core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote	cenote	CDS	1	2240	GCA_001008215.1	LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215.1_LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215_1_26	GCA_001008215_1_26@C0	1	2241	GCA_001008215_1_26_1	GCA_001008215_1_26_1	-	27689	.	UniProtKB:I6NKY8_9CAUD	Tail-tape-measure-	MADFAQLGIELRSIGVDKVNRDIRSVTDNAKSTERSVQSLLGVMGKLKVLMTAGLGIQGLGQFIQMSDKMKTLAAQVKFVTNSFEEYKAVQSQLFSISQRTRADLEATTTIYARSARALKDYGYSQERILTFTETLNKAMAVGGVGAQEQASALFQLSQALGSGRLQGDEFRTIAESAPIILDVVAQYMGKTRSEVKQLASEGKITSQLLFEAITGATEKISADFEKMPLTFGQAMTQLKNQTLKFVDDVGNRSGIFDGMAASVSFLAKNIDYLSVVIGSVLLGQLGKASVAGIKSVLTKRQEALAALEVAQATSVQATAELRLAQIQMQSLRAQLSLAQSEQTRMALRGQMAAQASQLTVLMNAEREATERAALAKQKLSLAGRASSGVLSLLGGPIGLVTTALTLGAGAFYTWKQNAEQAKMENLDYAKSLDVTSDALQKLTANQLEAMSAKLKRSMAEQKNQIQSLIEEKSRMERALSIQTKSMDEGNLWQNQYALKRYNQLLEDLKIKKGEIDSANQQLAKSERDLKSIGAEESVQRLKESVEKLYPELQFNKDKFVELKLSTEDFKDLLPDANGKILGMADALAQAAQKARLLLSGVIGVKEETAGIGADAQKVIDDLRLDRKIANAKTPQERAAGETEKYIKRLSEQGKYSKSELDAIEKEYQANALARENRSSGAKGSGNKVDYVKQYTDQVTQLQQRLADIKANLQDGGISQYQELKKLTNDIAANGEKYAHFGAEGLA	hallmark_hmm	common_virus	C0	27690	0	27690	GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote_CDS_0001	.	unmatched_CDS	none	0	0	.
GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote	cenote	CDS	2250	2582	GCA_001008215.1	LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215.1_LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215_1_26	GCA_001008215_1_26@C0	2251	2583	GCA_001008215_1_26_2	GCA_001008215_1_26_2	-	27689	.	PFAM:PF05939.12	minor-tail-protein	MNMKEFTWQADWNMKRKKKPNVNTIRFGDGYEQRQSDGINNNLRTYDVVFSGSEEKIKAIDMFLDECRGVTAFSWQPYGDKKGLFTCGEWDETKKTGYSTLTATFKEVVA*	hallmark_hmm	common_virus	C0	27690	0	27690	GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote_CDS_0002	cloud	direct	moderate	327	0.982	GCA_001008215.1_00698
GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote	cenote	CDS	2953	3357	GCA_001008215.1	LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215.1_LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215_1_26	GCA_001008215_1_26@C0	2954	3358	GCA_001008215_1_26_3	GCA_001008215_1_26_3	-	27689	.	PFAM:PF08809.10	Tail-assembly-chaperone	MDFSKLNTVKASENTYRFEVTHPITGEGTGAMIDVYASQSDVVQRFQSNVLRKLQKQEFENQRTRKPQFKELSELKSEALENAIVRVASWENLEWEGTPLEFTPANVKMLLTQCPWLAEQIIEQSEDLGNFLKA*	phrogs_hmm	hypothetical_protein	C0	27690	0	27690	GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote_CDS_0003	cloud	direct	high	404	0.998	GCA_001008215.1_00699
GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote	cenote	CDS	3456	4466	GCA_001008215.1	LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215.1_LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215_1_26	GCA_001008215_1_26@C0	3457	4467	GCA_001008215_1_26_4	GCA_001008215_1_26_4	-	27689	.	PDB:5NGJ_B	Tail-tube-protein	MANAQGVKRKVTFAKETTFGVRAAKGIGKVMPRTESSLNSTFDSFSSEEIRENMQRSPSIVGFEKVEGDLKGELSAGQWSDFFAAALRGTWTEAKSPVLKKTSTGAGEKQGKLLVIPETGHTTDSFTLEDTFADIGLSRIYTGCRVSKISLDIQPNGIASIAVTFLGQKGEESQAAYFTGAQEVTQSAKVAGVNGQLMVNKTKAALVTGLKMDIDLNASSEAVLGAKYAPDVFIGTVAISGSFTMYFQDKTMIDAVRSGANLSLALRMDAESVDNGDYLTFILPGVKATSIEIDDGAKNLIQTLNFDAFPAIYDVESTIDDALKKPTTLIIQDSLA*	hallmark_hmm	common_virus	C0	27690	0	27690	GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote_CDS_0004	cloud	direct	high	1010	0.999	GCA_001008215.1_00700
GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote	cenote	CDS	4475	4867	GCA_001008215.1	LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215.1_LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215_1_26	GCA_001008215_1_26@C0	4476	4868	GCA_001008215_1_26_5	GCA_001008215_1_26_5	-	27689	.	PFAM:PF13554.5	tail-completion-protein	MKQIIRSVLQTHLNQLGQFNTAWEGVLNTPKLPYQTLHLTISSSDTGAISDRPHAEELGFLQLTLFYEAGLGTKAIEERATDIRRHFYGQSFIKDNVQIIIHKPPLIGGIFLNDNKLALPVTINFTAYEL*	hallmark_hmm	common_virus	C0	27690	0	27690	GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote_CDS_0005	cloud	direct	high	392	0.997	GCA_001008215.1_00701
GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote	cenote	CDS	4874	5266	GCA_001008215.1	LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215.1_LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215_1_26	GCA_001008215_1_26@C0	4875	5267	GCA_001008215_1_26_6	GCA_001008215_1_26_6	-	27689	.	PFAM:PF04883.11	tail-component	MGGFSTDIDKFRLRTMQRADALIRKVAIETFERVRAKTPVDTGQLRASWTVSLNNPPSSFSGASNALSSAKFGDTIIIATDKVYAPMLEYGLYPKPGSGKTINGFSIQAPKGMVRITVQEMEALLKKSRW*	hallmark_hmm	common_virus	C0	27690	0	27690	GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote_CDS_0006	cloud	direct	high	392	0.997	GCA_001008215.1_00702
GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote	cenote	CDS	5272	5640	GCA_001008215.1	LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215.1_LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215_1_26	GCA_001008215_1_26@C0	5273	5641	GCA_001008215_1_26_7	GCA_001008215_1_26_7	-	27689	.	PFAM:PF05354.10	Head-Tail-Connector-Protein	MYGKLQNVSTKLIKQFGVRCMVRSEKAGRYNPETGEVESRSRSEESAHCLFDNLAYDFSRSGQNTSNMVQQGDVLIYVTAEANPAINSKIVTDNEKWTVINCQPIKPSGTAVIYQCQARKVE*	hallmark_hmm	common_virus	C0	27690	0	27690	GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote_CDS_0007	cloud	direct	high	368	0.997	GCA_001008215.1_00703
GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote	cenote	CDS	5642	6112	GCA_001008215.1	LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215.1_LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215_1_26	GCA_001008215_1_26@C0	5643	6113	GCA_001008215_1_26_8	GCA_001008215_1_26_8	-	27689	.	CDD:cd08053	Head-Tail-Connector-Protein	MVDLVIPDDSYVTLDEANRYHAMRESFSVWGELEDDVKLRRLVSASDFLDVNYKFLERKLDSNQPRQFPRTNTGGKDKNGIPTVVKIAVFELALQSDLNQNEEQKMSSVKVGPLSVNYEQSHGLDTKANRFSYVKSLLDSYLDKNTGFGTVQILRG*	hallmark_hmm	common_virus	C0	27690	0	27690	GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote_CDS_0008	cloud	direct	high	470	0.998	GCA_001008215.1_00704
GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote	cenote	CDS	6123	6356	GCA_001008215.1	LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215.1_LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215_1_26	GCA_001008215_1_26@C0	6124	6357	GCA_001008215_1_26_9	GCA_001008215_1_26_9	-	27689	.	PFAM:PF08198.10	Arc-like-repressor	MGGFLLGVFMGLVSFNMMYEEQARFRQQQNQNDSTLDVAKLSTEQIKAKLTEFGVEFDPQTKKPELLALLQETLEQA*	phrogs_hmm	hypothetical_protein	C0	27690	0	27690	GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote_CDS_0009	cloud	direct	high	233	0.996	GCA_001008215.1_00705
GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote	cenote	CDS	6387	7337	GCA_001008215.1	LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215.1_LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215_1_26	GCA_001008215_1_26@C0	6388	7338	GCA_001008215_1_26_10	GCA_001008215_1_26_10	-	27689	.	PDB:4AN5_F	Major-Capsid-protein	MAAVKISDVIVPEIFAPYVINRTVEKSALWQSGIISNIDESSLLAQKGGALINMPFWNDLSGDSEVLSDSGRLTVNNIKAGADVAILHARGKAWGANDLARALAGNDPMNAIAEMAVDYWAREMQKITLATLKGVFGSATMAGNLSDISKASGKEAVIGGDKFIDASFKLGDEVNQLTAVAMHSATAAVLAKQGLIQTIRDADGVVLYQTYMDKRIIVDDSMPVESGVYTTYLFGAGAIGYGEVGAPVPVETDRDSLASEDILINRRHFVLHPRGVKWKGAAGIAPVNTGLATESNWERVYDPKQIRIVAFKHKLA*	hallmark_hmm	common_virus	C0	27690	0	27690	GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote_CDS_0010	cloud	direct	high	950	0.999	GCA_001008215.1_00706
GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote	cenote	CDS	7358	8134	GCA_001008215.1	LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215.1_LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215_1_26	GCA_001008215_1_26@C0	7359	8135	GCA_001008215_1_26_11	GCA_001008215_1_26_11	-	27689	.	PFAM:PF06810.10	minor-structural-protein-	MKLKLDENGNVVVQDGKPVYVYDDGKEVAYDVPAAVAKISSLNAEAKQHREAKEAAEAKLKAFDGIENAEAAKKALEIVKNFDDKKLIDAGEAEKVKAEVVKQYELKLAEKDAEIVKAQDALHSEVIGGAFARSQFILDKMAIPADMVQAYFGKHFTYENGKVIAKDALGNQIFSRKVPGEAADFDEAIEQIVSNYSQKDYILKASGNSGSGSGGGSGEGGFKNPWMKDHWNMTEQGKIFKESPDRARQLAEQAGIKI*	hallmark_hmm	common_virus	C0	27690	0	27690	GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote_CDS_0011	cloud	direct	high	776	0.999	GCA_001008215.1_00707
GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote	cenote	CDS	8396	9439	GCA_001008215.1	LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215.1_LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215_1_26	GCA_001008215_1_26@C0	8397	9440	GCA_001008215_1_26_12	GCA_001008215_1_26_12	-	27689	.	PFAM:PF06152.10	minor-capsid-protein	MTSSANKTPDELLESLLADRKILLFRYDAHLRREIYKKLTALQKQLINKISVVGVDGVNQRELNLLLKEVKELVTETYNHISDYSSDELNSLLPLETVAVHKIYNAAFKFDLFSPVPEYKIKAIKRTVIVAGSPLNDWWAKQGDDVAFKFSGIIRQGMLDGKQTSQLVTETKELLQGSRRWAETLVRTAVMKVHDKAHEVLRDENADIIKGEQHISTLDLRTSDICRARDGKSWNLDKKPIGHNLPYQRPPLHPNCRSTLRLVTKSWRELGLDADDVPESTRASMDGQVKDNLNYEDWLKSKTTEQQDEVLGKGKADLWRKGIITFRDMIDQSGRPLTLKELKELYE*	hallmark_hmm	common_virus	C0	27690	0	27690	GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote_CDS_0012	cloud	direct	high	1043	0.999	GCA_001008215.1_00708
GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote	cenote	CDS	9420	10814	GCA_001008215.1	LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215.1_LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215_1_26	GCA_001008215_1_26@C0	9421	10815	GCA_001008215_1_26_13	GCA_001008215_1_26_13	-	27689	.	PDB:5A20_A	Portal-protein	MNLVSSVSDEMTSLHLKTLIINDLLGGTLSMRAAGKKYLFQMPLEDKGAYENRLNRSTLYPALSETLAQMCGRVFYSPINISNVNEKIVKDILPDVDAEGNALDVFASQWFYSALAYGVSFVLVDYTKTGDAKTKAEEKALGARPYLVHIKPQNVLGIKYERINGNKVMTQFRYKEFVTEEDGEFATKVVEQINVYEIGRVRKYKAQSKGKSDTSFVEIENIEVKANGIPLTFIPIVPFVTKKTGHFALGEPPLMELANLNIKHWQSQSDQDNLLNTARVPLLVRIGVTDDSTVKIGNSIVDLPVGADLRYVEHTGSAIAAGQKSLNELETQMRVAGAKLLEKADMAMTESQARDEQNKEISALRLYANRFEDALDLVLEYVGVWLGIESKAVGNVEISGNIDGNLDPNASMDSVIKLQAAGIISKQTTFEEAKRRGLISDNVNWEDEQARTDGEGLSNDEFSE*	hallmark_hmm	common_virus	C0	27690	0	27690	GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote_CDS_0013	cloud	direct	high	1394	0.999	GCA_001008215.1_00709
GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote	cenote	CDS	10823	12115	GCA_001008215.1	LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215.1_LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215_1_26	GCA_001008215_1_26@C0	10824	12116	GCA_001008215_1_26_14	GCA_001008215_1_26_14	-	27689	.	PDB:5OE8_A	Large-Terminase	MRENEIRMPKLNVPQSQFLAMDKKFRAYVAGFGSGKTWVGCGAIMKHLATYPKVNSGYFAPTFGQIRDIFYPTVEEVAQDWGFSVKINSSNKEVHVYRNKRYRGTIICRSMDNPESIIGFKIGHALCDELDVMPTQKATIAWRKIIARMRYKIDGLRNGVDVTTTPEGFKFVYQQFVKAVREKPELETLYGLIQASTYDNEANLPDDYIDSLRQSYPEQLIEAYLNGQFVNLNSGTIYNNFNRTLNHTDLVMDSSEPLHIGMDFNVMNMSAVTHIVRGGNPYAVDELKGVRDTPEMAKVLSERYSGHSIIIYPDASGANTTSKNASESDISILRKNGFRVEVGARNPYVKDRILSMNGMFCNMDGERRYFVNTKKCPAYTECLEQQAYDQNGNPDKLGGFDHLNDAAGYFINTLYPVVKPISRQTAFRLY*	hallmark_hmm	common_virus	C0	27690	0	27690	GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote_CDS_0014	cloud	direct	moderate	1272	0.984	GCA_001008215.1_00710
GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote	cenote	CDS	12087	12620	GCA_001008215.1	LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215.1_LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215_1_26	GCA_001008215_1_26@C0	12088	12621	GCA_001008215_1_26_15	GCA_001008215_1_26_15	-	27689	.	PFAM:PF06056.11	terminase-small-subunit	MANGKCRIHGGLSTGAPKGNKNSAKPGSIYSKFMTDEELGILDQTELDNLDQEIKVYRIRLYRLLAEEQKQKDELELKVRTTQTPVVGGLPVTAEDGEDEDLIETKQYAKRDYHALINQTTARLQSLIQMRQALTGQKLDIELKQLQLNAANGEDGEQEEQKITIEVVDARKRDKNA*	phrogs_hmm	hypothetical_protein	C0	27690	0	27690	GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote_CDS_0015	cloud	direct	high	533	0.998	GCA_001008215.1_00711
GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote	cenote	CDS	13015	13446	GCA_001008215.1	LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215.1_LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215_1_26	GCA_001008215_1_26@C0	13016	13447	GCA_001008215_1_26_16	GCA_001008215_1_26_16	-	27689	.	.	hypothetical protein	MASIDKKALIEQARIKQQKTKAEIAKKKRQKVKSYVDMPEPTGDVEKDSYADLDAVQKGFRDAIKREDKRFELATDSEYWFCVCFQTREQKEFLLKAMELFEHGDKYLDGQVLAQKLGVKLPDASVPYRTEGKIDKAYLEFVN*	.	hypothetical_protein	C0	27690	0	27690	GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote_CDS_0016	cloud	direct	high	431	0.998	GCA_001008215.1_00714
GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote	cenote	CDS	13433	14134	GCA_001008215.1	LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215.1_LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215_1_26	GCA_001008215_1_26@C0	13434	14135	GCA_001008215_1_26_17	GCA_001008215_1_26_17	-	27689	.	PDB:4BWV_A	PHOSPHOADENOSINE-PHOSPHOSULPHATE-REDUCTAS	MAALSGEQTIDFVANRQKKTLLAFSCGKDAVAAWLAIRDRFDEVIPYYLYLVPHLEFVDESIDYYERFFGVKITQLPHTSVNRMLNNLVFQPPQNCRVIEDAMMPEYDYVNVQQAMCDRFNLPADTLVADGVRAADSPMRRIAINTHGSINFNQLKYHPVWDWKKADLIDCFRKHNVKLAKDYKIFGRSFDGLDLRFLYLIKQHFPRDYQKILELYPLADLEIFRWECANGKH*	common_virus_hmm	common_virus	C0	27690	0	27690	GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote_CDS_0017	cloud	direct	high	701	0.999	GCA_001008215.1_00715
GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote	cenote	CDS	14171	14392	GCA_001008215.1	LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215.1_LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215_1_26	GCA_001008215_1_26@C0	14172	14393	GCA_001008215_1_26_18	GCA_001008215_1_26_18	+	27689	.	PFAM:PF10078.8	transcriptional-regulator	MPYYIEQNSIMQDIFTDLLKKTEITKAQLARELGVSARQVSKWQDNPPQYAIAYLELKYENKRLLSLIKNLNL*	phrogs_hmm	hypothetical_protein	C0	27690	0	27690	GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote_CDS_0018	.	unmatched_CDS	none	0	0	.
GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote	cenote	CDS	14515	14904	GCA_001008215.1	LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215.1_LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215_1_26	GCA_001008215_1_26@C0	14516	14905	GCA_001008215_1_26_19	GCA_001008215_1_26_19	-	27689	.	.	hypothetical protein	MLTIKIIQDGVTSITESNSFVFYDETSREYKEMLRLADKLKEKPTELNGIYYTQPMFADQECKEVIRKESIYCSARNNPTDKIIGVMIDVELDDEYGNQGIEKEIAYSLIGAEDHIYVTNEQGKTVFNI*	.	hypothetical_protein	C0	27690	0	27690	GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote_CDS_0019	cloud	direct	high	389	0.997	GCA_001008215.1_00716
GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote	cenote	CDS	14946	15188	GCA_001008215.1	LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215.1_LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215_1_26	GCA_001008215_1_26@C0	14947	15189	GCA_001008215_1_26_20	GCA_001008215_1_26_20	-	27689	.	PDB:5CYB_A	Lipoprotein	MLTLVCLSLLLTACTNKVTTKAEYIYPPQAYTAPCVKTAFTGETYGDVVIQLVKVTAERDKCASQVDNLNKWINQTKAAN*	common_virus_hmm	common_virus	C0	27690	0	27690	GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote_CDS_0020	cloud	ambiguous	low	49	0.202	GCA_001008215.1_00717
GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote	cenote	CDS	15139	15474	GCA_001008215.1	LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215.1_LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215_1_26	GCA_001008215_1_26@C0	15140	15475	GCA_001008215_1_26_21	GCA_001008215_1_26_21	-	27689	.	pfam10828	Protein of unknown function (DUF2570). This is a family of proteins with unknown function.	MFSRFETALKLTTLCLILGLCGWTWYQSQKISSLKAENQAQAQTIQQQEDANKALTIALQQERDAVIEQQQRNDEIERIATENAESVKTIIKTQPCAHTRLPQSALDRLYK*	mmseqs_cdd	nonviral_gene	C0	27690	0	27690	GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote_CDS_0021	cloud	direct	high	335	0.997	GCA_001008215.1_00717
GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote	cenote	CDS	15447	16001	GCA_001008215.1	LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215.1_LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215_1_26	GCA_001008215_1_26@C0	15448	16002	GCA_001008215_1_26_22	GCA_001008215_1_26_22	-	27689	.	CDD:cd16901	P1-lysozyme	MKLARTRTTLGATGFVCAVSSIITLMYAQFGEELILSPKGAEIIGNAEGCRRDPYKCPADVLTVGIGSTAYSGQPVDPKHRYTDLEIAERWKNDIQVAEKCVLNYGNGRALPQSVFDSAVSITFNVGCGAVRNSTLFKQLRSGNYHQACHEYPKWVYAGGKKLPGLVSRREKEKALCLADLKQP*	common_virus_hmm	common_virus	C0	27690	0	27690	GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote_CDS_0022	cloud	direct	high	554	0.998	GCA_001008215.1_00718
GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote	cenote	CDS	15982	16239	GCA_001008215.1	LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215.1_LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215_1_26	GCA_001008215_1_26@C0	15983	16240	GCA_001008215_1_26_23	GCA_001008215_1_26_23	-	27689	.	PFAM:PF16082.4	holin	MKMFKDPGNQAYVWSGFSSVLAWLGDQNNLMLLSLAIGILTALVNVYSKFVEWRMMKRENERKEEIHKVRMERLKRGLPDEISED*	phrogs_hmm	hypothetical_protein	C0	27690	0	27690	GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote_CDS_0023	cloud	direct	moderate	252	0.977	GCA_001008215.1_00719
GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote	cenote	CDS	16494	17012	GCA_001008215.1	LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215.1_LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215_1_26	GCA_001008215_1_26@C0	16495	17013	GCA_001008215_1_26_24	GCA_001008215_1_26_24	-	27689	.	pfam06530	Phage antitermination protein Q. This family consists of several phage antitermination protein Q and related bacterial sequences. Antiterminator proteins control gene expression by recognising control signals near the promoter and preventing transcriptional termination which would otherwise occur at sites that may be a long way downstream.	MRKFSELPELTIEQEEFVDRYMYQWGAWVRSGRLDKPQLNIIAKLMQSVIPAEPNEPICDDETGFMISQTIEMFFKKNDQILHFIVFAYYVNKRTINFIAEHLHNKAKAKEMRPCSGKSNIRVPSFRTIYREVEKEMHFAKAIIHELLITCFIIQRTSRERAKSIKKIKITY*	mmseqs_cdd	common_virus	C0	27690	0	27690	GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote_CDS_0024	cloud	direct	high	518	0.998	GCA_001008215.1_00721
GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote	cenote	CDS	17013	17558	GCA_001008215.1	LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215.1_LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215_1_26	GCA_001008215_1_26@C0	17014	17559	GCA_001008215_1_26_25	GCA_001008215_1_26_25	-	27689	.	PFAM:PF05766.11	NinG-recombination-protein	MAKEYKCKVCGKPFIKTFSSTQKVCSPECALDLTRQNAQKEREKAEKKKLNERKAKLKSRSEWLKEAQSVFNKFIRLRDKDQPCISCGRYHQGQYHAGHYRSVGACPELRFCELNVHKQCAPCNDHKSGNIIEYRINLVNKIGADKVAWLERQDHDPKKYTIEDCKAIIKHYKVKIKELEE*	common_virus_hmm	common_virus	C0	27690	0	27690	GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote_CDS_0025	shell	direct	high	545	0.998	GCA_001008215.1_00722
GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote	cenote	CDS	17648	18046	GCA_001008215.1	LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215.1_LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215_1_26	GCA_001008215_1_26@C0	17649	18047	GCA_001008215_1_26_26	GCA_001008215_1_26_26	-	27689	.	pfam05772	NinB protein. The ninR region of phage lambda contains two recombination genes, orf (ninB) and rap (ninG), that have roles when the RecF and RecBCD recombination pathways of E. coli, respectively, operate on phage lambda. NinB binds to single-stranded DNA.	MYLVNEAVRNRVIDTIRQLPISESDPLVVEIKVKTRSMEQNDKFHAMLGDISNQALWQGDKYDLYGWKNLLVSGHTIATKLPYKLVTGIEGELVNVREQTSKMGVRRMASLIEYTTAWGVQNGVRFNDRWGF*	mmseqs_cdd	common_virus	C0	27690	0	27690	GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote_CDS_0026	cloud	direct	high	398	0.997	GCA_001008215.1_00724
GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote	cenote	CDS	18057	18641	GCA_001008215.1	LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215.1_LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215_1_26	GCA_001008215_1_26@C0	18058	18642	GCA_001008215_1_26_27	GCA_001008215_1_26_27	-	27689	.	PFAM:PF05869.10	Adenine-specific-DNA-methyltransferase	MTEQKFDKDTWQTPHYVFEWLSQRFGWFDLDGCATANNALTWRYIGEPNSDNDEHQSIADDFLMPIEQMLDVLLDEVAERCSAPLRIYVNPPYSNVTPYLQRAKELRDAGYLVVMLLNNDKSTQWYQNHIQGVANEVIDITGGRIAFINPVTGKEIKGNSKGQMVVVFDPAMEDFVTRSISLDFIKKVGGYDGA*	common_virus_hmm	common_virus	C0	27690	0	27690	GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote_CDS_0027	cloud	direct	high	584	0.998	GCA_001008215.1_00725
GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote	cenote	CDS	18638	19279	GCA_001008215.1	LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215.1_LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215_1_26	GCA_001008215_1_26@C0	18639	19280	GCA_001008215_1_26_28	GCA_001008215_1_26_28	-	27689	.	PFAM:PF06992.10	Replication-protein-P	MKNVIPMEPEKSAVTKSDIPSNAVRLIDRMFVRLKSIFPAWKQAFDSEIEYNETKQVWLEELFKAGVVNPQSLKRGLDLAAKSESPFFPSVGQFITWCSEDYHELGLPNEAELYQRYKTFLGYARFNRDEFQYRSKVEFWLLKNLYEKCKKKSEEDTLKAIPKLLTEAAEKVRSNFPFEDIPKMIPVKPSFYDKAKADKARDSLMAMMKGALQ*	rep_hall_hmm	common_virus	C0	27690	0	27690	GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote_CDS_0028	cloud	direct	high	641	0.998	GCA_001008215.1_00726
GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote	cenote	CDS	19276	20052	GCA_001008215.1	LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215.1_LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215_1_26	GCA_001008215_1_26@C0	19277	20053	GCA_001008215_1_26_29	GCA_001008215_1_26_29	-	27689	.	PFAM:PF04492.12	Replication-protein-O	MNNDSRFIPNSFQVPNAVIDELMSELSGAELKCYLAILRKTKGWNKDFDAVSVTQLMSVTGLSNRAVIDACNHLVELNFLYQKTGSRGVKIFSVNLCNNFTSEKSSLVKKVHGTSEKSSLVTSEKSSHTKNNIKNTTQNTNKKTTQKNSLALLAEFGIVGQLAEDFIAHRKSKRAAITKTVLVGYQREAHKAGIPLAKAITISIERNWQGFKAEWNWRDDNIAMATNTRKTSAFSDDGSWAVGRKLNIDPELIPEELR*	rep_hall_hmm	common_virus	C0	27690	0	27690	GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote_CDS_0029	cloud	direct	high	776	0.999	GCA_001008215.1_00727
GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote	cenote	CDS	20054	20320	GCA_001008215.1	LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215.1_LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215_1_26	GCA_001008215_1_26@C0	20055	20321	GCA_001008215_1_26_30	GCA_001008215_1_26_30	-	27689	.	PF14090.6	Helix-turn-helix domain	MLFTEVICMENINPNEKTSQTQNGKILKALLNGERLTQLDAYTRFNCTRLGARIYDIKNMNEEYKNKLVDRWVVLPSGKRVKEYRLEA*	hhsuite_tools	hypothetical_protein	C0	27690	0	27690	GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote_CDS_0030	cloud	direct	moderate	243	0.91	GCA_001008215.1_00728
GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote	cenote	CDS	20366	20809	GCA_001008215.1	LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215.1_LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215_1_26	GCA_001008215_1_26@C0	20367	20810	GCA_001008215_1_26_31	GCA_001008215_1_26_31	-	27689	.	PFAM:PF06892.10	CII-like-transcriptional-activator	MTMKKVIMEMIEKIPGGKSAVAGFLGFSEAELNNRLYHTKGQRFKNEELIAIQLEYGCTDFIDELCRTAGGRFVPDVAEDELDKVELANLQLHELSARGLLFAVLEKALEDGEITSQEEDKIRQALSKHLSATQHSVELAISLYKPQ*	phrogs_hmm	nonviral_gene	C0	27690	0	27690	GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote_CDS_0031	cloud	direct	high	443	0.998	GCA_001008215.1_00729
GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote	cenote	CDS	20858	21046	GCA_001008215.1	LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215.1_LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215_1_26	GCA_001008215_1_26@C0	20859	21047	GCA_001008215_1_26_32	GCA_001008215_1_26_32	-	27689	.	COG4197	DNA-binding transcriptional regulator YdaS, prophage-encoded, Cro superfamily [Transcription]. 	MLPIEKAYEIVGGISAMARHFNLTPWAVSKWREKVPAERCAKIEELTAGKVKKSELRPDLWD*	mmseqs_cdd	nonviral_gene	C0	27690	0	27690	GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote_CDS_0032	cloud	direct	high	188	0.995	GCA_001008215.1_00730
GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote	cenote	CDS	21157	21840	GCA_001008215.1	LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215.1_LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215_1_26	GCA_001008215_1_26@C0	21158	21841	GCA_001008215_1_26_33	GCA_001008215_1_26_33	+	27689	.	PDB:2FJR_A	Repressor-protein-CI	MTDLASRLNELMARQGINIVDLQKAIGVTYEMARRYTLGTAIPRDDKLCKIAEYLGVPPSYLKYGVIDVTEEIPENRSMEYKNSVVIDVLDIEASAGDGVVNGGMVQMVKQLQFVPEEFHKYYPGITPANIRIINVKGDSMYPTFNNGDLLFVDISIQSFDGDGIYIFSFDNTLFVKRIQKTGRNYCIISDNEALYKPWFITPNDMPEMRIHGKVKIHQSQKLNFVG*	common_virus_hmm	common_virus	C0	27690	0	27690	GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote_CDS_0033	cloud	direct	high	683	0.999	GCA_001008215.1_00731
GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote	cenote	CDS	21904	22335	GCA_001008215.1	LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215.1_LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215_1_26	GCA_001008215_1_26@C0	21905	22336	GCA_001008215_1_26_34	GCA_001008215_1_26_34	+	27689	.	.	hypothetical protein	MKHKYIRKITPDELADFLNAKGASQDTFKCPVCGGFHQTLVDNEAVSDSDGNPIAKEYVTMQPVLPTTIFPDPYEVGELIKQNKIPEKYHYLGDLLGALAASQVITMAVIHLICSNCGHVRTFHKSTIMNWLKEQGRLDRKIA*	.	hypothetical_protein	C0	27690	0	27690	GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote_CDS_0034	cloud	direct	high	431	0.998	GCA_001008215.1_00732
GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote	cenote	CDS	22431	22811	GCA_001008215.1	LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215.1_LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215_1_26	GCA_001008215_1_26@C0	22432	22812	GCA_001008215_1_26_35	GCA_001008215_1_26_35	+	27689	.	PFAM:PF10779.8	hemolysin	MEHYTARVSTLENTVNTISKEVKDIKQNYLTTSAFYRSGILALVVLVGGGWALYSHMDTKYENRFSAIDQRFEKVESNIHSLDIRLTKVESRLDNVELRLTNVEKKLDNIDDKLDILIQQKQANNN*	phrogs_hmm	hypothetical_protein	C0	27690	0	27690	GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote_CDS_0035	cloud	direct	high	380	0.997	GCA_001008215.1_00733
GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote	cenote	CDS	23075	23602	GCA_001008215.1	LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215.1_LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215_1_26	GCA_001008215_1_26@C0	23076	23603	GCA_001008215_1_26_36	GCA_001008215_1_26_36	-	27689	.	PF14163.6	Super-infection exclusion protein B	MEEYVKFANTIITKVTFNYMTALIFFLFCSFYFMPDEWVLFMDNKTPNIFPSWLSLSTLGSISITLILTAIWIVICNVSSSYIEEYKSSKAENRERKKLLKLLPKLTYIEKEVLFGCIIDTPANHSRDIRYTIATEKLLALKLIEVSYVSDGYLINPLILESVISELDKLANSHH*	hhsuite_tools	hypothetical_protein	C0	27690	0	27690	GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote_CDS_0036	cloud	direct	high	527	0.998	GCA_001008215.1_00734
GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote	cenote	CDS	23849	24166	GCA_001008215.1	LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215.1_LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215_1_26	GCA_001008215_1_26@C0	23850	24167	GCA_001008215_1_26_37	GCA_001008215_1_26_37	+	27689	.	.	hypothetical protein	MQLPKVELKQANIPMWIFQNTFASTETQRHVKPLRMIDEVCFEMANIKQTRLKMEEKKENSLSDNDKELIKQAVLESAAKNTNFPPDKLAKSICDAIYLIDSYKH*	.	hypothetical_protein	C0	27690	0	27690	GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote_CDS_0037	cloud	ambiguous	low	158	0.497	GCA_001008215.1_00735
GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote	cenote	CDS	24135	24356	GCA_001008215.1	LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215.1_LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215_1_26	GCA_001008215_1_26@C0	24136	24357	GCA_001008215_1_26_38	GCA_001008215_1_26_38	-	27689	.	.	hypothetical protein	MNKAKADTLALLLARDIAKTSSSSTALPFTYLNRDSAESIADFVEMLSKRFEALDDSVSLPHILNAYKNQSDK*	.	hypothetical_protein	C0	27690	0	27690	GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote_CDS_0038	cloud	direct	high	221	0.995	GCA_001008215.1_00736
GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote	cenote	CDS	24550	24870	GCA_001008215.1	LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215.1_LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215_1_26	GCA_001008215_1_26@C0	24551	24871	GCA_001008215_1_26_39	GCA_001008215_1_26_39	+	27689	.	.	hypothetical protein	MKKHQLKNSFTYFMKGTEKALKIMTCLFGAIIVSAVISLGAKANQTDWHDNELSQQIQAETQCELKSGIYENGVCLPPNLTLAAEKELLTYTAQKQAEINRTWSKQ*	.	hypothetical_protein	C0	27690	0	27690	GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote_CDS_0039	cloud	direct	high	320	0.997	GCA_001008215.1_00737
GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote	cenote	CDS	24867	25082	GCA_001008215.1	LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215.1_LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215_1_26	GCA_001008215_1_26@C0	24868	25083	GCA_001008215_1_26_40	GCA_001008215_1_26_40	+	27689	.	NF033650	ANR family transcriptional regulator. ANR family transcriptional regulators include the AggR-activated regulator Aar. The name ANR (AraC Negative Regulators) refers to an effect on, rather than homology to, certain AraC family transcriptional regulators.	MKLTYKTYAESAVKAEKKGHYLEAAKNWADAKRHTAVQKNIEYCQHRIDFCERHHFRLKSMSQEKNNETLR*	mmseqs_cdd	nonviral_gene	C0	27690	0	27690	GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote_CDS_0040	cloud	direct	high	215	0.995	GCA_001008215.1_00738
GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote	cenote	CDS	25066	25359	GCA_001008215.1	LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215.1_LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215_1_26	GCA_001008215_1_26@C0	25067	25360	GCA_001008215_1_26_41	GCA_001008215_1_26_41	+	27689	.	.	hypothetical protein	MKPSDDYYYQLGAAYQRKVDWQAGYEIALDEVATEIDNDLKQGDQTHYHELTEMLCDNDNFWLAIGSGASYEPYRQEAIKKIAERELNERMNDYDPD*	.	hypothetical_protein	C0	27690	0	27690	GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote_CDS_0041	cloud	direct	high	293	0.997	GCA_001008215.1_00739
GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote	cenote	CDS	25372	26322	GCA_001008215.1	LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215.1_LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215_1_26	GCA_001008215_1_26@C0	25373	26323	GCA_001008215_1_26_42	GCA_001008215_1_26_42	+	27689	.	PFAM:PF03837.13	RecT-protein	MTNQVQYQQNKQPPALKTFFKSANIQNKIKELVGKNAATFATSVMQIANSNAMLKTADPMSIFNAACMAATLNLPLQNGLGFAYIVPFRNNKEKKTEAQFQIGYKGFIQLAQRSGQFKRLVALPVYKKQLIKKDFINGFEFDWEKEPEEGEFPIGYYAYFKLVNDFSAELYMTHEEINAHAKKYSQTYRTYLDKKAKGQWTQSIWAENFEAMALKTVTKLLLSKQAPLSVEMQQAVLADQAVVKDVENQEFNYTDNIQEAEFLAVVDETTFEQCKQSIQKGETTLQELCDSGAYEFSQEQLKKLEELENGNVSTES*	common_virus_hmm	common_virus	C0	27690	0	27690	GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote_CDS_0042	cloud	direct	high	950	0.999	GCA_001008215.1_00740
GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote	cenote	CDS	26297	26947	GCA_001008215.1	LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215.1_LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215_1_26	GCA_001008215_1_26@C0	26298	26948	GCA_001008215_1_26_43	GCA_001008215_1_26_43	+	27689	.	PDB:3SZ4_A	Exonuclease	MEMYQLKARCSGLADLMVKPKSGNGISATAKSAVRKIVKYDLFGYQDFEGNKYTEKGIALEEQAIKLSGRKRGLPLKKNMERRENDWITGECDIYVPSRKLIIDTKCSWDIGSHPFFADEAEEKAKKAGYDAQMQGYMWLWDCDEAQIDFVLLPTPYDQLSSYDDPSRYIDLVEQIPQEKRITTVTIKRDEEIIEKIKERVEIAQKYYQQLIQEMS*	common_virus_hmm	common_virus	C0	27690	0	27690	GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote_CDS_0043	cloud	direct	high	650	0.998	GCA_001008215.1_00741
GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote	cenote	CDS	26947	27387	GCA_001008215.1	LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215.1_LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215_1_26	GCA_001008215_1_26@C0	26948	27388	GCA_001008215_1_26_44	GCA_001008215_1_26_44	+	27689	.	PDB:1Z9F_A	Single-stranded-DNA-binding-protein	MAGVNKVIIVGHLGNDPEMRTMPNGDAVANISVATSESWTDKNSGEKKEVTEWHRIVFYRRQAEICGQYLQKGSQVYVEGRLRTRKWQDNNGQDRYTTEIQGDVLQMLGGRQDEPKSQSKSQSKPKKPDPLSAAAEQDGFNDDIPF*	common_virus_hmm	common_virus	C0	27690	0	27690	GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote_CDS_0044	shell	direct	high	440	0.998	GCA_001008215.1_00742
GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote	cenote	CDS	27450	27686	GCA_001008215.1	LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215.1_LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215_1_26	GCA_001008215_1_26@C0	27451	27687	GCA_001008215_1_26_45	GCA_001008215_1_26_45	+	27689	.	.	hypothetical protein	MAEENKEIIAYKGFNQDWTCRDYQYEIGKTYEHKGDVKACESGFHACEYPLDVLSHYSPAVSKFAVVKMGGETSKDSDD	.	hypothetical_protein	C0	27690	0	27690	GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote_CDS_0045	.	unmatched_CDS	none	0	0	.
GCA_001008215.1|LCTI01000027.1@region_1_10611@tool_cenote	cenote	CDS	1	1115	GCA_001008215.1	LCTI01000027.1	GCA_001008215.1|LCTI01000027.1	GCA_001008215.1_LCTI01000027.1	GCA_001008215.1|LCTI01000027.1	GCA_001008215_1_27	GCA_001008215_1_27@C0	1	1116	GCA_001008215_1_27_1	GCA_001008215_1_27_1	-	10610	.	PDB:1OCY_A	Tail-fiber	MADFNKPTVDSEYTQFPTEIRAAISAALSFLDGEHTNIPLKAKRWNPSSKIFEEYNGTQWVPMATEYKLPVDYNSLKNKPTPNSAVDDESNITFASSAAVKTAYDKGVAAEELANKKWTAKSATETEPGILPISHKTDGADKNKFASEYAVGEAAKKGLPLGAVVSFPRAVTNPVGFLKADGSTFNQQTFPDLYQVLGNSNQLPDLTRSDVGMTAYFAVDNIPSGWIAFDEIATQVTEQRYPELYRHLVSKYGSINSVPKVADRFLRNAGDGLSVGQIQEDELKRHTHKVFSSEPSHRSASIEGLKNDNNLLDAGLVTAIGDSEWSNNGWMTPDVNSNFATGGAETRPKSLILKLCIKAINSFDDVVFWIKS	hallmark_hmm	common_virus	C0	10611	0	10611	GCA_001008215.1|LCTI01000027.1@region_1_10611@tool_cenote_CDS_0001	.	unmatched_CDS	none	0	0	.
GCA_001008215.1|LCTI01000027.1@region_1_10611@tool_cenote	cenote	CDS	1126	4776	GCA_001008215.1	LCTI01000027.1	GCA_001008215.1|LCTI01000027.1	GCA_001008215.1_LCTI01000027.1	GCA_001008215.1|LCTI01000027.1	GCA_001008215_1_27	GCA_001008215_1_27@C0	1127	4777	GCA_001008215_1_27_2	GCA_001008215_1_27_2	-	10610	.	PFAM:PF13550.5	tail-protein	MQIVGRKGGGKGGGGGGRAPVEAPDSLKSCSYAKFIDVISCGEIEGPVNGLNSVYFGDVQLQDEKGKFNFNNVAIEWRPGSVRQAPSEICQTNEVTTDVNTEVKKDKPITRSIIAPEADIVRVTITVPGLSHQNKSNGDINGTKVELKVEYQANGSQWIDAGNIIIEGKTTSSYNREHSFRLTGEAPWNIKVTRLTNDSDSQVLQNKTIFSKITTVFEEKLTYPGVAYVGVQIDAEQFSSIPSRGYHCRGIKLKVPSNYNPETREYSGDWDGTFIVKYSNNPVWIYFDLLTNEEYGAGEYIKEDMLDKWSMYQIAKYCDELVPDGFGGREPRFTCNVYIQTKQEAFKLLRDLTSVFRAMSYWSSGTQMLVQDSPKEPIYQFNNTNVIGGKFSRSGSNIKTRHNVVLVTWNDPKKYFKQSVEYIEDPEAIVKMGYISQTEVVAFGCTSRGQARRLGKWLLYTEQYESEVITFSCGQDGAIPMPGEVIQVSDVHRSGERRGGRVKDGSTTNRIILDAEVEITKESTISIVNEKGELEQRAITQRGKLTEIDVRPVFTSVTENSTWIIASSDIKPELYRVISIVESDDGSYTITASDYNPSKFEHIENGNELIEYDTTNNTLDTGVKNVVITDEIYRGLGGSIQTKIVVSYEPVTSLTSRYQIEYREGNGNWKQMEPTTLTSVDIPNVKDGVLYQIRIKTSNVLGVWSDNPIQNYEPIGRLRPPHNVSNLRHKAIAQEGAFLIWDLSPDIDLEYYEIKKGDTYENSKPVGKIKANEFNLGFIRAGEHKYWLSAVDSSDVRSESPTAVTFNISGGQVENLVAEIVGDEVLMTWDETKNNSFSTELYEVKKDDDVLALVKSTSFKFKADFNGNKKFTVTAIDLGGNRSESAQAQLIVHRPAPVSISQQVIDNYVMLRWQSAKATLPIVYYELRKGETIENSEFITNIDGLAFPQFETVGGLYKYWIIGVDSAGNRSEPQYTLSNVAQPPDYILKYDYNSSYDGIKNGSDKIDGKLYLPVGRDTWTEHFRSNNLATPKSQINRGFPLYLQPTGESGYYEEKMDYGTVLASSKITLTPKVISSGSYDINYHIAVKENAKDNWREHDQQSVYETNFRYVKFRITVSNAQKPVVIESLNLKLDQKQKTDGGTVQANASDIKGTWVNFATEFIDASVPVLTPQSKQPLFATSDFKDEPKPKGFYVFLFDKNGNRVSGKVGWVVKGV*	hallmark_hmm	common_virus	C0	10611	0	10611	GCA_001008215.1|LCTI01000027.1@region_1_10611@tool_cenote_CDS_0002	cloud	direct	high	3650	1.0	GCA_001008215.1_00743
GCA_001008215.1|LCTI01000027.1@region_1_10611@tool_cenote	cenote	CDS	4780	5499	GCA_001008215.1	LCTI01000027.1	GCA_001008215.1|LCTI01000027.1	GCA_001008215.1_LCTI01000027.1	GCA_001008215.1|LCTI01000027.1	GCA_001008215_1_27	GCA_001008215_1_27@C0	4781	5500	GCA_001008215_1_27_3	GCA_001008215_1_27_3	-	10610	.	PFAM:PF06805.11	tail-assembly-protein-I	MDNSTANEQRTSCDIRKIRLKGELGKRFGKVHKLAVKTPAEAIRALCVLKRGFKEFLFESEKHGIVYRFLVQREELTTSSDEFQMRYGAQAEFHLIPVIRGSKRGGFFQLIAGAAMIGLAFWNPLGWATIGGTGFLSGAATLPLTIGASLVLGGISQLLVPVPKVSGPQERPENKPSYLFNGAVNTTEQGQPIPLLYGELIVGSAVVSAGLTDKEIPIRTNSTSNNETRGKLKFKRVSG*	hallmark_hmm	common_virus	C0	10611	0	10611	GCA_001008215.1|LCTI01000027.1@region_1_10611@tool_cenote_CDS_0003	cloud	direct	high	719	0.999	GCA_001008215.1_00744
GCA_001008215.1|LCTI01000027.1@region_1_10611@tool_cenote	cenote	CDS	5438	6145	GCA_001008215.1	LCTI01000027.1	GCA_001008215.1|LCTI01000027.1	GCA_001008215.1_LCTI01000027.1	GCA_001008215.1|LCTI01000027.1	GCA_001008215_1_27	GCA_001008215_1_27@C0	5439	6146	GCA_001008215_1_27_4	GCA_001008215_1_27_4	-	10610	.	cd08073	Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) found in proteins also containing NlpC/P60 domains. This family contains bacterial MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains at the N-terminus of NlpC/P60 phage tail protein domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation.  The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.	MKHIDDAIAHAKQSYPHESCGFFVLKNGKLQYVACTNLAAETEDEFLIGIEDYARAEGVGEIRTVVHSHPDESCLPSIADQDAHKMSGLEWCIIGLEGDEVSTHFMPALTEVPDLYGRKFIHGMTDCYGFVRDWYRQELGINLPNYNRIDGWWDNGGNLYVDNFEDAGFYPVKDLKIGDMIVMQINANVPNHAGVYLGDGLIGHHLYGRLSSKDVYGQFYRERTTHIMRHKENTP*	mmseqs_cdd	common_virus	C0	10611	0	10611	GCA_001008215.1|LCTI01000027.1@region_1_10611@tool_cenote_CDS_0004	cloud	direct	high	707	0.999	GCA_001008215.1_00745
GCA_001008215.1|LCTI01000027.1@region_1_10611@tool_cenote	cenote	CDS	6147	6821	GCA_001008215.1	LCTI01000027.1	GCA_001008215.1|LCTI01000027.1	GCA_001008215.1_LCTI01000027.1	GCA_001008215.1|LCTI01000027.1	GCA_001008215_1_27	GCA_001008215_1_27@C0	6148	6822	GCA_001008215_1_27_5	GCA_001008215_1_27_5	-	10610	.	PFAM:PF05100.11	minor-tail-protein-	MRFFIGVNMSIYGQLQQYASHGWIELFELDLTKFGDIVYRFHDGLSPLGQAIVWQGQEYTPYPVKAEGFAVDGLNPVRPSITFSNLGGAITLVLAKLKGIEGAQLTRKRTKIIYLDAVNFENGNLTADPNAHLPDDIFYISQKTSEDHLTVSFELLPATDLEGVKLPRRQIVAQYCTHKYKGQFCGYTGDKATCAKTLADCKAHFGEHSELPFGGFPSAAYMRI*	hallmark_hmm	common_virus	C0	10611	0	10611	GCA_001008215.1|LCTI01000027.1@region_1_10611@tool_cenote_CDS_0005	cloud	direct	moderate	651	0.964	GCA_001008215.1_00746
GCA_001008215.1|LCTI01000027.1@region_1_10611@tool_cenote	cenote	CDS	6856	7713	GCA_001008215.1	LCTI01000027.1	GCA_001008215.1|LCTI01000027.1	GCA_001008215.1_LCTI01000027.1	GCA_001008215.1|LCTI01000027.1	GCA_001008215_1_27	GCA_001008215_1_27@C0	6857	7714	GCA_001008215_1_27_6	GCA_001008215_1_27_6	-	10610	.	PFAM:PF10547.8	P22_AR-repressor-domain-protein	MANQISTQTISFNNQSLIAVEQNGNHYVAMKPICENIGLAWEPQVLRIKRDEVLSQGMIVMIIPTNGGNQNMICLPIEYLNGWLFGIDINRCKPEIRDTLIKYKKECYQALHDYWFNGKAERKTTVDDRTGLRNAVNMLVSKKGLIYSEAYHLVHQRFNVESIEDLTLEQLPEAVEYVHKIILEGELITEAELPSREKKFSFEFTEFELETLVWLWFGHKQMNTLLGQLEKPLDAIGSNLHPAVYSYWKEYGQQHKDALATMRRLVKPFIESNRITWQRVINHIQ*	common_virus_hmm	common_virus	C0	10611	0	10611	GCA_001008215.1|LCTI01000027.1@region_1_10611@tool_cenote_CDS_0006	cloud	direct	high	857	0.999	GCA_001008215.1_00747
GCA_001008215.1|LCTI01000027.1@region_1_10611@tool_cenote	cenote	CDS	8209	8895	GCA_001008215.1	LCTI01000027.1	GCA_001008215.1|LCTI01000027.1	GCA_001008215.1_LCTI01000027.1	GCA_001008215.1|LCTI01000027.1	GCA_001008215_1_27	GCA_001008215_1_27@C0	8210	8896	GCA_001008215_1_27_7	GCA_001008215_1_27_7	-	10610	.	.	hypothetical protein	MSNKKCNVFTSNFGTLPLRFTLKDGELFVSKSDLTKIFYEFYPSDYRYIVEELMNKGITQIIGDKSDVVSVVIGESKIGAAIHFHAVGNLLHFCSELIDVDDEILRSAAFQISTFTTWYIGTLSKANSYFGINIEDTLMSVKKRLDRINPPYVVEVMYDVEDNIPAWIGTCDKLHLVTEGRTYEELQQRVWEIAPEMHELQGYGSESDNIRLAFIQTESHADFQRLEM*	.	hypothetical_protein	C0	10611	0	10611	GCA_001008215.1|LCTI01000027.1@region_1_10611@tool_cenote_CDS_0007	cloud	direct	high	686	0.999	GCA_001008215.1_00750
GCA_001008215.1|LCTI01000027.1@region_1_10611@tool_cenote	cenote	CDS	9160	9552	GCA_001008215.1	LCTI01000027.1	GCA_001008215.1|LCTI01000027.1	GCA_001008215.1_LCTI01000027.1	GCA_001008215.1|LCTI01000027.1	GCA_001008215_1_27	GCA_001008215_1_27@C0	9161	9553	GCA_001008215_1_27_8	GCA_001008215_1_27_8	-	10610	.	.	hypothetical protein	MWRILMKKLLLIAGLGAILAGCAQLTQEQIKNADYGQYPTNYERIVKEYYETVAKDPDSLKYKEISTPEKSWVNDFGDHKFGYMSCVTVNGKNSYGAYVGYETDGILIKNGKVIHIINNIDQYNRDFCKK*	.	hypothetical_protein	C0	10611	0	10611	GCA_001008215.1|LCTI01000027.1@region_1_10611@tool_cenote_CDS_0008	cloud	direct	moderate	378	0.962	GCA_001008215.1_00751
GCA_001008215.1|LCTI01000027.1@region_1_10611@tool_cenote	cenote	CDS	9632	10609	GCA_001008215.1	LCTI01000027.1	GCA_001008215.1|LCTI01000027.1	GCA_001008215.1_LCTI01000027.1	GCA_001008215.1|LCTI01000027.1	GCA_001008215_1_27	GCA_001008215_1_27@C0	9633	10610	GCA_001008215_1_27_9	GCA_001008215_1_27_9	-	10610	.	TIGR01541	phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage. [Mobile and extrachromosomal element functions, Prophage functions]	NLKRLASEIDSGQQQVAIRDLGDNYKEQIEARQFELTLIGQTSEAVDQLRFNHQLELETAKLRKGMTQENIALLEQMIDKIKRLKEEQAKQTALLKSDPVAGFRDGFQKFQNTAEDVMGNVSQITLNAFNGMSDAVTDFILTGKGDFRGFAQSVIKDITSMIVKMMIFASLKAAFGGTSFGKFIGFDSKYTGGLVGFDEGGFTGQGGKYTPAGIVHKGEYVFTKEAVSRLGVDYLDQLNYQRKAKPQGYANGGSVGGYAPSTPMNANNRGVKVNIINNGEPTNANVETKETSGGLEITVELVQAIARKEAGTIMQQNMRPGGMFA*	mmseqs_cdd	nonviral_gene	C0	10611	0	10611	GCA_001008215.1|LCTI01000027.1@region_1_10611@tool_cenote_CDS_0009	cloud	direct	moderate	873	0.893	GCA_001008215.1_00752
GCA_001008215.1|LCTI01000060.1@region_1_6661@tool_cenote	cenote	CDS	1	1661	GCA_001008215.1	LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215.1_LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215_1_59	GCA_001008215_1_59@C0	1	1662	GCA_001008215_1_59_1	GCA_001008215_1_59_1	-	37489	.	PFAM:PF03906.13	tail-fibre-protein	MSDEKRTWYQRTHQFTPYTKADGTAVSDEFDAIQASFERIPAMRDDGKGFATSPLIPEPSEPNHPVPFKMLTETEASVNNARDDVIQKAQQVASAAQEVAKNTQITATNTQTAQQAATSALSNSQSADESENMARKWASNPENEVVLDEKYSAYHYARKAAQLAVNLASAESSATQSATIATQKAEEATQAAKKAESLAVGEVDYAKVLNVPRSNINTEGVVRLTNDTGLESESLALTAKAGKKLAQLIATVQLALNNYIPLNKRSSAVNSNDENNVATSKAVKTAYDKAIAAEELANTKWAAKSATETEPGILPISHKTDGADKNKFASEYAVGEAAKKGLPLGAVVSFPRAVTNPVGFLKADGSTFNQQTFPDLYRVLGSNKLPDLTRSDVGMTAYFAVDNIPTGWIAFDEIATQVTEQRYPDLYRHLVSKYGSINSVPKVADRFLRNAGDGLSVGQIQEDELKRHTHKVFSSEPSHRSASIEGLKNDNNLLDAGLVTAIDDSEWSNNGWMTPDVNSNFATGGAETRPKSLILKLCIKAINSFDDVVFWIKS	hallmark_hmm	common_virus	C0	6661	0	6661	GCA_001008215.1|LCTI01000060.1@region_1_6661@tool_cenote_CDS_0001	cloud	ambiguous	low	7	0.004	GCA_001008215.1_01723
GCA_001008215.1|LCTI01000060.1@region_1_6661@tool_cenote	cenote	CDS	1654	3639	GCA_001008215.1	LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215.1_LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215_1_59	GCA_001008215_1_59@C0	1655	3640	GCA_001008215_1_59_2	GCA_001008215_1_59_2	-	37489	.	PFAM:PF11134.7	Stabilisation-protein	MSQLPRIQSQFIAISGGMDLTTPPIAKANSEAIIALNVQPNYGGGFSRIEGYECIDGEMIPSEMDYAVLVVDEIPQDKSFLNKTFNHQGKRYQIIDVLAQELVVAALRPLNLANGNVFSVEGTSFTAHYVHSSTEGELEDDLRYRATAFQLGVERVLTVPGENPIRGVLELNNEVIAFRDNGEKCGGFISSSQGWSAIPNTYLVKLKNVVKPENLLNGAEFISASSRGIIHSVTLAPDNLSGYVVLSQSVIENQPLQIKGEIVATIEDCELVKLSKGLSWNFIYHNFYGGADTFYAYGCNGEQIIEVRPNGVIVPILVNSNNPQYICAHRNHLFASFPGGQLGHSLVGRPNQWSVLLGSEQLGLGDEITALSSTVGGVLIIGCRNKIAGLYGSGRDDWVLKEVSSIGIVPETLQTTFVPLAISKNGITRIDQTEQFGDFRLSEVDANRKLGFDKQHYNIAYTSTKPKSNQIRFYSKEGRHICMMLQADGSTRSTFFTYPEILRGVWQSPEQVYLAFDDGKVYRQSDKCYSFSGKPIDWIIKMAFNHCGSPTLIKSWHSSELQATTEGKSKLRYRFDLDYNSNYHASTLSKDLQIAGGGGRWNDSFWNDFLWSAEDYSTPTFYLSGYSRNIALSFSGSSIYSPQFEISGLILNYITRRNYRV*	hallmark_hmm	common_virus	C0	6661	0	6661	GCA_001008215.1|LCTI01000060.1@region_1_6661@tool_cenote_CDS_0002	cloud	direct	high	1985	0.999	GCA_001008215.1_01723
GCA_001008215.1|LCTI01000060.1@region_1_6661@tool_cenote	cenote	CDS	3639	4028	GCA_001008215.1	LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215.1_LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215_1_59	GCA_001008215_1_59@C0	3640	4029	GCA_001008215_1_59_3	GCA_001008215_1_59_3	-	37489	.	.	hypothetical protein	MNYLQLAQRLRREMNDTGEGPHNVTNQTGRNLEYVDAIREAWLDIQSLRPWNKRFWGNGFDGDNIQELEASSDTPFIPKQFHVAIVYYAMQSKALSQNAQELVMRGQNEWDKYLHLLCERFLPTPSLGK*	.	hypothetical_protein	C0	6661	0	6661	GCA_001008215.1|LCTI01000060.1@region_1_6661@tool_cenote_CDS_0003	cloud	direct	high	389	0.997	GCA_001008215.1_01724
GCA_001008215.1|LCTI01000060.1@region_1_6661@tool_cenote	cenote	CDS	4028	4474	GCA_001008215.1	LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215.1_LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215_1_59	GCA_001008215_1_59@C0	4029	4475	GCA_001008215_1_59_4	GCA_001008215_1_59_4	-	37489	.	.	hypothetical protein	MSYPFIDLKKATKEELVAHLREQCGVEKDGKKEELVQAILDFESSSGLVRPDMSTENKSKETHPADLPLPANKRVRIIIAPSETDNSDVYVGLNDLDILIKRGEEVAVPESVYVLLSKAGEHRFEQNKDGTYSEYFAPRYSITVLGDA*	.	hypothetical_protein	C0	6661	0	6661	GCA_001008215.1|LCTI01000060.1@region_1_6661@tool_cenote_CDS_0004	cloud	direct	high	446	0.998	GCA_001008215.1_01725
GCA_001008215.1|LCTI01000060.1@region_1_6661@tool_cenote	cenote	CDS	4526	5521	GCA_001008215.1	LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215.1_LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215_1_59	GCA_001008215_1_59@C0	4527	5522	GCA_001008215_1_59_5	GCA_001008215_1_59_5	-	37489	.	CDD:TIGR04387	Major-Capsid-protein	MATTKSTDISQRTQVYAEAKMLAHAEPVLILTKLGQTKPIPQNKSQVIKFRRPKPFAPALTPLTEGVRPESQKMVYEDVECRLQQFGAWTEITDVIQDTHEDPVLSDMTMLSGEQAAETTELATWGAISGGTNVIFANGSATSQVNTALKLEHVRAAVRKLQRNRAKKKTNILDGSIKYGTKPIEAAYIAVCHTDLEADIRNLPGFTSVAEYGSRQPIVPQEFGTVENVRFITTPLLTPTANAGAAATGKVLSTGGSNADVYKIAIFGQEAYAVCPLKGKDAAQILVRNPGKAEKGDELGQTGSVGWKTWWAGKILNDAWLVRLEVAATAL*	hallmark_hmm	common_virus	C0	6661	0	6661	GCA_001008215.1|LCTI01000060.1@region_1_6661@tool_cenote_CDS_0005	cloud	direct	high	995	0.999	GCA_001008215.1_01726
GCA_001008215.1|LCTI01000060.1@region_1_6661@tool_cenote	cenote	CDS	5546	6400	GCA_001008215.1	LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215.1_LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215_1_59	GCA_001008215_1_59@C0	5547	6401	GCA_001008215_1_59_6	GCA_001008215_1_59_6	-	37489	.	.	hypothetical protein	MENQDTVEFNADAAFDEAANQLESGGLTADNEPSVANDNNQPAPDQRGENPPQESNPQAPEAKEEEPEWLANATDEVKEHFRSMKADKERYEHMAKSHRGRAGAFAKKYQQAQAALEQLKQNQPSFEGELESLRADYPEVAELLSRIIAGQNKRLEDVSAPIAQMVEANVQDFAQQQLDTSISLVTQAVPDADNILRDPMFHRWVDTQPNGVKAMFSSDDPQDAIYLLNEYKRATSSITEQRNKRSQQLSAMSLPTGRSAPKGGDEIDEDALFDQLAAQFAKQR*	.	hypothetical_protein	C0	6661	0	6661	GCA_001008215.1|LCTI01000060.1@region_1_6661@tool_cenote_CDS_0006	cloud	direct	high	854	0.999	GCA_001008215.1_01727
GCA_001008215.1|LCTI01000060.1@region_1_6661@tool_cenote	cenote	CDS	6466	6660	GCA_001008215.1	LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215.1_LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215_1_59	GCA_001008215_1_59@C0	6467	6661	GCA_001008215_1_59_7	GCA_001008215_1_59_7	-	37489	.	.	hypothetical protein	MQKIKLQNEADKKSLIVYLNTRVIEYKQDLCGEGLTPQQYNVLRGRIKELQDLVGELDPTLQAR*	.	hypothetical_protein	C0	6661	0	6661	GCA_001008215.1|LCTI01000060.1@region_1_6661@tool_cenote_CDS_0007	cloud	direct	high	194	0.995	GCA_001008215.1_01728
GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote	cenote	CDS	14889	17084	GCA_001008215.1	LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215.1_LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215_1_59	GCA_001008215_1_59@C2	1	2196	GCA_001008215_1_59_9	GCA_001008215_1_59_9	-	37489	.	PDB:8CK0_A	Portal-Protein	MAEEQSAILEAITAFGSDLKVKLLDHLKQRQPIVQRWVKDMYQYRNQYEESIKTNKSKVFVGYTRAKTDSWTAQMTDMLFPSDDKNYGISPTPMPEIANIAKQPDSDDPNLSNQISNARAIIQQAKESAEAMEKLIDDQLLECDYAAEARLCLHYAAVLGTGILRAPVVDVVESKAWKQDSLGNWVGEIVNKTIPAARLVLPWDFVPDMTAPTLKDCQFVFERSHVTKKQLQALAKNPYYLKESVLELCELDGGDTRTASNDMDGYVDTLRTLSGLETQSKDNRYELWTYHGGIPLNVLSGANELLGEDNKLNIPDDEESRAANLEIEGVIVMAGNGKILSVNLNPLDTAEFPYSVYTCEPDVCCLFGFGIPYLCRDAQEILNTAWRGMIDNGVLGIGPQAVVNSSVLTPVDGNWELAPYKLWKTNDRATASAQFEAQRAFGIFDIGSRQQELANIIQLSKSFMDEESGLPMIAQGEQGQVTPTLGGMSMLMNAANAVRRRQVKEWDDAVTKPLIRRFYEYNMNMSEDTSIKGDMQVVARGTSALLVKETQTAQIIDIFQKFGQHPQLMYAFDWYDGAKTLMQSMSMGTQTMLIPREEYEQKLQEIQEAQAQQPQDPEILKVQMQMQIAQQKQQHEMQLEQMRTQAQLQIEQMKVQIREKELEIKVLEVQMHQESNQARLNLDKELGTAKLTTDIQLQTGKQAADLEKFKTEVALKNAPVVNPTGNYGLDQ*	hallmark_hmm	common_virus	C2	22601	14889	37490	GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote_CDS_0001	cloud	direct	high	2195	1.0	GCA_001008215.1_01730
GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote	cenote	CDS	17087	18634	GCA_001008215.1	LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215.1_LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215_1_59	GCA_001008215_1_59@C2	2199	3746	GCA_001008215_1_59_10	GCA_001008215_1_59_10	-	37489	.	PDB:5OE8_A	Large-Terminase	MKINYRASATFRRVHKTNALVKAIRGPIGSGKSVGCVMEMFRICLNQEPNSDGVRRTRWACVRNTYPELKGTVIKTFQAWIPESICPIKYDSPISGMMKINHPDGKTMVEAEFMFLSMDKPRDVKKLMSLELTGIWINEAQFLPVMLVTEAVTRTGRFPEKRVSEGFDGATWNGMIMDTNSPDDDHWWHTFEMALDEETGESLTPKNWAFFTQPGALIDITGVPLESLSDDVKVNIENGLYVDYHGHRFVANPLAENVENHKKGYGYWFDNLQGQTLSWIKSRICNEFATVQTGKPVYMDHFNKDLHVSKDKLLPIKGWPTFIGLDFGLTPAAIIGQVSPIGQLRITDEVVATGMGIQRFIQDQLSPLIRSKYAGCEVEVIGDPAGVQRAQTDEKTCFQILLENGFNARPADTNNTTGRLEAVRWWLSRLVGKGQPAMIISPHCRVLIKGYETGYAYRQLNISGEEKYTEMPDKNRYSHPHDANQYLCLGAMPDLFKQQIINVKPHQAISSITGY*	hallmark_hmm	common_virus	C2	22601	14889	37490	GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote_CDS_0002	cloud	direct	high	1547	0.999	GCA_001008215.1_01731
GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote	cenote	CDS	18624	19436	GCA_001008215.1	LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215.1_LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215_1_59	GCA_001008215_1_59@C2	3736	4548	GCA_001008215_1_59_11	GCA_001008215_1_59_11	-	37489	.	PFAM:PF07750.10	terminase-small-subunit	MAKKDWNALQIEYIKYYAKTGVSVMEWCRKKGLNFASAKRYIKKPETAFAQMEEIQKGDNREVKAIKKAVKNNANKPAKSEVIESKEDLEENCEINCESANKTAKVEQENYETAKEIAIKVKQSAKMVKHGGYARYFKDKSAFDVVVDFSLKDEIDLMRQRAISSIESIEKFTADLERCKTAEDKEIVHKLIHSAQNALDRAVARIESLNHTNNNIALTLETIELRKAQTKETLLKADKLAQELGAKAASKHKVEYAIDFYDGEEDSDED*	phrogs_hmm	hypothetical_protein	C2	22601	14889	37490	GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote_CDS_0003	cloud	direct	high	812	0.999	GCA_001008215.1_01732
GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote	cenote	CDS	19525	19764	GCA_001008215.1	LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215.1_LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215_1_59	GCA_001008215_1_59@C2	4637	4876	GCA_001008215_1_59_12	GCA_001008215_1_59_12	-	37489	.	PDB:5CYB_A	Lipoprotein	MRIIPLLLLACLTSCASKPQIITYPTIPAAYLAHLDKTSFSGATYGEVAQYAVILKRERDVCLNRIDKIREWQREKMEK*	common_virus_hmm	common_virus	C2	22601	14889	37490	GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote_CDS_0004	cloud	direct	high	239	0.996	GCA_001008215.1_01733
GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote	cenote	CDS	19712	20035	GCA_001008215.1	LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215.1_LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215_1_59	GCA_001008215_1_59@C2	4824	5147	GCA_001008215_1_59_13	GCA_001008215_1_59_13	-	37489	.	PFAM:PF10828.7	Rz-like-spanin	MTKYIYIALGTVVVVLFGVLRYQSGVIEDLEAIKEKQSETIIQQSTKITQLESDIAENQRITIELSKAESEAREEQNAIINSIPNSDKQSNAYNSVAPISLLNFLRK*	phrogs_hmm	hypothetical_protein	C2	22601	14889	37490	GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote_CDS_0005	cloud	direct	high	323	0.997	GCA_001008215.1_01734
GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote	cenote	CDS	20028	20621	GCA_001008215.1	LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215.1_LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215_1_59	GCA_001008215_1_59@C2	5140	5733	GCA_001008215_1_59_14	GCA_001008215_1_59_14	-	37489	.	PDB:3WH1_A	Chitinase-	MISEVTFNKIFPHAVKGVYQAISEQIEKAGCVTKMQQAMFLAQCGHESGGFTRFKENLNYSWSGLSQTFRKYFPDPLTAKKYERKPELIANRVYANRLGNGDEKSGDGWKYRGRGLIQITGKDNYAAFRKWLGRDIEPDDVASNLDLSVKTAIWYWKCCELADLNSVEKVTRRINGGLNGIDERCKLYRALMVTDND*	common_virus_hmm	common_virus	C2	22601	14889	37490	GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote_CDS_0006	cloud	direct	high	593	0.998	GCA_001008215.1_01735
GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote	cenote	CDS	20596	20832	GCA_001008215.1	LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215.1_LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215_1_59	GCA_001008215_1_59@C2	5708	5944	GCA_001008215_1_59_15	GCA_001008215_1_59_15	-	37489	.	TIGR01594	phage holin, lambda family. This model represents one of a large number of mutally dissimilar families of phage holins. Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall. This family includes the product of the S gene of phage lambda. [Mobile and extrachromosomal element functions, Prophage functions]	MRKKPSFRYVFIDAAMCASIAGVAVPICTHIFGHSEYSSFLGTMIGFVGTEKIREFLFKFINRRIEKDDNDDFRSDIQ*	mmseqs_cdd	nonviral_gene	C2	22601	14889	37490	GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote_CDS_0007	cloud	direct	high	236	0.996	GCA_001008215.1_01736
GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote	cenote	CDS	21317	21502	GCA_001008215.1	LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215.1_LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215_1_59	GCA_001008215_1_59@C2	6429	6614	GCA_001008215_1_59_16	GCA_001008215_1_59_16	-	37489	.	.	hypothetical protein	MTKEETLLLAATILSGNSIATNLTSGKELAKRLFDLAECINDEDKKRVLTHSRGYLESKDK*	.	hypothetical_protein	C2	22601	14889	37490	GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote_CDS_0008	cloud	direct	high	185	0.995	GCA_001008215.1_01738
GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote	cenote	CDS	21518	21787	GCA_001008215.1	LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215.1_LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215_1_59	GCA_001008215_1_59@C2	6630	6899	GCA_001008215_1_59_17	GCA_001008215_1_59_17	-	37489	.	.	hypothetical protein	MKKLLLIALVLTSSAAMANYTTCNDLGDIQICRDSSGFSSTTHRIGDTYITNGSGGYSSTTHKIGDDMYMGHDNRGNSWNIYDDIRNNY*	.	hypothetical_protein	C2	22601	14889	37490	GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote_CDS_0009	cloud	direct	high	269	0.996	GCA_001008215.1_01739
GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote	cenote	CDS	21808	21999	GCA_001008215.1	LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215.1_LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215_1_59	GCA_001008215_1_59@C2	6920	7111	GCA_001008215_1_59_18	GCA_001008215_1_59_18	-	37489	.	.	hypothetical protein	MSRDVREALLWAGFIVFLFTFAYGLNKKEESENKTRAMREIESCMVNLHKSYAECKELVYMAD*	.	hypothetical_protein	C2	22601	14889	37490	GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote_CDS_0010	cloud	direct	high	191	0.995	GCA_001008215.1_01740
GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote	cenote	CDS	22158	22805	GCA_001008215.1	LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215.1_LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215_1_59	GCA_001008215_1_59@C2	7270	7917	GCA_001008215_1_59_19	GCA_001008215_1_59_19	+	37489	.	PFAM:PF12898.6	Lar-like-restriction-alleviation-protein	MDEFSILSIGIGIACIFFAILFWLVDRENHKEAPTSMIDEIIDKNNLEIKAKLLNKIQEYEHCIKQKDNYIRKKETEYYDLEKKLDKASFDLFMSYDEINDLKIQVLNLTNLNQSLQKQLLSFETSSIQISVKKCPACRRVQPLSEFGKNEHQPDGLTKWCSLCMSEGAPMPHDMSGMKICEKCGQNRKKSSFYPSSRYSDGLSKWCKFCLDNKK*	phrogs_hmm	hypothetical_protein	C2	22601	14889	37490	GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote_CDS_0011	cloud	direct	high	647	0.998	GCA_001008215.1_01741
GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote	cenote	CDS	22879	23604	GCA_001008215.1	LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215.1_LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215_1_59	GCA_001008215_1_59@C2	7991	8716	GCA_001008215_1_59_20	GCA_001008215_1_59_20	-	37489	.	TIGR02642	uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q. [Mobile and extrachromosomal element functions, Prophage functions]	MSKSIELLVKLHNPKCVSVETVGRGGAALLYQDQIICAFAKAESEYMFGYHLLMCKYRQDPFSREFVNSYIESWCEDRGFPEHSSEAMKCVVDMVCDLPLPSQIKHIKALRKRYLRSQYAYLPTIEKVNKIAEENGFLINGAEARQLRIREINELRKSNTCPRCRGTGVVGRVQKRECPECRGKGQLRANIYHLIKSIDCTEAYFKRYLNALVVDFEQHCYEEMSGAERVIKQRLNKEISD*	mmseqs_cdd	nonviral_gene	C2	22601	14889	37490	GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote_CDS_0012	cloud	direct	high	725	0.999	GCA_001008215.1_01742
GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote	cenote	CDS	23597	23962	GCA_001008215.1	LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215.1_LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215_1_59	GCA_001008215_1_59@C2	8709	9074	GCA_001008215_1_59_21	GCA_001008215_1_59_21	-	37489	.	PFAM:PF05866.10	Endodeoxyribonuclease-Rus	MSDWLEIALPYPPSVNHYWRHTRSGRHYISEAGRKFKAEALQILQQFDPFIGAVAVHLEVYYPDNRNRDPDNINKGLFDSLVASGLIQDDNNKVIKDFRSKNCGIKKGGMVVVKIRGLENE*	common_virus_hmm	common_virus	C2	22601	14889	37490	GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote_CDS_0013	cloud	direct	high	365	0.997	GCA_001008215.1_01743
GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote	cenote	CDS	23959	24243	GCA_001008215.1	LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215.1_LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215_1_59	GCA_001008215_1_59@C2	9071	9355	GCA_001008215_1_59_22	GCA_001008215_1_59_22	-	37489	.	pfam07102	Protein of unknown function (DUF1364). This family consists of several bacterial and phage proteins of around 95 residues in length. The function of this family is unknown.	MSNLRKEAKGRECQVRLPGICNHNPETTVLAHYRMAGLNGVGMKPDDIFGAWACSSCHDECDRRTRKMDAEYVRLAHAEGVLRTQQILRKEGKL*	mmseqs_cdd	common_virus	C2	22601	14889	37490	GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote_CDS_0014	cloud	direct	high	284	0.996	GCA_001008215.1_01744
GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote	cenote	CDS	24531	25040	GCA_001008215.1	LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215.1_LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215_1_59	GCA_001008215_1_59@C2	9643	10152	GCA_001008215_1_59_23	GCA_001008215_1_59_23	-	37489	.	pfam07105	Protein of unknown function (DUF1367). This family consists of several highly conserved, hypothetical phage proteins of around 200 residues in length. The function of this family is unknown. Some proteins are annotated as IrsA (intracellular response to stress).	MACSVDDIKKAHGKRTEGRLKIQVIKLQGGVLAPLDELESEELKSLKNGEQYEIEIIRTRNPAFHRKVFAFFKFCFNHWAADKTEWEHFDERKQFDTFRKHLTVLAGFYESTYNIKGDLRIEAQSLSYGNMEQAEFESCYKALISAAIKHIFNDSTDENTLNQLYEFFW*	mmseqs_cdd	nonviral_gene	C2	22601	14889	37490	GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote_CDS_0015	cloud	direct	high	509	0.998	GCA_001008215.1_01746
GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote	cenote	CDS	25045	25584	GCA_001008215.1	LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215.1_LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215_1_59	GCA_001008215_1_59@C2	10157	10696	GCA_001008215_1_59_24	GCA_001008215_1_59_24	-	37489	.	PFAM:PF05869.10	Adenine-specific-DNA-methyltransferase	MTEQQFDKDTWQTPKYVFNWLEIKCGSFDVDGCASSENALCKEYIDSDFDFLTCSMRGFQNCCEKENLKIYVNPPYSDVTPFLIRAKELRDAGHLVVMLLNNDKSTQWYQNHIHNVANEVIDITGGRIAFINPVTGKEIKGNSKGQMVVVFDPTMEDFVTRSISLDFIKKVGGYIHVEK*	common_virus_hmm	common_virus	C2	22601	14889	37490	GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote_CDS_0016	cloud	direct	high	539	0.998	GCA_001008215.1_01747
GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote	cenote	CDS	25581	26954	GCA_001008215.1	LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215.1_LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215_1_59	GCA_001008215_1_59@C2	10693	12066	GCA_001008215_1_59_25	GCA_001008215_1_59_25	-	37489	.	PDB:3BGW_F	DNAB-Like-Replicative-Helicase	MTSKIYDLEYSLVGAFLNSGLSPQAREVMSWLEPEMFATFQLGALYGNIRKQARKDDLIDILLLAQDYGENFANLAELASGYAYSGNILGYAKKVHSAWVNRTAQQALLKMAGELANAKDEQVNQITQNALNQIQKLLVSKTEIKPIAMGELVDSYVDVLEKRSKSDFKERLLYTGIEAVDNILGGINSTDIVIVAGRPGTGKTEFSLTVTRNIAKNHGSVLFFSLEMGNFQLVDRLLSATGGVSVKKLRNPAELDEGDYHRLTSALQEVRSQDVYFVDRGGLSADEICAITENHISEKGAPSVVVIDYLGLMDHKQERGVNLTQAIANSMSKLKAFTKNFNIPIILLCQLNRDVDSRAVKRPANSDLRDSGSIEQDASQIIMLYREGAYKADCDNPYSEAIVTKNRFGGLGTAYMKFDKGHFLDCDQAQAYQFINEKPQQQAKTYAAKSYGKGVIQ*	rep_hall_hmm	common_virus	C2	22601	14889	37490	GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote_CDS_0017	cloud	direct	high	1373	0.999	GCA_001008215.1_01748
GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote	cenote	CDS	26951	27874	GCA_001008215.1	LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215.1_LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215_1_59	GCA_001008215_1_59@C2	12063	12986	GCA_001008215_1_59_26	GCA_001008215_1_59_26	-	37489	.	PFAM:PF04492.12	Replication-protein-O	MGNVVRIEDWRELREKQEESKPEKQGVKKVSVDDGFTAIPNELLKAILRSKVLGWKGSYLLATILKTLSWRKESDWFTHSQVCEMMETAPTKYHINQLSAARKELIKERILFEDGKKTGVNLSIFSWEMLNPEKVGSSRNNRELVPEKVGSGYPEKVGNTKETITKEKIKDNPLPPKGESADADLADKSRSGKKQKSIKVNYSKVAELYNDLVKESNSNLPLIANPAQLSVKRQKAIKKLAEVFIDRFKLDNETDGLVEQAIGEYFKDFLQSARGFYFGENDRGWRANFEYLLREETLDKTLENNLL*	rep_hall_hmm	common_virus	C2	22601	14889	37490	GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote_CDS_0018	cloud	direct	high	923	0.999	GCA_001008215.1_01749
GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote	cenote	CDS	27852	28034	GCA_001008215.1	LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215.1_LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215_1_59	GCA_001008215_1_59@C2	12964	13146	GCA_001008215_1_59_27	GCA_001008215_1_59_27	-	37489	.	.	hypothetical protein	MDKTNIKDGINCTSSSPLWQAFEYRKRLKKLIEQGASINELDKHAKLLFKEMKDGKCRQN*	.	hypothetical_protein	C2	22601	14889	37490	GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote_CDS_0019	cloud	direct	high	182	0.995	GCA_001008215.1_01750
GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote	cenote	CDS	28078	28518	GCA_001008215.1	LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215.1_LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215_1_59	GCA_001008215_1_59@C2	13190	13630	GCA_001008215_1_59_28	GCA_001008215_1_59_28	-	37489	.	PFAM:PF06892.10	CII-like-transcriptional-activator	MEMKKVIIEMIDRIPGGRSAVAGFLGFTESELKNRLYQIKGQRFKNEELIALQLEYGCTDFIDELCRNAGGRFVPDVAEDELDKVELAKLQLRELSARGLLFAALETALEDGEITSQEEDKIRQALSKHLAATQHSIECAIVLHKK*	phrogs_hmm	nonviral_gene	C2	22601	14889	37490	GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote_CDS_0020	cloud	direct	high	440	0.998	GCA_001008215.1_01751
GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote	cenote	CDS	28567	28779	GCA_001008215.1	LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215.1_LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215_1_59	GCA_001008215_1_59@C2	13679	13891	GCA_001008215_1_59_29	GCA_001008215_1_59_29	-	37489	.	COG4197	DNA-binding transcriptional regulator YdaS, prophage-encoded, Cro superfamily [Transcription]. 	MKNEVIEKAISICGSQVKLSQECGVSQVSVSFWLNGGGINAKYIPRIVKATKGKVTEKQILHSLANLTDN*	mmseqs_cdd	nonviral_gene	C2	22601	14889	37490	GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote_CDS_0021	cloud	direct	high	212	0.995	GCA_001008215.1_01752
GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote	cenote	CDS	28898	29593	GCA_001008215.1	LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215.1_LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215_1_59	GCA_001008215_1_59@C2	14010	14705	GCA_001008215_1_59_30	GCA_001008215_1_59_30	+	37489	.	PDB:2FJR_A	Repressor-protein-CI	MNTLAERLQLVMDKMGKNQVELAALAGTSQVTISNILNGVTKSPRNGLQIAKALKISPEWLLNGTGEMAQTQIESNVAETGSFDLWDRSTPLNDDEVEVPFYKDIRLAAGNGFADDIADYNNFKLRFSKSTLRKQGVQYENAVCVIADGNSMEPVIPDGTTVGIDLGNKTIRDGKIYAINHGGLLRIKLLYNMPNNQIKIRSYNTDEYDDEIADLNEVSVIGKVFWYSVLL*	common_virus_hmm	common_virus	C2	22601	14889	37490	GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote_CDS_0022	cloud	direct	high	695	0.999	GCA_001008215.1_01753
GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote	cenote	CDS	29645	30442	GCA_001008215.1	LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215.1_LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215_1_59	GCA_001008215_1_59@C2	14757	15554	GCA_001008215_1_59_31	GCA_001008215_1_59_31	+	37489	.	3AKK_A	CtkA (E.C.2.7.11.1)	MNKVKKATLLSIHQEIYEENVNPTHKAVVLTEDGEEVILYCKELAPRELFVECAIALIGRDLGISIPKPYIVLATPESNYPNIEHPISEPILLFGSESIDYPNLFRKLEEGIDKSFILPALSQCDDDYGIVLFDEWIANTDRHLGNILFDGGDKFFFIDHDCAVPSHCQCKATIGKNRLLDFLIPNFPTEEKKQQYLDNCMLKHAPKCANYTLNDISERTFAQTYLNEEEINYLENFLQKRVIYISNLLHQRLNIKQKELFGAIH*	hhsuite_tools	hypothetical_protein	C2	22601	14889	37490	GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote_CDS_0023	cloud	direct	high	797	0.999	GCA_001008215.1_01754
GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote	cenote	CDS	30442	31302	GCA_001008215.1	LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215.1_LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215_1_59	GCA_001008215_1_59@C2	15554	16414	GCA_001008215_1_59_32	GCA_001008215_1_59_32	+	37489	.	.	hypothetical protein	MFTQFPQTPNFKGEWRAIQLEPIIGSGERITVAISVLGQNGEHKAIQAIRPELLECLYGNKSKEMMKLIQLIIQSISNQSDNLQEWKPPFEGLILSKAHHTSSKDIYGILRQAIQLSSSLSKLSLAAEHHEENISEQVKKAELRWSTSIENEVITKNNNLRTFFNVYKKLGNSQIKTRFNFLTDNYASNFAVFNPHSASQSTTVIKSKLIDLERLEKAQGLFNIEKRELILGLPDFKNDVSLSDKAIKNAENYLIMYEEIALSQEIEIFKTSTPTLAAKRLMSQAV*	.	hypothetical_protein	C2	22601	14889	37490	GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote_CDS_0024	cloud	direct	high	860	0.999	GCA_001008215.1_01755
GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote	cenote	CDS	31962	32159	GCA_001008215.1	LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215.1_LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215_1_59	GCA_001008215_1_59@C2	17074	17271	GCA_001008215_1_59_33	GCA_001008215_1_59_33	+	37489	.	.	hypothetical protein	MNTIIIAFFTALLVSLAVHYLTIIQVGKWFDEFFDKETQKMENFAKELSEIIQKGKSCRNSDLER*	.	hypothetical_protein	C2	22601	14889	37490	GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote_CDS_0025	cloud	direct	high	197	0.995	GCA_001008215.1_01756
GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote	cenote	CDS	32113	33009	GCA_001008215.1	LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215.1_LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215_1_59	GCA_001008215_1_59@C2	17225	18121	GCA_001008215_1_59_34	GCA_001008215_1_59_34	-	37489	.	PF14337.6	Domain of unknown function (DUF4393)	MSEPISTAVTGVAVAAGKEIAANASKGIGQTVSDMWYAIYGYKWSENRQKKEIEVAYNIEKFKEEITNKAAKIPEENKQEPDIDIIGATLDSARFRVNKQEIRDMFSNLIVSAMDNSKSADIHPSFSEMIKMLSPLDAKNLQTLYQSGDETISKIRMTSDGGFIDVCSHIYLGNSEVQDNELIAPSIDNLIRLKLIDVDYETFKNNDALYEKHRNNPLLLQYKQEYQEKRQANQEILNFLNSVGNRTNGDNIPIPEEVKASIKQHLEDALKPRTIDIVKGKISLTALGRNFCKICLSE*	hhsuite_tools	nonviral_gene	C2	22601	14889	37490	GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote_CDS_0026	cloud	direct	high	896	0.999	GCA_001008215.1_01757
GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote	cenote	CDS	33349	34020	GCA_001008215.1	LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215.1_LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215_1_59	GCA_001008215_1_59@C2	18461	19132	GCA_001008215_1_59_35	GCA_001008215_1_59_35	+	37489	.	pfam10548	P22AR C-terminal domain. This domain was identified by Iyer and colleagues. It is found associated with pfam10547.	MSNLTILNNSIRSYGNLYSLNDLHQASGGLDKHSPFRFMRNESTQELISEMKNEMNTKSGVQKEAQGSDLIFKTLRGRNIQGTWVCEELVLSYAMWISPKFHLIVLRAFLAMHRNQPQQLSLPEPKKFTFEFTEYELQQLAWLWFAFKRGVGTFQHIERAFNVLGSNMSGQIYGQAYEYLSVLRSTNQILNRITSDFDIDPMTNWRVLKHLRGFNPKAVKIDF*	mmseqs_cdd	common_virus	C2	22601	14889	37490	GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote_CDS_0027	cloud	direct	high	671	0.999	GCA_001008215.1_01759
GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote	cenote	CDS	34117	34416	GCA_001008215.1	LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215.1_LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215_1_59	GCA_001008215_1_59@C2	19229	19528	GCA_001008215_1_59_36	GCA_001008215_1_59_36	+	37489	.	.	hypothetical protein	MQKFTDVFAETIPFLCKTAIAFALAFLIGGIAYCFANGPTDWHDNTLSEQIQQEERAKAKAQWREENGIYQANLTPQVNADMYRYVEQKQAEINRTWSK*	.	hypothetical_protein	C2	22601	14889	37490	GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote_CDS_0028	cloud	direct	high	299	0.997	GCA_001008215.1_01760
GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote	cenote	CDS	34416	34910	GCA_001008215.1	LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215.1_LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215_1_59	GCA_001008215_1_59@C2	19528	20022	GCA_001008215_1_59_37	GCA_001008215_1_59_37	+	37489	.	.	hypothetical protein	MKVESYKTQIIRTETGKYFGELWVNNKLYQKTAYFANEAIAILRLNKRIENFNAMENTKIPPYQKDAETNQFPAAPKESAVEKESVSTKPQAPKTEVKAKSTKPRRKPFTPYGLNGYFVDKQGNIRLHLDRKAHAHTIVLNPEMFSMLANMVQATQEQNNETFR*	.	hypothetical_protein	C2	22601	14889	37490	GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote_CDS_0029	cloud	direct	high	494	0.998	GCA_001008215.1_01761
GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote	cenote	CDS	34894	35187	GCA_001008215.1	LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215.1_LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215_1_59	GCA_001008215_1_59@C2	20006	20299	GCA_001008215_1_59_38	GCA_001008215_1_59_38	+	37489	.	.	hypothetical protein	MKPSDDYYYQLDAAHQRKVDWQAGYEIALDEVATEIDNDLKQGDQTHYHELTEMLCDNDNFWLAIGSGASYEPYRQEAIKKIAERELHARMNDYDPD*	.	hypothetical_protein	C2	22601	14889	37490	GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote_CDS_0030	cloud	direct	high	293	0.997	GCA_001008215.1_01762
GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote	cenote	CDS	35200	36120	GCA_001008215.1	LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215.1_LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215_1_59	GCA_001008215_1_59@C2	20312	21232	GCA_001008215_1_59_39	GCA_001008215_1_59_39	+	37489	.	PFAM:PF03837.13	RecT-protein	MTNQVQHQQNKQPPALKTFFESANVQNKIKELVGKNAATFATSVMQIANSNSMLKTADPMSIFNAACMAATLNLPLQNGLGFAYIVPFRNNKEKKTEAQFQIGYKGFIQLAQRSGQFKRLVALPVYKKQLIKKDFINGFEFDWEQEPEQNENPIGYYAYFKLVNDFSAELYMSHDDIVKHAQRYSQTFKKGYGVWHDNFEAMALKTVTKLLLSKQAPLSVEMQQAVLADQAVVKDVENQEFNYTDNIQEAEFLAVVDEATFEQCKQSITNGETTLQELCDSGAYEFSQKQIEELEAIENGNVQAES*	common_virus_hmm	common_virus	C2	22601	14889	37490	GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote_CDS_0031	cloud	direct	high	920	0.999	GCA_001008215.1_01763
GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote	cenote	CDS	36095	36745	GCA_001008215.1	LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215.1_LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215_1_59	GCA_001008215_1_59@C2	21207	21857	GCA_001008215_1_59_40	GCA_001008215_1_59_40	+	37489	.	PDB:3SZ4_A	Exonuclease	MEMYKLKARCSGLADLMAKPKSGNGISATAKSAVRKIVKYDLFGYQDFEGNKYTEKGIALEEQAIKLSGRKRGLPLKKNTERRENDWITGECDIYVPSRRLIIDTKCSWDIGSHPFFADEAEEKAKKAGYDAQMQGYMWLWDCDEAQIDFVLLPTPYDQLSSYDDPNRYIDLVEQIPQEKRITTVTIKRDEKVIEKIKERVEIAQEYYQQLIQEMS*	common_virus_hmm	common_virus	C2	22601	14889	37490	GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote_CDS_0032	cloud	direct	high	650	0.998	GCA_001008215.1_01764
GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote	cenote	CDS	36745	37188	GCA_001008215.1	LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215.1_LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215_1_59	GCA_001008215_1_59@C2	21857	22300	GCA_001008215_1_59_41	GCA_001008215_1_59_41	+	37489	.	PDB:1Z9F_A	Single-stranded-DNA-binding-protein	MAGVNKVIIVGHLGNDPEMRTMPNGEQVANISVATSESWTDKNSGEKKTQTEWHRIVFYRRQAEICGQYLQKGSQVYIEGRLKTRKWQDNNGQDRYTTEIQGDVLQMLGSRQDEQSQQNKPQAQAKPKKLDPLSAAAEQDGFNDIPF*	common_virus_hmm	common_virus	C2	22601	14889	37490	GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote_CDS_0033	shell	direct	high	443	0.998	GCA_001008215.1_01765
GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote	cenote	CDS	37250	37486	GCA_001008215.1	LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215.1_LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215_1_59	GCA_001008215_1_59@C2	22362	22598	GCA_001008215_1_59_42	GCA_001008215_1_59_42	+	37489	.	.	hypothetical protein	MAEENKEIIAYKGFNQDWTCRGYQYEVGKTYVHKGDVKAYGSGFHACEYPLDVLSYYSPAVSKFAVVKMSGETSKDSDD	.	hypothetical_protein	C2	22601	14889	37490	GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote_CDS_0034	.	unmatched_CDS	none	0	0	.
GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote	cenote	tRNA	16300	16372	GCA_001008215.1	LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215.1_LCTI01000026.1	GCA_001008215.1|LCTI01000026.1	GCA_001008215_1_26	GCA_001008215_1_26@C0	16301	16373	tRNA-Asn	tRNA-Asn	-	27689	.	tRNAscan-SE score: 67.2	Asn	NA	tRNAscan-SE	.	C0	27690	0	27690	GCA_001008215.1|LCTI01000026.1@region_1_27690@tool_cenote_tRNA_0001	.	.	.	.	.	.
GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote	cenote	tRNA	21023	21093	GCA_001008215.1	LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215.1_LCTI01000060.1	GCA_001008215.1|LCTI01000060.1	GCA_001008215_1_59	GCA_001008215_1_59@C2	6135	6205	tRNA-Trp	tRNA-Trp	-	37489	.	tRNAscan-SE score: 56.6	Trp	NA	tRNAscan-SE	.	C2	22601	14889	37490	GCA_001008215.1|LCTI01000060.1@region_14890_37490@tool_cenote_tRNA_0001	.	.	.	.	.	.