core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_001008225.1|LCTJ01000023.1@region_55621_74343@tool_cenote	cenote	CDS	55620	55949	GCA_001008225.1	LCTJ01000023.1	GCA_001008225.1|LCTJ01000023.1	GCA_001008225.1_LCTJ01000023.1	GCA_001008225.1|LCTJ01000023.1	GCA_001008225_1_21	GCA_001008225_1_21@C4	1	330	GCA_001008225_1_21_56	GCA_001008225_1_21_56	+	74342	.	TIGR00103	DNA-binding protein, YbaB/EbfC family. The function of this protein is unknown, but it has been expressed and crystallized. Its gene nearly always occurs next to recR and/or dnaX. It is restricted to Bacteria and the plant Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A member is present even in the minimal gene complement of Mycoplasm genitalium. [Unknown function, General]	MFGKGGLGGLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKITINGAHNCRRIDIDPSLMEDDKEMLEDLIAAAFNDAVRRAEELQKEKMASVTAGMPLPPGMKFPF*	mmseqs_cdd	nonviral_gene	C4	18723	55620	74343	GCA_001008225.1|LCTJ01000023.1@region_55621_74343@tool_cenote_CDS_0001	persistent	direct	high	329	0.997	GCA_001008225.1_00696
GCA_001008225.1|LCTJ01000023.1@region_55621_74343@tool_cenote	cenote	CDS	56012	56614	GCA_001008225.1	LCTJ01000023.1	GCA_001008225.1|LCTJ01000023.1	GCA_001008225.1_LCTJ01000023.1	GCA_001008225.1|LCTJ01000023.1	GCA_001008225_1_21	GCA_001008225_1_21@C4	393	995	GCA_001008225_1_21_57	GCA_001008225_1_21_57	+	74342	.	COG0353	Recombinational DNA repair protein RecR [Replication, recombination and repair]. 	MQSSPLLEHLIENLRCLPGVGPKSAQRMAYHLLQRNRSGGMNLARALTEAMSKIGHCSQCRDFTEEDTCNICNNPRRQNSGLLCVVEMPADIQAIEQTGQFSGRYFVLMGHLSPLDGIGPREIGLDLLQKRLVEESFHEVILATNPTVEGDATANYIAEMCRQHNIKVSRIAHGIPVGGELETVDGTTLTHSFLGRRQID*	mmseqs_cdd	nonviral_gene	C4	18723	55620	74343	GCA_001008225.1|LCTJ01000023.1@region_55621_74343@tool_cenote_CDS_0002	persistent	direct	high	602	0.998	GCA_001008225.1_00697
GCA_001008225.1|LCTJ01000023.1@region_55621_74343@tool_cenote	cenote	CDS	56630	58585	GCA_001008225.1	LCTJ01000023.1	GCA_001008225.1|LCTJ01000023.1	GCA_001008225.1_LCTJ01000023.1	GCA_001008225.1|LCTJ01000023.1	GCA_001008225_1_21	GCA_001008225_1_21@C4	1011	2966	GCA_001008225_1_21_58	GCA_001008225_1_21_58	+	74342	.	PDB:5D5H_A	DNA-topoisomerase-1	MRLFIAEKPSLARAIADVLPKPHQRGDGFIKCGDNDVVTWCVGHLLEQAEPDAYDPKFKQWRLEHLPIIPEKWQLLPRKEVKKQLSVVEKLIHQADTLVNAGDPDREGQLLVDEVFSYANLPAEKRDNILRCLISDLNPSAVEKAVKKLQPNRNFIPLATSALARARADWLYGINMTRAYTIRGRQTGYDGVLSVGRVQTPVLGLIVRRDLEIEHFQPKDFFEVLAWINPENTEEETQEKSTALFSALWQPSKACEDYQDDDGRVLSKGLAENVVKRITNQPAEVTEYKDVREKETAPLPYSLSALQIDAAKRFGMSAQAVLDTCQRLYETHRLITYPRSDCRYLPEEHFTERHNVLNAISTHCEAYQRLPNVISTEQRNRCWNDKKVEAHHAIIPTAKNRPVNLTQEERNIYSLIARQYLMQFCPDTEYRKSKITLNIAGGTFIAQARNLQTAGWKELLGKEDDTENQEPLLPIVKKGQILHCERGEVMSKKTQPPKPFTDATLLSAMTGIARFVQDKELKKILRETDGLGTEATRAGIIELLFKRGFLTKKGRNIHSTETGRILIQALPDIATQPDMTAHWESQLTDISQKQATYQQFMHNLNQMLPDLVRFVDLNALRQLSRIKMIKSNRTKPKSAVKKLSKSNGQTD*	common_virus_hmm	common_virus	C4	18723	55620	74343	GCA_001008225.1|LCTJ01000023.1@region_55621_74343@tool_cenote_CDS_0003	persistent	direct	high	1955	0.999	GCA_001008225.1_00698
GCA_001008225.1|LCTJ01000023.1@region_55621_74343@tool_cenote	cenote	CDS	58694	59035	GCA_001008225.1	LCTJ01000023.1	GCA_001008225.1|LCTJ01000023.1	GCA_001008225.1_LCTJ01000023.1	GCA_001008225.1|LCTJ01000023.1	GCA_001008225_1_21	GCA_001008225_1_21@C4	3075	3416	GCA_001008225_1_21_59	GCA_001008225_1_21_59	+	74342	.	COG1314	Preprotein translocase subunit SecG [Intracellular trafficking, secretion, and vesicular transport]. 	MYQVLLFIYVVVAIALIGFILVQQGKGANAGASFGGGASGTMFGSAGAGNFLTRTSAILATAFFVIALVLGNMNSHKGNIQKGAFDDLSQAAEQVQQQQAAPAKENKNSDIPQ*	mmseqs_cdd	nonviral_gene	C4	18723	55620	74343	GCA_001008225.1|LCTJ01000023.1@region_55621_74343@tool_cenote_CDS_0004	persistent	direct	high	341	0.997	GCA_001008225.1_00699
GCA_001008225.1|LCTJ01000023.1@region_55621_74343@tool_cenote	cenote	CDS	59334	60560	GCA_001008225.1	LCTJ01000023.1	GCA_001008225.1|LCTJ01000023.1	GCA_001008225.1_LCTJ01000023.1	GCA_001008225.1|LCTJ01000023.1	GCA_001008225_1_21	GCA_001008225_1_21@C4	3715	4941	GCA_001008225_1_21_60	GCA_001008225_1_21_60	+	74342	.	PDB:1Z19_B	Integrase	MARIVKPLSPTEIKNAKPKEKEYTLSDGEGLLLLILPSGSKSWRFNYARPVTGKRTKMALGGYPELSLADARAKREEYRALLAKGIDPQEEKIRIQQEYENRLKDTFHSVAESYFNGIYKEKAKNPETREKNWERLKNHIFPYIGDKHVSEIKVKELVSIYEKIADRSNTLKKIHQLVGAIMDHAITQGIIESHNCRLAVKNFYIKSSTPHPTIKLDELSKLFQDLANARIGKKTYLLICWSFLTALRPKEAVNAEWSEIDFDNKLWNIPKEKMKGQADKKRPHTVPLSSQAIQLLEVMKLFSENSSFVFAGRSSKNQPMNKATVNVALKRIGYKDKLTAHGIRAFIKTFLASHKVERNVSETILSHLLEGGDDLENTYNRYNYLEERKPIMQLIGDYCESCGMNLNL*	common_virus_hmm	common_virus	C4	18723	55620	74343	GCA_001008225.1|LCTJ01000023.1@region_55621_74343@tool_cenote_CDS_0005	shell	direct	high	1226	0.999	GCA_001008225.1_00701
GCA_001008225.1|LCTJ01000023.1@region_55621_74343@tool_cenote	cenote	CDS	60732	62501	GCA_001008225.1	LCTJ01000023.1	GCA_001008225.1|LCTJ01000023.1	GCA_001008225.1_LCTJ01000023.1	GCA_001008225.1|LCTJ01000023.1	GCA_001008225_1_21	GCA_001008225_1_21@C4	5113	6882	GCA_001008225_1_21_61	GCA_001008225_1_21_61	-	74342	.	PFAM:PF04735.11	DNA-helicase	MARLINAPHLADQVHEPYSDIFILAGRKAWQAWDNGKGEEWLLLCSLIHGLDRNIKPVILAEKQLENISSIRIVKEDQRSVKLVQYGELAQAEITAICQNLAKNSDAIDVKLLDSAAQTKEDLSAYIQRLRNDKDTADLAEQLAPPEKLKEKDGTNKKSRAFQKWLNLDMALQRGCREIYAYDGKTWNKQENDDLEEKAVKFLDENEFNYSDSTIERLIKTLKAQLPRMGEMSNDLIAFENGVLNRNTMEFESHNRQNWLTSCIPHKYDKHATDTPHFDKWLSFVSDGNKEKARNILAVLYAILTNRYNWQMFFEITGKGGSGKSVFASIATLLAGVKNTASSNLEKLDDERGLSGLENKTLILCPEQSKYAGDGSGLKSITGGDTVRVRYNYRDPFDVKITALVMLINNRPCSFTERSGGVDRRRVIFDFKKIVPEDERDPHFMDKITLEVGGIIRKVFDSFPDPNDAKKALKAQMESQEALEVKKLSDPLTDFFGYFYTTEQTDGLFIGVTSMGLDKIRTHLYPAYLAYTKAMNIAELGLNNFVIGVEQALKQNGNKHDFMKKHTKTGRRTNIHFKDFDSFRNEMFS*	rep_hall_hmm	common_virus	C4	18723	55620	74343	GCA_001008225.1|LCTJ01000023.1@region_55621_74343@tool_cenote_CDS_0006	shell	direct	high	1769	0.999	GCA_001008225.1_00702
GCA_001008225.1|LCTJ01000023.1@region_55621_74343@tool_cenote	cenote	CDS	62485	62928	GCA_001008225.1	LCTJ01000023.1	GCA_001008225.1|LCTJ01000023.1	GCA_001008225.1_LCTJ01000023.1	GCA_001008225.1|LCTJ01000023.1	GCA_001008225_1_21	GCA_001008225_1_21@C4	6866	7309	GCA_001008225_1_21_62	GCA_001008225_1_21_62	-	74342	.	.	hypothetical protein	MDMNQKLDYSKLSALELKAIAMSYRNMLENKGETFHSSLPYLSGAIEVLAEELADCPAMNIDELKILHDELLMVNKHLLQMAPKPPSSNPEEKVATLTNDEIIDGLLKNSIALSLVKTFKYFQEVIADRINAIENGVIKGVNNGTIN*	.	hypothetical_protein	C4	18723	55620	74343	GCA_001008225.1|LCTJ01000023.1@region_55621_74343@tool_cenote_CDS_0007	cloud	direct	high	443	0.998	GCA_001008225.1_00703
GCA_001008225.1|LCTJ01000023.1@region_55621_74343@tool_cenote	cenote	CDS	62930	63403	GCA_001008225.1	LCTJ01000023.1	GCA_001008225.1|LCTJ01000023.1	GCA_001008225.1_LCTJ01000023.1	GCA_001008225.1|LCTJ01000023.1	GCA_001008225_1_21	GCA_001008225_1_21@C4	7311	7784	GCA_001008225_1_21_63	GCA_001008225_1_21_63	-	74342	.	.	hypothetical protein	MKPSNPMQQLQQWKDNRNANLHSANTNQTKVKLYANPLSFKFAQLSRQFKLILDSNRKCLEVYPDDFHHKIKFRDELTDLVVRLKTGGKLFNEMVKAQGAKLNQNNQETIRNFNQANDYLIHKFGEVIKQIEQLQVEYVNSVVLLKNEKNLIVSEDK*	.	hypothetical_protein	C4	18723	55620	74343	GCA_001008225.1|LCTJ01000023.1@region_55621_74343@tool_cenote_CDS_0008	shell	direct	high	473	0.998	GCA_001008225.1_00704
GCA_001008225.1|LCTJ01000023.1@region_55621_74343@tool_cenote	cenote	CDS	63390	63596	GCA_001008225.1	LCTJ01000023.1	GCA_001008225.1|LCTJ01000023.1	GCA_001008225.1_LCTJ01000023.1	GCA_001008225.1|LCTJ01000023.1	GCA_001008225_1_21	GCA_001008225_1_21@C4	7771	7977	GCA_001008225_1_21_64	GCA_001008225_1_21_64	-	74342	.	.	hypothetical protein	MKAKKIKAFKEPYTPTPEQLEKSCKRIKQFLAFAEDYLHSGHYKGLAASIEQIKKAATIRKVAQHETK*	.	hypothetical_protein	C4	18723	55620	74343	GCA_001008225.1|LCTJ01000023.1@region_55621_74343@tool_cenote_CDS_0009	shell	direct	high	206	0.995	GCA_001008225.1_00705
GCA_001008225.1|LCTJ01000023.1@region_55621_74343@tool_cenote	cenote	CDS	63586	63786	GCA_001008225.1	LCTJ01000023.1	GCA_001008225.1|LCTJ01000023.1	GCA_001008225.1_LCTJ01000023.1	GCA_001008225.1|LCTJ01000023.1	GCA_001008225_1_21	GCA_001008225_1_21@C4	7967	8167	GCA_001008225_1_21_65	GCA_001008225_1_21_65	-	74342	.	.	hypothetical protein	MTEQVNLPYQLIFVYDDGDQFIAGKYDTLREALQAKIRCKHEIGQADICGRVLEVITILKGGDNES*	.	hypothetical_protein	C4	18723	55620	74343	GCA_001008225.1|LCTJ01000023.1@region_55621_74343@tool_cenote_CDS_0010	shell	direct	high	200	0.995	GCA_001008225.1_00706
GCA_001008225.1|LCTJ01000023.1@region_55621_74343@tool_cenote	cenote	CDS	63779	64027	GCA_001008225.1	LCTJ01000023.1	GCA_001008225.1|LCTJ01000023.1	GCA_001008225.1_LCTJ01000023.1	GCA_001008225.1|LCTJ01000023.1	GCA_001008225_1_21	GCA_001008225_1_21@C4	8160	8408	GCA_001008225_1_21_66	GCA_001008225_1_21_66	-	74342	.	.	hypothetical protein	MANRIIQVEQCQINLLKLQMDGLSQLESMLLALYINPDVFDEMDSFDIAYTIKGIKNLLSYIKVDMEERIAFIEGVQESSND*	.	hypothetical_protein	C4	18723	55620	74343	GCA_001008225.1|LCTJ01000023.1@region_55621_74343@tool_cenote_CDS_0011	cloud	direct	high	248	0.996	GCA_001008225.1_00707
GCA_001008225.1|LCTJ01000023.1@region_55621_74343@tool_cenote	cenote	CDS	64020	64616	GCA_001008225.1	LCTJ01000023.1	GCA_001008225.1|LCTJ01000023.1	GCA_001008225.1_LCTJ01000023.1	GCA_001008225.1|LCTJ01000023.1	GCA_001008225_1_21	GCA_001008225_1_21@C4	8401	8997	GCA_001008225_1_21_67	GCA_001008225_1_21_67	-	74342	.	PF10554.9	Ash protein family	MNIIYVNYKQCENNYNTFRFTKCGQICEYIYTLAKSKVSRGKLNYLLLANDSTPLNRAFFVRDIRTPKEYADFVFNLNPIILSMVERNEPSLTGCFPVETVFHLVTFYRPTVESLAVVPENLLLELTQMYQFIFALIRAPQIKIRLLADNEQQARSRFTDGDTLLFVGRINQNPLKNNHTLAALPTLSVSAEMEVAHG*	hhsuite_tools	hypothetical_protein	C4	18723	55620	74343	GCA_001008225.1|LCTJ01000023.1@region_55621_74343@tool_cenote_CDS_0012	cloud	direct	high	596	0.998	GCA_001008225.1_00708
GCA_001008225.1|LCTJ01000023.1@region_55621_74343@tool_cenote	cenote	CDS	64664	64987	GCA_001008225.1	LCTJ01000023.1	GCA_001008225.1|LCTJ01000023.1	GCA_001008225.1_LCTJ01000023.1	GCA_001008225.1|LCTJ01000023.1	GCA_001008225_1_21	GCA_001008225_1_21@C4	9045	9368	GCA_001008225_1_21_68	GCA_001008225_1_21_68	-	74342	.	.	hypothetical protein	MNLQEKFEQEYKTAPLTITQKLVYPHFVINYSEEFDLFYSVFNLDKNNTFCDEVGTELLDALLSGIAIKQSTCEIPLLVTKQDLDLIYSLETSNPIINLDEQYQTLQ*	.	hypothetical_protein	C4	18723	55620	74343	GCA_001008225.1|LCTJ01000023.1@region_55621_74343@tool_cenote_CDS_0013	cloud	direct	high	323	0.997	GCA_001008225.1_00710
GCA_001008225.1|LCTJ01000023.1@region_55621_74343@tool_cenote	cenote	CDS	65146	65367	GCA_001008225.1	LCTJ01000023.1	GCA_001008225.1|LCTJ01000023.1	GCA_001008225.1_LCTJ01000023.1	GCA_001008225.1|LCTJ01000023.1	GCA_001008225_1_21	GCA_001008225_1_21@C4	9527	9748	GCA_001008225_1_21_69	GCA_001008225_1_21_69	-	74342	.	COG3311	Predicted DNA-binding transcriptional regulator AlpA [Transcription, Mobilome: prophages, transposons]. 	MNEAQKLNLNLNPQQKLISGETACHIVGFGRTKLNLLVKAKKFPQPIRFSQNFVRWDLEEVNQWIEEQKAARA*	mmseqs_cdd	nonviral_gene	C4	18723	55620	74343	GCA_001008225.1|LCTJ01000023.1@region_55621_74343@tool_cenote_CDS_0014	shell	direct	high	221	0.995	GCA_001008225.1_00711
GCA_001008225.1|LCTJ01000023.1@region_55621_74343@tool_cenote	cenote	CDS	65487	66161	GCA_001008225.1	LCTJ01000023.1	GCA_001008225.1|LCTJ01000023.1	GCA_001008225.1_LCTJ01000023.1	GCA_001008225.1|LCTJ01000023.1	GCA_001008225_1_21	GCA_001008225_1_21@C4	9868	10542	GCA_001008225_1_21_70	GCA_001008225_1_21_70	-	74342	.	.	hypothetical protein	MQKGRLMSKLLDVDLEEQKTVKEWLKIYGISFDENQTDEELRKLLFNNFIPPKKLAIEYLFTGKTPEKKLGEAIDLLDKLEYLIFHWVREKNKFIIDILSNGVTAEKMMEHNEKDNEYGELSLDCIGCLKTDFNELYALSEVSPTAERMKLGKTQKTKKPDQIKAEEWVKDVWRMHPDVTQGQMAIDVKDALDLPQTIKTITGWIKPLDPQKGKRKRKPKDYYQ*	.	hypothetical_protein	C4	18723	55620	74343	GCA_001008225.1|LCTJ01000023.1@region_55621_74343@tool_cenote_CDS_0015	cloud	direct	moderate	657	0.973	GCA_001008225.1_00712
GCA_001008225.1|LCTJ01000023.1@region_55621_74343@tool_cenote	cenote	CDS	66252	66632	GCA_001008225.1	LCTJ01000023.1	GCA_001008225.1|LCTJ01000023.1	GCA_001008225.1_LCTJ01000023.1	GCA_001008225.1|LCTJ01000023.1	GCA_001008225_1_21	GCA_001008225_1_21@C4	10633	11013	GCA_001008225_1_21_71	GCA_001008225_1_21_71	-	74342	.	.	hypothetical protein	MIKSVLSAFGSFVFSALDFLLFLAILLFVGLLVFIFWPILKWPLLAFLIGAIAFFCYLIYKIKEKPKPLEQDEILSSWAEQELQRPIIQRILQKQEENKPFISGTITHIGNDGKETQLGNITIHLK*	.	hypothetical_protein	C4	18723	55620	74343	GCA_001008225.1|LCTJ01000023.1@region_55621_74343@tool_cenote_CDS_0016	shell	direct	high	380	0.997	GCA_001008225.1_00713
GCA_001008225.1|LCTJ01000023.1@region_55621_74343@tool_cenote	cenote	CDS	66899	67366	GCA_001008225.1	LCTJ01000023.1	GCA_001008225.1|LCTJ01000023.1	GCA_001008225.1_LCTJ01000023.1	GCA_001008225.1|LCTJ01000023.1	GCA_001008225_1_21	GCA_001008225_1_21@C4	11280	11747	GCA_001008225_1_21_72	GCA_001008225_1_21_72	-	74342	.	PFAM:PF04883.11	tail-component	MAVQIKGLKELEQNLKKLNKDINKVAAKAIRKGLNSAAKSVEKTIKPNVPTLKSSTNFRQKGTIKNNVRHKTRVAKDGLSGITAIRVMRTNGRRMAKIGENTKDKSDPFYWWMVEYGTVKMKGRHYMEKGFKSGEAQALRIAKEVAEEELKKAFK*	hallmark_hmm	common_virus	C4	18723	55620	74343	GCA_001008225.1|LCTJ01000023.1@region_55621_74343@tool_cenote_CDS_0017	cloud	direct	high	467	0.998	GCA_001008225.1_00714
GCA_001008225.1|LCTJ01000023.1@region_55621_74343@tool_cenote	cenote	CDS	67382	69049	GCA_001008225.1	LCTJ01000023.1	GCA_001008225.1|LCTJ01000023.1	GCA_001008225.1_LCTJ01000023.1	GCA_001008225.1|LCTJ01000023.1	GCA_001008225_1_21	GCA_001008225_1_21@C4	11763	13430	GCA_001008225_1_21_73	GCA_001008225_1_21_73	-	74342	.	CDD:COG4626	Large-Terminase	MAIWHEYAEKIQSGEIVACKKIKQAVARYFNDLNNPDYFFDQSAVEKFIAFSKLCPHVKGHLRGEPIILSDWQVFLFANILGFKRKDTGLRKYRSAYVQVARKNAKSTVAAVLANWFLVMEGGQQDIYTAAVSRDQARIVFDDARQMCLLSPLLKKRLNIQQHKLINPKNNSIMRPLAAKSSTIEGTNPSLAIVDEYHLHTDNSVYSALELGQGARPEGLLFAITTAGSNVISACKQHYDYCAQILEGNEQNDSLFVLIFELDEENEIDKQENWIKANPNIGKSIPYLDFENTIKKARGIPSEWVEMLTKRFNVWCQGTTPWLGEGNWAQCERQYTESDLLHQDCYLGLDLSSTNDLTSLCYTFPHGNKVRLLTRHYIPEFQLNNVANKNRAMYRNWVRSGWLIATEGDCIDYDKIRDDILKDAQRFNIKMIGFDVWNATHLRTQLQAAGLEVEPFPQTYQRFSPVAKSAEVLINRQMIEHYGDPVLTWALSNVVMETDANANIKPNKKKAANKIDPAVAFLMSFGTYQLEYGDLIFELSDEHKHALEQFNGIDL*	hallmark_hmm	common_virus	C4	18723	55620	74343	GCA_001008225.1|LCTJ01000023.1@region_55621_74343@tool_cenote_CDS_0018	shell	direct	high	1667	0.999	GCA_001008225.1_00715
GCA_001008225.1|LCTJ01000023.1@region_55621_74343@tool_cenote	cenote	CDS	69057	69431	GCA_001008225.1	LCTJ01000023.1	GCA_001008225.1|LCTJ01000023.1	GCA_001008225.1_LCTJ01000023.1	GCA_001008225.1|LCTJ01000023.1	GCA_001008225_1_21	GCA_001008225_1_21@C4	13438	13812	GCA_001008225_1_21_74	GCA_001008225_1_21_74	-	74342	.	CDD:COG3747	Small-Terminase	MTAKKKNLHTPPSFLDPIAKSVWKERIPQLLERGDIQDADLIHLELYCVNYSLFRAAVEDIHKNGFSIVNSQGTQSRNPALSAKADAEKVMVKMSSLLGFDPVSRRKNPVEVDSTDMIDEILTM*	hallmark_hmm	common_virus	C4	18723	55620	74343	GCA_001008225.1|LCTJ01000023.1@region_55621_74343@tool_cenote_CDS_0019	shell	direct	high	374	0.997	GCA_001008225.1_00716
GCA_001008225.1|LCTJ01000023.1@region_55621_74343@tool_cenote	cenote	CDS	69661	70017	GCA_001008225.1	LCTJ01000023.1	GCA_001008225.1|LCTJ01000023.1	GCA_001008225.1_LCTJ01000023.1	GCA_001008225.1|LCTJ01000023.1	GCA_001008225_1_21	GCA_001008225_1_21@C4	14042	14398	GCA_001008225_1_21_75	GCA_001008225_1_21_75	-	74342	.	PDB:5H0M_A	HNH-endonuclease	MPYQPLRRCSYPGCRNKVKSGRCEEHKPKDNRPNSSARGYDHKWSKYRAQYLKHHPLCVMCLEKGIYTPATVIDHIKPVENGQADPLFWVESNHQSLCRDCHSYKTRVIDQRGFGAKK*	common_virus_hmm	common_virus	C4	18723	55620	74343	GCA_001008225.1|LCTJ01000023.1@region_55621_74343@tool_cenote_CDS_0020	.	unmatched_CDS	none	0	0	.
GCA_001008225.1|LCTJ01000023.1@region_55621_74343@tool_cenote	cenote	CDS	70028	70342	GCA_001008225.1	LCTJ01000023.1	GCA_001008225.1|LCTJ01000023.1	GCA_001008225.1_LCTJ01000023.1	GCA_001008225.1|LCTJ01000023.1	GCA_001008225_1_21	GCA_001008225_1_21@C4	14409	14723	GCA_001008225_1_21_76	GCA_001008225_1_21_76	-	74342	.	CDD:TIGR01560	uncharacterized-phage-protein-(possible-DNA-packaging)	MANINLTIDDIKAHLNLDHDLDDALLETYKVATLEVCQKHIGKNFGDEETENTVPFTPSIKVGCLMYIAYLYTNREAITDLANLKQAPMTISALWEVYREPCAY*	hallmark_hmm	common_virus	C4	18723	55620	74343	GCA_001008225.1|LCTJ01000023.1@region_55621_74343@tool_cenote_CDS_0021	shell	direct	high	314	0.997	GCA_001008225.1_00717
GCA_001008225.1|LCTJ01000023.1@region_55621_74343@tool_cenote	cenote	CDS	70329	70685	GCA_001008225.1	LCTJ01000023.1	GCA_001008225.1|LCTJ01000023.1	GCA_001008225.1_LCTJ01000023.1	GCA_001008225.1|LCTJ01000023.1	GCA_001008225_1_21	GCA_001008225_1_21@C4	14710	15066	GCA_001008225_1_21_77	GCA_001008225_1_21_77	-	74342	.	PDB:2KZ4_A	Head-tail-adaptor	MAVMLKAGKYNKVITIEARNYPRERETNLHGEHKAFWKHIATVRASVEPLQGREYFSGPFQMGENIIRIRIRYIEGITNKMRIKYGKRLFDIYSVIDSMESHRELQLMCKEGEAYGEY*	hallmark_hmm	common_virus	C4	18723	55620	74343	GCA_001008225.1|LCTJ01000023.1@region_55621_74343@tool_cenote_CDS_0022	shell	direct	high	356	0.997	GCA_001008225.1_00718
GCA_001008225.1|LCTJ01000023.1@region_55621_74343@tool_cenote	cenote	CDS	70669	71901	GCA_001008225.1	LCTJ01000023.1	GCA_001008225.1|LCTJ01000023.1	GCA_001008225.1_LCTJ01000023.1	GCA_001008225.1|LCTJ01000023.1	GCA_001008225_1_21	GCA_001008225_1_21@C4	15050	16282	GCA_001008225_1_21_78	GCA_001008225_1_21_78	-	74342	.	CDD:COG4695	Portal-protein	MWNPFRRKEQRSEPTTLEELLSYMGVNNTGAGEFVSPQTAESLPAVMNAVTVISEAVASMPCYLYALKEDGRERIYRHPVEYLLNEMPNRSQTPYQFKNTMMRHCLLNGNAYAVIEWNNKGEPISLTPYQPSAVNIFRKVTGEYIYQITDLNGVTKNYLQDEILHLRHSSIDGFMGRSPITVCRETVGLGLAQQRHGAAIMKNGLMASGLISTAEWLDDAKAQKAVKALERYKGAKNAGKTPILEGSMEYKQLGMTNQDAEWLASRTFTISDIARIYNISPIFLQDYSNSSYSNFSEASRAFLSQTLRPWLTNFEQQLKDALMIDLGSNTNKRYLIEFDTSDLLRTSQSERFSSYDVAIKAGVMSPNEVRRREGLPPYEGGDEFSQAWKQTVEVKRGDEQEQGASNGSDA*	hallmark_hmm	common_virus	C4	18723	55620	74343	GCA_001008225.1|LCTJ01000023.1@region_55621_74343@tool_cenote_CDS_0023	shell	direct	high	1232	0.999	GCA_001008225.1_00719
GCA_001008225.1|LCTJ01000023.1@region_55621_74343@tool_cenote	cenote	CDS	71903	72469	GCA_001008225.1	LCTJ01000023.1	GCA_001008225.1|LCTJ01000023.1	GCA_001008225.1_LCTJ01000023.1	GCA_001008225.1|LCTJ01000023.1	GCA_001008225_1_21	GCA_001008225_1_21@C4	16284	16850	GCA_001008225_1_21_79	GCA_001008225_1_21_79	-	74342	.	CDD:COG3740	head-maturation-protease	MKKEFEIRSATIATDEENQKLVGYAVKWNSPSQVLYCDFVESFAPKAFSESLASGEDVRALFEHDYTKLLGRTSAGTLKLEEDSIGLRFELTPPNTTIGKDLLVSVARGDITGMSFGFRASQEEWDFDVEPCQRTVQKAELFEVTVTSIPAYPESSVEIAKRSMVAAKEKTQEHSTALLKQWLDVMEA*	hallmark_hmm	common_virus	C4	18723	55620	74343	GCA_001008225.1|LCTJ01000023.1@region_55621_74343@tool_cenote_CDS_0024	shell	direct	high	566	0.998	GCA_001008225.1_00720
GCA_001008225.1|LCTJ01000023.1@region_55621_74343@tool_cenote	cenote	CDS	72514	73704	GCA_001008225.1	LCTJ01000023.1	GCA_001008225.1|LCTJ01000023.1	GCA_001008225.1_LCTJ01000023.1	GCA_001008225.1|LCTJ01000023.1	GCA_001008225_1_21	GCA_001008225_1_21@C4	16895	18085	GCA_001008225_1_21_80	GCA_001008225_1_21_80	-	74342	.	CDD:COG4653	Major-Capsid-protein	MLKKLIELRQQKAEKVAEMRAMLDKAEKENRSLDETESVDFDKLKDLVKQLSDEISKYETVADEERNLGAQSNPLETRSTKQFSNDELRHYIKTGELRNLTTANGEDGGYSVIPQLDKEVMKRLTDDSVMRQLCNVVRLPIGAKEYKKLVSAGGATVEHGTEGTARNGTATPKLHEVTIALNSIYAYPKTTQEILDFSSIDVLGWLTDEITETFTETEEVDLTSGDGNKKSKGLLTYERTTENDKVRPFGKLQKIEVAGATKIEADTLIDAFYTLHSKYRKNAVWVMSSTIAAALQKLKNKNGDYIWRDGLTTDAPATLLGRPVYFLETMPTGGANQAVIAFGDFKRGYFIVDHETGVRTRPDNLTEPGFYKVHTDKYLGGGVVDSNAIKVIETTA*	hallmark_hmm	common_virus	C4	18723	55620	74343	GCA_001008225.1|LCTJ01000023.1@region_55621_74343@tool_cenote_CDS_0025	shell	direct	high	1190	0.999	GCA_001008225.1_00721
GCA_001008225.1|LCTJ01000023.1@region_55621_74343@tool_cenote	cenote	CDS	73714	74112	GCA_001008225.1	LCTJ01000023.1	GCA_001008225.1|LCTJ01000023.1	GCA_001008225.1_LCTJ01000023.1	GCA_001008225.1|LCTJ01000023.1	GCA_001008225_1_21	GCA_001008225_1_21@C4	18095	18493	GCA_001008225_1_21_81	GCA_001008225_1_21_81	-	74342	.	PFAM:PF06141.10	Minor-tail-protein	MLIHEKIRDEVIERLKPALSSQVKRFYSGRILGLNPSEQCPAISVYLEDISLDQTCLCDSELNATLNIAIYLKPHSGEDELDNIAELIRNTIYNSELKSVLNISLKSYDYNYDEEQAAWISSVLQFAINYDE*	hallmark_hmm	common_virus	C4	18723	55620	74343	GCA_001008225.1|LCTJ01000023.1@region_55621_74343@tool_cenote_CDS_0026	cloud	direct	high	398	0.997	GCA_001008225.1_00722
GCA_001008225.1|LCTJ01000023.1@region_55621_74343@tool_cenote	cenote	tRNA	59061	59146	GCA_001008225.1	LCTJ01000023.1	GCA_001008225.1|LCTJ01000023.1	GCA_001008225.1_LCTJ01000023.1	GCA_001008225.1|LCTJ01000023.1	GCA_001008225_1_21	GCA_001008225_1_21@C4	3442	3527	tRNA-Leu	tRNA-Leu	+	74342	.	tRNAscan-SE score: 57.5	Leu	NA	tRNAscan-SE	.	C4	18723	55620	74343	GCA_001008225.1|LCTJ01000023.1@region_55621_74343@tool_cenote_tRNA_0001	.	.	.	.	.	.