core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3913514	3914734	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	1	1221	GCA_000953455_1_1_3756	GCA_000953455_1_1_3756	+	4696984	.	PRK10885	multifunctional CCA addition/repair protein. 	MQIYKVGGAVRDRLLGRPVSEVDWVVVGASAEQMLELGYRPVGADFPVFLHPQTGEEYALARTERKSGRGYGGFTFHASPDVTLEQDLIRRDLTVNAMAEDDQGNLIDPYNGQQDLKARILRHVSPAFAEDPLRVLRVARFAARYAPLGFSVAPETLMLMRQLAESGELAHLTAERSWKEISRALMEPRPEVFVQVLRDCGALAALLPEVDDLFGVPQPQAHHPEIDTGVHVLSVLHQCAEHDQPLNVRWACLLHDVGKGLTPEAEWPRHIAHEHKGLRLIEAINARCKAPRECAELAMLVGEFHTHGHRALELRPSTLLELLQRFDVFRRPQRFVEFVAACEMDARGRLGLEQRDYPQAAYLLGAAEAARQVPVKPLVEKGFKGAELGEALNRERLQALKIYKDQ*	mmseqs_cdd	common_virus	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0001	persistent	direct	high	1220	0.999	GCA_000953455.1_03907
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3915108	3915641	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	1595	2128	GCA_000953455_1_1_3757	GCA_000953455_1_1_3757	-	4696984	.	COG0801	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme transport and metabolism]. 	MPLTRVFLGLGSNVEREAHLTAGLDALAGLLSDMRCSPVFESHAVGIKSGNFFNLVVVGETELPLLELDRRLKFIEADNGRYAPERKGLPLDIDVLLYGEQVGNFNGLILPRAEILKNAFVLWPLALLAPQLQHPVAGRSFAELWASAQIDQQLWPAAFQWRGTELTPPELLQARPA*	mmseqs_cdd	nonviral_gene	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0002	persistent	direct	high	533	0.998	GCA_000953455.1_03908
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3915632	3915988	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	2119	2475	GCA_000953455_1_1_3758	GCA_000953455_1_1_3758	-	4696984	.	PRK11593	bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase. 	MDRVFIEGLEVDTVIGAYDWEREIRQCLRLDLQMAWDNRPAAAGDDLNLALDYASVSTRIQAFAAESQFILVETFAERLVQTLMEEFNIPWMRLKLTKPGAVPAARGGVGVEIERGCL*	mmseqs_cdd	nonviral_gene	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0003	persistent	direct	high	356	0.997	GCA_000953455.1_03909
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3916064	3916633	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	2551	3120	GCA_000953455_1_1_3759	GCA_000953455_1_1_3759	+	4696984	.	PRK00220	glycerol-3-phosphate 1-O-acyltransferase PlsY. 	MFWLLAILAYLLGSLSFAILLSRLAGGPDPRASGSGNPGATNMLRVAGKKLAVMTLIGDLLKGLLPILIAKLLGLSLHQQAWIGLAAVGGHLYPLYFRFRGGKGVATAAGMLLGLYPPAALLALAAWALVFLLTRISSLASLIATPLTLPLLAWQQPAALLPACVLTGLIVWRHRSNLRDLFAGRERRF*	mmseqs_cdd	nonviral_gene	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0004	persistent	direct	high	569	0.998	GCA_000953455.1_03910
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3916727	3917752	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	3214	4239	GCA_000953455_1_1_3760	GCA_000953455_1_1_3760	-	4696984	.	COG0533	tRNA A37 threonylcarbamoyltransferase TsaD [Translation, ribosomal structure and biogenesis]. 	MLVLGLETSCDETGVALYDSERGLLADALFSQIDLHRVYGGVVPELASRDHVKRMLPLIRQVLDEAGKQASDIDALAYTAGPGLVGALLVGASCAQALAFAWGVPAIGVHHMEGHLLAPMLEEQPPAFPFVALLVSGGHTQLVRVDGIGQYQLLGESLDDAAGEAFDKTAKLMGLNYPGGPEIAKLAEQGTSGRFVFPRPMTDRPGLDFSFSGLKTFALNTWQQCRDSGDDLDQARRDIALAFQQAVVETLTIKCKRALKQSGLNSLVIAGGVSANKALREHLERMLGEMKGKVFYARPRFCTDNGAMIAYAGCQRLLAGQHEDLAIKVQARWPMESLPAL*	mmseqs_cdd	nonviral_gene	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0005	persistent	direct	high	1025	0.999	GCA_000953455.1_03911
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3917956	3918171	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	4443	4658	GCA_000953455_1_1_3761	GCA_000953455_1_1_3761	+	4696984	.	COG0828	Ribosomal protein S21 [Translation, ribosomal structure and biogenesis]. 	MPAVKVKENEPFDVALRRFKRSCEKAGVLAEVRSREFYEKPTAERKRKAAAAVKRHAKKVQREQRRSVRLY*	mmseqs_cdd	nonviral_gene	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0006	persistent	direct	high	215	0.995	GCA_000953455.1_03912
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3918319	3920322	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	4806	6809	GCA_000953455_1_1_3762	GCA_000953455_1_1_3762	+	4696984	.	PDB:5IKN_F	DNA-polymerase	MAGLIPQSFIDDLLNRTDIVDVVSSRIQLKKTGKNYSACCPFHKEKTPSFTVSPDKQFYYCFGCGAGGNALGFVMDHDQLEFPQAIEELAKRAGMDVPREESGRGHKPRQPVDSPLYPLLNAAAEHYRQALKSHPQRKYAVDYLKGRGLSGEIARDFGIGFAPPGWDNLLKQLGADALQQKVMIDAGLLIENAENGRRYDRFRDRIMFPIRDSRGRVIAFGGRVLGDDKPKYLNSPETPVFHKGQELYGLYEARKHNRDLDEIMVVEGYMDVIALAQQGLRNAVATLGTATSEEHLKRLFRIVPSVLFCFDGDAAGRNAAWRALESTLPSLQDGRRARFLFLPDGEDPDTLVRAEGTDAFRARINQHAQPLADYFFHQLCEEADPRSLEGKAHLVTLAAPLIDKIPGNNLRALMRQRLSEITGLSSEALSQVAGSAPRSHAPSASSQTPSSDYPDYGDIPDSAYYDSLPDVGSYEQPAPPRQHYERSSESGKGSWKKDGDGKWNKKGKGDFAPRAPRTAVSVESPHLIALRTLLHHPHLAQKVEDVSHFADEDDTYAQLLVALVGALQKTPNLRSLQLIARWHGTEQGRLLRALAEKEWLIQGDNLEQQFFDTITTLANSQSQRRREKALRSIIHKSPSELTDEEKTLLREHYSLTSSQSSKPPTGA*	common_virus_hmm	common_virus	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0007	persistent	direct	high	2003	1.0	GCA_000953455.1_03913
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3920390	3922237	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	6877	8724	GCA_000953455_1_1_3763	GCA_000953455_1_1_3763	+	4696984	.	PDB:4XLN_L	DNA-directed-RNA-polymerase-subunit	MSVKAQQQSRIKELITLGREQKYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGIPVHESAPDADALMLADADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEEGIREVMSAIAHFPGTVDGILAEYTRVTTEGGRLAEILSGYIDPDDGSVPDEAAAPVPVKEGAAAEASDEEEEDESGDDEEEEGDGGPDPEEAARRFTAVAEQLEKARKALKKHGRGSKQAIEELATLAELFMPIKLVPKQYDALVTKVRDALDRLRAQERAIMQLCVRDARMPRADFLRLFPGNEIDMDWAANLAKGKAKYAEAIGALQADIQRCQQKLADLEAECNLTLAEIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATVESLKEATREVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSEHLRSFLDE*	common_virus_hmm	common_virus	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0008	persistent	direct	high	1847	0.999	GCA_000953455.1_03914
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3922400	3923311	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	8887	9798	GCA_000953455_1_1_3764	GCA_000953455_1_1_3764	+	4696984	.	cd01007	The type 2 periplasmic ligand-binding protein domain of the sensor-kinase BvgS and histidine kinase receptors, and related proteins. This family comprises the periplasmic sensor domain of the two-component sensor-kinase systems, such as the sensor protein BvgS of Bordetella pertussis and histidine kinase receptors (HisK), and uncharacterized related proteins. Typically, the two-component system consists of a membrane spanning sensor-kinase and a cytoplasmic response regulator. It serves as a stimulus-response coupling mechanism to enable microorganisms to sense and respond to changes in environmental conditions. The N-terminal sensing domain of the sensor kinase detects extracellular signals, such as small molecule ligands and ions, which then modulate the catalytic activity of the cytoplasmic kinase domain through a phosphorylation cascade. The periplasmic sensor domain belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	MPAIVLLCLAYRMTTALALTLNEDERTWLAAHPELRLGVDVSWPPFEFRDEQGNDHGLTAAYVRLIEERLDVKLQPVEPSNWSAILEQPHMGQVDQLPGVMSTPKRQEYLIFTRPYLDLPIAILARNGGPQSRKLNERYGLKIAVVADYAPHELLRQQHPDLNLLPLRNIAAALQALATNQVDAMVGDLASSVWSLRQLKLDGVYISGETLYRYQLAMAAPRGQSMLVGTRQTLRRAQHRRNRCLAGTLGRQRAGQTQRLARNPALRPASPARSAGGHRHHPAHQPPPETRDAQPRSAGAGTT*	mmseqs_cdd	nonviral_gene	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0009	persistent	direct	high	911	0.999	GCA_000953455.1_03915
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3923582	3924382	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	10069	10869	GCA_000953455_1_1_3765	GCA_000953455_1_1_3765	+	4696984	.	COG5001	Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain  [Signal transduction mechanisms]. 	MRVRDIVTLQQRDDHQVIRGLMVDISEAKQSVQALRLSEQKFVSVFQQCPDILIIARRVDGVLLEVNTAFTEQTGISVEQAIGKTATELDLWGVPGIGPSLLPRISALLQRYNLAPELLQLEIIENFIMNQAGEALDILHRLKQLGVQLAIDDFGTGYSSLSYLKCLPLDVLKIDQSFVRSLPDDPHDLAITRAIIALGNSMQLTVITEGVAGTLPGRRRLPADPGLRGQLPAFRRGLHPEISPTRSSGWRWRERAGIICRPSGGL*	mmseqs_cdd	nonviral_gene	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0010	.	unmatched_CDS	none	0	0	.
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3924828	3925010	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	11315	11497	GCA_000953455_1_1_3766	GCA_000953455_1_1_3766	+	4696984	.	.	hypothetical protein	MSKRAAFKLFSWLGLAFTAVTVITPYVPSAAVHEAAFLALIGLYVPIAGLIWRYAPQQAN*	.	hypothetical_protein	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0011	cloud	direct	high	182	0.995	GCA_000953455.1_03917
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3925166	3926083	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	11653	12570	GCA_000953455_1_1_3767	GCA_000953455_1_1_3767	+	4696984	.	COG4823	Abortive infection bacteriophage resistance protein  [Defense mechanisms]. 	MPHAPTLYSKPAKNPHALLRHLRTKGLNTRGQRDKAIKALEFIGYFRLLIYMRPLQDAAKQFHPGVRFDDILALYDFDRRLRLVCLDAIDRIEVAFRAAIANTLANDRSCGPHFYLDAIHFQGLDEHRDFLKNVLGLRIKNAPIKHYYDTYNSPPFPPIWAVLEAMSIGQLSRLLAGLHLDHRKSVAACFGYDESVVCSWLKSLTLLRNLSAHHGRLWNTSITSDTPVFAKAIKQEFPAHTDRGRVFARAVAVQALLRVVDPTADWKDKFKGLMATLPTATLAKAGMTPAILGLVPGWETRPFWN*	mmseqs_cdd	nonviral_gene	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0012	cloud	direct	high	917	0.999	GCA_000953455.1_03918
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3926131	3926586	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	12618	13073	GCA_000953455_1_1_3768	GCA_000953455_1_1_3768	-	4696984	.	PFAM:PF00929.23	Rnase-H	MITRIYLDTEFTSLNRYTCKLISLALVVPGGPEFYVELIDAWEEGDCSDFVQEIVLPQLDLVAYGRTTEQARIELLDFLQELGQVEIISDAFDWDWPLLVWLAGPGGIPDGVESDQACIDGEILEEIGEPPHHALQDARMLAQLVERSNLA*	phrogs_hmm	hypothetical_protein	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0013	cloud	direct	high	455	0.998	GCA_000953455.1_03919
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3926583	3927200	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	13070	13687	GCA_000953455_1_1_3769	GCA_000953455_1_1_3769	-	4696984	.	COG1011	FMN phosphatase YigB, HAD superfamily [Coenzyme transport and metabolism]. 	MITDRAVIFDVFGTLLKIQGGRHPYRQLLQLGRAQGRRPRPDDAEVIMRSPLDFSQMAAHLGIEVAVDQFVDLEQQLADEVEGIEPFDDGLAAVDLLQGEGVRVGVCSNLASPYCAAILRHFPTLDAYAFSCDLGVIKPSPGIYEMTCEMLGTPPAETLMIGDSLRCDRDGPRAVGIRGFLLDRVGGGDYTDLASFAGHVMRARK*	mmseqs_cdd	nonviral_gene	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0014	cloud	direct	high	617	0.998	GCA_000953455.1_03920
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3927190	3927606	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	13677	14093	GCA_000953455_1_1_3770	GCA_000953455_1_1_3770	-	4696984	.	pfam18143	HAD domain in Swiss Army Knife RNA repair proteins. Family of HAD domain phophoesterases observed in large eukaryotic proteins with predicted role in RNA repair, the so-called 'Swiss Army Knife' repair proteins. May be involved in phosphate group removal during RNA re-ligation.	MVPLLPKPHQRLRSLPRLVEILRDFTQVEVVISSLWREKLSLDELRELFPTEIRSRIIDVTPIVERVDGWLPARREGEILEWLESTGRIGEPWLALDDAGWQFTQYRDRLVECVFYDGLDDRIEALLRKKLAEVSCDN*	mmseqs_cdd	nonviral_gene	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0015	cloud	direct	moderate	408	0.978	GCA_000953455.1_03921
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3927622	3928551	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	14109	15038	GCA_000953455_1_1_3771	GCA_000953455_1_1_3771	-	4696984	.	PDB:1ZR4_E	gamma-delta-Resolvase,-site-specific-recombination	MKIGYARVSTRDQKADLQVDALKQAGCERIYQDIASGAKSARPELDKLLANVRPGDAVVIWKLDRLGRSLKHLVELVGELAERKVGLQSLNDPIDTTHAQGRLVFNLFASLAEFERELIRERTQAGLSAARARGRIGGRPKGLPAKAEATAMAAETLYREGRLSVSAIGEKLHISKSTLYSYLRHRGVEIGAYQKSARSRDQQPSAASPAEPPAAERVATVTLRLAVVNNSKFVRGRKRATENIERYCLEPYGMKRLDAGHYELTIPYRSDDELDKSVHDLLTEISQEADMRNCFVEMGAWEEDTEKRW*	common_virus_hmm	common_virus	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0016	cloud	direct	high	929	0.999	GCA_000953455.1_03922
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3928753	3928992	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	15240	15479	GCA_000953455_1_1_3772	GCA_000953455_1_1_3772	+	4696984	.	pfam16762	Ribbon-helix-helix domain. This ribbon-helix-helix domain binds to DNA and may be a part of a toxin-antitoxin system.	MNTIRWNVAVSADTDQSLRMFLASQGGGRKGDLSRFIEEAVRAHILELSAEQAKAANAHLSEAELTNAVDEALDWARKR*	mmseqs_cdd	nonviral_gene	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0017	shell	direct	high	239	0.996	GCA_000953455.1_03923
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3928992	3929402	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	15479	15889	GCA_000953455_1_1_3773	GCA_000953455_1_1_3773	+	4696984	.	cd18715	uncharacterized subfamily of the VapC (virulence-associated protein C)-like family of the PIN domain superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include FitB toxin of the FitAB TA system, eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The PIN domain belongs to a large nuclease superfamily. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	MRVVLDTNILFSALISPHGAPDAIYRAWRAARFEVVTSRMQLDEIRRASRYPKLQAILQPAKVGAMINNLQRAVVLERLTIEVEADDPDDSFLLAMALAGDADYLITGDRRAGLLQRGHIERTRIVTPAVFCVEVL*	mmseqs_cdd	nonviral_gene	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0018	shell	direct	high	410	0.998	GCA_000953455.1_03924
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3929406	3932399	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	15893	18886	GCA_000953455_1_1_3774	GCA_000953455_1_1_3774	+	4696984	.	PFAM:PF01526.16	Tn3-transposase-DDE-domain-protein	MPVGFLTQEQRDGFGRYVDSPSREELERYFHLSDEDREAIQVLRGNHNRLGYAVLLTTVRFVGVLPDKPAAVPVEVLQVLCRQLAIPDPDCLQRYSDHRRWIHATDIQNRFGYRHFTDPGIGFRLSRWLYALCWTGTDRPGVLFERATSWLFTQKVLLPGVSQLERFIAQLRSRVEERLWFTLGRSVTEEQRLQLQDLLTVAEGNRSSRLDQLRSGPVMVSGPALIRALRRLDDVRGIGITLPAAAHIPPSRIAALARFANTAKVTAINRLPASRRMATLVAFALCLEATAHDDALEVLEALLRDLFSNAEKADKKARMRSLKDLDRSAATLAAACKVVLDSSISDDNVRARLFNDLPRTTLEKALEEVNALIRPVDDVYFLALEARYRSVRRFLPDLLKHIRFGFSPAGKGVAASLEWLQLNLPRRKPEDDAPQEIVAKAWQKHITREDGSLDMGAYVFCTLDALRTALRRRDVFVSPSWRYADPRLGLLDGAEWLAARPIICRSLGLTIDAKTTLDALSVELDATWLAVAARLPDNPAIQLSENTEGKTELSLGALDKLDEPCSLLQLRAAVSDLMPRVDLPEILLEIAARTGFSEAFTHVSERNARADNLVTSLCAVLLGGACNTGLEPLIRTDNPALRRDRLSWVSQNYIRDDTLSAANAILVGAQSQLELAQVWGGGEVASADGMRFVVPVRTVHAGPNPKYFGTGRGVTWYNLISDQFSGLNAITVPGTLRDSLVLLAVVLEQQTELQPTQIMTDTGAYSDVVFGLFRLLGYHFSPRLADVGGTRFWRTRPDADYGKLNGLARQSVKLDLIAEHWDDLLRLAGSLKLGRVPATGIMRTLQTGDRPTRLAQALAEFGRIEKTLHTLTYIDDESKRRATLTQLNRGEGRHSLARAVFHGKRGELRQRYREGQEDQLGALGLVVNIIVLWNTLYMTAAVERLKQHGYPVLEEDLARLSPLIYEHINMLGRYSFAVPEEVARGELRPLRNPDDDL*	common_virus_hmm	common_virus	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0019	shell	direct	high	2993	1.0	GCA_000953455.1_03925
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3932412	3932624	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	18899	19111	GCA_000953455_1_1_3775	GCA_000953455_1_1_3775	-	4696984	.	7EU1_L	DNA-directed RNA polymerase IV, RNA-	MSAIVLESVLTCPRCGFAKPETMPTDACQFYYECSNCKALLRPNPGDCCVFCSFGSVKCPPIQQQLGCCS*	hhsuite_tools	nonviral_gene	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0020	shell	direct	high	212	0.995	GCA_000953455.1_03926
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3932632	3932907	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	19119	19394	GCA_000953455_1_1_3776	GCA_000953455_1_1_3776	-	4696984	.	TIGR02052	mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403). [Cellular processes, Detoxification]	MRKLLIAVLFALPFVALAAPPKTVTLDVQNMTCGLCPITVKKSLEKVSGVSDVQVNFDQKTATVTYDPDKAQPEALTEATANAGYPSTVQK*	mmseqs_cdd	nonviral_gene	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0021	shell	direct	high	275	0.996	GCA_000953455.1_03927
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3932920	3933270	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	19407	19757	GCA_000953455_1_1_3777	GCA_000953455_1_1_3777	-	4696984	.	PRK13751	putative mercuric transport protein; Provisional	MGMQLTGKGSLVASSLTAIGASVCCVGPLVLLALGVGGTWVGALTMMEPLRPLFIGLTLLFLGLAFRKLYLVPQVCTPGTPCADPRTLVRQRLVFWIVSVLLLGLLAVPWLAPLFY*	mmseqs_cdd	nonviral_gene	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0022	shell	direct	high	350	0.997	GCA_000953455.1_03928
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3933345	3933743	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	19832	20230	GCA_000953455_1_1_3778	GCA_000953455_1_1_3778	+	4696984	.	TIGR02051	Hg(II)-responsive transcriptional regulator. This model represents the mercury (II) responsive transcriptional activator of the mer organomercurial resistance operon. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(8)-Cys-Pro, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix. [Cellular processes, Detoxification, Regulatory functions, DNA interactions]	MATELTIGKLADAAGVNVETIRYYQRRGLLDEPAKPLGGHRRYPVDMVKRLRFIKRAQALGFTLSEVGGLLTLDESCACAETRARAARKLALIEQKMADLVVMQQLLGELVQQCDAGDGGTICPIIEALIRE*	mmseqs_cdd	nonviral_gene	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0023	shell	direct	high	398	0.997	GCA_000953455.1_03929
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3934152	3935072	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	20639	21559	GCA_000953455_1_1_3779	GCA_000953455_1_1_3779	-	4696984	.	COG1230	Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]. 	MAHEHNHNTEAIGDKRLIAAIGVNAALTLAQVVGGILSGSLSLIADALHNLSDAASLVIALIARKIGRRPPDAFKTFGYRRSETIAALINLVSLIIIGLYLIYEAIGRLYSPQPIEGWTVVVVAGIALIVDIATALLTYTMSKDSMNIKAAFLHNVSDALASVGVVVAGTLILLYGWYWTDTVVTLMIAGYVLWQGFSMLPKTIHLLMEGAPEGVSIADIINVMEQVDDVESVHHVHVWEIAEHTIALEAHVVIKKASLPDIERVKTDLKRVLHEQFKVSHSTLEMELDGSVCIDTRQADNHRSEA*	mmseqs_cdd	nonviral_gene	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0024	cloud	direct	high	920	0.999	GCA_000953455.1_03930
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3935143	3936924	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	21630	23411	GCA_000953455_1_1_3780	GCA_000953455_1_1_3780	-	4696984	.	PDB:3VQ6_A	RNAseH,-DNA-binding,-DNA-cleavage	MNPRRQAAILQQRRTHHLASNADAYAFFNLLTGPELFDQVESLLPDHRERLFPPTETLSMFMAQALSADRSCQRAVNELAVKQLRAGLKPCSTHTGGYCRARQRLPVEMVSSLVRNTGNLISSNARSGQWMGRPVRLVDGTTVVMPDTQANQDAYPQSRGQKPGLGFPICRMVGIVCLSSGALLNAALGRFRGKGGDEQTLLRSMLDTLNTGDVLLGDAFYATYFLLCELQRRGIDGVFEQYGARRRSTDFRRGTRPGTRDHLITLEKPRKRPAWMSQASYEQAPDQLEVRELKRNRGSSGAYSARCAQQQMNIRRQVCRPKRKLVPGSERFELVAHMLRKRLSPEQIAGKLRSMTIPNLRDAYVCRETIYNAIYALPVGELRKELIVCLRQGKTTRRPRSGGVDRRGQIPEMVSIHVRPPEIEDRLMPGHWEGDLIKGKANASSVGTLVERTSGYLMLMKMNDATATSAMEGFSAALNSMPLAMRKSMTYDQGREMARHAEITQQTGVAIYFCDPHSPWQRGSNENINGLIRQYLPKGTDLSVHSQEQLNAIALELNMRPRKRFDFKCPIEVMGEVMQEAMAMRHHAPASNQ*	common_virus_hmm	common_virus	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0025	cloud	direct	high	1781	0.999	GCA_000953455.1_03931
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3937211	3937423	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	23698	23910	GCA_000953455_1_1_3781	GCA_000953455_1_1_3781	+	4696984	.	PDB:2QGZ_A	Putative-primosome-component;-Helicase-loader	MLELLDDRYGQRSTLVTSQMPVDNWHELIGDPTLADAILDRLVHNAYRINLKGESMRKRVKKLTAPGASD*	common_virus_hmm	common_virus	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0026	cloud	direct	high	212	0.995	GCA_000953455.1_03932
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3937821	3938558	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	24308	25045	GCA_000953455_1_1_3782	GCA_000953455_1_1_3782	-	4696984	.	cd07404	Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain.  Microscilla proteins MS152, and MS153 are also included in this family.  The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily.  MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases).  The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	MRIHLLSDLHNEFSAFTPEQLDCDVVILAGDIDLKARGVEWAKQSFSGPVLYVPGNHEFYGGHLTWTLEKLRAAQDDRVRVLDRDELILAGVRFLGATMWTDFEATGNPHIAAFSAQTALNDFRQIRAENYRRIRPADLIARSVQTKDWLRDRLAEPFDGPTVVITHHAPTLRSLQGNPHAGTDLDAAFANRWEDLMGSDHVALWVHGHSHTAVDYELAGTRVVSNPRGYPGEETGFCPDLVIEV*	mmseqs_cdd	common_virus	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0027	cloud	direct	high	737	0.999	GCA_000953455.1_03933
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3938561	3939013	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	25048	25500	GCA_000953455_1_1_3783	GCA_000953455_1_1_3783	-	4696984	.	.	hypothetical protein	MPKFLIKTADLPSANLHLVTPISAGRGWLELVKKAVEIAAGEPIASIKEKAGTLDVHIYTRDAAKFPQFNELRQASASTCEICGEPGTLAYHQVRCEDHQGWRTSRPFPPDQLGYIEACEWEEAPPFGREFGAVAGDQKHTPNAVPDAED*	.	hypothetical_protein	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0028	cloud	direct	high	452	0.998	GCA_000953455.1_03934
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3939016	3939276	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	25503	25763	GCA_000953455_1_1_3784	GCA_000953455_1_1_3784	-	4696984	.	.	hypothetical protein	MNVTELIEILKKFPADLEVVVEGYETGLDPIHLVKQADITRNPGLCGSKGFEDWDGEYALAGEIPGHTDNPRQAVAILGRRGHRRS*	.	hypothetical_protein	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0029	cloud	direct	high	260	0.996	GCA_000953455.1_03935
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3939273	3939725	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	25760	26212	GCA_000953455_1_1_3785	GCA_000953455_1_1_3785	-	4696984	.	.	hypothetical protein	MIQTLLQHLERADSGLFVHAPEGTCQRLAEVLGEAGKPLADLTMTEDSGLAIEQLVDQLAVEPGHTIAATLEAASRLVGEPIYVLIDRAERLENSDLTYALKAARDALASSELAGLRLAFFSIDFAALGRMTRLQGAAFFYATLIDGRTL*	.	hypothetical_protein	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0030	cloud	direct	high	452	0.998	GCA_000953455.1_03936
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3939722	3940216	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	26209	26703	GCA_000953455_1_1_3786	GCA_000953455_1_1_3786	-	4696984	.	PF18143.1	HAD domain in Swiss Army Knife RNA repair proteins	MIQRLLFLDFDGVLHPDAVYLTSRGVELRAEGVLFMWAPLLVGALAPHQDVQIVLSTSWARNLGFHRARSVLPAELQSRVIGATWHSAMGRGWPDFIPWDVQTRHEQIQAHLSRLSVPTNWIAIDDDDRGWAEADRDRLILTDPNQGLSAPETLAQLTHKLEHL*	hhsuite_tools	hypothetical_protein	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0031	cloud	direct	high	494	0.998	GCA_000953455.1_03937
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3940213	3940464	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	26700	26951	GCA_000953455_1_1_3787	GCA_000953455_1_1_3787	-	4696984	.	.	hypothetical protein	MTQRLRPTIDLSYGEQEVLQRVLAEPRKIADALSPDDVREHSRIIGVLEEVAAAFAECFFQVVENLPDAEPEQTQQQSRGMSR*	.	hypothetical_protein	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0032	cloud	direct	high	251	0.996	GCA_000953455.1_03938
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3940476	3944948	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	26963	31435	GCA_000953455_1_1_3788	GCA_000953455_1_1_3788	-	4696984	.	PDB:3UPU_B	ATP-dependent-DNA-helicase	MTVFSADKFSSGDIAARAEYFEKGEGILLEDGQEPERSTGGEDYYHRPGADTLLTEYLGQGAQLMELGINPQDGDYAALMSGTNPRTGKSYVTERRQGELQRGTGLAGYSTSFNIDKTLSLVYAALPREQQVLFEKAVMEASRRTMEYAEGKGYFGYRLGAQGVERHAGKMMAAAYLHFTNRNQEPHLHVHVEIPNACLGADGKWRPLDGGEIFKRQAEFAALYDCYLAHALGRDIPQLSKHLESDLEHHGLRVAGISRETVLEFSTRRIEVLQGLDEMGASGAAAATGVAKRSRKGKKAVDAETLRAEWREQLQNLHQELQRGDLTPETKLFAEQLVFRNASVFGEHALDRAAAQLAILHGGEPAIPAIKTGLIRQLGVIELPQEGRHREFTTENYRQLEAELLAYAHGAQRPEARFTIKPLDTEMAIARIEREKGYAMRDEQRAVVRFCTSGARVQIIQGAAGTGKSVSLAALREAYESAGNRVIGLAPSGAAAAELQNSAGIQARTIHSLLMRLENDNAQYREKLRPSDVIICDEAGLADLRTLHKLAGYCDAAGAKLILVGDGRQLEAVGSASVLDMLTAEVGCAELIQIARQKDPADRAISQAWFEGPAEQGGPDALEMMKARGLLKMPADDTRDKPIDLVMRDALQAHAEGTDWQEILLLADRNQSVRSLNNKVREHRFKIGELDKAQQVRIPVETGRGDYADLDLAPGDRIMLRKNQKIDGEPVYNGDRATLTGIERVQTGTDDNGEPIYDTKLTARLDRTKEEVSWNLSDYASIDHAYAMTVHKSQGLTVDRAFYLTSDSTDRRLAYVAYTRSRYACGFYIGNDQESLDTLARNTAAFKSKRCALDADKEFRALIRANAEAGLYEAQPIKTPQPSTKDLLEKAGERFEYPTEPKAEPKVAPEIQVMPATQADHDLSVARGFAVTGLVDLPNDTRLKPGKPYELPADAKRVALLAVPLPLLQNTKEEIENERSGIFRADRERAPERIRELADAERAGRFTHHTVEDPRESAWANPRNGLRKLSECRLASDCGRGRTGVLQDHARDRGRTAAGVRRDGAAAQGQVGSDMPKPRRVWTKAEQQRETQAIRDRVDLRDHAERLGYVQVSGSGARVRMENKGLDKSDPMREITLKPNVKGEPSWVATKAGQGSGLGGDVFHLHQHATGQSFLETRDELRKLAFNKEFDASARYQGMSDAQREARIQEQRQAEALKAEVRRAEAFRQYQRTLAEPSQFLLARGISEQTLAETKWRTDRHGNAVFPHIREDGKFTGFERKKDGPALYSKSERGIYVANPNCPNPERIKVAEGGTDALSLYQMDTPEQRARTLYVSSGGNPAEDTARALRGLSERTGAKQIDLLYDQDKAGTGHTEMLQKAIAEKAPRLQVEDRRGDYAMREGEDPNDLLRRLQAERQQNAESTQHQEQPRSAAGNRTPSTQPTREAGQDKPSIQEDQAQQQTAQSKLEPAQQTESDQTQDHYQSRGISR*	common_virus_hmm	common_virus	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0033	cloud	direct	high	4472	1.0	GCA_000953455.1_03939
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3944950	3945828	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	31437	32315	GCA_000953455_1_1_3789	GCA_000953455_1_1_3789	-	4696984	.	pfam08751	TrwC relaxase. Relaxases are DNA strand transferases which function during the conjugative cell to cell DNA transfer. TrwC binds to the origin of transfer (oriT) and melts the double helix.	MSIFTLSKFSADSILGRAEYFERDSDSLASLYLGGASEHLALEGKPAKGHYAALMFGNSPVNGESLLSDHRRKCLLSPRSVIGFSTSIGLHKSLSVLYAGLRQDDQKFFLDALIAASRGLFAELEGISFFGSRTGRGGSGYAKGEAIALAYVHCTNRALEPHLHIHVEIPNFCRCADGQWRTLAAAALYDRQADVARLFDKHLVAELGVRLPWLQSRFCSDERGVSIPSISAEVLDAASTRRKEVVEALDHGAETKLEAAYTTRQQKGDISLTGLIEAWRDQFSHSIRALRG*	mmseqs_cdd	nonviral_gene	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0034	cloud	direct	high	878	0.999	GCA_000953455.1_03940
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3945830	3946171	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	32317	32658	GCA_000953455_1_1_3790	GCA_000953455_1_1_3790	-	4696984	.	.	hypothetical protein	MSYERKNHTQSMVTGRAQQAFERLARDLRVPKSGVLQAILEAVPTSDLVALVRGELALHTAKTVALEPEAALAVRSEIESALALLGPRIAEASRLGAQRAVVEHLKTLMTVEV*	.	hypothetical_protein	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0035	cloud	direct	high	341	0.997	GCA_000953455.1_03941
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3946472	3947050	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	32959	33537	GCA_000953455_1_1_3791	GCA_000953455_1_1_3791	+	4696984	.	.	hypothetical protein	MTQEKPGTQDPIAKIEEFISEMNRERDALTAKIEAEFERRRAEALAQTRGKKNVRGSATQILLPRLDVLRKATIAGTPITQQKEALEAAGVYVSYNSLRKFIQKYLALEYREFLANSRTTGMPLDQGEAPLSELEQAEIDAFLSGKKPVPAPAKEKSTEHLATQTSTRAAPAKSIRKLKEKADAIDYDEFRE*	.	hypothetical_protein	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0036	cloud	direct	high	578	0.998	GCA_000953455.1_03942
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3947078	3947797	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	33565	34284	GCA_000953455_1_1_3792	GCA_000953455_1_1_3792	+	4696984	.	7NPD_A	ATPase, Chromosome segregation, Bacterial cell	MRIAIVNLGGNQGKTTLAVNLFAPRMPEAKILAVETINAAGGDLGAEVEKLRGEQFSRIYAELAAADDLILDVGASNIEEFLEGLERFEDGHDEVDLFVIPATPAKKERTEAMKTAQMLHELGVSGEKIAFIFNRTSDVEQDFSDVLRFAEKTSVARADAEAFVPESELFTLLADKKLNIAQALADETDWKAQLKTASKSGDKKGFDKAADMVAIKKMARSMDRQLQHVFESLTAPVGA*	hhsuite_tools	nonviral_gene	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0037	cloud	direct	high	719	0.999	GCA_000953455.1_03943
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3947853	3948479	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	34340	34966	GCA_000953455_1_1_3793	GCA_000953455_1_1_3793	+	4696984	.	.	hypothetical protein	MLRELFEDHYKLADRFEAAAQQISIVERSLHGTEGHQGTTELLLNAAEQCRLGAAAVSQLNVVELAAAVAQLNEQTKALPHQLLRPEESQAFRESLERALLSDTTRILRVAYEAAMKSGCLEAVEHALREMQKRIDTTELEKVTKALNAARQQNSALNNKISLLNSQSVGKLQAAVKWSVTSFFTGIALGTALSMLYLAPQINKFINP*	.	hypothetical_protein	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0038	cloud	direct	high	626	0.998	GCA_000953455.1_03944
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3948534	3949004	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	35021	35491	GCA_000953455_1_1_3794	GCA_000953455_1_1_3794	+	4696984	.	.	hypothetical protein	MSNHDEAGCVCANDKWPHASIENAVVELAKIFIGQASTYQLDSLLSMYELKQPGQIAMYAGLIAATYRIALLEAENRSLRIVTGNLAVDNSIRFFPEVNAFMDAMNSDLRQAQATGRMPKLMHFEQRVRNAETRSKIADAGRALEIEVTKGHSERI*	.	hypothetical_protein	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0039	cloud	direct	high	470	0.998	GCA_000953455.1_03945
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3949006	3949326	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	35493	35813	GCA_000953455_1_1_3795	GCA_000953455_1_1_3795	+	4696984	.	.	hypothetical protein	MKKDIERFFRRAPPEYLKGLLSPINGPSFETRKKQLMIAKSLSDNPYYRLFRLTPPDEISEILRPALKAAWEDVNSIRKRAKALREKNSPSDPEPGDEAQELSRGP*	.	hypothetical_protein	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0040	cloud	direct	high	320	0.997	GCA_000953455.1_03946
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3949310	3949906	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	35797	36393	GCA_000953455_1_1_3796	GCA_000953455_1_1_3796	-	4696984	.	pfam19570	Family of unknown function (DUF6088). This family of proteins is functionally uncharacterized. This family of proteins is found primarily in bacteria. Proteins in this family are typically between 197 and 228 amino acids in length. This family appears to be distantly related to pfam13338 suggesting proteins in this family may be an antitoxin component of a toxin/antitoxin system.	MSHLAENIMSVAQALPEGGMLSPKEFLHLGSRAEINKTLSRLAQEGKLLRVSHGAYVRPHQGRFGVRPPSTESVLQGIEASCGETVVAHGAAEANALGLTTQVPIQEVFLTSGASRTLHFGSRCVALKHGSRWQLLLGKRPAGQVIRALAWLGPEAASAALKELHSRLPEAEWEAVCGARAALPSWMAKVVSEAMAHD*	mmseqs_cdd	nonviral_gene	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0041	cloud	direct	high	596	0.998	GCA_000953455.1_03947
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3949968	3950318	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	36455	36805	GCA_000953455_1_1_3797	GCA_000953455_1_1_3797	-	4696984	.	cd16170	DNA-binding domain of the bacterial xenogeneic silencer MvaT. MvaT is a xenogeneic silencer conserved in Pseudomonas which assists in distinguishing foreign from self DNA. It prefers binding to flexible DNA segments with multiple TpA steps, and forms nucleoprotein filaments through cooperative polymerization.	MSKLAEFKRLEAQLAAQLQQLDALKNDAELKKEIQFEEKLRALLAEYEMSLRDVINILDPSPRSTPAVVVQRRQRKIKVYKNPNTGEVVETKGGNHKVLKTWREQYGVETVDSWLQ*	mmseqs_cdd	nonviral_gene	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0042	cloud	direct	high	350	0.997	GCA_000953455.1_03948
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3950336	3951751	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	36823	38238	GCA_000953455_1_1_3798	GCA_000953455_1_1_3798	-	4696984	.	pfam19500	Family of unknown function (DUF6035). This family of proteins is functionally uncharacterized. This family of proteins is found in Proteobacteria and Bacteroidetes. Proteins in this family are typically between 425 and 520 amino acids in length. There is a conserved GVD sequence motif. This family contains a PD-(D/E)XK nuclease domain.	MTTVISEIAELTETQKLTEIIDLDTGLSIDLQSFVCRHDREVVKARNELRRRYLVDPESPWLACELCGAAVQLVCHTDRKYYFRHMPEQENRGCPVNTKNKLTPDQILAAKYNGAKESYAHQHLKEIVRDSIIADPNFSSPRLEKIWRSSNFLERASWRKPDVQVEMNGRKLAFEIQLSTTFLSVIVERREFYRAEGGSLIWVFQSFDPSQTRRAEEDIFCNNNMNVFVVSGETLLRSQKDKRFSLDCWYPLPSYKYGLLVHEWCCDQVFFDELTFDVELQRVYHFDYESRLSEMNSQRIADEVFRQRETLRERFESFWLRDDLQYDSEDDEVNSEWMALKNEMRSVGFVGALPNSHWSMPFYGVIALMLSVKYGKPVGYKFKTLLEVTNLAFNSYKKFLRPFGLAIYYYDMDDLLVGQDRKGTWRKRKVTIRQAMVAKDPAYAQTTFFDEAIAFILPKISDKLGVSCWRS*	mmseqs_cdd	nonviral_gene	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0043	cloud	direct	high	1415	0.999	GCA_000953455.1_03949
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3951856	3954054	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	38343	40541	GCA_000953455_1_1_3799	GCA_000953455_1_1_3799	-	4696984	.	.	hypothetical protein	MNSFSQLVLSWMFGRWIFDGDQTEIISDNISDVTPLTIFAAAFSQLGLLMFGVLASWAMFLGIFRLKNNGNFFGAKDGNEAFFYPLRVVVALILVAPVVPVSSAGGVPITLTTGHALIAGVSKMAAEFGDTMQHDAFELMHRHNLFSDPQFRVEVDTGVALDMLNSWKLAAAQLAGFAVFQDPSEEKIVAGLTGEQLALVALRNRWNEVYGNTHPAGSGDAQSQAAEAFLSVAGRSLQIPLIAPTDSLAREVTLGASGLIDSGAVDETIGRELETEGWFCQLGWMSSMTCSEEFAQVKANNSASIEAGIAAAQRQIWIQLVSHALNYAKSVQDGGVTQAEHKEYFEKSINWTAQTADWYSKNVEATIANTLAGDQAERAEPYFDEVKSWGWMLGGTFVLRAASDFSRAASYAEGATSKMMPKSSLSALTGGEVLSKVVEQETLAQIQPGNTGSTTKSLLARVFSLDILKETTGPSIQNIHTIAAWGRSLVGTGIGFFAGGKIAQYMPGLSSMTDGALPKSIGALMIIAGGMIGYVMPLLFAAYGLMGAIGWLVAVATTFFGVTLWSAGFAAPKGEEHTSQMSAKGWNALIFIGLYPALAVGGLAAAIVISAIGLAMVQALAMGMWGMFDPGTAEVGRPLESLGGILVGGLLLVGVIILVSWNVVVTSAQLIMTFPRTVLNMISFSEPGLNPYENSPQNLMGGLAMSARQVLTGAISRAITPSRNPSPPQGGG*	.	hypothetical_protein	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0044	cloud	direct	high	2198	1.0	GCA_000953455.1_03950
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3954047	3954583	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	40534	41070	GCA_000953455_1_1_3800	GCA_000953455_1_1_3800	-	4696984	.	.	hypothetical protein	MSKIKTVAAYLTGYAQTKNAVREVKTSVSLPVNFLRGLWEQVQEIRREAAEANALAKKDDKGLWDEMCREYEITTESVRRKYKSALFTNLLLVLGIGLIVGNLLSNLNTGSMVVFANVIFLNFLLMLLFQNAYRLNMAYTQSAPPVMQFLKNILKNPTLLIGRTLPDDYKVRLEAFNE*	.	hypothetical_protein	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0045	cloud	direct	high	536	0.998	GCA_000953455.1_03951
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3954587	3954760	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	41074	41247	GCA_000953455_1_1_3801	GCA_000953455_1_1_3801	-	4696984	.	.	hypothetical protein	MLLKEAQVKIPRAIGVGLIVYFGLVVPGREVVNRVVPIEHVKAVETEIPVPPVSRPR*	.	hypothetical_protein	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0046	cloud	direct	high	173	0.994	GCA_000953455.1_03952
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3954750	3954911	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	41237	41398	GCA_000953455_1_1_3802	GCA_000953455_1_1_3802	-	4696984	.	.	hypothetical protein	MSLPDIQRALAALREIQVKAVELPPSCEHDAHVIAALAVTVEQILSKEIKDAA*	.	hypothetical_protein	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0047	cloud	ambiguous	low	12	0.074	GCA_000953455.1_03952
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3954989	3955417	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	41476	41904	GCA_000953455_1_1_3803	GCA_000953455_1_1_3803	-	4696984	.	.	hypothetical protein	MAIIVKTKIHEGCTGAGVHVQYELKTNPRNLMAAIDEIDSLRERKTSSFGNIGHCGTWIEVDGVSLSVWDEKELSKAYVEEDLNYYRREGGVKPLNRTQRAEKMISSIASGELLADRKASAEWVEKELQTEMDAWDQQPEMC*	.	hypothetical_protein	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0048	cloud	direct	high	428	0.998	GCA_000953455.1_03953
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3955682	3957007	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	42169	43494	GCA_000953455_1_1_3804	GCA_000953455_1_1_3804	-	4696984	.	PDB:6AR3_D	Reverse-transcriptase	MTPDSAEVSAASVTWTNAEPDMLMERVLAPANLERAYQRVVSNKGAPGADGMTVADLAGYVKQYWPILKARLLAGEYHPQVVRSVEIPKPQGGMRQLGIPSVMDRLIQQALLQQLTPIFDPLFSDYSYGFRPGRSAHQAVEMARVHVAVGHRWCVELDLEKFFDRVNHDILMACVERHVEDKRVLRLIRRYLEAGVMSGGVVSHRQEGTPQGGPLSPLLSNILLDELDRELERRGHRFVRYADDANIYVRSPRAGERVLASVERFLNHRLKLRLNRDKSRVAGSWKCDYLGYGMSWHRQPRLRVATMSLRRVRDRLRELLRGVRGHKMANVIERINPVLRGWAGYFKLSQSKRPFEELDGWVRHKLRCVVWRQWKQPSTRARNLMRLGLGEERAYKSAFNGRGPWWNSGAPHMNQALPKKLWDRLGLVSILDPINRLNRMA*	common_virus_hmm	common_virus	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0049	persistent	direct	high	1325	0.999	GCA_000953455.1_03955
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3957580	3958002	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	44067	44489	GCA_000953455_1_1_3805	GCA_000953455_1_1_3805	-	4696984	.	.	hypothetical protein	MKIKIALVAIAFAVLVGCGESKENKIMPQAATTDAVYSEKASRYLEEVIGTPKKAKRIEMTFWHETDRKGVGYLSLVVDGVEMIRPIDNIGGYSAASSQGFKFIYEGGAWKAYVAEAEKNTHGEHPQEFFDKTTGILRKY*	.	hypothetical_protein	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0050	cloud	direct	high	422	0.998	GCA_000953455.1_03958
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3958016	3958516	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	44503	45003	GCA_000953455_1_1_3806	GCA_000953455_1_1_3806	-	4696984	.	cd16385	IcmL	MNRLKAALAAAVILLATAQVEAASEPHPVPLLKFHRDCVIKAFELNYGSFQRQLQDLHVACMTDRAYIDWRSSLERAGYIDQLKNGKNKLVLAANVGAGAVISEGMRELASKKRYTATIKSPVQVVLNGDTSRSRNGYIETDVIRVRQSDRIVGYAIHAIRLNIKK*	hhsuite_tools	hypothetical_protein	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0051	cloud	direct	high	500	0.998	GCA_000953455.1_03959
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3958518	3958946	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	45005	45433	GCA_000953455_1_1_3807	GCA_000953455_1_1_3807	-	4696984	.	.	hypothetical protein	MNFFDDDVLDQLDLNELEIMRERAHHFLSRVQFQVELKNSTARPLSRFTFQESGFVFYAEKVEDGVLINPALPPNFGNRDISTRPSEELERWSCRPYIETREVPSGTRYIVHCLDGGAWDRPTDWGSFASLNDALVCISERC*	.	hypothetical_protein	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0052	cloud	direct	high	428	0.998	GCA_000953455.1_03960
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3959369	3959983	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	45856	46470	GCA_000953455_1_1_3808	GCA_000953455_1_1_3808	+	4696984	.	pfam05857	TraX protein. This family consists of several bacterial TraX proteins. TraX is responsible for the amino-terminal acetylation of F-pilin subunits.	MRTIGRLAFPLFCLAIAANAYRQPIGYSGGLKYLGGILLFALISQQPYSRFFESNYLNILFTLGLGLVIAQAVHHRTPSLITAGVVALAVAAAYRPILSYGLAGVLLPTALLAALQARVIETRIVTWSTAALIAVLANTGAGIMLLPDLPARALASISAAALAPLLGLALLQFRLRSIRPVGTWMYPIYPIHMLLLNSLSITWA*	mmseqs_cdd	nonviral_gene	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0053	cloud	ambiguous	low	185	0.301	GCA_000953455.1_03961
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3960592	3960792	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	47079	47279	GCA_000953455_1_1_3809	GCA_000953455_1_1_3809	+	4696984	.	COG3311	Predicted DNA-binding transcriptional regulator AlpA [Transcription, Mobilome: prophages, transposons]. 	MKNQKRQPLSTVAEICEYLHIGKTTFYRLAATPGFPEAIRFNQRVVRYELTKVIDFIKSDTLKESA*	mmseqs_cdd	nonviral_gene	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0054	.	unmatched_CDS	none	0	0	.
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3960987	3962291	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	47474	48778	GCA_000953455_1_1_3810	GCA_000953455_1_1_3810	-	4696984	.	PFAM:PF13701.5	Transposase-DDE-domain-protein	MLPEKLHFSPLSRRLVEASFTGGHITSDAGLLLLREVDQQHGLTRRLAKIVPDRRDPGRVQHGLQTLLAQRIYALAAGYEDLNDHDGLRHDYALQTAVNRLQPLAGKSTLGRLEQQADRETVVQAHRLLWEHFIAQHDQAPAEIVLDFDATDVPVHGDQEGRFFHGYYDHYCFLPLYVFCGRHLLVSYLRPSNIDGARHSWAILALLVKFIRRFWPETRIVFRGDGGFCRHRMLDWCDRKQVDYVVGLARNTRLQRMAAPAMQAVAEAYQETGQKMSGVYRFLYQAGSWRRRRLVVSRLEHGEQGANPRFIVVSRFAEDAAQQYYEDYCGRGDMENRIKDQQLDLFADRTSSPRWWTNQWRLMLSAFAYVLFERLRDHLQGTALARMSIHNLRLKLLKIGAVIIRNSRRIRVLISEAYPHQELFAGLVARLKPT*	common_virus_hmm	common_virus	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0055	cloud	direct	high	1304	0.999	GCA_000953455.1_03962
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3962714	3963328	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	49201	49815	GCA_000953455_1_1_3811	GCA_000953455_1_1_3811	+	4696984	.	PFAM:PF10134.8	Replication-initiation-factor	MFDNDVYLEIIRLAQGRAPGEKILFNRHSFLRALGISGGKNNYDALHQSLQKLKGNTIKITNFKTGYDAFSLIDQLSWDEEVGYWRFSIGDIVIEMLSTELSYIDLDIRKSLTTPLSKYLQNYMSAGLPGEREVKVDNLMRLSGTTSQLKDFLGKGRGLTKALDELKAVGFLASYAIHKNKNGDHIVRWNRTAHQNSRRHASGI*	common_virus_hmm	common_virus	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0056	cloud	ambiguous	low	3	0.005	GCA_000953455.1_03963
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3963325	3964650	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	49812	51137	GCA_000953455_1_1_3812	GCA_000953455_1_1_3812	-	4696984	.	PDB:1Z19_B	Integrase	MAGTVNEQKLRGMKPGGGKLTESLPGRGMGSLIFKRQGETPPMAFYRYRLDGKDSLIKIGVCKLSPRGIGLTLPEIRERARELAKVAVEHGDVRAHLEDLENQAELARIEREREINALRVQGSFEELFREYIEDRRGKVRDDQVSEYERILKVDLLEAHAQVLALRASEVRPQHIRQILETIWNRGATRQADKVRSFLRAAFQYGMTAEHSLGRSSSKNYSIDSNPVDAVLVPSTSKPGTRALSDTELKHFWATITETDGIGPVISRLFQFVIALGGQRIEQVAREPWSSYDRESRTLRLVDRKGRGEVERIHLVPLTDRALELLEQVEAITGGFEWPWTSYGKKPFATTSFAHAIRDWLGSKHGKIDDEQIPHFTPRDLRRTCAQLMQRNGVDDRLSDLLQSHGQTGVVGQHYRNNPEAYLPEKLKAMAGFEAALSKVLD*	common_virus_hmm	common_virus	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0057	cloud	direct	high	1325	0.999	GCA_000953455.1_03963
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3965031	3967208	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	51518	53695	GCA_000953455_1_1_3813	GCA_000953455_1_1_3813	-	4696984	.	PFAM:PF13550.5	Putative-phage-tail-protein	MGAKPKSQTVGRRYYYDIHMGLGLPLDEIVEIQASDKRAWRGSITSNGQIYINAPNLFGGDAGEGGLQGTIDVLFGEENQPVLPRLAAMLGGLVPAFRGITTAFYSGLVTSMNPRPFPWKILRRGGNRLWGADGAWYPERQFIWLADNQIKAMNGAHILYCMYTSPRLRRRLPRVRMDDAAWRAAADRLYSEQLGLCLEWKRSAPFKEFREAVLAHIGAEVFVDRRTALLSIRLIRDDYNVEDLDLFDEDSGLLEIIEDEASSNSSTSVPSELVVSYVDAIDGKKKHVRVVNSAVAARDGGRSSESIEYFGAPTGEIAGRLALRDLRVKTAGLKRYKVVLDRRGRDITPGKPFRVRSLRRGIAEIVVRAGRCEDGPLTSGRITVTALQDVFGLPVASYVAVPPAGWLPPDRTPYAVAVRRLMEVPYRELAGIIDPANLELLDPTAAYMAALAVAPTSLSFSYTLTNRVGSSGPFAIRESGDWCPSALLVSAMPQEPGPTAVSLTSATRLGDVRVGMAALVGEEIVRVDAVNYETAVVTLARGCADTVPTLHAAGARVWFYDEYEGIDETAYTQGVTLQARLLTNTSEGQLDPALAGTDSIALQGRQGRPYPPGQFRIGGVNYPASVEGGVVLSWAHRDRLGQADQLIDTTMGNIGPEAGTTYSCRLLRADNSAQLAIHAGLSDTTATLVTTYEGQVIAELWSVRGGLQSIQRQRWQFEHTNPPPP*	hallmark_hmm	common_virus	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0058	cloud	direct	high	2177	1.0	GCA_000953455.1_03964
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3967198	3967413	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	53685	53900	GCA_000953455_1_1_3814	GCA_000953455_1_1_3814	-	4696984	.	.	hypothetical protein	MIVTIQHLHTVPTWTTRQGYCHRQARAWFVARGLDWGHFLREGIDEQILLDSGDALAIRLVEHAREVNDGC*	.	hypothetical_protein	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0059	cloud	direct	high	215	0.995	GCA_000953455.1_03965
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3967410	3967640	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	53897	54127	GCA_000953455_1_1_3815	GCA_000953455_1_1_3815	-	4696984	.	.	hypothetical protein	MWLQVAILVGTYLLSSARAAKAKPPRPAAFEEIDFPVCEEGEEQTAVFGQVWSESWMVLTVGNHRTSAIKVKGSKK*	.	hypothetical_protein	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0060	cloud	direct	high	230	0.996	GCA_000953455.1_03966
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3967649	3968470	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	54136	54957	GCA_000953455_1_1_3816	GCA_000953455_1_1_3816	-	4696984	.	PFAM:PF05100.11	minor-tail-protein-	MSSASRELSLADGQPIRLYQFSRGVLRWSYTSADRNITYNNQVFRSVRGGIGDPGIIQSGDPQADRLVITAPADLEVALLYKGAPPSDEIGLTVFDLHYGEADAWVSWAGSIATVNWPALDRCRITCLSIEASMDAPGLTDVYSRTCTAVLGDTECKVDLNQYRVTTNLQSMTGASVFSGTFAEYPDGWFSGGHIEWPIGSGEYDRRHIERHIGSELLLLGGTAGVPPGGSVRTYPGCDGLDTTCAGKFSNIDNMRAQPHLQGSSPFDGNQVW*	hallmark_hmm	common_virus	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0061	cloud	direct	high	821	0.999	GCA_000953455.1_03967
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3968457	3970172	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	54944	56659	GCA_000953455_1_1_3817	GCA_000953455_1_1_3817	-	4696984	.	PFAM:PF02011.14	tail-assembly-protein	MAVLSGQSVRPILGGIDNPNLTTDHWAFAWVNQFAPSPYVSDTQRAGQAPLTTHWPVAANGRSLSGQRRRAHVDDWYHRIHISPQQLDLGNVVSAQTTPIYLWNAFLEPRTLTTIQGLEEGIEVGGQPSPPMLFPALAEKVWQVSVTPDGQPVLDTTLGWAFDNGALASLRITANRIVAWSFAPDWGSSIRELLEWLTDILTSESLVEQRRALRLSPRRQFEAALYVEGRERQLLDLALFGWGTRVWALPIWPDIQLLAAPVPAGSQRIDCDTQHLDFAAGGIAMLRGEDAFTFEVVEIESVDASGLDLNREIQQSWPVGSRLYPARPAQLAEQPTLRRLTDTVQSAEVRFLVLEPSVWPDVMPAGLYRGRPVFDTRPDESEDLTGSYARLLASLDSGLSLPLVTDVAGRAMPVQEHRWLDMGRATRAAYRSLLYALRGRQRAIWLPTHADDMTAVATITSVATTIDIEAIGYTRFGQARPGRWDIRIELWDDTVFHRRITGATELSADIERLALDSALGQQVEPSDIRRISWLVLCRLDVDQVEIEHITDSEGVAASSLIFRGVRDDEFS*	phrogs_hmm	hypothetical_protein	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0062	cloud	direct	high	1715	0.999	GCA_000953455.1_03968
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3970175	3971056	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	56662	57543	GCA_000953455_1_1_3818	GCA_000953455_1_1_3818	-	4696984	.	.	hypothetical protein	MAFYSGSANDMAAVRTALVDACVTEGWSWNSGTEVLSKGAMFLRLQIVSGYLTLLGRTSAGAGDAPSIVRMGQMGTAITWPVEYTFFVFDAEVYCVIKFGVDFYLWCAFGQSTVAGLPGTGMWVAASVHAIANHNPAISPIDGPKSSFSYGCAAIFWRTSAGAVAGGHDYWVHSDLDDQGWWSGQSVGAAPAGIQPAVPLIGVLPNSWNSEAVLLPIRAYKFRPSNRLSLTADLEHARYTRVDNYSPGEVIQIGDERWMVLPFYRKDSANRNGSSQPAAHTGTFGWAIRYEGP*	.	hypothetical_protein	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0063	cloud	direct	high	881	0.999	GCA_000953455.1_03969
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3971056	3971913	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	57543	58400	GCA_000953455_1_1_3819	GCA_000953455_1_1_3819	-	4696984	.	.	hypothetical protein	MPHDIDFVDNSGGTLAHYKMLERIRDFAADNGWTVLRYDTAPANRELILKGVGFSEEEEIFVGFRTYQDAGADYYNLLAGVFTGYVPGNTFDTQPGARLSGVPAHNNRIDYWLTLNPQRIALAMKVGTPVYESAYVGKMLPYGRPSQYPYPVVCGGMLTGAAATRFSDTGHSGYFKGNRQGMGLRSNDNWLLPRCYPWGNGYIAGNATSANDTNLRDTGGIYHLLPVELHDNSANLWGALDGVFYISGFDNAVENTLTVEGVDYVVIQDVWRTGHTDYYALRMDD*	.	hypothetical_protein	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0064	cloud	direct	high	857	0.999	GCA_000953455.1_03970
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3971917	3975543	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	58404	62030	GCA_000953455_1_1_3820	GCA_000953455_1_1_3820	-	4696984	.	UniProtKB:I6NKY8_9CAUD	Tail-tape-measure-	MANNGNLQLALRVQADLKQAVDALKQLDAGLDGVSSSAQSSTSAASTTGAALDRAGDAARSAAREGERYAVAAGRVASQSEVAARSLDQVTQKAGQGDLALSRMAKSIGAVAGSFIGLQALSKGIAMVDDYGQMADRIQMATESAAEYDQVQSRLLETAKATYRPLAEAQELYISTADALRSLNYTTSDSLDITDSFSYLLVTNAASADKANSAISAYAKAIQTGKVSSDQWQSLLGAMPTLVNAIAEATGKSTEEIRKLGIEGKLALDDLNESLRKSLEANKKAADGMGTTVADAMMRLSTGLTAYLGEANRSTELTATMAKAIDLLGENIETVANLFGVLAAGAMARYGAQLAVVTKGKLADVLASRAQIAEELRLAQAQVASTATAVNAARANVGLSGSHGQVATAIAAHEAATRRLAAAQAAAGTASRALMGFLGGPAGIAMLAASAAASFFLFRDSAEEAKVSLDDLSLSVEEYGRKWAEASKEQRRAMLDTTRQQLQQVQADINDSISKIDAALNNLASAGQVPINLVIQAMGDLRTAAENGGAGIDDVVQSIADLLPVGHQARSELTQLAGQLSTQTQSVTTLSERMGEFTGRLDDNTDALRRNSDELGRGSKEADEYLEKLRGRTAELLDPSAVGRAKRDLVSLKDATLDQVSAILAEAAAQDQLLEARNKTKSSRSTAETEAQRQAKASESYVRGLERQAALLGLNAAEVRAYEVAEKGLAGALLARAQAANELISAEERKRQSDANARTNADLEAEFLRSVGRDVDAGLLEIRTKFDAMRVEFERAGNEAGLAWLDKLIPVAEAKVRVDDVQRQMEKILEEQRRQESSVNVQQDAGLLTELQARERILQIHRQTYDQLQQIRPVLEEMARQPGAVGEAAANALAALDEQAQRLQVTTTLLAETLRDGLTTGFTDALTGLAKGTMDLRDAITALADGVLDAMVRMAAENLAQSATNGLMGMFTGITEAAPQAIAAVQQTASAQQAAITAVQTTQMAADTAMATSSATAAATTATAQAGAAATTTAAWTPAAITASIGSFGAAAAIGLAAVMAALAFKAFAGGGHVRGPGTTTSDSIPALLSDQEFVTRAAVVQQPGALPFLSDFNERGMVALDDWATRVRHATGGLAGVPAPAMPSPGLGASRLAEPASSMIQNSQTFNLIDSPERIASVLQTRAGEDALTVVLSRDPAKFRSILHLDR*	hallmark_hmm	common_virus	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0065	cloud	direct	high	3626	1.0	GCA_000953455.1_03971
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3975675	3976169	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	62162	62656	GCA_000953455_1_1_3821	GCA_000953455_1_1_3821	-	4696984	.	PFAM:PF10109.8	tail-assembly-chaperone	MTKRRVKPQQPDDSLEVLFPDRPLTVGGRDLVVRELGFEEQMHNNHLLKPIADAFCQIPPQVLASPDSINQVLDLLAAHWDNVRELVAISCGQPLKWVKALPPADGEALVLTWWTANQGFFVRRLWRPALLAQARKAPAGAESSPASSPQATTGTSSAATPSGS*	phrogs_hmm	nonviral_gene	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0066	cloud	direct	high	494	0.998	GCA_000953455.1_03972
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3976173	3976949	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	62660	63436	GCA_000953455_1_1_3822	GCA_000953455_1_1_3822	-	4696984	.	Uniprot:A0A0B4ZXN7_9CAUD	major-tail-protein	MAQQETYYYGQGKLKLAIIAANGTLGPWRWVGDVSALSGAMQEETVSHDESYSGKKVKVREFGIRPQLTMSATLHSLDTENLAMYSQGTASSTAAGTASGEALPTGLQAGDEVVLANPGVSDLVITDSSGTPATLDEEHYLLDPAFGNLQIVSLPTSPAPTQPFIAAYEYAARKQVTLLSAASRPNVALRYEGINLAEGGAPVIMELYKLSPGLLQELSMITDGNTVAGMPVSFSALLDTSKPANGPMGQFGRIIQVG*	hallmark_hmm	common_virus	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0067	cloud	direct	high	776	0.999	GCA_000953455.1_03973
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3976975	3977178	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	63462	63665	GCA_000953455_1_1_3823	GCA_000953455_1_1_3823	-	4696984	.	.	hypothetical protein	METVKVTITAKNPNHTHAGKPCKQGDEIDVSRAAAQFLLRKKLIDKIPGKASKASDTPTPAEAGSDK*	.	hypothetical_protein	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0068	cloud	direct	high	203	0.995	GCA_000953455.1_03974
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3977166	3977639	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	63653	64126	GCA_000953455_1_1_3824	GCA_000953455_1_1_3824	-	4696984	.	PDB:2GJV_C	tail-completion-protein	MSDSDDYLFLEPLLVERIRAQVPGLADVLAIPDLASLDEDGQVSPSVYVVYLGDDTGSGAPHQGGARKIQTVTQNWAAVLHVYYADATGRGEGARREAGPLLGKLLTELTGWMPDGCTTPLARAPRQAPVAYSNGHFYYPLVFEASFVYPRLKTWKP*	hallmark_hmm	common_virus	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0069	cloud	direct	high	473	0.998	GCA_000953455.1_03975
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3977636	3978052	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	64123	64539	GCA_000953455_1_1_3825	GCA_000953455_1_1_3825	-	4696984	.	CDD:cd08053	head-to-tail-adaptor	MSYCTQADLVETYGEQEIRQLSDRVNKPAQEIDVAVVGRAITDADAEVDLHLQARYQLPLASVPVVLKRIACSLAYANLHTRLSEDHPAHLAAERSRKLLGGIASGKLALGFDAEGAPAPLANTVQISESRNDWGAKW*	hallmark_hmm	common_virus	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0070	cloud	direct	high	416	0.998	GCA_000953455.1_03976
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3978059	3978310	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	64546	64797	GCA_000953455_1_1_3826	GCA_000953455_1_1_3826	-	4696984	.	PF17891.1	Mu-like prophage FluMu N-terminal domain	MSTAATSKKTIKQNETKAQDVAGGEIEGVYVRSISERRCRAGFCFDRDGQGFAKGVLTDAQLAVLEADPLLKVEHCTFPAESE*	hhsuite_tools	hypothetical_protein	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0071	cloud	direct	high	251	0.996	GCA_000953455.1_03977
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3978371	3979285	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	64858	65772	GCA_000953455_1_1_3827	GCA_000953455_1_1_3827	-	4696984	.	PFAM:PF10124.8	major-capsid-subunit-gpT	MAIITPALISALKTSFQKHFQDALAIAPSAYLQIATVIQSTTASNTYGWLGQFPKLREWIGDRVVKDMAAQGYQISNKLFESTVGVKRTDIEDDNLGIYTPLMQEMGRAAGVHPDELVFALLKLGHSSLCYDGQFFFDTDHPVFPNVDGTGTPATISNSFAPAENPGAAWYLLDTSRSLKPLIFQERIKPAFQSMTTEDDEKVFTADEYRYGVRSRCNVGFGFWQLAARSTEPLNKANFEKVYDAMRGLQADGGRPLDVRPNLLVVPTTLRGAAKEVVGVERLANGATNPNYDLVQVLDTAWLN*	hallmark_hmm	common_virus	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0072	cloud	direct	high	914	0.999	GCA_000953455.1_03978
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3979291	3980391	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	65778	66878	GCA_000953455_1_1_3828	GCA_000953455_1_1_3828	-	4696984	.	pfam10123	Mu-like prophage I protein. Members of this family of proteins comprise various viral Mu-like prophage I proteins.	MKKNRPQVAIAACSFQLPKLEDGSVWIQFTPAGEFRPMDGRPMDVPAWRIDAASAAVVIARFQARRTPPVLDYEHQTLKKEQNGQPAPAAGRLLELEWREGSGLWARVELTARAAAMIEAGEYLYFSPVFAYGSDGTVLAVLMGALTNDPAIDNMEPLARRAAATFGLFDPEEEAPVELLKAIIAALALKAEATEAEAIAALTALKPALDAQAKTLAELRSALGLTTDATGEQIAAATAQLKTAASSAGNPDPTKFVPLAAMTELQGQMAALTARLNGGELDGLVGTALKDGRLLPSLEGWARELGGKDIGQLKAYLDNAAPIAALTRLQGDRVPQGDTHNLTVAELEAAKLTGISAADYAKAKGA*	mmseqs_cdd	common_virus	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0073	cloud	direct	high	1100	0.999	GCA_000953455.1_03979
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3980614	3981222	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	67101	67709	GCA_000953455_1_1_3829	GCA_000953455_1_1_3829	-	4696984	.	PFAM:PF05069.12	virion-morphogenesis-protein	MANRIEVQVIDAPVRQRVDQVLSVLTDSGVLMRGIAAELTAQTELAFQDEGPGWPQLKPATVKARARTGRGAHPILQVSNALARSITSQAGADFAQVGSNMPYAAIHQFGGTIERAPYSGKLRLRTDRKGQLLRRGKNGKLVTFAKEKGPRAHKNYVERRYEVKAHKIEIPARPYLPVTPSGLLTPRASDAIMELLTGLLMR*	hallmark_hmm	common_virus	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0074	cloud	direct	high	608	0.998	GCA_000953455.1_03980
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3981342	3982673	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	67829	69160	GCA_000953455_1_1_3830	GCA_000953455_1_1_3830	-	4696984	.	PFAM:PF04233.13	minor-capsid-component	MPTPTEADLRAIIQLRPDAAIEYLERKGFAITWNWHDVSAASHARAFTVAKAARLDVLQDIRNALGDNLEKGQTLRDFQRNLRPTLEAKGWWGRQIVVSPDGGAESAQLGSPRRLATIYQTNMQSAYMAGRYAAAYEARETHPYWMYIAVMDGVTRPSHAALHGKVFRWDDPIWQHITPPNGYNCRCRIVALSEAEVQRRGLKVESSAGKLGTETLEAGIDQRTGEIRSETVTTLDTTDRAGKRVRFRPDPGFDGSPVQSHLMDDVLLRKAQRTLGEPAALAEVQQVLLDPVRQKGWEAYIDNAIALGRPQGQSMAFGVLDAADLVFAQGKGAQVQSGIVFMSDARLAGAKVRRHQAAGDALSAAELKALPEQIARPQQVLWDTKNKTLLYILAGGTERAKLAVRFNRESYGKVKVDDAATVFKVAMQDIASGLNGGLYEVVR*	hallmark_hmm	common_virus	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0075	cloud	direct	high	1331	0.999	GCA_000953455.1_03981
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3982675	3984258	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	69162	70745	GCA_000953455_1_1_3831	GCA_000953455_1_1_3831	-	4696984	.	PDB:5NGD_C	Portal-protein	MTRIVDVHGNPIKTAELRHAQTSRLGALHREFAQHPARGLTPARLARILQDAEQGNLQAQAELFMDMEERDGHLYAEVAKRKRAVLGLDWTVEPPRNPTAAEQADADYLHELLQDLDGWDDMLLDALDGIGHGFAAVELEWLLYGREWMPKAMHHRPQSWFQLNPNDQAELRLRDNSAEGEALQPFGWIVHRPRARSGYVARSGLFRVLAWPYLFKHYATADLAEMLEICGIPIRLGKYPGGTPDDEKATLLRAVTGLGHAAAGIIPETMSIEFQQAAQGTSEPFLAMMRQCDDSISKAVLGGTLTSNTSESGGGAFALGKVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGNPDTRRAPRLVFDLREVADMAAMATALPPLVNIGVQVPVNWAQERLGIPAPAEGEAVLRPAQATPAMLTGRHGGRVASLAQVLGPRYADQQALDKAMAALPAELLQQQADAMLSPLLDAINRGGSEAELLGALAEAFPDMDESELTEALHRLLFAADTWGRLHGNLDRIG*	hallmark_hmm	common_virus	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0076	cloud	direct	high	1583	0.999	GCA_000953455.1_03982
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3984255	3984443	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	70742	70930	GCA_000953455_1_1_3832	GCA_000953455_1_1_3832	-	4696984	.	.	hypothetical protein	MRCELLITGCRDHQMWYSHLVGQRVPLLAIEPDCYLSREPAGFTNMVYKQDAEVVPAQEYDK*	.	hypothetical_protein	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0077	cloud	direct	high	188	0.995	GCA_000953455.1_03983
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3984440	3986089	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	70927	72576	GCA_000953455_1_1_3833	GCA_000953455_1_1_3833	-	4696984	.	PDB:4BIL_D	Large-Terminase	MKTSTKSFLADIAQLAADFRRQIEAEVDGFDPNPAASRERRERAWNDYEYFARTYFPHYVKKGNALLHDYLYQRLPALVDSPDGQHEAIAAPRGNAKSTLVSQIGVIWCVVTGRKRYPLIIMDAFEQAATMLEAIKAELEFNPRLLMDFPEAAGKGRVWQVGTVVTANDAKIQVFGSGKRMRGLRHGPHRPDLVIGDDLENDENVRSPEQRDKLQAWLTKTVLSLGAADDTMDVLIIGTILHYDSVLSRLLNNPLWKRRKFKAIIEWPHRMDLWEKWEEILLNDGEDAARAYYDERAQTMEEGAVICWPDGQPLYKLMVKRARDGRAAFDSEQQNDPVQGDNAPFAACITFWVNRLSQWLFYGACDPSLGKHGSSRDPSAILVGGFNRETGILDVVEASIRKRLPDKIIEDVIAFHKAYRCLVWGVEAVQFQEFLRTELVKRSALAGFPVPARAITPHSDKLLRIESLQPHMANGLIRIHASHSTLEQQLRHFPAADHDDGPDALHMLWMLATTGAARMEFTPAPSRHQTGSGGYGDDRSSGGRFGGAW*	hallmark_hmm	common_virus	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0078	cloud	direct	high	1649	0.999	GCA_000953455.1_03984
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3986122	3986628	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	72609	73115	GCA_000953455_1_1_3834	GCA_000953455_1_1_3834	+	4696984	.	.	hypothetical protein	MMDAISGALTAVSSLMTLSKDISNAKTDHEIAVKTGELNERLGGALQQLITAQTGYLALLNEKGELEAELLKIKDWAHEKQRYQLHKTEAGGLLYRIKPEMQGAEPEHEICANCYENGIKSLLQSAPDANWHLMLACHRCNSLVKVKRYPAPTPTVRRVTRSSRFDGF*	.	hypothetical_protein	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0079	cloud	direct	high	506	0.998	GCA_000953455.1_03985
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3986630	3987130	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	73117	73617	GCA_000953455_1_1_3835	GCA_000953455_1_1_3835	-	4696984	.	pfam08822	Protein of unknown function (DUF1804). This family of bacterial protein is uncharacterized.	MAHPKETRDGVRRAYVFDRQSLEVAAAMHGVSYGTARRWKQQAQAAGDDWDKSQSAQLLAGGGIEDVARQVLSGLVTQFQATMEAVQADQDIKPAAKVQMLASLADAYNKTVSASKRVLPETSALATAMEVLQKLASFIRERFPQHAPAFAEVLEPFGELVARELG*	mmseqs_cdd	nonviral_gene	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0080	cloud	direct	high	500	0.998	GCA_000953455.1_03986
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3987140	3987331	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	73627	73818	GCA_000953455_1_1_3836	GCA_000953455_1_1_3836	-	4696984	.	.	hypothetical protein	MAKDEKEETSLQLLQRIDKRLERFEDRFPQVERKGVMYGAAAGALSGGLVACGLLVARIKLGI*	.	hypothetical_protein	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0081	cloud	direct	high	191	0.995	GCA_000953455.1_03987
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3987438	3987842	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	73925	74329	GCA_000953455_1_1_3837	GCA_000953455_1_1_3837	-	4696984	.	PFAM:PF10828.7	Rz-like-spanin	MSLRLILSTLLAAALALLGAWGAGHVAGQAAGAAACAEGQAEGYRDLLDESAKQLHQAQATSTELFKRLARQHTHDEKTTQELRDALAETAADRTACRFAAGVMQQLEDARQRAARATTGGLDATLPPAGGDGG*	phrogs_hmm	hypothetical_protein	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0082	cloud	direct	high	404	0.998	GCA_000953455.1_03988
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3987839	3988096	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	74326	74583	GCA_000953455_1_1_3838	GCA_000953455_1_1_3838	-	4696984	.	.	hypothetical protein	MNRENGLGLLSEDEVELIRSRRLENAKKAEAAALRLRILRAAVSYEAWFQEHERGSTYSTFTNEFGGDSSLWDSVEFLRDVVGSQ*	.	hypothetical_protein	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0083	cloud	direct	high	257	0.996	GCA_000953455.1_03989
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3988093	3988521	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	74580	75008	GCA_000953455_1_1_3839	GCA_000953455_1_1_3839	-	4696984	.	CDD:PHA02564	virion-protein	MQTQPRGIRNNNPGNIDYNPRNNWQGQLPRDVKIEPRFACFDTAFNGIRALAKLLVNYRKIHGLRTVEGLISRWAPSNENDTKAYAHAVAAHLGVPIQAGIHLDQDTLEKLVTAIIRHENGQQPYSAELIASAVQAVQAVLA*	hallmark_hmm	common_virus	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0084	cloud	direct	high	428	0.998	GCA_000953455.1_03990
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3988523	3988999	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	75010	75486	GCA_000953455_1_1_3840	GCA_000953455_1_1_3840	-	4696984	.	.	hypothetical protein	MRTYPHCAQPSRTRKERPMPEPGTTTVAASGALLKYFGLHIGAGALAATLGFLVLWPRSMREGFARLFCTIVASSVFGPVLVVQMHAARPELFASAEAVAALYGLEPALGLLFVATPLLVIAGLPAWWLIGAALRFFERDGDSWLGVLAQRLKRKLES*	.	hypothetical_protein	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0085	cloud	direct	high	476	0.998	GCA_000953455.1_03991
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3988938	3989285	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	75425	75772	GCA_000953455_1_1_3841	GCA_000953455_1_1_3841	-	4696984	.	.	hypothetical protein	MDTQTPHPPRSPRDYAAAILAEPSRERRNALLEACPAEWRDLVREHVQAAFAKVKAYRDHKAGRAQLARQKPPAAPRRDALHKPSNYTRSAPEVGNAHLSALRAAVAHPQGTPHA*	.	hypothetical_protein	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0086	cloud	direct	high	347	0.997	GCA_000953455.1_03992
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3989356	3989640	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	75843	76127	GCA_000953455_1_1_3842	GCA_000953455_1_1_3842	-	4696984	.	.	hypothetical protein	MNRTVGAAFLVLGTMAMPAYSASCDDIETVAKTFAEGRYKGHPVSAYMKHVESTPALKQLLIDAYSLPDYHSDQMQQKAVSEFVNRTYIQCVQE*	.	hypothetical_protein	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0087	cloud	direct	high	284	0.996	GCA_000953455.1_03993
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3989691	3989891	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	76178	76378	GCA_000953455_1_1_3843	GCA_000953455_1_1_3843	-	4696984	.	.	hypothetical protein	MLTPEAQRHLERLDTIGRCWTAVTDLMVPEKDLHVVDRDTLSCLFNFLAEEYDKARQGFTEALKDR*	.	hypothetical_protein	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0088	cloud	direct	high	200	0.995	GCA_000953455.1_03994
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3990022	3990453	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	76509	76940	GCA_000953455_1_1_3844	GCA_000953455_1_1_3844	-	4696984	.	COG5566	Transcriptional regulator, Middle operon regulator (Mor) family [Transcription]. 	MDLSQLQELLPENVRDMAARIGLPATLRVVERMGGTTWRVAEGRTPEGEAKRAALADIVGSDIEEMLHREYAGDEFYLARCHAAVLRWRNLEIHQRFEQGVREGLTARTLVAELAREYRLSDRRVWIILKEHLPPVEQGTLFH*	mmseqs_cdd	nonviral_gene	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0089	cloud	direct	high	431	0.998	GCA_000953455.1_03995
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3990453	3990848	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	76940	77335	GCA_000953455_1_1_3845	GCA_000953455_1_1_3845	-	4696984	.	COG4382	Mu-like prophage protein gp16  [Mobilome: prophages, transposons]. 	MSLAKIHIAKAQLGLDDATYRALLARVAGVRSAKDLDRRQAAAVLAEFERLGFKPQPAKKQGRARPNPAGSRKTVMRKVEALLTEARRPWSYADSMALHMFKVARVEWLDDSQLQRLMQALIIDAGRHGRL*	mmseqs_cdd	nonviral_gene	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0090	cloud	direct	high	395	0.997	GCA_000953455.1_03996
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3990845	3991042	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	77332	77529	GCA_000953455_1_1_3846	GCA_000953455_1_1_3846	-	4696984	.	PFAM:PF05315.10	endonuclease-VII	MSTLQQATLPKQRVTWYAIERYCPRCEEYWPADEEFFHPRPGGKLDSWCRACSNEYRRLKRMTTQ*	phrogs_hmm	hypothetical_protein	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0091	cloud	direct	high	197	0.995	GCA_000953455.1_03997
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3991039	3991320	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	77526	77807	GCA_000953455_1_1_3847	GCA_000953455_1_1_3847	-	4696984	.	PFAM:PF10723.8	transcriptional-regulator	MTEESQIERKRRQARERKTAQRKRDRERRTLVGAHEFRMDMYQGTTEALERICAAGQFEEGVEAITLLLHNVAELAERDQSRFKELIKMRCHA*	phrogs_hmm	hypothetical_protein	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0092	cloud	direct	high	281	0.996	GCA_000953455.1_03998
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3991393	3992064	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	77880	78551	GCA_000953455_1_1_3848	GCA_000953455_1_1_3848	-	4696984	.	PF10979.8	Protein of unknown function (DUF2786)	MDHKKALDKIKKLLRLANSSNPHEAAAAMRQARALMEKHQLDQTDVDIADIEEHGTRSGSKMKPALWESRLAQTVAKAYSCRLFFKAGVGDWRFVGEMAEVASYTLAVLLRQVRQARRDYIAQNLKRCKSASKTKRADQFCSGWVYAVYTKVAEFAGTEPSGATDAYMLKHHPDLVDGKAIDRTAKTKSLSLRAINDTAAGIQAADSVQLNHGVGGQEQLALT*	hhsuite_tools	hypothetical_protein	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0093	cloud	direct	high	671	0.999	GCA_000953455.1_04000
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3992144	3992362	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	78631	78849	GCA_000953455_1_1_3849	GCA_000953455_1_1_3849	-	4696984	.	.	hypothetical protein	MTEHSFTVTVAEGESGINIQVGGIQPFEGVDSNALEIAKALRLTMLQNTNRLAECIATARHQHIHPATKSVH*	.	hypothetical_protein	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0094	cloud	direct	high	218	0.995	GCA_000953455.1_04002
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3992364	3992648	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	78851	79135	GCA_000953455_1_1_3850	GCA_000953455_1_1_3850	-	4696984	.	.	hypothetical protein	MAKTYAVCQINGLIRFVDQPPAEGHISLAVGELGVVRQVIRETAEPVPAPRGSIAHRVPGVDPDTAERANLGAIARYIQTLNQHDVPGFRALGA*	.	hypothetical_protein	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0095	cloud	direct	high	284	0.996	GCA_000953455.1_04003
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3992650	3993288	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	79137	79775	GCA_000953455_1_1_3851	GCA_000953455_1_1_3851	-	4696984	.	pfam11363	Protein of unknown function (DUF3164). This family of proteins has no known function.	MNAHTQPIPEGYRRDAQGRLVHESMIKPIDQERDRLVMHLVDRASELSNELADFKGMAFGDVRAFIEMSFEEYGAKIGGKKGNVTLHGFDGRYKVQISVQETTAFDERLQAARALIDECLAEWTQGARPEVVTLVNDAFRTDTKGEIRTARVLALHRLEIADERWQRAMKAISDSCQAVGSKSYLRFYERVGDSDQYRPISLDIAAIALPEA*	mmseqs_cdd	nonviral_gene	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0096	cloud	direct	high	638	0.998	GCA_000953455.1_04004
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3993304	3993609	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	79791	80096	GCA_000953455_1_1_3852	GCA_000953455_1_1_3852	-	4696984	.	.	hypothetical protein	MTTERPLKVLTEGLAVRLHDFNHAARQLQGLGVRLLQILPNENRLQVSPEDARWLLSNRRLDGFTRSRSAGSTRYTAQFEGVTLAWIEPISYRDFIRNTLH*	.	hypothetical_protein	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0097	cloud	direct	high	305	0.997	GCA_000953455.1_04005
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3993599	3993928	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	80086	80415	GCA_000953455_1_1_3853	GCA_000953455_1_1_3853	-	4696984	.	3MZ1_B	Putative transcriptional regulator	MTTWLDLLSAEVKASSMQKAATRLGISRTAVSLCLSGKYGASTDRVEAKVWDVLGQVDCLALGEPISPTACRDYRERKPPLHNSVAMRHWRACQHCPNNPNCMEQRHDH*	hhsuite_tools	hypothetical_protein	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0098	cloud	direct	high	329	0.997	GCA_000953455.1_04006
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3993925	3994536	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	80412	81023	GCA_000953455_1_1_3854	GCA_000953455_1_1_3854	-	4696984	.	PFAM:PF05158.11	transcriptional-regulator	MMATGRKPVHLEQRGGKSNRQRVWEAIRQQRSGLTCYDLARRARVTEATVRTYLQALINGGYLEAEPTDTPPSIGQTRPLRLIRDSGSEAPALKRDGTSCTQGLGTEAMWRALRILGETSAEELARYASAAVPTTTATAKSYLRFLALAGYVQVARRVGKPSRYRMVQARYSGPRPPMIQRTKQVYDPNLGKVVWAEAPEDHL*	phrogs_hmm	hypothetical_protein	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0099	cloud	direct	high	611	0.998	GCA_000953455.1_04007
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3994533	3995273	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	81020	81760	GCA_000953455_1_1_3855	GCA_000953455_1_1_3855	-	4696984	.	COG2842	Bacteriophage DNA transposition protein, AAA+ family ATPase  [Mobilome: prophages, transposons]. 	MSNLNLPLSNGMAQIANLGLCDIALERALSRTSSLPGLVCFYGPSGYGKSMSAAWVANARRAYYVQAKSVWSKKHTLKSILGEMGIKALGTIPEMADQVAEELAASGRPLIIDEMDHLVASGTVELVRDIYESSQAAILLIGEEGLPTKLKKFERFHGRVLSWVPAQPVTLADAHSLVPVYSPQVGIAEDLLAHVVTIANGSVRRVAVNLEMIRDTALTMGLDQMDRAVWGSRELYTGEAPKRRVA*	mmseqs_cdd	nonviral_gene	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0100	cloud	direct	high	740	0.999	GCA_000953455.1_04008
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3995296	3997536	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	81783	84023	GCA_000953455_1_1_3856	GCA_000953455_1_1_3856	-	4696984	.	PDB:1BCO_A	Mu-Transposase	MRNWYTATELAGLPGVPGTDRNVRAMADREGWEGQRRLGSKAIEYHIAVLPETTRAALLKQAVDTVTVEQPASLPAVRTERVALRPLSASGALTHRQVLTRDARLLIVNMLKRMQREGLSQRRACTQLLGWAANGELQGNVLIALALGNNKSGVEWNISTNAEGLTTVEAMPGQDVQAAACAVSSRTLERWLEMERNGGADALAPGKREKDMSIKPWVPYLLAEMQRPQKPCLTDAWRAMCKALPEGITAPSYDAVYRWYSQKYSSLDKQRGRNQGSALNPHKYSRTRSSSGMLPMQEIHSDGWGTHFTAPHPVSGKYVKLECWHTHDVATRYVFRPSVGLSESMLVILGSLFNAVAEGGPPAVWQTDNTGSVKNDRVQFDPVTSIQARAGIHIVHNLPGNSQANGICENFNKYLDRRARELATYMGKGMDSLAQKRVLRVTQKLVKAEGLAERRRLKAEAEKLGSGHLVQSFEEAQALLEQWCDDFNNTPHSALPKISDPVTGKRRHQTPAEAWAEHVANGWQPLAVEGEQLRDLFRPHETKVVQRAKVRLYNQFYHHPELEHWNGEEVQVAYDVHDGERVWVKTREGRLICEAKLDSVRGYRAQSVYEMAMEKRADAAIARHEAHIAEIERQRPVHVISHDAPLSIPGLGDITPERLNARFAEGLTLEGEAQRVPAPEPQQAPIPEPAKADVFTLPESPAQRYRQWRELEARVLAGESLNSTQEQRWFELYPQSKEFAAQQRQA*	common_virus_hmm	common_virus	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0101	cloud	direct	high	2240	1.0	GCA_000953455.1_04009
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3997589	3998056	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	84076	84543	GCA_000953455_1_1_3857	GCA_000953455_1_1_3857	+	4696984	.	.	hypothetical protein	MISEEEFREMQEEMDEMRDAIDRLAAMNEALQEALFAALQSTPVRQELFASLIDRTLDQWLLQRRQLDSDDSLFLRRVRDDVLAKLPEGSLGFPPAKPRPALRAVPVLRPNGAAPKPGAVPTGAGHAPRPGGTPPDGQPLAPHGSGDESHSGKDE*	.	hypothetical_protein	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0102	.	unmatched_CDS	none	0	0	.
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3998069	3998512	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	84556	84999	GCA_000953455_1_1_3858	GCA_000953455_1_1_3858	-	4696984	.	PFAM:PF06892.10	transcriptional-regulator	MNMRHGKDDRTYDLFEIPQPVLAVPGQGNYSVQVSELVGEMLKASDLDRYEVAARMSRLSGDDVSKAMLDAWSSQARTDHNLPFYRAALLEEVCASHLLTNWQVALRGGRVAYGRDALLAELGRLERTRDEAARQARELKRAMGERT*	phrogs_hmm	hypothetical_protein	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0103	cloud	direct	high	443	0.998	GCA_000953455.1_04010
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3998509	3998958	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	84996	85445	GCA_000953455_1_1_3859	GCA_000953455_1_1_3859	-	4696984	.	COG3423	Predicted transcriptional regulator, lambda repressor-like DNA-binding domain [Transcription]. 	MHFYPIAYALFSAYVYAVRHVKPHYVTTPPGGLWIYDMNTAEIPSDPGLRWEWIKFQLRAKGTSLAKLARELHVSGQAVKNVKRTAYPRMERAIAKALGLDVEKLWPERWDANGNPNRMRPKRPEAMPASTQKHNAAYDLGHRKTGAGE*	mmseqs_cdd	nonviral_gene	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0104	cloud	direct	moderate	339	0.753	GCA_000953455.1_04011
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3999015	3999710	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	85502	86197	GCA_000953455_1_1_3860	GCA_000953455_1_1_3860	+	4696984	.	PDB:2FJR_A	Repressor-protein-CI	MTYVESDESDAAKAERPIPLGGVGCFGDRLKEVMGSTAARAFARNCGLSEGAIRSYLSGETFPTLDRLAQIAHASKVDAMWLAFGGTAKVEEDAYAYIPLYDARCSAGNGAWNERSRVLVNLSFTRYSLRKKGLTPDNLVCLRVDGDSMMGLLEDGDTVMIDQSRNMLEGEGVYVVLLDDHLYAKRLQRQFDGSVLIISHNKEYKEMTVPKDRLAELQIIGRVVWAGGWMI*	common_virus_hmm	common_virus	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0105	cloud	direct	high	696	1.0	GCA_000953455.1_04012
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	3999885	4000829	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	86372	87316	GCA_000953455_1_1_3861	GCA_000953455_1_1_3861	-	4696984	.	PFAM:PF13808.5	DDE_Tnp_1-associated-transposase	MSHHIPISDVLVAINDPRQQGKIRHDLVETLVVAICGVLAGADTFIEIELWAEQRLDWFRRILKLPHGIPSHDTFGRLFSLIDPEEFEQAFRCWVAAILPALSPQVVALDGKTSRRSGKKNTAPLHLVSAFAADSGLILGQRATSQKSNEKTAIPELLATLALEGCTVTIDAMGTQPDIAQAILDRGAHYLLAIKGNQPKLAEAIDDFADTFLDGDPARVPHAHFEHVEKDHGRLEVRRCHVFDQLQCLPQPERWSGLRTFVMLESERTVGNQTSLERRYYISSLAPDAERIAHAIRVLALVAFRSSKNEAVRK*	common_virus_hmm	common_virus	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0106	persistent	direct	high	944	0.999	GCA_000953455.1_04013
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	4000981	4001193	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	87468	87680	GCA_000953455_1_1_3862	GCA_000953455_1_1_3862	-	4696984	.	PFAM:PF00717.22	UmuD-like-protein	MTGAGIFDGYILVVDKAKRPQPGDVVLAIVGAEFLVKRLQFDCEGRAMLMARSWRCGVCACGYCKRCRLA*	phrogs_hmm	hypothetical_protein	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0107	persistent	direct	high	212	0.995	GCA_000953455.1_04014
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	CDS	4001892	4003112	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	88379	89599	GCA_000953455_1_1_3863	GCA_000953455_1_1_3863	+	4696984	.	COG1373	Predicted ATPase, AAA+ superfamily [General function prediction only]. 	MYARIIRQNLLAALDDSPVVLVNGARQTGKSTLIQNLGREATYYTFDDPAVLAAAQVDPFGFINALKGAVCLDEVQRAPGVFLAIKAAVDRDRTPGRFLLTGSANVLLLPQIADSLAGRMEVLNLWPLAQSEIERQPLSMIDRLFSGQMPDKCHFERQDFIARLSRGGYPEALSRSGERRREAWFESYLHTILQRDVRDLAQIEGLTEMPRLMQLLGARSGGLLNAAELSRSTGIPQTTLKRYLTLLETLFLVRQVPAWSSNLGKRLQKSPKLFVTDYGLMAHLQGLSEAGMAAGLGLPGDLVEDFVHAELVKHQSWSDLRTRLMHYRTSTGVEVDFVLENRRGDLVGIEVKAAATISGKDFNGLRHLREITPQQFKRGVVFYSGDQVVPFDEQLVAVPLALFWSV*	mmseqs_cdd	nonviral_gene	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_CDS_0108	persistent	direct	high	1220	0.999	GCA_000953455.1_04015
GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote	cenote	tRNA	3924373	3924449	GCA_000953455.1	LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455.1_LK391695.1	GCA_000953455.1|LK391695.1	GCA_000953455_1_1	GCA_000953455_1_1@C238	10860	10936	tRNA-Met	tRNA-Met	+	4696984	.	tRNAscan-SE score: 82.1	Met	NA	tRNAscan-SE	.	C238	89599	3913514	4003113	GCA_000953455.1|LK391695.1@region_3913515_4003113@tool_cenote_tRNA_0001	.	.	.	.	.	.