core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_001008205.1|LCTK01000024.1@region_14410_34699@tool_cenote	cenote	CDS	14409	14738	GCA_001008205.1	LCTK01000024.1	GCA_001008205.1|LCTK01000024.1	GCA_001008205.1_LCTK01000024.1	GCA_001008205.1|LCTK01000024.1	GCA_001008205_1_23	GCA_001008205_1_23@C3	1	330	GCA_001008205_1_23_16	GCA_001008205_1_23_16	+	42749	.	TIGR00103	DNA-binding protein, YbaB/EbfC family. The function of this protein is unknown, but it has been expressed and crystallized. Its gene nearly always occurs next to recR and/or dnaX. It is restricted to Bacteria and the plant Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A member is present even in the minimal gene complement of Mycoplasm genitalium. [Unknown function, General]	MFGKGGLGGLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKITINGAHNCRRIDIDPSLMEDDKEMLEDLIAAAFNDAVRRAEELQKEKMASVTAGMPLPPGMKFPF*	mmseqs_cdd	nonviral_gene	C3	20290	14409	34699	GCA_001008205.1|LCTK01000024.1@region_14410_34699@tool_cenote_CDS_0001	persistent	direct	high	329	0.997	GCA_001008205.1_01110
GCA_001008205.1|LCTK01000024.1@region_14410_34699@tool_cenote	cenote	CDS	14801	15403	GCA_001008205.1	LCTK01000024.1	GCA_001008205.1|LCTK01000024.1	GCA_001008205.1_LCTK01000024.1	GCA_001008205.1|LCTK01000024.1	GCA_001008205_1_23	GCA_001008205_1_23@C3	393	995	GCA_001008205_1_23_17	GCA_001008205_1_23_17	+	42749	.	COG0353	Recombinational DNA repair protein RecR [Replication, recombination and repair]. 	MQSSPLLEHLIENLRCLPGVGPKSAQRMAYHLLQRNRSGGMNLARALTEAMSKIGHCSQCRDFTEEDTCNICNNPRRQNSGLLCVVEMPADIQAIEQTGQFSGRYFVLMGHLSPLDGIGPREIGLDLLQKRLVEESFHEVILATNPTVEGDATANYIAEMCRQHNIKVSRIAHGIPVGGELETVDGTTLTHSFLGRRQID*	mmseqs_cdd	nonviral_gene	C3	20290	14409	34699	GCA_001008205.1|LCTK01000024.1@region_14410_34699@tool_cenote_CDS_0002	persistent	direct	high	602	0.998	GCA_001008205.1_01111
GCA_001008205.1|LCTK01000024.1@region_14410_34699@tool_cenote	cenote	CDS	15419	17374	GCA_001008205.1	LCTK01000024.1	GCA_001008205.1|LCTK01000024.1	GCA_001008205.1_LCTK01000024.1	GCA_001008205.1|LCTK01000024.1	GCA_001008205_1_23	GCA_001008205_1_23@C3	1011	2966	GCA_001008205_1_23_18	GCA_001008205_1_23_18	+	42749	.	PDB:5D5H_A	DNA-topoisomerase-1	MRLFIAEKPSLARAIADVLPKPHQRGDGFIKCGDNDVVTWCVGHLLEQAEPDAYDPKFKQWRLEHLPIIPEKWQLLPRKEVKKQLSVVEKLIHQADTLINAGDPDREGQLLVDEVFSYANLSAEKRDKILRCLISDLNPSAVEKAVKKLQSNRNFIPLATSALARARADWLYGINMTRAYTIRGRQTGYDGVLSVGRVQTPVLGLIVRRDLEIEHFQPKDFFEVLAWINPENKEEKTQEKSTALFSALWQPSKACEDYQDDDGRVLSKGLAENVVKRITNQPAEVTEYKDVREKETAPLPYSLSALQIDAAKRFGMSAQAVLDTCQRLYETHRLITYPRSDCRYLPEEHFAERHNVLNAISTHCEAYQRLPNVISTEQKNRCWNDKKVEAHHAIIPTAKNRPVNLTQEERNIYNLIARQYLMQFCPDAEYRKSKITLNISGGTFIAQARNLQTAGWKELLGKEDETENQEPLLPIVKKGQILHCERGEVMSKKTQPPKPFTDATLLSAMTGIARFVQDKDLKKILRETDGLGTEATRAGIIELLFKRGFLTKKGRNIHSTETGRILIQALPDIATQPDMTAHWESQLTDISQKQATYQQFMHNLNQMLPDLVRFVDLNALRQLSRIKMIKSDRAKPKSAVKKSSKSNGQTD*	common_virus_hmm	common_virus	C3	20290	14409	34699	GCA_001008205.1|LCTK01000024.1@region_14410_34699@tool_cenote_CDS_0003	persistent	direct	high	1955	0.999	GCA_001008205.1_01112
GCA_001008205.1|LCTK01000024.1@region_14410_34699@tool_cenote	cenote	CDS	17483	17821	GCA_001008205.1	LCTK01000024.1	GCA_001008205.1|LCTK01000024.1	GCA_001008205.1_LCTK01000024.1	GCA_001008205.1|LCTK01000024.1	GCA_001008205_1_23	GCA_001008205_1_23@C3	3075	3413	GCA_001008205_1_23_19	GCA_001008205_1_23_19	+	42749	.	COG1314	Preprotein translocase subunit SecG [Intracellular trafficking, secretion, and vesicular transport]. 	MYQVLLFIYVVVAIALIGFILVQQGKGANAGASFGGGASGTMFGSAGAGNFLTRTSAILATAFFVIALVLGNMNSHKGNIQKGAFDDLSQAAEQVQQQAAPAKDNKNSDIPQ*	mmseqs_cdd	nonviral_gene	C3	20290	14409	34699	GCA_001008205.1|LCTK01000024.1@region_14410_34699@tool_cenote_CDS_0004	persistent	direct	high	338	0.997	GCA_001008205.1_01113
GCA_001008205.1|LCTK01000024.1@region_14410_34699@tool_cenote	cenote	CDS	17747	18019	GCA_001008205.1	LCTK01000024.1	GCA_001008205.1|LCTK01000024.1	GCA_001008205.1_LCTK01000024.1	GCA_001008205.1|LCTK01000024.1	GCA_001008205_1_23	GCA_001008205_1_23@C3	3339	3611	GCA_001008205_1_23_20	GCA_001008205_1_23_20	-	42749	.	.	hypothetical protein	MRGESAINPCETWIKQNPAISFAGLCLVKWCSGRDLNSHDLWSLPPQDSVSTNSTTRALIFYANPILLWDVAIFIVFRWSCLLLNLLGSL*	.	hypothetical_protein	C3	20290	14409	34699	GCA_001008205.1|LCTK01000024.1@region_14410_34699@tool_cenote_CDS_0005	persistent	ambiguous	low	76	0.278	GCA_001008205.1_01113
GCA_001008205.1|LCTK01000024.1@region_14410_34699@tool_cenote	cenote	CDS	18120	19346	GCA_001008205.1	LCTK01000024.1	GCA_001008205.1|LCTK01000024.1	GCA_001008205.1_LCTK01000024.1	GCA_001008205.1|LCTK01000024.1	GCA_001008205_1_23	GCA_001008205_1_23@C3	3712	4938	GCA_001008205_1_23_21	GCA_001008205_1_23_21	+	42749	.	PDB:1Z19_B	Integrase	MARIVKPLSPTEIKNAKPKEKEYTLSDGEGLLLLILPSGSKSWRFNYARPLTGKRTKMALGGYPELSLADARAKREEYRALLAKGIDPQEEKIRIQQEYENRLKDTFHSVAESYFNGIYKEKAKNPETREKNWERLKNHIFPYIGDKHVSEIKVKELVSIYEKIADRSNTLKKIHQLVGAIMDHAITKGIIESHNCRLAVKNFYIKSSTPHPTIKLDELSKLFQDLENARIGKKTYLLICWSFLTALRPKEAVNAEWSEIDFDNKLWNIPKEKMKGQADKKRPHTVPLSSQAIQLLEVMKLFSENSSFVFAGRSSKNQPMNKATVNVALKRIGYKDKLTAHGIRAFIKTFLASHKVERNVSETILSHLLEGGDDLENTYNRYNYLEERKPIMQLIGDYCESCGMNLNL*	common_virus_hmm	common_virus	C3	20290	14409	34699	GCA_001008205.1|LCTK01000024.1@region_14410_34699@tool_cenote_CDS_0006	shell	direct	high	1226	0.999	GCA_001008205.1_01115
GCA_001008205.1|LCTK01000024.1@region_14410_34699@tool_cenote	cenote	CDS	19518	21287	GCA_001008205.1	LCTK01000024.1	GCA_001008205.1|LCTK01000024.1	GCA_001008205.1_LCTK01000024.1	GCA_001008205.1|LCTK01000024.1	GCA_001008205_1_23	GCA_001008205_1_23@C3	5110	6879	GCA_001008205_1_23_22	GCA_001008205_1_23_22	-	42749	.	PFAM:PF04735.11	DNA-helicase	MARLINAPHLADQIHEPYSDIFILAGRKAWQAWDNGKGEEWLLLCSLIHGLDSTIKPVILAEKQLENISSIRIVKEDQQSVKLIQYGELAQAEITAICQNLAKNSNAIDVKLLDAAAQTKEDLSAYIQRLRNDKETADLAEQLAPPEKLKEKDGTNKKSRAFQKWLNLDMALQRGCREIYAYDGKTWNKQENDDLEEKAVKFLDENEFNYSDSTIDRLIKTLKAQLPRMGEMSNDLIAFENGVLNRNTMEFESHNRQNWLTSCIPHKYDKHATDTPHFDKWLSFVSDGNKEKARNILAVLYAILTNRYNWQMFFEITGKGGSGKSVFASIATLLAGVKNTASSNLEKFDDERGLSGLENKTLILCPEQSKYAGDGSGLKSITGGDTVRVRYNYQDPFDVKITALVMLINNRPCSFTERSGGVDRRRVIFDFKKIVPEDERDPHFMDKITLEVGGIIRKVFDSFPDPSDAKKALKAQMESQEALEVKKLSDPLTDFFGYFYTTEQTDGLFIGVTNMGLDKIRTHLYPAYLAYTKAMNIGELGLNNFVIGVEQALKQNGNKHDFIKRHTKTGRRTNIHFKDFDSFRNEMFS*	rep_hall_hmm	common_virus	C3	20290	14409	34699	GCA_001008205.1|LCTK01000024.1@region_14410_34699@tool_cenote_CDS_0007	shell	direct	high	1769	0.999	GCA_001008205.1_01116
GCA_001008205.1|LCTK01000024.1@region_14410_34699@tool_cenote	cenote	CDS	21271	21714	GCA_001008205.1	LCTK01000024.1	GCA_001008205.1|LCTK01000024.1	GCA_001008205.1_LCTK01000024.1	GCA_001008205.1|LCTK01000024.1	GCA_001008205_1_23	GCA_001008205_1_23@C3	6863	7306	GCA_001008205_1_23_23	GCA_001008205_1_23_23	-	42749	.	.	hypothetical protein	MDMNQKLDYSKLSALELKAIAMSYRNMLENKGETFHSSLPYLSGAIEVLAEELADCPAMNIDELKILHDELLMVNKHLLQMAPKPPSSNPEEIVATLTNDEIIDGLLKNSIALSLVKTFKYFQEVIADRINAIENGVIKGVNNGTIN*	.	hypothetical_protein	C3	20290	14409	34699	GCA_001008205.1|LCTK01000024.1@region_14410_34699@tool_cenote_CDS_0008	cloud	direct	high	443	0.998	GCA_001008205.1_01117
GCA_001008205.1|LCTK01000024.1@region_14410_34699@tool_cenote	cenote	CDS	21716	22264	GCA_001008205.1	LCTK01000024.1	GCA_001008205.1|LCTK01000024.1	GCA_001008205.1_LCTK01000024.1	GCA_001008205.1|LCTK01000024.1	GCA_001008205_1_23	GCA_001008205_1_23@C3	7308	7856	GCA_001008205_1_23_24	GCA_001008205_1_23_24	-	42749	.	.	hypothetical protein	MKPSNPMQQLQQWKANNGKSNKLKNELVKSANQPNSGLVKNTQGNVGSETKNKYQGKLCANPLAFKCSQLTRQFKLILDSNRKCLEVYPDDFHHKIKFRDELTDLVVRLKTGGKLFNEMVKAQGAKLSSNNQETIRNFNQANDYLIHKFGEVIKQIEQLQVEYVNSVVLLKNEKNLIVSEGK*	.	hypothetical_protein	C3	20290	14409	34699	GCA_001008205.1|LCTK01000024.1@region_14410_34699@tool_cenote_CDS_0009	shell	direct	high	548	0.998	GCA_001008205.1_01118
GCA_001008205.1|LCTK01000024.1@region_14410_34699@tool_cenote	cenote	CDS	22251	22457	GCA_001008205.1	LCTK01000024.1	GCA_001008205.1|LCTK01000024.1	GCA_001008205.1_LCTK01000024.1	GCA_001008205.1|LCTK01000024.1	GCA_001008205_1_23	GCA_001008205_1_23@C3	7843	8049	GCA_001008205_1_23_25	GCA_001008205_1_23_25	-	42749	.	.	hypothetical protein	MKAKKIKAFKAPYTPTPEQLEKSYKRIKQFLAFAEDYLHSGHYKGLAASIEQIKKAATIRKVAQHETK*	.	hypothetical_protein	C3	20290	14409	34699	GCA_001008205.1|LCTK01000024.1@region_14410_34699@tool_cenote_CDS_0010	shell	direct	high	206	0.995	GCA_001008205.1_01119
GCA_001008205.1|LCTK01000024.1@region_14410_34699@tool_cenote	cenote	CDS	22447	22647	GCA_001008205.1	LCTK01000024.1	GCA_001008205.1|LCTK01000024.1	GCA_001008205.1_LCTK01000024.1	GCA_001008205.1|LCTK01000024.1	GCA_001008205_1_23	GCA_001008205_1_23@C3	8039	8239	GCA_001008205_1_23_26	GCA_001008205_1_23_26	-	42749	.	.	hypothetical protein	MTEQVNLPYQLIFVYDDGSQFIAGKYGTLREALQAKIRCKHEIGQADICSRVLEVISVLKGEDNES*	.	hypothetical_protein	C3	20290	14409	34699	GCA_001008205.1|LCTK01000024.1@region_14410_34699@tool_cenote_CDS_0011	shell	direct	high	200	0.995	GCA_001008205.1_01120
GCA_001008205.1|LCTK01000024.1@region_14410_34699@tool_cenote	cenote	CDS	22640	22888	GCA_001008205.1	LCTK01000024.1	GCA_001008205.1|LCTK01000024.1	GCA_001008205.1_LCTK01000024.1	GCA_001008205.1|LCTK01000024.1	GCA_001008205_1_23	GCA_001008205_1_23@C3	8232	8480	GCA_001008205_1_23_27	GCA_001008205_1_23_27	-	42749	.	.	hypothetical protein	MANRIIQVEQCQINLLKLQMDGLSQLESMLLALYINPDVFDEMDSFDIAYTIKGIKNLLSYIKVDMEERIAFIEGLQEESND*	.	hypothetical_protein	C3	20290	14409	34699	GCA_001008205.1|LCTK01000024.1@region_14410_34699@tool_cenote_CDS_0012	cloud	direct	high	248	0.996	GCA_001008205.1_01121
GCA_001008205.1|LCTK01000024.1@region_14410_34699@tool_cenote	cenote	CDS	22881	23480	GCA_001008205.1	LCTK01000024.1	GCA_001008205.1|LCTK01000024.1	GCA_001008205.1_LCTK01000024.1	GCA_001008205.1|LCTK01000024.1	GCA_001008205_1_23	GCA_001008205_1_23@C3	8473	9072	GCA_001008205_1_23_28	GCA_001008205_1_23_28	-	42749	.	PF10554.9	Ash protein family	MNLIHKYYINNENFYNLNPLQSAVKFGIIFPQLEKVIASRGKLNLIKANDSTPQNRAFFVRNIRTPQEYADFVFNLNPIILSMVERNEQSLTGCLPLLAVFHLVTLYRPTVESLAVVPKNQIKDTAEMIYKFLCVNRTQSHFNLCVISLNSTTEEQARLSLSADYRFIAVVARINPQNDRTLAALPTLSTSAAMEVAHG*	hhsuite_tools	hypothetical_protein	C3	20290	14409	34699	GCA_001008205.1|LCTK01000024.1@region_14410_34699@tool_cenote_CDS_0013	cloud	direct	high	599	0.998	GCA_001008205.1_01122
GCA_001008205.1|LCTK01000024.1@region_14410_34699@tool_cenote	cenote	CDS	23570	23791	GCA_001008205.1	LCTK01000024.1	GCA_001008205.1|LCTK01000024.1	GCA_001008205.1_LCTK01000024.1	GCA_001008205.1|LCTK01000024.1	GCA_001008205_1_23	GCA_001008205_1_23@C3	9162	9383	GCA_001008205_1_23_29	GCA_001008205_1_23_29	-	42749	.	COG3311	Predicted DNA-binding transcriptional regulator AlpA [Transcription, Mobilome: prophages, transposons]. 	MNEAQKLNLKLNPQQKLISGETACHIVGFGRTKLNELVKAKKFPQPIRFSQNFVRWDLEEVNQWIEEQKAARA*	mmseqs_cdd	nonviral_gene	C3	20290	14409	34699	GCA_001008205.1|LCTK01000024.1@region_14410_34699@tool_cenote_CDS_0014	cloud	direct	high	221	0.995	GCA_001008205.1_01124
GCA_001008205.1|LCTK01000024.1@region_14410_34699@tool_cenote	cenote	CDS	23963	24802	GCA_001008205.1	LCTK01000024.1	GCA_001008205.1|LCTK01000024.1	GCA_001008205.1_LCTK01000024.1	GCA_001008205.1|LCTK01000024.1	GCA_001008205_1_23	GCA_001008205_1_23@C3	9555	10394	GCA_001008205_1_23_30	GCA_001008205_1_23_30	-	42749	.	.	hypothetical protein	MKEKEDFFTDIRRTLGKKISSELSRLAYEIEELLSNLTLKEIKDTQAWIDETIDMYYQEELDNAIKNAMEFVEYEEDEDGYYSSYNPYLTMITKDEYGPDINLIMEDFNVETRDSDYDSSTLEWLLEINYRDTGLIDGIKNYQIMAIMALDYIDRFINGDSFFKDNSFNNDKQYQAFWIYIAAKDMKYSLEVETIKLDVQKEIKKKAADARHRENKRMKEMVINKWKSYKNQKLKEGKTPSKNAFAERIFKELQTANKKDSNVKAYSLKTIRTNWLQGI*	.	hypothetical_protein	C3	20290	14409	34699	GCA_001008205.1|LCTK01000024.1@region_14410_34699@tool_cenote_CDS_0015	cloud	direct	high	839	0.999	GCA_001008205.1_01125
GCA_001008205.1|LCTK01000024.1@region_14410_34699@tool_cenote	cenote	CDS	24903	25286	GCA_001008205.1	LCTK01000024.1	GCA_001008205.1|LCTK01000024.1	GCA_001008205.1_LCTK01000024.1	GCA_001008205.1|LCTK01000024.1	GCA_001008205_1_23	GCA_001008205_1_23@C3	10495	10878	GCA_001008205_1_23_31	GCA_001008205_1_23_31	-	42749	.	.	hypothetical protein	MIKSVLSAFGSFVFSALDFLLFLAILLFVGLLVFIFWPILKWLLLAFLIGAIAFFCYLIYKIKEKPKPLEQDETLSSWAEQELQRPIIQRILQKQEENKPFISGTITHIGNDGKETRLGNITINLKK*	.	hypothetical_protein	C3	20290	14409	34699	GCA_001008205.1|LCTK01000024.1@region_14410_34699@tool_cenote_CDS_0016	shell	direct	high	383	0.997	GCA_001008205.1_01126
GCA_001008205.1|LCTK01000024.1@region_14410_34699@tool_cenote	cenote	CDS	25484	25771	GCA_001008205.1	LCTK01000024.1	GCA_001008205.1|LCTK01000024.1	GCA_001008205.1_LCTK01000024.1	GCA_001008205.1|LCTK01000024.1	GCA_001008205_1_23	GCA_001008205_1_23@C3	11076	11363	GCA_001008205_1_23_32	GCA_001008205_1_23_32	-	42749	.	.	hypothetical protein	MIRCKEAKQNLLLSAVKHYKKNNHTFTFISLYDNEEPYPIEEVIYALRCKCDAAKREIDSRPNSPNMEVLETIYHIAHKNLEDMKKAKSRIEQKA*	.	hypothetical_protein	C3	20290	14409	34699	GCA_001008205.1|LCTK01000024.1@region_14410_34699@tool_cenote_CDS_0017	cloud	direct	high	287	0.997	GCA_001008205.1_01127
GCA_001008205.1|LCTK01000024.1@region_14410_34699@tool_cenote	cenote	CDS	26092	27759	GCA_001008205.1	LCTK01000024.1	GCA_001008205.1|LCTK01000024.1	GCA_001008205.1_LCTK01000024.1	GCA_001008205.1|LCTK01000024.1	GCA_001008205_1_23	GCA_001008205_1_23@C3	11684	13351	GCA_001008205_1_23_33	GCA_001008205_1_23_33	-	42749	.	CDD:COG4626	Large-Terminase	MAIWHEYAEKIQSGEIVACKKIKQAVARYFNDLNNPDYFFDQSAVEKFIAFSKLCPHVKGHLRGEPIILSDWQVFLFANILGFKRKDTGLRKYRSAYVQVARKNAKSTVAAVLANWFLVMEGGQQDIYTAAVSRDQARIVFDDARQMCLLSPLLKKRLNIQQHKLINPKNNSIMRPLAAKSSTIEGTNPSLAIVDEYHLHTDNSVYSALELGQGARPEGLLFAITTAGSNVISACKQHYDYCAQILEGNEQNDSLFVLIFELDEENEIDKQENWIKANPNIGKSIPYLDFENTIKKARGIPSEWVEMLTKRFNVWCQGTTPWLGEGNWAQCERQYTESDLLHQDCYLGLDLSSTNDLTSLCYTFPQGKKVRLVTRHYIPEFQLNNVANKNRAMYRNWVRSGWLIATEGDCIDYDKIRDDILKDAQRFNIKMIGFDVWNATHLRTQLQAAGLEVEPFPQTYQRFSPVAKSAEVLINRLMIEHNGDPVLAWALSNVVMETDANANIKPNKKKAANKIDPAIAFLMSFGTYQLEYGDLIFELSDEHRKIIDEFTGLDL*	hallmark_hmm	common_virus	C3	20290	14409	34699	GCA_001008205.1|LCTK01000024.1@region_14410_34699@tool_cenote_CDS_0018	shell	direct	high	1667	0.999	GCA_001008205.1_01128
GCA_001008205.1|LCTK01000024.1@region_14410_34699@tool_cenote	cenote	CDS	27767	28141	GCA_001008205.1	LCTK01000024.1	GCA_001008205.1|LCTK01000024.1	GCA_001008205.1_LCTK01000024.1	GCA_001008205.1|LCTK01000024.1	GCA_001008205_1_23	GCA_001008205_1_23@C3	13359	13733	GCA_001008205_1_23_34	GCA_001008205_1_23_34	-	42749	.	CDD:COG3747	Small-Terminase	MTAKKKNLHTPPSFLDPIAKSVWKERIPQLLERGDIQDADLIHLELYCVNYSLFRAAVEDIHKNGFSIVNSQGTQSRNPALSAKADAEKVMVKMSSLLGFDPVSRRKNPVEVDSTDMIDEILTM*	hallmark_hmm	common_virus	C3	20290	14409	34699	GCA_001008205.1|LCTK01000024.1@region_14410_34699@tool_cenote_CDS_0019	shell	direct	high	374	0.997	GCA_001008205.1_01129
GCA_001008205.1|LCTK01000024.1@region_14410_34699@tool_cenote	cenote	CDS	28243	28428	GCA_001008205.1	LCTK01000024.1	GCA_001008205.1|LCTK01000024.1	GCA_001008205.1_LCTK01000024.1	GCA_001008205.1|LCTK01000024.1	GCA_001008205_1_23	GCA_001008205_1_23@C3	13835	14020	GCA_001008205_1_23_35	GCA_001008205_1_23_35	-	42749	.	PDB:5H0M_A	HNH-endonuclease	MCLEKGIYTPATVIDHIKPVENGQADPLFWVGSNHQSLCRDCHSYKTRVIDQRGFGAKKID*	common_virus_hmm	common_virus	C3	20290	14409	34699	GCA_001008205.1|LCTK01000024.1@region_14410_34699@tool_cenote_CDS_0020	.	unmatched_CDS	none	0	0	.
GCA_001008205.1|LCTK01000024.1@region_14410_34699@tool_cenote	cenote	CDS	28622	28930	GCA_001008205.1	LCTK01000024.1	GCA_001008205.1|LCTK01000024.1	GCA_001008205.1_LCTK01000024.1	GCA_001008205.1|LCTK01000024.1	GCA_001008205_1_23	GCA_001008205_1_23@C3	14214	14522	GCA_001008205_1_23_36	GCA_001008205_1_23_36	-	42749	.	CDD:TIGR01560	uncharacterized-phage-protein-(possible-DNA-packaging)	MAQIELEEIKQHLNLDHDLDDTLLETYKVATLEVCQKHIGKTFGDEETENTVPFTPSIKVGCLMYIAYLYTNREAITDLANLKQAPMTISALWEVYREPCAY*	hallmark_hmm	common_virus	C3	20290	14409	34699	GCA_001008205.1|LCTK01000024.1@region_14410_34699@tool_cenote_CDS_0021	shell	direct	high	308	0.997	GCA_001008205.1_01130
GCA_001008205.1|LCTK01000024.1@region_14410_34699@tool_cenote	cenote	CDS	28917	29261	GCA_001008205.1	LCTK01000024.1	GCA_001008205.1|LCTK01000024.1	GCA_001008205.1_LCTK01000024.1	GCA_001008205.1|LCTK01000024.1	GCA_001008205_1_23	GCA_001008205_1_23@C3	14509	14853	GCA_001008205_1_23_37	GCA_001008205_1_23_37	-	42749	.	PDB:2KZ4_A	Head-tail-adaptor	MAVMLKAGKYNKVIGLQKQVNEPNDYGGIVSKWRTIANVRAAVEPLQGREFFSGAVPLGENIVRVRVRYGIEVDRTMRVKYGTRLLEITNIIDSKESHRELQLICKELLGNGTN*	hallmark_hmm	common_virus	C3	20290	14409	34699	GCA_001008205.1|LCTK01000024.1@region_14410_34699@tool_cenote_CDS_0022	shell	direct	high	344	0.997	GCA_001008205.1_01131
GCA_001008205.1|LCTK01000024.1@region_14410_34699@tool_cenote	cenote	CDS	29245	30477	GCA_001008205.1	LCTK01000024.1	GCA_001008205.1|LCTK01000024.1	GCA_001008205.1_LCTK01000024.1	GCA_001008205.1|LCTK01000024.1	GCA_001008205_1_23	GCA_001008205_1_23@C3	14837	16069	GCA_001008205_1_23_38	GCA_001008205_1_23_38	-	42749	.	CDD:COG4695	Portal-protein	MWNPFRRKEQRSEPTSIEELLSYMGVNNTGAGEFVSPQTAESLPAVMNAVTVISEAVASMPCYLYALKEDGRERIYRHPVEYLLNEMPNRSQTPYQFKNTMMRHCLLNGNAYAVIEWNNKGEPISLTPYQPSAVNIFRKVTGEYIYQITDLNGVTKNYLQDEILHLRHSSVDGFMGRSPITVCRETVGLGLAQQRHGAAIMKNGLMASGLISTAEWLDDAKAQKAVKALERYKGAKNAGKTPILEGSMEYKQLGMTNQDAEWLASRTFTISDIARIYNISPIFLQDYSNSSYANFSEASRAFLSQTLRPWLTNFEQQLKDALMIDLGSNSNKRYLIEFDTSDLLRTSQSERFSSYDIAIKAGVMSPNEVRRREGLPPYEGGDEFSQAWKQTVEVKRGDEQEQGASNGSDA*	hallmark_hmm	common_virus	C3	20290	14409	34699	GCA_001008205.1|LCTK01000024.1@region_14410_34699@tool_cenote_CDS_0023	shell	direct	high	1232	0.999	GCA_001008205.1_01132
GCA_001008205.1|LCTK01000024.1@region_14410_34699@tool_cenote	cenote	CDS	30479	31045	GCA_001008205.1	LCTK01000024.1	GCA_001008205.1|LCTK01000024.1	GCA_001008205.1_LCTK01000024.1	GCA_001008205.1|LCTK01000024.1	GCA_001008205_1_23	GCA_001008205_1_23@C3	16071	16637	GCA_001008205_1_23_39	GCA_001008205_1_23_39	-	42749	.	CDD:COG3740	head-maturation-protease	MKKEFEIRSATISTDEENQKLVGYAVKWNSPSQVLYCDFVESFAPKAFSESLASGEDVRALFEHDYTKLLGRTSAGTLKLEEDSIGLRFELTPPNTTIGKDLLVSVARGDITGMSFGFRASQEEWDFDVEPCQRTVQKAELFEVTVTSIPAYPESSVEIAKRSMIAAKEKTQEHSTALLKQWLDVMEA*	hallmark_hmm	common_virus	C3	20290	14409	34699	GCA_001008205.1|LCTK01000024.1@region_14410_34699@tool_cenote_CDS_0024	shell	direct	high	566	0.998	GCA_001008205.1_01133
GCA_001008205.1|LCTK01000024.1@region_14410_34699@tool_cenote	cenote	CDS	31090	32280	GCA_001008205.1	LCTK01000024.1	GCA_001008205.1|LCTK01000024.1	GCA_001008205.1_LCTK01000024.1	GCA_001008205.1|LCTK01000024.1	GCA_001008205_1_23	GCA_001008205_1_23@C3	16682	17872	GCA_001008205_1_23_40	GCA_001008205_1_23_40	-	42749	.	CDD:COG4653	Major-Capsid-protein	MLKKLIELRQQKAEKVAEMRAMLDKAEKENRSLDETESVDFDKLKDLVKQLSDEINKYETVADEERNLGAQSNPLETRSTKQFSNDELRHYIKTGELRNLTTANGEDGGYSVIPQLDKEVMKRLTDDSVMRQLCNVVRLPIGAKEYKKLVSAGGATVEHGTEGTARNGTASPKLHEVTIALNSIYAYPKTTQEILDFSSIDVLGWLTDEITETFTETEEVDLTSGDGNKKSKGLLTYERTTENDKVRPFGKLQKIEVAGVAKIEADTLIDAFYTLHSKYRKNAVWVMSSTIAAALQKLKNKNGDYIWRDGLTTDAPATLLGRPVYFLETMPIGGANQAVIAFGDFKRGYFIVDHETGVRTRPDNLTEPGFYKVHTDKYLGGGVVDSNAIKVIETTA*	hallmark_hmm	common_virus	C3	20290	14409	34699	GCA_001008205.1|LCTK01000024.1@region_14410_34699@tool_cenote_CDS_0025	shell	direct	high	1190	0.999	GCA_001008205.1_01134
GCA_001008205.1|LCTK01000024.1@region_14410_34699@tool_cenote	cenote	CDS	32932	33063	GCA_001008205.1	LCTK01000024.1	GCA_001008205.1|LCTK01000024.1	GCA_001008205.1_LCTK01000024.1	GCA_001008205.1|LCTK01000024.1	GCA_001008205_1_23	GCA_001008205_1_23@C3	18524	18655	GCA_001008205_1_23_41	GCA_001008205_1_23_41	+	42749	.	.	hypothetical protein	MPSKGLISLLQAVQHIKEIIPAITRSNPYKCTQGPYERFSLLI*	.	hypothetical_protein	C3	20290	14409	34699	GCA_001008205.1|LCTK01000024.1@region_14410_34699@tool_cenote_CDS_0026	cloud	direct	high	131	0.992	GCA_001008205.1_01135
GCA_001008205.1|LCTK01000024.1@region_14410_34699@tool_cenote	cenote	CDS	33622	34698	GCA_001008205.1	LCTK01000024.1	GCA_001008205.1|LCTK01000024.1	GCA_001008205.1_LCTK01000024.1	GCA_001008205.1|LCTK01000024.1	GCA_001008205_1_23	GCA_001008205_1_23@C3	19214	20290	GCA_001008205_1_23_42	GCA_001008205_1_23_42	-	42749	.	PRK11671	membrane-bound lytic murein transglycosylase MltC. 	MKKYLVLALLPLLYACSDSLNRGGMNYDESFAKDTQGLDILTGQFSHNIDRIWGVNELLVASRKDYVKYTDSFYTRSHVSFDEGNIVIETQQDLNRLHNAIVHTLLMGADAKGIDLFASGDVPISSRPFLLGQVVDHQGQQIANQVIASNFATYLIQNKLQTRRLQNGNTVQFVAIPMIANHVEVRAQKYLPLVRKAAERYGIDESLILGIMQTESSFNPYAISYANAIGLMQVVPHTAGRDVFAMKGKGGQPSTRYLYDPANNIDSGVSYLWILQNQYLDGITNPTSKRFAMISAYNSGAGAVLRVFDNDKDMAIYKINQMYPEQVYRILTTAHPSSQARNYLLKVDKAQKKFRVRR*	mmseqs_cdd	nonviral_gene	C3	20290	14409	34699	GCA_001008205.1|LCTK01000024.1@region_14410_34699@tool_cenote_CDS_0027	persistent	direct	high	1076	0.999	GCA_001008205.1_01138
GCA_001008205.1|LCTK01000024.1@region_14410_34699@tool_cenote	cenote	tRNA	17847	17932	GCA_001008205.1	LCTK01000024.1	GCA_001008205.1|LCTK01000024.1	GCA_001008205.1_LCTK01000024.1	GCA_001008205.1|LCTK01000024.1	GCA_001008205_1_23	GCA_001008205_1_23@C3	3439	3524	tRNA-Leu	tRNA-Leu	+	42749	.	tRNAscan-SE score: 57.5	Leu	NA	tRNAscan-SE	.	C3	20290	14409	34699	GCA_001008205.1|LCTK01000024.1@region_14410_34699@tool_cenote_tRNA_0001	.	.	.	.	.	.
GCA_001008205.1|LCTK01000024.1@region_14410_34699@tool_cenote	cenote	tRNA	33313	33385	GCA_001008205.1	LCTK01000024.1	GCA_001008205.1|LCTK01000024.1	GCA_001008205.1_LCTK01000024.1	GCA_001008205.1|LCTK01000024.1	GCA_001008205_1_23	GCA_001008205_1_23@C3	18905	18977	tRNA-Phe	tRNA-Phe	-	42749	.	tRNAscan-SE score: 76.9	Phe	NA	tRNAscan-SE	.	C3	20290	14409	34699	GCA_001008205.1|LCTK01000024.1@region_14410_34699@tool_cenote_tRNA_0003	.	.	.	.	.	.
GCA_001008205.1|LCTK01000024.1@region_14410_34699@tool_cenote	cenote	tRNA	33235	33307	GCA_001008205.1	LCTK01000024.1	GCA_001008205.1|LCTK01000024.1	GCA_001008205.1_LCTK01000024.1	GCA_001008205.1|LCTK01000024.1	GCA_001008205_1_23	GCA_001008205_1_23@C3	18827	18899	tRNA-Asn	tRNA-Asn	-	42749	.	tRNAscan-SE score: 72.6	Asn	NA	tRNAscan-SE	.	C3	20290	14409	34699	GCA_001008205.1|LCTK01000024.1@region_14410_34699@tool_cenote_tRNA_0002	.	.	.	.	.	.