetical protein	MFIEAFASLMQKAKIGTVGTDIFCHYMPANVKSGVLLVTPNTGITIDHELKGFYHDSFTVIVRNATITKTVAKANKIMDMFPVEETVSDGVYFRLVRPMSMPITYPKNEGSLIEAGIPIEFAGYLLN*	.	hypothetical_protein	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0100	shell	direct	high	383	0.997	GCA_000834845.1_04664
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	94284	95030	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	94285	95031	GCA_000834845_1_3_101	GCA_000834845_1_3_101	+	95352	.	Uniprot:A0A0D5A258_9RHIZ	major-tail-protein	MSNTHVKNIKLGACKVSFGGVDLGYTKGGVQVEVATETLKVTVDQLGQTTISELVQGRNITITAPLAESVLQNMVDLMPGSTLSEEENSVTITSAQGVNLIDVAKELVLTPQDTTDYVLTIPKAATAGNFTMTYQSDDVRVFSVQFTAYPDDDGVLGKMSGPKPVKTVSISPESPEVKAGETVQLTAQITPADAGDKTGVWESDNQEKATVDQTGLVRGVAEGSANISFTSNSGGKKATKAVTVNSAQ*	hallmark_hmm	common_virus	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0101	shell	direct	high	746	0.999	GCA_000834845.1_04665
GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote	cenote	CDS	95090	95350	GCA_000834845.1	CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845.1_CP009934.1	GCA_000834845.1|CP009934.1	GCA_000834845_1_3	GCA_000834845_1_3@C0	95091	95351	GCA_000834845_1_3_102	GCA_000834845_1_3_102	+	95352	.	.	hypothetical protein	MTKLLDLDSILPPKKSIKFGGQEYPIVEMTVGLFVSIKQMEGKDLQNMSPVEQVTAYADLVRKVIPSVPDAVLEKLTVPQLQQIFTF	.	hypothetical_protein	C0	95353	0	95353	GCA_000834845.1|CP009934.1@region_1_95353@tool_cenote_CDS_0102	.	unmatched_CDS	none	0	0	.
GCA_000834845.1|CP009935.1@region_1310527_1331430@tool_cenote	cenote	tRNA	1320110	1320186	GCA_000834845.1	CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845.1_CP009935.1	GCA_000834845.1|CP009935.1	GCA_000834845_1_1	GCA_000834845_1_1@C88	9585	9661	tRNA-Met	tRNA-Met	+	4501786	.	tRNAscan-SE score: 77.0	Met	NA	tRNAscan-SE	.	C88	20904	1310526	1331430	GCA_000834845.1|CP009935.1@region_1310527_1331430@tool_cenote_tRNA_0001	.	.	.	.	.	.