core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_001042925.1|JYLC01000019.1@region_1_3819@tool_cenote	cenote	CDS	1	254	GCA_001042925.1	JYLC01000019.1	GCA_001042925.1|JYLC01000019.1	GCA_001042925.1_JYLC01000019.1	GCA_001042925.1|JYLC01000019.1	GCA_001042925_1_10	GCA_001042925_1_10	1	255	GCA_001042925_1_10_1	GCA_001042925_1_10_1	+	3819	.	.	hypothetical protein	LLDAIVFEGQPVLCKFASVVRPTQDRFGRITNTQVLVDLLAVGGKPMAPTAQAPARPQAQAQAPRPAQQPQGQDKQDKSPDAKA*	.	hypothetical_protein	NaN	.	0	3819	GCA_001042925.1|JYLC01000019.1@region_1_3819@tool_cenote_CDS_0001	cloud	direct	moderate	221	0.87	GCA_001042925.1_00698
GCA_001042925.1|JYLC01000019.1@region_1_3819@tool_cenote	cenote	CDS	271	363	GCA_001042925.1	JYLC01000019.1	GCA_001042925.1|JYLC01000019.1	GCA_001042925.1_JYLC01000019.1	GCA_001042925.1|JYLC01000019.1	GCA_001042925_1_10	GCA_001042925_1_10	272	364	GCA_001042925_1_10_2	GCA_001042925_1_10_2	+	3819	.	.	hypothetical protein	MLRYLSLFAVGLATGYAWGWIDGLAASLAV*	.	hypothetical_protein	NaN	.	0	3819	GCA_001042925.1|JYLC01000019.1@region_1_3819@tool_cenote_CDS_0002	cloud	direct	moderate	92	0.989	GCA_001042925.1_00699
GCA_001042925.1|JYLC01000019.1@region_1_3819@tool_cenote	cenote	CDS	375	626	GCA_001042925.1	JYLC01000019.1	GCA_001042925.1|JYLC01000019.1	GCA_001042925.1_JYLC01000019.1	GCA_001042925.1|JYLC01000019.1	GCA_001042925_1_10	GCA_001042925_1_10	376	627	GCA_001042925_1_10_3	GCA_001042925_1_10_3	+	3819	.	.	hypothetical protein	MEGSVSVQVCKTWVQNADGTVGCTHLEWIQTYLLPPEAEGYLTLLMGGFDPSAFRLGFAGTIGLFAVGLGAGLIISAMRKARN*	.	hypothetical_protein	NaN	.	0	3819	GCA_001042925.1|JYLC01000019.1@region_1_3819@tool_cenote_CDS_0003	cloud	direct	high	251	0.996	GCA_001042925.1_00700
GCA_001042925.1|JYLC01000019.1@region_1_3819@tool_cenote	cenote	CDS	640	858	GCA_001042925.1	JYLC01000019.1	GCA_001042925.1|JYLC01000019.1	GCA_001042925.1_JYLC01000019.1	GCA_001042925.1|JYLC01000019.1	GCA_001042925_1_10	GCA_001042925_1_10	641	859	GCA_001042925_1_10_4	GCA_001042925_1_10_4	+	3819	.	PFAM:PF10389.8	major-head-protein	MEKMKALFRNASIATAGLAVANVSFAESLLDETTKGVLAQASTDGGSVAKLVIAAVAVLVGLALVIGAMRKA*	phrogs_hmm	hypothetical_protein	NaN	.	0	3819	GCA_001042925.1|JYLC01000019.1@region_1_3819@tool_cenote_CDS_0004	cloud	direct	high	218	0.995	GCA_001042925.1_00701
GCA_001042925.1|JYLC01000019.1@region_1_3819@tool_cenote	cenote	CDS	968	2122	GCA_001042925.1	JYLC01000019.1	GCA_001042925.1|JYLC01000019.1	GCA_001042925.1_JYLC01000019.1	GCA_001042925.1|JYLC01000019.1	GCA_001042925_1_10	GCA_001042925_1_10	969	2123	GCA_001042925_1_10_5	GCA_001042925_1_10_5	+	3819	.	.	hypothetical protein	MPRFILLIITLLFGSAAHAEYYYWYMGYFNKKVSSPTAGCDLYFSSFSKDPGRVFVMEPSSNPSEAGKVFYCVVRSGDWILFNTDVYLKGDRCPEGTELDLSAGECRENKCKILAGSLYEKGGHQAPISRFINYLGCEIAVSSIDGCIGPAEGEAGGTFCRVIGSFTGNWFTSKGSCAFGCDVGPGDGPPPGGDGGTGGDGGSNPPGGDGGSDGGTKPGNGGGDDGSSGGGGGGGGGGNNPCQGHVGSDCGTTPGGDGSSGGDGDGSGSSGGTGGDGGDGSGGGGLKEPKQGSFDKTIKEYDDAIVKAQKDFQELQGKFESVLASKFDIHLGTGGGSLPCWDFTALGQRYDVCLTQYAQELSVIRYVVLFIAAILAGWIVFYRS*	.	hypothetical_protein	NaN	.	0	3819	GCA_001042925.1|JYLC01000019.1@region_1_3819@tool_cenote_CDS_0005	cloud	direct	moderate	893	0.773	GCA_001042925.1_00702
GCA_001042925.1|JYLC01000019.1@region_1_3819@tool_cenote	cenote	CDS	2132	2482	GCA_001042925.1	JYLC01000019.1	GCA_001042925.1|JYLC01000019.1	GCA_001042925.1_JYLC01000019.1	GCA_001042925.1|JYLC01000019.1	GCA_001042925_1_10	GCA_001042925_1_10	2133	2483	GCA_001042925_1_10_6	GCA_001042925_1_10_6	+	3819	.	PFAM:PF10734.8	Minor-Head-Virion-Protein	MDIPFLSDILAWMQSLWDFLYSGVYDFVTDAFVLLTKMAIKGWFEMQLFVAEIGYKAFREVVGGIGIGSTITSYYSSLDGDLRSLLAFFGLPDAVNMIFAAIGTRFSMSFIPFIGK*	hallmark_hmm	common_virus	NaN	.	0	3819	GCA_001042925.1|JYLC01000019.1@region_1_3819@tool_cenote_CDS_0006	cloud	direct	high	350	0.997	GCA_001042925.1_00703
GCA_001042925.1|JYLC01000019.1@region_1_3819@tool_cenote	cenote	CDS	2484	3746	GCA_001042925.1	JYLC01000019.1	GCA_001042925.1|JYLC01000019.1	GCA_001042925.1_JYLC01000019.1	GCA_001042925.1|JYLC01000019.1	GCA_001042925_1_10	GCA_001042925_1_10	2485	3747	GCA_001042925_1_10_7	GCA_001042925_1_10_7	+	3819	.	PFAM:PF05707.11	Zonular-occludens-toxin-(Zot)	MAIKIHHGPNGSYKTSGAIQDDLIPAIKKGRVIITNVRGLTRERIFQVMPETPSSCDVINLDLEDLDDMEKMRTWFMWAPRGAFIIFDETQLIFLKSWREADLKRFDFPDGPEAAKAAGRPMGWLDAWTRHRHFNWDIILTTPNIAYIRDDIRMTAEKAYLHSNLAVIGIRGRYKESQHSAQDNKPPARDVIVEIKKIRQETFALYESTATGSVTDTIAGKSLFRQPKILLFMAIPALAIGSVVYDGGPRLLMGDPVSPPAAGTAAPAQAGPAVGAARATGAAGPDAADDVPGHPGVPGAAPVGHPFAGRDFIVKATLLSASGRRTYLFAVRGQDGSEFTLTDRDLTDTGYAVVPRGNCAAELSFKGGWSGYAACAGRSALGNAPPAQAAAPNVPPAAANSAAVRVTVVPDTSRLPRSIN*	hallmark_hmm	common_virus	NaN	.	0	3819	GCA_001042925.1|JYLC01000019.1@region_1_3819@tool_cenote_CDS_0007	cloud	direct	high	1262	0.999	GCA_001042925.1_00704
GCA_001042925.1|JYLC01000019.1@region_1_3819@tool_cenote	cenote	CDS	3757	3816	GCA_001042925.1	JYLC01000019.1	GCA_001042925.1|JYLC01000019.1	GCA_001042925.1_JYLC01000019.1	GCA_001042925.1|JYLC01000019.1	GCA_001042925_1_10	GCA_001042925_1_10	3758	3817	GCA_001042925_1_10_8	GCA_001042925_1_10_8	+	3819	.	.	hypothetical protein	MNWTSYFAALGLAFLAYLAG	.	hypothetical_protein	NaN	.	0	3819	GCA_001042925.1|JYLC01000019.1@region_1_3819@tool_cenote_CDS_0008	.	unmatched_CDS	none	0	0	.
GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote	cenote	CDS	65	175	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C0	66	176	GCA_001042925_1_11_1	GCA_001042925_1_11_1	+	1322044	.	.	hypothetical protein	MNWTSYFAALGLAFLAYLAGFFFAVAVTPTGPVWPL*	.	hypothetical_protein	C0	38932.0	0	38932	GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote_CDS_0001	cloud	direct	high	110	0.991	GCA_001042925.1_00705
GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote	cenote	CDS	313	1605	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C0	314	1606	GCA_001042925_1_11_2	GCA_001042925_1_11_2	+	1322044	.	4CIJ_B	GST REP (E.C.5.99.1.2)	MKKISHQIRVSIESDGQVLESPKGRLFFDDTTAQFTDLSGVRILRCGVDTVRQLYNGKLRPEVMALFDLSVDVVEFAGYEWSKGRIGRDSGYQYRLQNAEMGLILLIKNHNIKVDTLGSHLKIEVSPHALDGADPHILQGVLDDLAAAVLSHCETNQAAVHIALDVQGWKPPRDLVDRMHCRSRRVRQISGIERIEFDGNASVYGRGETYMFGSANGLQLSIYNKTLQARATDKLDYWESVWATLNGDPFGDGDPAYNPLETVWRLEFRFHHSIVQQFSEGSRMASGEVIGCRTYEGLCPHLQGLWNYACESFKLLSRTAVYDPFWSLISQDARVQVECDPLIERTEYRRYYKTAKGFSGRNCEMFLGQFVSLIARERVPAKKAIESARKLEFWHVIEDHYLAKGWTRRDLERHIHKLMCDRYLRRGYAV*	hhsuite_tools	hypothetical_protein	C0	38932.0	0	38932	GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote_CDS_0002	cloud	direct	high	1292	0.999	GCA_001042925.1_00706
GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote	cenote	CDS	1605	2594	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C0	1606	2595	GCA_001042925_1_11_3	GCA_001042925_1_11_3	+	1322044	.	PDB:5C6K_B	Integrase	MSITKLPDGRWFVDVEPIKGKRFRKRFKTKMEAQQFEATARQKCAENPCWTLRPKDRRRLSELVELWYELHGQTLSNGHRCVAILRLVAKDLGDPVAVSLEPAKVARLRSRQIANGMSGKTANNRLGYLKSMYNELRQLGVIDYENPVGRMRPLKLQERPLSYLTKHQVSELLTALDARTTSPHPKMVARICLATGARWGEAQALTPERLKGNTVIFANTKSKRVRSVPISEQLAADIRRHWQTHGPFTNCLGVFRLVLLSTSIKLPKGQASHVLRHTFASHFIMNGGHIVTLQHILGHASLSMTMRYAHLSQDHLSEAVRLNPLLAFF*	common_virus_hmm	common_virus	C0	38932.0	0	38932	GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote_CDS_0003	cloud	direct	high	989	0.999	GCA_001042925.1_00707
GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote	cenote	CDS	3093	4346	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C0	3094	4347	GCA_001042925_1_11_4	GCA_001042925_1_11_4	+	1322044	.	PDB:1Z19_B	Integrase	MLRANGPQKGPLIKDSPVLTERQIRALKPAEKEYTVSDGRSARGEGVLMLRVRPNGTKEFYFQRRKNGRKLKTKLGTWPTMALTEARDRCREEKEIQVEAGTFKELMAAYVAKLKQEGAASAEHVEWSFKHYVSEPFPTLVERPAVLIGPADIRDILAKMIAGGVTTMTNRVRSRLHSAFQSALQQDYNPRTYLEQENRFGLTSNPVASIPVQEDWEQPGDRALTEKELQALWHLLPEKLSLTTSELLKFLIASGGQRPEQLLRSDRTMYQRDHVMIRNGKGGEGERAMHVVPYNKLMRASLKEMDCISEKSAYPFQGKEEGKSLNPQSLSRAVTKLYGRHHKSFNGPFTLRDIRRTCKTLMAKAGLTKELRDRIQGHAFNDVSSKHYDRYDYFQEKKRGLDRWAAWLEKNVIDTKK*	common_virus_hmm	common_virus	C0	38932.0	0	38932	GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote_CDS_0004	cloud	direct	moderate	1202	0.959	GCA_001042925.1_00708
GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote	cenote	CDS	4549	4752	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C0	4550	4753	GCA_001042925_1_11_5	GCA_001042925_1_11_5	-	1322044	.	.	hypothetical protein	MSDQANRQHMLACEARYWLRRGITTPEKVAELSETLKRRGESAVEQLIAEMRRQWLARTEWIGGEDG*	.	hypothetical_protein	C0	38932.0	0	38932	GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote_CDS_0005	cloud	ambiguous	low	7	0.034	GCA_001042925.1_00709
GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote	cenote	CDS	4745	4987	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C0	4746	4988	GCA_001042925_1_11_6	GCA_001042925_1_11_6	-	1322044	.	.	hypothetical protein	MRMLILQSGRRCGRSKSLQPLLQYALANGWRVGLTNGGHLRFTKAERPVIHTSSTPSDWRAVRNAVAMLARADRKEVILV*	.	hypothetical_protein	C0	38932.0	0	38932	GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote_CDS_0006	cloud	direct	high	242	0.996	GCA_001042925.1_00709
GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote	cenote	CDS	4975	5832	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C0	4976	5833	GCA_001042925_1_11_7	GCA_001042925_1_11_7	-	1322044	.	PDB:2G1P_B	Adenine-specific-DNA-methyltransferase	MTAYRPLLRYHGGKWKLAPWIISHMAEHKTYVEPFGGGGSVLIRKPRAYAEVYNDLDGDVVNLFRVARDRGEELRQALALTPFARGEFDISYDETADTLERARRMIVRSFQGFGSAAASGERTGFRSSSSRSGTSPAMDWRNYPDALSAIIDRLQGVVIENRDAMEVMAHHDRPTTLHYVDPPYVHSTRSPKVRHNDTGKSYRYELSDEQHRDLAVALHRLDGMVIVSGYPCPLYDDLFQDWHCIERAAHADGARQRVECLWLNPSAYQGLAQFDIFKEGNACAC*	common_virus_hmm	common_virus	C0	38932.0	0	38932	GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote_CDS_0007	cloud	direct	high	857	0.999	GCA_001042925.1_00710
GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote	cenote	CDS	5829	6455	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C0	5830	6456	GCA_001042925_1_11_8	GCA_001042925_1_11_8	-	1322044	.	1B71_A	RUBRERYTHRIN	MSDLFYLQDSRSNVGSRATFWRAGGGYTTNLDDAETFARERAVKQYENRDSDLPWPVDYVRARAEVGVDCQYLTKSEAEAYRNEDGRMYVAYAREWDGNDLVWRGAQGPTANLDDAIHPGAADAAVFLAQGFELWPCGYIAEHSRLVVRAMLLDHKQALRSVGLKLPKLQRPRYRSYSNLLNCEGCGRFLNERQRFDDCPNCGTRNAP*	hhsuite_tools	hypothetical_protein	C0	38932.0	0	38932	GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote_CDS_0008	cloud	direct	high	626	0.998	GCA_001042925.1_00711
GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote	cenote	CDS	6452	6628	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C0	6453	6629	GCA_001042925_1_11_9	GCA_001042925_1_11_9	-	1322044	.	.	hypothetical protein	MHELLKMLDNPRSLLNFSLAILAVLALFFMLKSGAQAASQPASSFSAPKEADSRGKRP*	.	hypothetical_protein	C0	38932.0	0	38932	GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote_CDS_0009	cloud	direct	high	176	0.994	GCA_001042925.1_00712
GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote	cenote	CDS	6730	6906	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C0	6731	6907	GCA_001042925_1_11_10	GCA_001042925_1_11_10	-	1322044	.	.	hypothetical protein	MKPCTLGKRHSWTFVRNVVTSHLSGRFGRITKRGFYRCECGAEKYGNAGDLSGGSTHA*	.	hypothetical_protein	C0	38932.0	0	38932	GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote_CDS_0010	cloud	direct	high	176	0.994	GCA_001042925.1_00713
GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote	cenote	CDS	6903	7343	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C0	6904	7344	GCA_001042925_1_11_11	GCA_001042925_1_11_11	-	1322044	.	.	hypothetical protein	MQANQPQGGSAKASTPRYDTIVIRGATGKDVPREVDGGEVVSWARGHELAAGDALLEFVNYVADGDCGITPELSTKARKALDLMERRSRLGWEADEQPEDWPASVNRAAQTAREVFNGSHEDAIQAIEYMHALLLQAAPVVQGGDV*	.	hypothetical_protein	C0	38932.0	0	38932	GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote_CDS_0011	cloud	direct	high	440	0.998	GCA_001042925.1_00714
GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote	cenote	CDS	7403	7609	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C0	7404	7610	GCA_001042925_1_11_12	GCA_001042925_1_11_12	-	1322044	.	PHA00080	DksA-like zinc finger domain containing protein	MDVIDQANERAENMIQAALAQRTNTRLAPSALWCEDCGEQIPEARRQAAPGCECCISCQELREHPARR*	mmseqs_cdd	common_virus	C0	38932.0	0	38932	GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote_CDS_0012	cloud	direct	high	206	0.995	GCA_001042925.1_00715
GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote	cenote	CDS	7621	7974	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C0	7622	7975	GCA_001042925_1_11_13	GCA_001042925_1_11_13	-	1322044	.	.	hypothetical protein	MQPLPHDYLQLIHDFQARQQENEVAGITALKRLLPIAQRDSGQSGVIGRFLLGLYNGQAHRFDLTELRRLDPALFDACLSVLRMDYAPKQEVHEYFEDGDAIWQDLRKRWAAASLPA*	.	hypothetical_protein	C0	38932.0	0	38932	GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote_CDS_0013	cloud	direct	high	353	0.997	GCA_001042925.1_00716
GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote	cenote	CDS	8019	10739	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C0	8020	10740	GCA_001042925_1_11_14	GCA_001042925_1_11_14	-	1322044	.	cd01029	TOPRIM_primases: The topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain found in the active site regions of bacterial DnaG-type primases and their homologs. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies.  The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. The prototypical bacterial primase. Escherichia coli DnaG is a single subunit enzyme.	MKEMDRELKADVLRRLQDQYGLTPIKGTKYMRKGECPTCGKKELYTLVDSPWFIRCGRGKCGDTWHIKEIYPELFDDWSKRAPATDKEPAASARAYLAHARGFDLALIDGWYSQENYWDRDLEIGSATVRFPLKKGGYWERLIDRPSRFGKKKARFKPGDSPRGVWWCPPSVDLQEVKELWIVEGIFDAIALLHHGIDAVSAMSSNAFPEQSLRELATARSGKLPKLIWALDNEPGAHRYTRRWVTEARALGYVCEAAQLPQRNNRKFDWNDLHQRWMFIDDAAERAAQIEKDLKTARHEGALLIAESPAEKALLMYDWNSRGEFHFRFGNRLFWFKLDLEKFDRAMRAFENSDDHEDKLLNDRQKRDKALQQSGNVVEIANCFPQALYFQRNEVTDESWYYFRIDRPDDESVKNTFTSAQVAAASEFKKRLLGVAAGAIFTGSGAQLDQIMKLQLTGLKTVATIDYLGYSREHACYVLGDVAVRGGVIEKANAEDFFEFQKLRLKTLQRSIKLQIATDAKDYRPEWLDWLWTCFGAKGLVALAFWFGSLFAEQIRAEFQSFPFLEATGEAGAGKSTLITFLWKLLGRADEEGQDPSKMTKAGLRRWLTQLSNMPMVMLEADRSDNSRAGGAAKSFDWDEFKPLFNGRALGVTGQKTAGNETYEPPFRGTLVMSQNATVQASEAIMTRIVKLHFIRPEITRESQAAADNLNHLDVLEVSHFLLMAIRAEARVLECFRERLKVHSATLRGLKQIRIERLILNHAQMMALVDALRLVVPLSEHQLACAQQTLMTMALERQDAVNADAPEVAEFWEVYDYLENLSEEPVLNHSKNPGTIAINLNEFVKLAADHRQKVADAATLRDLLKESRRHKFIEYKAVDSAVRAAHARQNPFTNRPSTVKCWIFQA*	mmseqs_cdd	common_virus	C0	38932.0	0	38932	GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote_CDS_0014	cloud	direct	high	2720	1.0	GCA_001042925.1_00717
GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote	cenote	CDS	10736	10969	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C0	10737	10970	GCA_001042925_1_11_15	GCA_001042925_1_11_15	-	1322044	.	.	hypothetical protein	MSGHISITVEVDQNQAEKYLLWLVSQYEAAMAECWYDDRYRYTPQGLRGKRILEDRPHIAGICRTIRELRKQIRGRA*	.	hypothetical_protein	C0	38932.0	0	38932	GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote_CDS_0015	cloud	direct	high	233	0.996	GCA_001042925.1_00718
GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote	cenote	CDS	11046	11396	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C0	11047	11397	GCA_001042925_1_11_16	GCA_001042925_1_11_16	-	1322044	.	.	hypothetical protein	MNGTNDYRSTMQQAAAAYLLANANQYLSSGSDRLFDACVNHLAKGLEVPQFMAEQLAQRAWDEVFAGPDPIWLGIDWGQGDDEVVYLIDTRSHCRFPIPARYLPAHLLKQRPQHTQ*	.	hypothetical_protein	C0	38932.0	0	38932	GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote_CDS_0016	cloud	direct	high	350	0.997	GCA_001042925.1_00719
GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote	cenote	CDS	11393	11686	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C0	11394	11687	GCA_001042925_1_11_17	GCA_001042925_1_11_17	-	1322044	.	pfam04606	Ogr/Delta-like zinc finger. This is a viral family of phage zinc-binding transcriptional activators, which also contains cryptic members in some bacterial genomes. The P4 phage delta protein contains two such domains attached covalently, while the P2 phage Ogr proteins possess one domain but function as dimers. All the members of this family have the following consensus sequence: C-X(2)-C-X(3)-A-(X)2-R-X(15)-C-X(4)-C-X(3)-F. This family also includes zinc fingers in recombinase proteins.	MSVYKLVCPCCHSRMRIRSSEGQTPCFRSMYAQCTNALCGATFTGSLSWDYQLSPSGLERPLLVLPMAPSKTRQLARRDLAAATNQLDLLDHVECMQ*	mmseqs_cdd	common_virus	C0	38932.0	0	38932	GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote_CDS_0017	cloud	direct	high	293	0.997	GCA_001042925.1_00720
GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote	cenote	CDS	11683	12183	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C0	11684	12184	GCA_001042925_1_11_18	GCA_001042925_1_11_18	-	1322044	.	PFAM:PF06892.10	CII-like-transcriptional-activator	MATALGGHQKMKRPLLETRRQVVSAIIGAYPGGRECAAARLGLDLKKFDNHAYENAGSKPLSDDQLLLLEQETGTSHFPEYVAHLYGGMFVQMPDPAQLDNLDLYARGVATAIRRGEVDRIIAEALRDGEIDEAELAEIIVAHRQHLAARHAEVGAVITLHRRVKA*	phrogs_hmm	nonviral_gene	C0	38932.0	0	38932	GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote_CDS_0018	cloud	direct	high	500	0.998	GCA_001042925.1_00721
GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote	cenote	CDS	12183	12395	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C0	12184	12396	GCA_001042925_1_11_19	GCA_001042925_1_11_19	-	1322044	.	TIGR04111	phage-associated protein, BcepMu gp16 family. Members of this protein family occur in Burkholderia phage BcepMu, Pseudomonas phage B3, and Burkholderia phage KS10, and many bacterial putative prophage regions. The member from Burkholderia phage BcepMu is named gp16. Homology suggests DNA-binding activity. [Mobile and extrachromosomal element functions, Prophage functions]	MHNAYPTEQACEKARQHLASQGLSARQWAVKNNLTPSTVYAVLNRQKKCLRGEAHRAAVLLGIKDGVIAQ*	mmseqs_cdd	nonviral_gene	C0	38932.0	0	38932	GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote_CDS_0019	cloud	direct	high	212	0.995	GCA_001042925.1_00722
GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote	cenote	CDS	12450	12821	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C0	12451	12822	GCA_001042925_1_11_20	GCA_001042925_1_11_20	+	1322044	.	COG1396	Transcriptional regulator, contains XRE-family HTH domain [Transcription]. 	MESQAHLETYVGIGERLKEERERLGMNQTDFAAQLNVSKNSQYNYEKGERSPDALYLAAADAFGVDVLYVITGRRLPAELDALSQSELDVLGYMTSMDEADRAAYVRMGRALSEAAATRPTKK*	mmseqs_cdd	nonviral_gene	C0	38932.0	0	38932	GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote_CDS_0020	.	unmatched_CDS	none	0	0	.
GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote	cenote	CDS	12971	13087	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C0	12972	13088	GCA_001042925_1_11_21	GCA_001042925_1_11_21	+	1322044	.	.	hypothetical protein	MDKPIDPVVLTALLICLSQMSEQDQLDLLRLACAYRDR*	.	hypothetical_protein	C0	38932.0	0	38932	GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote_CDS_0021	cloud	direct	high	116	0.991	GCA_001042925.1_00723
GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote	cenote	CDS	13140	13490	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C0	13141	13491	GCA_001042925_1_11_22	GCA_001042925_1_11_22	+	1322044	.	.	hypothetical protein	MNWLKGTAASVGLMVSCAAVADSAAQVELMDNLHQRMLDALQASSVDQVTEVFGDLDRYRPGIRSSANEICFKAYEALGWVLSDLVVQADMDDPLPELKGHQMDYERKRLACAAGA*	.	hypothetical_protein	C0	38932.0	0	38932	GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote_CDS_0022	cloud	direct	high	350	0.997	GCA_001042925.1_00724
GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote	cenote	CDS	13504	14193	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C0	13505	14194	GCA_001042925_1_11_23	GCA_001042925_1_11_23	+	1322044	.	.	hypothetical protein	MDILESIKSNFKDRIESPLSGAFCVSWILWNYKFFVVIFSNMEPGAKFNYIEQSLWNPWYVALIFFFFGPLATALFYIFIYPVPARWALKFSLESKRDIQEIRLAAEGKRPISEEEAMELRVKYIHKADDLENQLKNQIEIARAATAREREVKDSWATTLAELERVKEDFKYPPDSAILVRTLERQISSLNTDLSNEKDMNLDLRRQIGKLDEQILRYRMALDEKPSGS*	.	hypothetical_protein	C0	38932.0	0	38932	GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote_CDS_0023	cloud	direct	high	689	0.999	GCA_001042925.1_00725
GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote	cenote	CDS	14275	15546	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C0	14276	15547	GCA_001042925_1_11_24	GCA_001042925_1_11_24	-	1322044	.	PDB:3D37_A	Tail-protein	MIDAALARVTGYLTSAVDQLQRDAGYPVPVFRLTVDGNDIAQLISPRLIALDLTDNRGLEADQLSVTLSDHDGLLAIPPRGAVLHLWLGWSDSGLVDKGTYTVDETEHSGAPDVLSIRARSADLRKGLKVKRERSWSSPKTLGDVLTDIALGNNLKPVLAPALAGLPILQLDQANESDANLLTRLGEDFDAVATVKAGCLLCLPAGGGKTASGLALPHINLTRQDGDQHRYLQADRDSYDGVRAYFYDVNSAKKQEAIAGAKGDNLKDLRHTYSDRQSALRAARAEWNRLQRGSATLSYVLAKGRPDLIPELTYTLQGVKTSIDAIIWYGGNVQHSLSADGGYITSLEMESKLPEDLVSDLADDTGGDYTGIIAYYRDEKSGTEKTITAGDQSKPRRLRYLYSTKASAKRAVDREWKRLLASR*	common_virus_hmm	common_virus	C0	38932.0	0	38932	GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote_CDS_0024	cloud	direct	high	1271	0.999	GCA_001042925.1_00726
GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote	cenote	CDS	15543	15983	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C0	15544	15984	GCA_001042925_1_11_25	GCA_001042925_1_11_25	-	1322044	.	COG3499	Phage protein U  [Mobilome: prophages, transposons]. 	MMLSLGMFVFSLHTLAYQEFQRQTEWRHASSSRIGAQPARQFVGRGDDAITLPGVLLPELAGSALSLDVLRQMADTGSAWPMVEGTGRIYGLWVIERVTETRTLFFADGTPRRIEFSLELKRIDDGRTDLLGSVLGTAGNLLRRIL*	mmseqs_cdd	nonviral_gene	C0	38932.0	0	38932	GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote_CDS_0025	cloud	direct	high	440	0.998	GCA_001042925.1_00727
GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote	cenote	CDS	15989	18703	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C0	15990	18704	GCA_001042925_1_11_26	GCA_001042925_1_11_26	-	1322044	.	PFAM:PF10145.8	minor-tail-protein	MANDLQLRVLLSAIDRATAPLRRIMQGSDATARALKATRERLKQLNAQQSDVRAFRTQRGALEQVSTALAAQQARVKALAQQMATAGNPTRALTRDYNRAIREAGFLKQQHLQQSQALQQLRTRLSNAGISTRNLGQHERDLRAQIQAANGAINSQAQRLRNLSQQQERLTHARNTYSRGIQSAAALAGTGMAARATGMYTGDKLRQMLGVGYEFDATMSATQAVTRIERKDDPQMQALRQQARTLPLSSKFTDKEVAQGQYFLGRTGYNAKQILGAMPGMLNLAAAGDMDLGDTADIASNIQTAMGIPAEKMDQVADVLTAAFTRNNVDIRMLGDSLKYSAGVGREYGQSLETVTTATALLGNAGVQGSMAGTSMRSVLTRLGTSKAVAKLGVQTKDANGNMRDMLDILKDINKKTAGMGNVQRGAIFKDIAGQYAVTSFGTLMRAVEGGQFQTMRESLNNSEGEAARVAATQLDNLKGDMTMLHAALENISVELFDKNSPWLRELAADLSHLLHNVGEFLKANPQVSKGIVITVAAFSALMATVGSLAITLAGILGPMIAVRFMLGTIGIRLPGLIGLLKLLFAPIRMLAGLLIGPLVTALRVVSIALWGLAANPVVLAIAAVVAVLAAAAYLIYRNWDAVKAYLLGMWEEIQAGLNGGIGGIIRILLDFNPLGLMYRAFAGVLGYLGIDLPARFSDFGNMIVQGLVNGLLAGLGQIKRAVQRVGGAAIDWFKDKLGIHSPSRVFADLGGFTMAGLTQGLGAGQAGPLGVIARLGQGLVSAGRQAVAGLDGEFARGPRPAITPPTFDQPLLAMLGALGKSAGAIGALVLGASAPAQAITIDNRPPVSSAPAAISVGGDTYYITIQAGAGSDTADLKRTLSQLLDERERNKAARLRARLQDRE*	hallmark_hmm	common_virus	C0	38932.0	0	38932	GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote_CDS_0026	cloud	direct	high	2714	1.0	GCA_001042925.1_00728
GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote	cenote	CDS	18693	18812	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C0	18694	18813	GCA_001042925_1_11_27	GCA_001042925_1_11_27	-	1322044	.	pfam06528	Phage P2 GpE. This family consists of several phage and bacterial proteins which are closely related to the GpE tail protein from Phage P2.	MADLAVTFHWAPDHMDRLSLTELMEWRERARVRSSADGE*	mmseqs_cdd	common_virus	C0	38932.0	0	38932	GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote_CDS_0027	cloud	ambiguous	low	12	0.1	GCA_001042925.1_00728
GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote	cenote	CDS	18821	19150	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C0	18822	19151	GCA_001042925_1_11_28	GCA_001042925_1_11_28	-	1322044	.	PFAM:PF10109.8	tail-assembly-chaperone-protein	MKTEQTPADLQNAPDNVVTLDQPIKRGAQSIESLTLRKPSSGELRGLHLLDLLQFDVAATMKILPRISQPTITEPEAAGMDPADLLACGQVIAGFLLQKRAKAAASLIA*	hallmark_hmm	common_virus	C0	38932.0	0	38932	GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote_CDS_0028	cloud	direct	high	329	0.997	GCA_001042925.1_00729
GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote	cenote	CDS	19205	19720	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C0	19206	19721	GCA_001042925_1_11_29	GCA_001042925_1_11_29	-	1322044	.	PFAM:PF04985.13	tail-tube-protein	MAMPRKLKNMNLFNDGGSYQGLVKSCTLPPLARKMEPFRGGGMNGPVKADLGHDDDGIQFEWTVGGLELTVLKQYGAVSASGVMLRFAGAYQQDDTGAVTSVEIVVRGRHETIEMGDAQPGEDTEHKITTTCSYYKLVVNGEEVIEIDLLNFVEKVNGKDLLEAQRKAIGL*	hallmark_hmm	common_virus	C0	38932.0	0	38932	GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote_CDS_0029	cloud	direct	high	515	0.998	GCA_001042925.1_00730
GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote	cenote	CDS	19777	20952	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C0	19778	20953	GCA_001042925_1_11_30	GCA_001042925_1_11_30	-	1322044	.	PDB:3J9Q_C	sheath-tube	MAADQYHHGVRVQEINDGTRPIRTIATAIIGLVATAEDADATAFPLDTPVLITNVQAAIGKAGTSGTLPASLQAIADQANAATVVVRVKPGEDEAATNSAVIGGVSADGKYTGMKALLAAKARLGVVPRILGVPGLDTQPVATALIAIAQQLRAFAYVSASGCKTKEEAIAYRENFAAREAMVVWPDFLTWSTVVNQTVPAPAVAQALGLRARIDQEVGWHKTLSNVAVNGVTGISADVFWDLQSPSTDANYLNENEVTTLVQEGGFRFWGSRTCSDDPLFAFENYTRTAQVLADTIAEAHMWAVDKPMHPSLVRDILEGVNAKFRELKGLGLIIDAQAWYDPNVNDKDTLKAGKLRITYDYTPVPPLEDLTFFQKITDSYLVDFASRVNA*	hallmark_hmm	common_virus	C0	38932.0	0	38932	GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote_CDS_0030	cloud	direct	high	1175	0.999	GCA_001042925.1_00731
GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote	cenote	CDS	21043	21489	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C0	21044	21490	GCA_001042925_1_11_31	GCA_001042925_1_11_31	-	1322044	.	PFAM:PF02413.16	tail-fiber-assembly-protein	MFFYCPKTGGFYSPEVHGEQMPAESELWPLTDEEYEALLDAQGQGLLIVAGKDGQPVATPPPPLGDEALATIERDWRDRQLDDTDALVARHRDELEVGTTTLSTEQYQALQAYRRQLRDWPESGEFPLAEHRPAAPDWLEALFADGIL*	phrogs_hmm	hypothetical_protein	C0	38932.0	0	38932	GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote_CDS_0031	cloud	direct	high	446	0.998	GCA_001042925.1_00732
GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote	cenote	CDS	21498	23786	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C0	21499	23787	GCA_001042925_1_11_32	GCA_001042925_1_11_32	-	1322044	.	PFAM:PF12571.7	tail-collar-fibre-protein	MTTPKYGGLLTDIGAAALIAASEAGKKWQPTHMLIGDAGGAPGETADPIPSAAQTKLIRQRYRAQLNRLFVSEQSANVLVAELVLPMAIGGFWIREIGLEDADGKFVAVANCPPSFKASVESGSARTQTIRVQIILSGMEHVELIIDDGIVYATQDWVTAKVAADFKGRKVLAGNGLVGGGDLSADRTIALPASGVGAGTYRAVTVNANGIVTAGNNPTTLGGYGITDALHASEAVTTPTANKLLRLNAAGLLPASITGNAATASRLAAPITLSASGDATWSARFDGATNVNGVLTLANSGVTAGTYAKVTVNAKGLVTGASGLVASDIPALDAGKITSGILPAARGGTGNGIGQAATAVKLAAPRTIYLGGDASGSTTFDGSSNAGITVTLANSGVNAGSYPKVTVNAKGLVTAGGGLTAADIPALDASKIATGRLDLERLPLVSQGLATAVHTSVDPNSVVIPLVLTNHANGPVAGRYYYIQTMFYPTVEGNATQIATGYAGVADMYVRYAYASPATTDSSKREWSAWVRCDLGGAFAHAPDGELGGYVNLDSMIASGWWHQPFTANAKNGENYPVGEAGLLTVHAPTASMIYQTYRGYAAGGLYWRCRYNGTWSAWYRAWDSGNFNPANYVAKSEYSWASLPGKPSNFPPSAHVHSAASRGVSGWYKNNDTGVIFQWVNLSIGDHPGGVIDRVVTFPIAFPNACLHVVPTVRENGRPAIPASTVTVAEKARTATNCTIVSSEYIGNVQNFGINVFAIGY*	hallmark_hmm	common_virus	C0	38932.0	0	38932	GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote_CDS_0032	cloud	direct	high	2288	1.0	GCA_001042925.1_00733
GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote	cenote	CDS	23788	24324	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C0	23789	24325	GCA_001042925_1_11_33	GCA_001042925_1_11_33	-	1322044	.	PFAM:PF09684.9	tail-protein	MPSLLPRNATELERLAAEALAQIERVPIPLRQLWNPSTCPVALLPYLAWAFSVDRWDSTWPERVKRQVIRDAYLVHSHKGTLSALRRVVEPVGSLTDILEWWQQTPAGVPGTFEITVDVSDNGLDEETVLELERLLDDVRPVSRHLTRLDLRITPDILARHGLATIDGDTLEISPWKQ*	hallmark_hmm	common_virus	C0	38932.0	0	38932	GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote_CDS_0033	cloud	direct	high	536	0.998	GCA_001042925.1_00734
GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote	cenote	CDS	24324	25238	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C0	24325	25239	GCA_001042925_1_11_34	GCA_001042925_1_11_34	-	1322044	.	CDD:PHA02568	baseplate-assembly-protein	MTTNFVAIDLSQLPPPHAVEQLDYEQILAERKAYAISLWPEDQQAEISARLALESEPLTKLLEENAYREMLWRQRVNEAALANMLASAQGADLDQLAANYNVKRLVIQPGDPSKVPPVPELLESDDSLRERAQMAWEGLSTAGPRNSYIFHARAADGRVGDASAVSPSPAVVVVTVQAAQGNGSAPADLLAIVDAYLNDADRRPVADRLTVQSAQVLEYRVDATLYLATIGPESEPILDAARARLTAYVHQRRRLGMEVSESAVHAALHVEGVRKVTLSNWSDIAATPAQAPYCTGITLTLGDE*	hallmark_hmm	common_virus	C0	38932.0	0	38932	GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote_CDS_0034	cloud	direct	high	914	0.999	GCA_001042925.1_00735
GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote	cenote	CDS	25235	25579	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C0	25236	25580	GCA_001042925_1_11_35	GCA_001042925_1_11_35	-	1322044	.	PDB:5IW9_B	Baseplate-wedge-protein	MNAHTGGAIDRLAHIRQSIADILTTRIGSRVMRREYGSQLPELIDAPFNDTTRLQVYAATAMALMRWEPRIRLSRVQITGQNLAGQVLMEINATLVDSNEPHNLSIPLQMGASA*	hallmark_hmm	common_virus	C0	38932.0	0	38932	GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote_CDS_0035	cloud	direct	high	344	0.997	GCA_001042925.1_00736
GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote	cenote	CDS	25576	26148	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C0	25577	26149	GCA_001042925_1_11_36	GCA_001042925_1_11_36	-	1322044	.	CDD:TIGR01644	phage-baseplate-assembly-protein-V	MADFATLSRMIENLIRLGTIAAVDHAAQRVRVLTGDLLTGWLPWASPRAGADREWNAPTLNEQVLLFSPSGQTANGVVLTGLFSDLIPPNGDRDALHRTTYRDGAVIEYDSAAHHLRAVLPAGGTTELISDGGIRIVGDITHQGDYIQTGNQTVTGKVTVSVDVIAKGISLVGHTHGGVMPGGATTGKPQ*	common_virus_hmm	common_virus	C0	38932.0	0	38932	GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote_CDS_0036	cloud	direct	high	572	0.998	GCA_001042925.1_00737
GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote	cenote	CDS	26326	26754	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C0	26327	26755	GCA_001042925_1_11_37	GCA_001042925_1_11_37	+	1322044	.	PFAM:PF10078.8	HTH-DNA-binding-protein	MNSDSAKRGELARKARSVLGASTAEAAQLVHVSKRTWELWESGQREMPEASWELFVYKITHGITPTDERELLVVVDDNQAPLDVVSSDTFLNLREQGQGEYEISSMAVSRETGRQYIHRTRFKRKPYNEHVLKFAERHRQWD*	phrogs_hmm	hypothetical_protein	C0	38932.0	0	38932	GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote_CDS_0037	cloud	direct	high	428	0.998	GCA_001042925.1_00738
GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote	cenote	CDS	26764	27093	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C0	26765	27094	GCA_001042925_1_11_38	GCA_001042925_1_11_38	-	1322044	.	PFAM:PF05069.12	Virion-morphogenesis-family	MAQRNPDGSAYEPRKKRELRGKQGRIRRKIKMFQKLRTVRYLRAKGDAQAITVSFAGRIARIARVHQYGLRDRAEPGAPEVQYAQRSLLGFTAADLDSIRSGVLKHLPP*	hallmark_hmm	common_virus	C0	38932.0	0	38932	GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote_CDS_0038	cloud	direct	high	329	0.997	GCA_001042925.1_00739
GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote	cenote	CDS	27215	27751	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C0	27216	27752	GCA_001042925_1_11_39	GCA_001042925_1_11_39	-	1322044	.	PFAM:PF06891.10	tail-completion-protein	MNKPDSLKAHLLAAVPELRNNGDRLVIFIDNGRVRSTSAESLSFEYAYDLQVILTDFAGHPDSVFLPLLGWLLVNQSDLLANLTKVQDGITFEADMLDRSKVDLGIVLPLTERVVVKRREDGRYDVSHPEEPQLTEAIEVDGPMQMLANGELLAEWTPPTPTEAVMLETPQIRRPANG*	hallmark_hmm	common_virus	C0	38932.0	0	38932	GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote_CDS_0039	cloud	direct	high	536	0.998	GCA_001042925.1_00740
GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote	cenote	CDS	27781	28329	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C0	27782	28330	GCA_001042925_1_11_40	GCA_001042925_1_11_40	+	1322044	.	.	hypothetical protein	MSTFAAHSAQARPIRSTSVCRPPLSFGAADSRLQGVTAGQPLMISGRSGDSGALLQPTSSIRQRLVSPLAIGFIVTFQVLDQAFADGQRLAQLLPLLVQVGLGLALAGKGGLEGRDGAGLAGKLGVAGFPRQLGLGQAGLRQVDALLLYPQEQAEGTEQGGAVQHLAQKAHALASAQLACCS*	.	hypothetical_protein	C0	38932.0	0	38932	GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote_CDS_0040	cloud	direct	moderate	462	0.842	GCA_001042925.1_00741
GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote	cenote	CDS	28290	29096	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C0	28291	29097	GCA_001042925_1_11_41	GCA_001042925_1_11_41	-	1322044	.	PDB:5NM7_A	AP3-endolysin	MTLRYGDRSQEVLQLQRRLNTWAGANLYEDGHFGAATEDAVRAFQRSHGLVADGIAGPKTLSALGGADCSHLLQNADLVAAGARLGLPLATIYAVNQVESNGQGFLGNGKPAILFERHIMYRRLAAHDQVTADQLAAQFPALVNPRPGGYAGGTAEHQRLANARQIDDTAALESASWGAFQIMGFHWQRLGYISVQAFAESMGRSESAQFEAFVRFIDTDPALHKALKARKWADFARLYNGPDYKRNLYDTKLARAYEQHANCAEASA*	common_virus_hmm	common_virus	C0	38932.0	0	38932	GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote_CDS_0041	cloud	direct	high	806	0.999	GCA_001042925.1_00742
GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote	cenote	CDS	29093	29365	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C0	29094	29366	GCA_001042925_1_11_42	GCA_001042925_1_11_42	-	1322044	.	pfam05449	Putative 3TM holin, Phage_holin_3. This is a family of putative proteobacterial phage three-transmembrane-domain holins.	MLMTTVPLIAALAYIAAALRLVCYQRCGARFRRSVSLLASLLGASMAICGLEILLYRPPVSIWHAIVAALLCLLIFRSRGNVAALLRPSA*	mmseqs_cdd	common_virus	C0	38932.0	0	38932	GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote_CDS_0042	cloud	direct	high	272	0.996	GCA_001042925.1_00743
GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote	cenote	CDS	29367	29720	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C0	29368	29721	GCA_001042925_1_11_43	GCA_001042925_1_11_43	-	1322044	.	PFAM:PF16931.4	holin	MADLTTTATAGAIMGLGLGVTLPVDGGMLFGALLGAWLATGTKQDLKAWSRLLSLILPTCVGYLFADVALARVPWLTNLAFSAFVCALVVIPLSLKAVAWVDKVDFDDLWRRIRGGR*	phrogs_hmm	hypothetical_protein	C0	38932.0	0	38932	GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote_CDS_0043	cloud	direct	high	353	0.997	GCA_001042925.1_00744
GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote	cenote	CDS	29745	29957	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C0	29746	29958	GCA_001042925_1_11_44	GCA_001042925_1_11_44	-	1322044	.	COG5004	P2-like prophage tail protein X  [Mobilome: prophages, transposons]. 	MAAVAIAHQNDTVEALCWRHYGRTAGVTEAVLEANHGLADHGPTLPPGLKVTMPDIPTAAPERQMVNLWD*	mmseqs_cdd	nonviral_gene	C0	38932.0	0	38932	GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote_CDS_0044	cloud	direct	high	212	0.995	GCA_001042925.1_00745
GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote	cenote	CDS	29957	30418	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C0	29958	30419	GCA_001042925_1_11_45	GCA_001042925_1_11_45	-	1322044	.	PFAM:PF05926.10	head-completion-protein	MSGFIANGPVPGGHINSDPFWPTIELEHVRANLRIDSSVDPARLEVAVIAAVISVNRELRAWRLEKIAAGYAELAQVPSDKVRDTSELVQLYLRAVQSATAAEVAERYRWYDTTTSGNDKAQDIATTIDDYRRDQRWAIRDFLKRPRTTVELI*	hallmark_hmm	common_virus	C0	38932.0	0	38932	GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote_CDS_0045	cloud	direct	high	461	0.998	GCA_001042925.1_00746
GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote	cenote	CDS	30522	31223	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C0	30523	31224	GCA_001042925_1_11_46	GCA_001042925_1_11_46	-	1322044	.	PFAM:PF05944.11	small-terminase	MAFSPAKAHFLRVTAAQEAAATAPHQGMEGANAYELQLAQLYQDRSRLKNIQSGEGKAALKVELLPAYQPYISGVLQAGKGAQDEVVTTVMLWRIDAGDYAGALDIADYVLAHDLVMPDRFARTSGCVIAEEIAEAALKAQKTGGSFDLATLHRTLLLTDQADMPDEARAKLYLAAGHATLEGLSVESPGQPGQVQAGIDLLKRAIQLHDKCGGKKDLEAAERLQKKLTASGG*	hallmark_hmm	common_virus	C0	38932.0	0	38932	GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote_CDS_0046	cloud	direct	high	701	0.999	GCA_001042925.1_00747
GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote	cenote	CDS	31229	32245	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C0	31230	32246	GCA_001042925_1_11_47	GCA_001042925_1_11_47	-	1322044	.	PFAM:PF05125.11	Major-Capsid-protein	MRNETRKQFDAYLAQLAKLNGVNSAVQTFAVEPSVQQKLEQRIQESSEFLKQINVYGVDELQGEKIGIGVSGTIASRTDTTGDGVRKPRDVSALDNQRYECKHTDFDTAITYAMLDAWAKFPEFQALLRDAILKRQALDRLMIGFNGTSAAATTNRAANPLLQDVNIGWFQQYRNNAPARVLKDGKTAGKVVVGNGADADYKNLDALVFDVVSSLIDPWHRRDPGLVVILGRELVHDKYFPMVNKDQPATEKIATDLILSQKRMGGLPPVEVPYVPEKGLMVTTLKNLSLYWQIGGRRRYLKEVPEKNRIENYESSNDAYVVEDYGLGCVVENIEVAE*	hallmark_hmm	common_virus	C0	38932.0	0	38932	GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote_CDS_0047	cloud	direct	high	1016	0.999	GCA_001042925.1_00748
GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote	cenote	CDS	32281	33102	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C0	32282	33103	GCA_001042925_1_11_48	GCA_001042925_1_11_48	-	1322044	.	PFAM:PF05929.10	capsid-scaffolding-protein-serine-peptidase	MKKFRSKWFRIAVEGATTDGRNIERDWIEQMAAQYDPNTYGARINCEHIKWAWPAGEFGAYGDVLACKAEEIDINGQKKLALFAQLEPNQALLELNKQRQKVYTSVEIDPKFADTGKAYLVGLAITDSPASLGTEALSFSAKNGTLASRKTNPDTLFSAAEEGTLEFEEYEDKPSVGAALFTKVKELLKGKEARTQAEFGQVGEAVEAIAEHSRDLGEQLGEQKKQTQQLASQLDKVTKELEDLKSTLDSTRDHSQQQRPPVTGGGSVALTDC*	hallmark_hmm	common_virus	C0	38932.0	0	38932	GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote_CDS_0048	cloud	direct	high	821	0.999	GCA_001042925.1_00749
GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote	cenote	CDS	33237	35018	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C0	33238	35019	GCA_001042925_1_11_49	GCA_001042925_1_11_49	+	1322044	.	PDB:4IDH_A	Large-Terminase	MGGSICAMNAAVEIPIRDNRRQAKFLYWMGWRVCDIADHLGEKDKTLHSWKDRDGWDRADSVERIGGALEARLVQLILKDGKTGGDYKEIDLLHRQLERQARIQRYQGGGTETDLNPELAKRNEGPKRKPKRNDISEELTEKLVEAFLDGCFDYQKDWYRAGNQRTRVILKSRQIGATFYFAREALIDALETGRNQIFLSASKAQAHIFKAYIQAFARDAVGVELKGDPIILPNGAELHFLGTNARTAQGYHGNFYFDEFFWTFKFKELNKVASGMAMQKRYRRTYFSTPSSMAHEAYTFWTGERFNKGKPAADRIKIDVSHDALQQGRLCEDRIWRQIVTILDAEARGCDLFDIDELRLEYDAEAFQNLLMCQFVDDGASIFPLTMLQPCMVDSWDLWSEDYKPFALRPFGDRQVWLGYDPAETGDTAGLVVVAPPAVPGGKFRVLERHQFRGKDFAEQAEFIRKVTQRYWVTYIGVDTTGMGSGVAQLVRQFFPGVRTFSYSPEVKTQLVMKAWSVIKNGRLEFDAGWTDLAQALMAIRKTITAGGRQFTYTAGRNDNTGHADLAWALFHALQNEPLEGQTPANTGRMEIF*	hallmark_hmm	common_virus	C0	38932.0	0	38932	GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote_CDS_0049	cloud	direct	high	1781	0.999	GCA_001042925.1_00750
GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote	cenote	CDS	35018	36073	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C0	35019	36074	GCA_001042925_1_11_50	GCA_001042925_1_11_50	+	1322044	.	CDD:PHA02536	portal-vertex-protein	MSKRRSHRRQQPVTVQSAQEGEFIPRQGGRAEAFTFGDPMPVLDGRGILDYLECWSNGRWYEPPLSMEGLAKAVGSSVYLQSGLKFKRNMLAKTFIPHRLLSRATFEQFSLDWLTFGSAYLEQPRSRLGTRMPLQAPLAKYMRRGTDLETFYQVRSWKDEHEFEKGSVIQLREADISQEIYGVPEWYCALQSALLNESATLFRRKYYNNGSHAGFILYMTDAAQNEEDIDALRTALKTAKGPGNFRNLFVYAPNGKKEGIQLIPVSEVAAKDEFGSIKNISRDDQLAGLRVYPQLMGVVPQNAGGFGSISDAAVVWASLELEPMQARLQQVNELIGEEVVRFTALGLPSLR*	hallmark_hmm	common_virus	C0	38932.0	0	38932	GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote_CDS_0050	cloud	direct	high	1055	0.999	GCA_001042925.1_00751
GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote	cenote	CDS	36144	36302	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C0	36145	36303	GCA_001042925_1_11_51	GCA_001042925_1_11_51	-	1322044	.	.	hypothetical protein	MSIFTVKKPGTTTKFSEFVRNASSEEKKRVYKVVMKKSTERQCKVLAAAAAG*	.	hypothetical_protein	C0	38932.0	0	38932	GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote_CDS_0051	.	unmatched_CDS	none	0	0	.
GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote	cenote	CDS	36311	37036	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C0	36312	37037	GCA_001042925_1_11_52	GCA_001042925_1_11_52	-	1322044	.	pfam06414	Zeta toxin. This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.	MPLSAEEQAICDGAIAFARANKKSIAKRLTSPQIYAREENPVSVFMAGSPGAGKTEASIELLSQFDEIGSKVLRIDPDELRSEFEGYTGGNSWLFQPAVSILVEKIHDLALDQRQSFLLDGTLANYEIAERNIQRSLRKGRTVLILYVYQRPDLAWEFVQARERVEGRKIPIEEFVRQYFAARDVVNRLKQRFGGSIEVDLLLKNNDGSHRVYEANIDRIDSHVPETYDRASLEQMLLQRG*	mmseqs_cdd	nonviral_gene	C0	38932.0	0	38932	GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote_CDS_0052	cloud	direct	high	725	0.999	GCA_001042925.1_00752
GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote	cenote	CDS	38029	38931	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C0	38030	38932	GCA_001042925_1_11_53	GCA_001042925_1_11_53	-	1322044	.	PFAM:PF02566.18	esterase/lipase	MRPETAIIEIHGQYRIHTEFYGNPAAQQTIILVNGSLSTTASFAQTVKYLQPHYNVVLYDQPYAGQSKPHNENRTPISKECEARILLELIERFRADVVMSFSWGGVATLLALAQRPGRIRRAVVNSFSPQLNPAMLDYLHRGLDYLAACDRTQVGNLVNETIGRYLPQLFKRYNFRHVSSLDEHEYHQMHFHIREVLRLNADSYTESFAGIEIPVLFMNGELDIYTTPHEARQFGQLIRGAEFHTIRNAGHFIDVEHKAAWQQTQDALLAFLRPQRTQPLNPIYRPQPNGASVPLAALAS*	phrogs_hmm	hypothetical_protein	C0	38932.0	0	38932	GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote_CDS_0053	persistent	direct	high	902	0.999	GCA_001042925.1_00754
GCA_001042925.1|JYLC01000001.1@region_528544_543833@tool_cenote	cenote	CDS	528543	529142	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C28	1	600	GCA_001042925_1_11_526	GCA_001042925_1_11_526	-	1322044	.	PF06930.12	Protein of unknown function (DUF1282)	MIHHVWGLFTHPDQEWQEIRGEEESISHMYLTHILILAAIPAISAYIGTTQVGWVVGGGDPVKLTQASALQMTVLTYLAMLAGVAVMGAFIHWMARTYDANPSLTQCIVFAAYNATPLFIAGLAALYPHLWLGMIVGVAAISYTVYLLYVGIPTFMNIHKDEGFLFSSSVLAVGLVVLVAMIALSVILWGSGVGPEYTS*	hhsuite_tools	hypothetical_protein	C28	15290.0	528543	543833	GCA_001042925.1|JYLC01000001.1@region_528544_543833@tool_cenote_CDS_0001	persistent	direct	high	599	0.998	GCA_001042925.1_01230
GCA_001042925.1|JYLC01000001.1@region_528544_543833@tool_cenote	cenote	CDS	529301	529894	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C28	759	1352	GCA_001042925_1_11_527	GCA_001042925_1_11_527	-	1322044	.	PDB:1GH6_A	Large-T-antigen	MTPDLDHRLDLAGQILCLLREHPEGLSEYQLIQLLKARHSTHIPHRELADKLVLFRTHFLLFNALYHLRDHLWAEHEAHLEISPLSLRLHPYVDGTQALEQGDPLRDYYLDLRHLGETSEADVERLLQSFWTRMQGSEEKAAALALFELEGAVDYPAIKLRYRQLVSQHHPDRGGSTARLQSINKAMEILQRYYSRP*	rep_hall_hmm	common_virus	C28	15290.0	528543	543833	GCA_001042925.1|JYLC01000001.1@region_528544_543833@tool_cenote_CDS_0002	persistent	direct	high	593	0.998	GCA_001042925.1_01231
GCA_001042925.1|JYLC01000001.1@region_528544_543833@tool_cenote	cenote	CDS	530434	530601	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C28	1892	2059	GCA_001042925_1_11_528	GCA_001042925_1_11_528	+	1322044	.	.	hypothetical protein	MQPNDEKTAELCLVKQKAKKRSKLLNACFSLVKLLVIWLPLIDKFWSKIASWLDE*	.	hypothetical_protein	C28	15290.0	528543	543833	GCA_001042925.1|JYLC01000001.1@region_528544_543833@tool_cenote_CDS_0003	.	unmatched_CDS	none	0	0	.
GCA_001042925.1|JYLC01000001.1@region_528544_543833@tool_cenote	cenote	CDS	530923	531900	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C28	2381	3358	GCA_001042925_1_11_529	GCA_001042925_1_11_529	+	1322044	.	cd03487	RT_Bac_retron_II: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons. The polymerase reaction of this enzyme leads to the production of a unique RNA-DNA complex called msDNA (multicopy single-stranded (ss)DNA) in which a small ssDNA branches out from a small ssRNA molecule via a 2'-5'phosphodiester linkage. Bacterial retron RTs produce cDNA corresponding to only a small portion of the retron genome.	MQPGKSKRVERKPDNSLELDQCRLYKIGSEKRLAEILGLSLQDLRLLLRSESNYKKFTISQSENPFTKKPRKKRAVQVPMNRLRRVHAKIFSFLRRVKYPDYVQGAVKGRSYQTNAAFHARSRQTATFDISKFYESTKYHLVHEFFLGALKCPTDIAGKLARLVTCDGVMPTGSLLSPLLSFWVAKGMFDECAALAETYDLKFTCYIDDLTFSGDRIPRELKSKLKIIVSRYGYKLAIEKTKVFRFGAPAHITGVVKLNGELVVPFARLMAARRISDALDGKSPDYGYTKNELKRKLAGTIAEAATIDGNRFSKWAAFAQKEARD*	mmseqs_cdd	nonviral_gene	C28	15290.0	528543	543833	GCA_001042925.1|JYLC01000001.1@region_528544_543833@tool_cenote_CDS_0004	cloud	direct	high	977	0.999	GCA_001042925.1_01232
GCA_001042925.1|JYLC01000001.1@region_528544_543833@tool_cenote	cenote	CDS	532857	533072	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C28	4315	4530	GCA_001042925_1_11_530	GCA_001042925_1_11_530	+	1322044	.	PFAM:PF11112.7	Cox-like-excisionase-and-repressor	MEVEEIKAQDLRAAPPVLPWRDFANWIGMGEDHETVRGWIRKGYLPAHKIGKHVMVNVALFTHQLMEKEEF*	phrogs_hmm	hypothetical_protein	C28	15290.0	528543	543833	GCA_001042925.1|JYLC01000001.1@region_528544_543833@tool_cenote_CDS_0005	cloud	direct	high	215	0.995	GCA_001042925.1_01233
GCA_001042925.1|JYLC01000001.1@region_528544_543833@tool_cenote	cenote	CDS	533072	533596	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C28	4530	5054	GCA_001042925_1_11_531	GCA_001042925_1_11_531	+	1322044	.	.	hypothetical protein	MLSGNPIHALLTFLEGYLLQTAQHPSEPFDRALMLIDGLMDAGYLSQPEESYLTDLRVEALAWGRARQDKEEADHVVSELLAPNPRPGLRLLCVLVRKAGHPIAQPVAVSGLPAPWAALSGRWPLALPSPFLLRETRPVPASAEVLARCVRQRETHALCARARSIPTGGLTHAR*	.	hypothetical_protein	C28	15290.0	528543	543833	GCA_001042925.1|JYLC01000001.1@region_528544_543833@tool_cenote_CDS_0006	cloud	direct	high	524	0.998	GCA_001042925.1_01234
GCA_001042925.1|JYLC01000001.1@region_528544_543833@tool_cenote	cenote	CDS	533586	533963	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C28	5044	5421	GCA_001042925_1_11_532	GCA_001042925_1_11_532	+	1322044	.	.	hypothetical protein	MLADTLKALLLFCLIQAARTVADPVKGRAPGSSEQLYRSGERKHGRSAPLNASPLKQPPLGSVGQLLRPALPSPRRQERDDKGRALGVALRVPRGSVPLGRRRRRCDRDRYPNGLRRTPVVGLVR*	.	hypothetical_protein	C28	15290.0	528543	543833	GCA_001042925.1|JYLC01000001.1@region_528544_543833@tool_cenote_CDS_0007	cloud	ambiguous	low	12	0.032	GCA_001042925.1_01234
GCA_001042925.1|JYLC01000001.1@region_528544_543833@tool_cenote	cenote	CDS	534098	534532	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C28	5556	5990	GCA_001042925_1_11_533	GCA_001042925_1_11_533	+	1322044	.	.	hypothetical protein	MNMFATQGGVVELWVTKTDTYTSTKTGEIYASVQSIAPIPEGARGNAKGFEISEYNIEPTLLDAIVFEGQPVLCKFASVVRPTQDRFGRITNTQVLVDLLAVGGKPMAPTAQAPARPQAQSQAPRPAQQPQGQDKQDKSPDAKA*	.	hypothetical_protein	C28	15290.0	528543	543833	GCA_001042925.1|JYLC01000001.1@region_528544_543833@tool_cenote_CDS_0008	cloud	direct	high	434	0.998	GCA_001042925.1_01235
GCA_001042925.1|JYLC01000001.1@region_528544_543833@tool_cenote	cenote	CDS	534549	534641	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C28	6007	6099	GCA_001042925_1_11_534	GCA_001042925_1_11_534	+	1322044	.	.	hypothetical protein	MLRYLSLFAVGLATGYAWGWIDGLAASLPV*	.	hypothetical_protein	C28	15290.0	528543	543833	GCA_001042925.1|JYLC01000001.1@region_528544_543833@tool_cenote_CDS_0009	cloud	direct	moderate	92	0.989	GCA_001042925.1_01236
GCA_001042925.1|JYLC01000001.1@region_528544_543833@tool_cenote	cenote	CDS	534654	534905	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C28	6112	6363	GCA_001042925_1_11_535	GCA_001042925_1_11_535	+	1322044	.	.	hypothetical protein	MSGVVAVQVCTAWTSTPEGFMACRELAWQQAYLMPPEAAGYVDILVNGGFSPEAFGIGAAGVLGSFVTGLLIGWVASLLRKAK*	.	hypothetical_protein	C28	15290.0	528543	543833	GCA_001042925.1|JYLC01000001.1@region_528544_543833@tool_cenote_CDS_0010	cloud	direct	high	251	0.996	GCA_001042925.1_01237
GCA_001042925.1|JYLC01000001.1@region_528544_543833@tool_cenote	cenote	CDS	534918	535166	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C28	6376	6624	GCA_001042925_1_11_536	GCA_001042925_1_11_536	+	1322044	.	CDD:pfam05356	Filamentous-Major-Coat-protein	MKAMKQRIAKFSPVASFRNLCIAGSVTAATSLPAFAAVIDTSAVESAITDGQGDMKAIGGYIVGALVILAVAGLIYSMLRKA*	hallmark_hmm	common_virus	C28	15290.0	528543	543833	GCA_001042925.1|JYLC01000001.1@region_528544_543833@tool_cenote_CDS_0011	cloud	direct	high	248	0.996	GCA_001042925.1_01238
GCA_001042925.1|JYLC01000001.1@region_528544_543833@tool_cenote	cenote	CDS	535518	536588	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C28	6976	8046	GCA_001042925_1_11_537	GCA_001042925_1_11_537	+	1322044	.	.	hypothetical protein	MNRVNDRWVQCIVHIGVNSYSTDAVLTGDSCPSEQELDPADGACKPPPEECKEGELFPAKGPDSPVVTSGGRNYVGDGGAPSACYQSCEYGGNPSPASCYLVKGSTTTGFCNYILKGTGQNCGADSYTFAQTGDSLNPPDTPNTDPSDPNDPGCPPGWSWSGTTCVKTPTDPTDPTDPTTPGGDGDGGGDGNGGGNNNGGGNDGGTGNGGDGSGGGDGNGGGEGSGDGDGSGTGGDGNGTCDPAKENCSTGPEGPGGELKEPTPGTWDDAIATWEKKVEEAKQELKTKVKANVDQMKGAFDLNLAEGGGQLPCESMTIWGKSYSLCISDYAGQLSSLRVALLLMAALIAALILLKD*	.	hypothetical_protein	C28	15290.0	528543	543833	GCA_001042925.1|JYLC01000001.1@region_528544_543833@tool_cenote_CDS_0012	cloud	direct	high	1070	0.999	GCA_001042925.1_01239
GCA_001042925.1|JYLC01000001.1@region_528544_543833@tool_cenote	cenote	CDS	536593	536949	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C28	8051	8407	GCA_001042925_1_11_538	GCA_001042925_1_11_538	+	1322044	.	PFAM:PF10734.8	Minor-Head-Virion-Protein	MEWLSGFLDQIIAFFQWIWDFFAQGIYDFVRDGLVVATKASMYAALQTLILLIDVSYTAARELIDSLGVPQMIRSMYAALPGPIAAGLAFFGVPQALNIIMVAAATRFCMRFVPFIGR*	hallmark_hmm	common_virus	C28	15290.0	528543	543833	GCA_001042925.1|JYLC01000001.1@region_528544_543833@tool_cenote_CDS_0013	cloud	direct	high	356	0.997	GCA_001042925.1_01240
GCA_001042925.1|JYLC01000001.1@region_528544_543833@tool_cenote	cenote	CDS	536953	538227	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C28	8411	9685	GCA_001042925_1_11_539	GCA_001042925_1_11_539	+	1322044	.	PFAM:PF05707.11	Zonular-occludens-toxin-(Zot)	MSIKIHHGPNGSYKTSGAIQDDAVPALKDGRVIITNVRGFTLERAYQVFPDLPNTAEIINLDLESLEDLEKMRTWFQWAPRGAFLIFDETQLLFPKSWREKDLERFDYPGGPEAAHAADRPMGWLDAWTRHRHFNWDIVLTTPNISYIRDDIRMTCEMAYKHSNLAVIGIPGRYKEAQHDAQLNRPPADGTIIEYKRIRKQTFALYQSTATGKTQDTKAGKSLFRSPKLVLLLALLAGTIGFVWYMGPLRTIGAPAAATPADAPGDPAQAPAAPAAVAAPTRPAANSFLPPGLVPDGPAAAPVDLNAHPFADRRISILAHAYRKSRGDIYMFALDDPTGRRLELTSWQLIGSGYRVTPKGECVVELRYEEWKQTVTCTGRQPGAVASVVPAAPVAASADAPARGQSPLTIVPDSEYASRPWRHK*	hallmark_hmm	common_virus	C28	15290.0	528543	543833	GCA_001042925.1|JYLC01000001.1@region_528544_543833@tool_cenote_CDS_0014	cloud	direct	high	1274	0.999	GCA_001042925.1_01241
GCA_001042925.1|JYLC01000001.1@region_528544_543833@tool_cenote	cenote	CDS	538224	538325	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C28	9682	9783	GCA_001042925_1_11_540	GCA_001042925_1_11_540	+	1322044	.	.	hypothetical protein	MIDWEFLVPVAMGWALHHWWSVMTALAAVGVPP*	.	hypothetical_protein	C28	15290.0	528543	543833	GCA_001042925.1|JYLC01000001.1@region_528544_543833@tool_cenote_CDS_0015	cloud	direct	high	101	0.99	GCA_001042925.1_01242
GCA_001042925.1|JYLC01000001.1@region_528544_543833@tool_cenote	cenote	CDS	538456	539748	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C28	9914	11206	GCA_001042925_1_11_541	GCA_001042925_1_11_541	+	1322044	.	4CIJ_B	GST REP (E.C.5.99.1.2)	MKKVTHQNRLLLQPDGQLLDSPKGRLFVDSMTGAFTDLSGVRILRCGVDTVRQLYNGKLRPEVMALFDLSVDVVEFAGYEWSKGRIGRDSGYQYRLQNAELGLILLIKNHNIKVDTLGSHLKIEVSPHALDGADPHILQGVLDDLAAAVLSHCETNQAAVHIALDVQGWKPPRDLVDRMHCRSRRVRQISGIERIEFDGNASVYGRGETYMFGSANGLQLSIYNKTLQARATDKLDYWESVWATLNGDPFGDGDPAYNPLETVWRLEFRFHHSIVQQFSEGSRMASGEVIGCRTYEGLCPHLQGLWNYACESFKLLSRTAVYDPFWSLISQDARVQVECDPLIERTEYRRYYKTAKGFSGRNCEMFLGQFISLIARERIPAKKAIESARKLEFWHVIEDHYLAKGWTRRDLERHIHKLMCDRYLRRGYAI*	hhsuite_tools	hypothetical_protein	C28	15290.0	528543	543833	GCA_001042925.1|JYLC01000001.1@region_528544_543833@tool_cenote_CDS_0016	cloud	direct	high	1292	0.999	GCA_001042925.1_01243
GCA_001042925.1|JYLC01000001.1@region_528544_543833@tool_cenote	cenote	CDS	539748	540764	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C28	11206	12222	GCA_001042925_1_11_542	GCA_001042925_1_11_542	+	1322044	.	PDB:5C6K_B	Integrase	MAITKLEDGRWLADVEPIKGKRFRKRFKTKGEAQRFEAMVRTKHARQREWNPVQQDKRLLSELIERWYELHGHSITSGRRRKNLLLLIASRLGDPVGQRFTTADLVAFRKRELEEGALPRSINVRYSYLKTVFTELRRLGDIDYPNPLDRLKPLKPQQSVVSFLSKDQVAVLVSALRDYSTFPHLALISEVCLATGARWSEAQGLTLPMVRDGSVVFSNTKSKRVRSVPISTDLQARLEKYFAGRNRFPSCREAFARMVKRCGIVLPRGQCTHVLRHTFASHFMMNGGNILALKEILGHSSLNMTMRYAHLSPEYLRDAIRLNPLADFDSSSTLAETS*	common_virus_hmm	common_virus	C28	15290.0	528543	543833	GCA_001042925.1|JYLC01000001.1@region_528544_543833@tool_cenote_CDS_0017	cloud	direct	high	1016	0.999	GCA_001042925.1_01244
GCA_001042925.1|JYLC01000001.1@region_528544_543833@tool_cenote	cenote	CDS	540870	541694	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C28	12328	13152	GCA_001042925_1_11_543	GCA_001042925_1_11_543	+	1322044	.	PRK10696	tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional	MGTLSVNQNKLQKRLRRLAGEAITDFNMIEDGDKVMVCLSGGKDSYTMLDILLYLQKVAPIRFEIVAVNMDQKQPGFPEHVLPEYLKSIGVEYHIVEKDTYSVVKEKIPEGKTTCSLCSRLRRGTLYTFADEIGATKMALGHHRDDILETFFLNMFYGGTLKAMPPKLLADDGRNVVIRPLAYCSEKDIEAYSQLKEFPIIPCNLCGSQENLQRQVVKEMLLEWERKSPGRTEIMFRALQNVVPSQLADRNLFDFANLRIDENATPRFLDVMNL*	mmseqs_cdd	nonviral_gene	C28	15290.0	528543	543833	GCA_001042925.1|JYLC01000001.1@region_528544_543833@tool_cenote_CDS_0018	persistent	direct	high	824	0.999	GCA_001042925.1_01245
GCA_001042925.1|JYLC01000001.1@region_528544_543833@tool_cenote	cenote	CDS	541741	542412	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C28	13199	13870	GCA_001042925_1_11_544	GCA_001042925_1_11_544	+	1322044	.	COG2818	3-methyladenine DNA glycosylase Tag [Replication, recombination and repair]. 	MRDYAWMYEYCLNRFGSREALEARLPQPKSAAELRAVGDDRYLSLISLRIFRAGLKHSLVDAKWPAFEEVFFGFDPQKVVLMSAEHLERLMQDARLIRHLGKLKSVPRNAQMVLDLAREHGSFGNFLADWPETDIVGLWKLLSKRGNQLGGLSAPRFLRMAGKDTFIPSDDMVAALKAQEIIDKPPTSLKDLAAVQGAFNQWREESGRPLCQLSVMLAHTVNH*	mmseqs_cdd	nonviral_gene	C28	15290.0	528543	543833	GCA_001042925.1|JYLC01000001.1@region_528544_543833@tool_cenote_CDS_0019	persistent	direct	high	671	0.999	GCA_001042925.1_01246
GCA_001042925.1|JYLC01000001.1@region_528544_543833@tool_cenote	cenote	CDS	542414	543832	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C28	13872	15290	GCA_001042925_1_11_545	GCA_001042925_1_11_545	-	1322044	.	TIGR03810	arginine-ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2. [Transport and binding proteins, Amino acids, peptides and amines]	MADSDKGKLGLPALTALVVGGIIGSGIFSLPQNMAEGAGAGAILIAWAITFVGMLTLTRIFQWLSTTRPELDDGVYGYAREGFGEYLGFNAAWGYWISAWVGNAGYLVVLFSALGSFGALAFFGDGTTWPALLGELTVLWLMHAFVLHGVHNAAITNAIVTLAKVVPIALFILCVALAFRIETFHLDFWGSPALGSVTRQVETTMLYTVWVFLGIESATVYASHARHAADVSRATLLGFVVTLLLLVCVSVLSLGVVPQHELAQMKNPSMAQVMAAAVGPWGATLINVGLIVSVGGALLAWTMLAVEMLYLASRGPTHTAPALFGRTNAVETPAPALWLTSTLISALLLVAFLNASGYNALIQLATSMALIPYLLCAGFCLKLVARRPHSGAMLALALLGTLYGVWLIYAAGLKYLLLSMILYAPGLGFFLHARRQRGLPAFGNRAEGSVAALVLVLALAALWMIGSGRLSL*	mmseqs_cdd	nonviral_gene	C28	15290.0	528543	543833	GCA_001042925.1|JYLC01000001.1@region_528544_543833@tool_cenote_CDS_0020	persistent	direct	high	1418	0.999	GCA_001042925.1_01247
GCA_001042925.1|JYLC01000002.1@region_17771_35191@tool_cenote	cenote	CDS	17770	18375	GCA_001042925.1	JYLC01000002.1	GCA_001042925.1|JYLC01000002.1	GCA_001042925.1_JYLC01000002.1	GCA_001042925.1|JYLC01000002.1	GCA_001042925_1_17	GCA_001042925_1_17@C1	1	606	GCA_001042925_1_17_20	GCA_001042925_1_17_20	-	917271	.	PRK08857	aminodeoxychorismate/anthranilate synthase component II. 	MLLMIDNYDSFTYNLVQYFGELKAEVKVVRNDELSVEQIEALAPERIVLSPGPCTPNEAGVSLAVIERFAGKLPLLGVCLGHQSIGQAFGGEVVRARQVMHGKTSPIHHKNLGVFAGLANPLTVTRYHSLVVKRESLPECLEITAWTQHADGSLDEIMGVRHKTLNVEGVQFHPESILTEQGHELLANFLRQQGGVRGEGN*	mmseqs_cdd	nonviral_gene	C1	17421.0	17770	35191	GCA_001042925.1|JYLC01000002.1@region_17771_35191@tool_cenote_CDS_0001	persistent	direct	high	605	0.998	GCA_001042925.1_02012
GCA_001042925.1|JYLC01000002.1@region_17771_35191@tool_cenote	cenote	CDS	18723	18980	GCA_001042925.1	JYLC01000002.1	GCA_001042925.1|JYLC01000002.1	GCA_001042925.1_JYLC01000002.1	GCA_001042925.1|JYLC01000002.1	GCA_001042925_1_17	GCA_001042925_1_17@C1	954	1211	GCA_001042925_1_17_21	GCA_001042925_1_17_21	-	917271	.	.	hypothetical protein	MTRLLLGLCLLFAGCAASPTTPRPVRVEVPLAVPCRVPDVRPPSWAGATLKAGDSLQAKVRALLAERRQRQGYELELQAALRACR*	.	hypothetical_protein	C1	17421.0	17770	35191	GCA_001042925.1|JYLC01000002.1@region_17771_35191@tool_cenote_CDS_0002	persistent	direct	high	257	0.996	GCA_001042925.1_02013
GCA_001042925.1|JYLC01000002.1@region_17771_35191@tool_cenote	cenote	CDS	18977	19339	GCA_001042925.1	JYLC01000002.1	GCA_001042925.1|JYLC01000002.1	GCA_001042925.1_JYLC01000002.1	GCA_001042925.1|JYLC01000002.1	GCA_001042925_1_17	GCA_001042925_1_17@C1	1208	1570	GCA_001042925_1_17_22	GCA_001042925_1_17_22	-	917271	.	.	hypothetical protein	MSRLALLLPAVLLVLLAGALLGGGLVARHYRPQLEEALGQLTASRVASGQLEALLDEQQRALAAVRASAERRAKDVEQALGEARAQAAEQYAAAVRLLQEPDIGVDCQAAGAAIDRELGL*	.	hypothetical_protein	C1	17421.0	17770	35191	GCA_001042925.1|JYLC01000002.1@region_17771_35191@tool_cenote_CDS_0003	persistent	direct	high	362	0.997	GCA_001042925.1_02014
GCA_001042925.1|JYLC01000002.1@region_17771_35191@tool_cenote	cenote	CDS	19336	19965	GCA_001042925.1	JYLC01000002.1	GCA_001042925.1|JYLC01000002.1	GCA_001042925.1_JYLC01000002.1	GCA_001042925.1|JYLC01000002.1	GCA_001042925_1_17	GCA_001042925_1_17@C1	1567	2196	GCA_001042925_1_17_23	GCA_001042925_1_17_23	-	917271	.	PDB:3WH1_A	Chitinase-	MKLTEQQLLRIFPNARLVAGVFVVALQRAMDEREIDTPARRAAFLAQVGHESSQLTRLVENLNYSAQGLAATWPGRYLGPDGQPNALALRLARNPQAIADNTYATRNGNGDEASGDGWRFRGRGLLQITGRANYRLVGEALGEPLEAEPWRLEQPVPAARSAAWWWAGHGLNELADRGEFAAITRRINGGLNGQAERLALWQRARAVLS*	common_virus_hmm	common_virus	C1	17421.0	17770	35191	GCA_001042925.1|JYLC01000002.1@region_17771_35191@tool_cenote_CDS_0004	persistent	direct	high	629	0.998	GCA_001042925.1_02015
GCA_001042925.1|JYLC01000002.1@region_17771_35191@tool_cenote	cenote	CDS	19998	20987	GCA_001042925.1	JYLC01000002.1	GCA_001042925.1|JYLC01000002.1	GCA_001042925.1_JYLC01000002.1	GCA_001042925.1|JYLC01000002.1	GCA_001042925_1_17	GCA_001042925_1_17@C1	2229	3218	GCA_001042925_1_17_24	GCA_001042925_1_17_24	-	917271	.	PDB:3D37_A	Tail-protein	MQPSFRIVADGTDVTQRLNDRLLKLTLLDKPGMESDSLTLRIDDRDGQVALPRRGAVLEVHLGYAGEPLMRMGRFTVDTLQWAGPPDCLTVTAKAGDMRGSGKTIRSGGWEGTTLAQVCRDVGARNGWRVECPLQVAIARVDQVNESDYHFVTRLARQYDCTAKLAEGMLMVLPRQSGQSATGRRIEPLVLGRADVGSFDVTFDDRSLMRTVKTRYQLPGSGEVKSVELKNPKAPATAMGEHVDRHLYTSRGEAEQAAKARLASFSRSSASVRLELPGRGDLFAERSLLLQGFKAGIDGEFLIDSVEHTYSSSGWTTVVQCNGGRGGKG*	common_virus_hmm	common_virus	C1	17421.0	17770	35191	GCA_001042925.1|JYLC01000002.1@region_17771_35191@tool_cenote_CDS_0005	persistent	direct	high	989	0.999	GCA_001042925.1_02016
GCA_001042925.1|JYLC01000002.1@region_17771_35191@tool_cenote	cenote	CDS	21045	21251	GCA_001042925.1	JYLC01000002.1	GCA_001042925.1|JYLC01000002.1	GCA_001042925.1_JYLC01000002.1	GCA_001042925.1|JYLC01000002.1	GCA_001042925_1_17	GCA_001042925_1_17@C1	3276	3482	GCA_001042925_1_17_25	GCA_001042925_1_17_25	-	917271	.	pfam05489	Phage Tail Protein X. This domain is found in a family of phage tail proteins. Visual analysis suggests that it is related to pfam01476 (personal obs: C Yeats). The functional annotation of family members further confirms this hypothesis.	MATTCRTADGDMLDSLCYHVYGHLLGCVEATLDANPGLADEQQPFRAGLLISFPDMPVVNVEQVRLWD*	mmseqs_cdd	common_virus	C1	17421.0	17770	35191	GCA_001042925.1|JYLC01000002.1@region_17771_35191@tool_cenote_CDS_0006	persistent	direct	high	206	0.995	GCA_001042925.1_02017
GCA_001042925.1|JYLC01000002.1@region_17771_35191@tool_cenote	cenote	CDS	21226	22098	GCA_001042925.1	JYLC01000002.1	GCA_001042925.1|JYLC01000002.1	GCA_001042925.1_JYLC01000002.1	GCA_001042925.1|JYLC01000002.1	GCA_001042925_1_17	GCA_001042925_1_17@C1	3457	4329	GCA_001042925_1_17_26	GCA_001042925_1_17_26	-	917271	.	COG3499	Phage protein U  [Mobilome: prophages, transposons]. 	MAYLEQLQAGLRYLGRAGESGRKSLDKVVAPVNGAISEIRGAAAELENLPGVSPEMAARLQRAMRGIGQAQGKVNRVVSTYDRASRALLGIDERLDALKVQVNSAAQAVGKVAGDISPTLAGVLPSWLLAPSATPPSEAAAPLPHLLVLQPLTANAQPFYFNLNTAAFDALQRNSAYNWSGQVRLGRRPALQSVGMGEESILLKGAVFPLRRQVGNQEKVVGLEQLEALRRLAERREPLILSSGYGEVQMGLWCLVRISENQSALLGNGAPRKQTFDLEFKRYGDDLPNR*	mmseqs_cdd	nonviral_gene	C1	17421.0	17770	35191	GCA_001042925.1|JYLC01000002.1@region_17771_35191@tool_cenote_CDS_0007	persistent	direct	high	872	0.999	GCA_001042925.1_02018
GCA_001042925.1|JYLC01000002.1@region_17771_35191@tool_cenote	cenote	CDS	22108	24345	GCA_001042925.1	JYLC01000002.1	GCA_001042925.1|JYLC01000002.1	GCA_001042925.1_JYLC01000002.1	GCA_001042925.1|JYLC01000002.1	GCA_001042925_1_17	GCA_001042925_1_17@C1	4339	6576	GCA_001042925_1_17_27	GCA_001042925_1_17_27	-	917271	.	PFAM:PF04582.11	tail-length-tape-measure-protein	MSKDMDLVVSIGGIADPSLGKAFETVKARLDSLQERARQASSLRDVLGDAIRLERELADMRKVGDRGVAEHARQLGERQEQLKRLGIEARAAGDAYARLGEMQRGLDMQVRGLQRLEQASQAMPLASAFSGLVVEASKTAAGYQARLRDLAIRNGLDAGREPALASLIQDSASQSGLGRTATLDMLEHLNATGMGFAAAQMNLGLAGRFGFGQGIASAEAAGLVRALQLAQGSDSPEQLSASLDRLVVLGKGRVGSEALARRLPALLSALGNAGEATAGDVGALGALLEIQAKNTTPDKADVRMKAWLEFVGSGSLKRAYGQDYDRDLEALRKDGASLLEANLELAARYRDKGGKLSAGVASPALEAYRASRGEFQGLLESQQSSVGSSERDAQRRKGMSQELWKASSDSWERAQTALGSALNPYLDNLAKGSKALGESTAELLEAYPRTTAGLTAAAGAVLSGYLAYKGGRGAIDVLRGGRLGRRGTAAVGDLIERGAGRVSGGSEIQRVFVTNWPVPGGDSTLESARRPAQRKRGQTPRRKRGKGGGLKARSLPSLGFSAGGGLGAMAGKLPRLSRLPIRNAPLQVASSLIDVAEVYSSDLSESEKTIAYGEAGGSLAGSLAGAALGASIGSVVPVVGTLIGGLVGGAIGAWGGSELGGRLGRSLAGDPPAASDNKPAVPVPQAEPVAAVPNWTFAPQINLTVQGNVHEPQRLADELLPYLQRMLVDFADERQRRSLYDPAMV*	phrogs_hmm	hypothetical_protein	C1	17421.0	17770	35191	GCA_001042925.1|JYLC01000002.1@region_17771_35191@tool_cenote_CDS_0008	persistent	direct	high	2237	1.0	GCA_001042925.1_02019
GCA_001042925.1|JYLC01000002.1@region_17771_35191@tool_cenote	cenote	CDS	24436	24546	GCA_001042925.1	JYLC01000002.1	GCA_001042925.1|JYLC01000002.1	GCA_001042925.1_JYLC01000002.1	GCA_001042925.1|JYLC01000002.1	GCA_001042925_1_17	GCA_001042925_1_17@C1	6667	6777	GCA_001042925_1_17_28	GCA_001042925_1_17_28	-	917271	.	PF06528.12	Phage P2 GpE	MRQLARRLAIELGFQASELERMTLGDLLWWLAEGEE*	hhsuite_tools	hypothetical_protein	C1	17421.0	17770	35191	GCA_001042925.1|JYLC01000002.1@region_17771_35191@tool_cenote_CDS_0009	persistent	ambiguous	low	31	0.279	GCA_001042925.1_02020
GCA_001042925.1|JYLC01000002.1@region_17771_35191@tool_cenote	cenote	CDS	24515	24859	GCA_001042925.1	JYLC01000002.1	GCA_001042925.1|JYLC01000002.1	GCA_001042925.1_JYLC01000002.1	GCA_001042925.1|JYLC01000002.1	GCA_001042925_1_17	GCA_001042925_1_17@C1	6746	7090	GCA_001042925_1_17_29	GCA_001042925_1_17_29	-	917271	.	pfam10109	Phage tail assembly chaperone proteins, E, or 41 or 14. This is family of various Myoviridae bacteriophage tail assembly chaperone, or TAC, proteins.	MTQENRLPGWLTLDADAALVRLSRPAQCNGVSVDTLTLRAPTVRDIRLAGKVAGDDAEERELQLFASLAQVSRQDLEGLKLSDYQRLQGAYFRLVQDDTDDTFAYASTGEAPGH*	mmseqs_cdd	common_virus	C1	17421.0	17770	35191	GCA_001042925.1|JYLC01000002.1@region_17771_35191@tool_cenote_CDS_0010	persistent	direct	high	344	0.997	GCA_001042925.1_02020
GCA_001042925.1|JYLC01000002.1@region_17771_35191@tool_cenote	cenote	CDS	24874	25377	GCA_001042925.1	JYLC01000002.1	GCA_001042925.1|JYLC01000002.1	GCA_001042925.1_JYLC01000002.1	GCA_001042925.1|JYLC01000002.1	GCA_001042925_1_17	GCA_001042925_1_17@C1	7105	7608	GCA_001042925_1_17_30	GCA_001042925_1_17_30	-	917271	.	PFAM:PF04985.13	tail-tube-protein	MIPQTLTNTNLFIDGVSFAGDVPSLTLPKLAVKTEQYRAGGMDAPVSIDMGLEAMEAKFSTNGARREALNFFGLADQSAFNGVFRGSFKGQKGASVPVVATLRGLLKEVDPGDWKAGEKAEFKYAVAVSYYKLEVDGREVYEIDPVNGVRAINGVDQLAGMRNDLGL*	hallmark_hmm	common_virus	C1	17421.0	17770	35191	GCA_001042925.1|JYLC01000002.1@region_17771_35191@tool_cenote_CDS_0011	persistent	direct	high	503	0.998	GCA_001042925.1_02021
GCA_001042925.1|JYLC01000002.1@region_17771_35191@tool_cenote	cenote	CDS	25390	26550	GCA_001042925.1	JYLC01000002.1	GCA_001042925.1|JYLC01000002.1	GCA_001042925.1_JYLC01000002.1	GCA_001042925.1|JYLC01000002.1	GCA_001042925_1_17	GCA_001042925_1_17@C1	7621	8781	GCA_001042925_1_17_31	GCA_001042925_1_17_31	-	917271	.	PDB:3J9Q_C	sheath-tube	MSFFHGVTVTNVDIGARTIALPASSVIGLCDVFTPGAQASAKPNVPVLLTSKKDAAAAFGIGSSIYLACEAIYNRAQAVIVAVGVEAAETPEAQASAVIGGISAAGERTGLQALLDGKSRFNAQPRLLVAPGHSAQQAVATAMDGLAEKLRAIAILDGPNSTDEAAVAYAKNFGSKRLFMVDPGVQVWDSATNAARNAPASAYAAGLFAWTDAEYGFWSSPSNKEIKGVTGTSRPVEFLDGDETCRANLLNNANIATIIRDDGYRLWGNRTLSSDSKWAFVTRVRTMDLVMDAILAGHKWAVDRGITKTYVKDVTEGLRAFMRDLKNQGAVINFEVYADPDLNSASQLAQGKVYWNIRFTDVPPAENPNFRVEVTDQWLTEVLDVA*	hallmark_hmm	common_virus	C1	17421.0	17770	35191	GCA_001042925.1|JYLC01000002.1@region_17771_35191@tool_cenote_CDS_0012	persistent	direct	high	1160	0.999	GCA_001042925.1_02022
GCA_001042925.1|JYLC01000002.1@region_17771_35191@tool_cenote	cenote	CDS	26593	27033	GCA_001042925.1	JYLC01000002.1	GCA_001042925.1|JYLC01000002.1	GCA_001042925.1_JYLC01000002.1	GCA_001042925.1|JYLC01000002.1	GCA_001042925_1_17	GCA_001042925_1_17@C1	8824	9264	GCA_001042925_1_17_32	GCA_001042925_1_17_32	-	917271	.	PFAM:PF02413.16	tail-fiber-assembly-protein	MIFFHAATGGFYSKEIHGSRMPLEDEMHPLEDAEYQALLRAQSEGKRIVTDHTGRPICVDPPAPAKDILVQRERIWRDRQLQLTDGPLARHRDEQDLGKTTTLSQEQLRELTLYRAVLRDWPIAAEFPDLNARPEPPAWLQSLITP*	phrogs_hmm	hypothetical_protein	C1	17421.0	17770	35191	GCA_001042925.1|JYLC01000002.1@region_17771_35191@tool_cenote_CDS_0013	cloud	direct	high	440	0.998	GCA_001042925.1_02023
GCA_001042925.1|JYLC01000002.1@region_17771_35191@tool_cenote	cenote	CDS	27041	29146	GCA_001042925.1	JYLC01000002.1	GCA_001042925.1|JYLC01000002.1	GCA_001042925.1_JYLC01000002.1	GCA_001042925.1|JYLC01000002.1	GCA_001042925_1_17	GCA_001042925_1_17@C1	9272	11377	GCA_001042925_1_17_33	GCA_001042925_1_17_33	-	917271	.	PFAM:PF12571.7	tail-collar-fibre-protein	MTTNTPKYGGLLTDIGAAALAAASAAGKKWQPTHMLIGDAGGAPGDTPDPLPSAAQKSLINQRHRAQLNRLFVSDKNANTLVAEVVLPVEVGGFWIREIGLQDADGKFVAVSNCPPSYKAAMESGSARTQTIRVNIALSGLENVQLLIDNGIIYATQDWVKEKVAADFKGRKILAGNGLVGGGDLSADRSIGLAPSGVTAGSYRSVTVNANGVVTQGSNPTTLAGYAIGDAYTKADTDGKLAQKANKATTLAGYGITDALRVDGNAVSSSRLAAPRSLAASGDASWSVTFDGSANVSAPLSLSATGVAAGSYPKVTVDTKGRVTAGMALAATDIPGLDASKLVSGVLAEQRLPVFARGLATAVSNSSDPNTATVPLMLTNHANGPVAGRYFYIQSMFYPDQNGNASQIATSYNATSEMYVRVSYAANPSIREWLPWQRCDIGGSFTKTTDGSIGNGVNINSFVNSGWWLQSTSEWAAGGANYPVGLAGLLIVYRAHADHIYQTYVTLNGSTYSRCCYAGSWRPWRQNWDDGNFDPASYLPKAGFTWAALPGKPATFPPSGHNHDTSQITSGILPLARGGLGANTAAGARNNIGAGVPATASRALNGWWKDNDTGLIVQWMQVNVGDHPGGIIDRTLTFPIAFPSACLHVVPTVKEVGRPATSASTVTVADVSVSNTGCVIVSSEYYGLAQNYGIRVMAIGY*	hallmark_hmm	common_virus	C1	17421.0	17770	35191	GCA_001042925.1|JYLC01000002.1@region_17771_35191@tool_cenote_CDS_0014	persistent	direct	high	2105	1.0	GCA_001042925.1_02024
GCA_001042925.1|JYLC01000002.1@region_17771_35191@tool_cenote	cenote	CDS	29148	29681	GCA_001042925.1	JYLC01000002.1	GCA_001042925.1|JYLC01000002.1	GCA_001042925.1_JYLC01000002.1	GCA_001042925.1|JYLC01000002.1	GCA_001042925_1_17	GCA_001042925_1_17@C1	11379	11912	GCA_001042925_1_17_34	GCA_001042925_1_17_34	-	917271	.	PFAM:PF09684.9	Tail-protein	MSSRLLPPNRSSLERSLGDVLPAELPVPLRELHDPARCEAALLPYLAWTRSVDRWDPDWSDEAKRNAVATSFVLHQRKGTLTALRQVVEPIGALSEVTEWWQRSPLGVPGTFEITVDVSDRGIDEGTVLELERLLDDVRPVSRHLTRLDLRITPVIRSRHGLAVTDGDTLEIFPWKQ*	hallmark_hmm	common_virus	C1	17421.0	17770	35191	GCA_001042925.1|JYLC01000002.1@region_17771_35191@tool_cenote_CDS_0015	persistent	direct	high	533	0.998	GCA_001042925.1_02025
GCA_001042925.1|JYLC01000002.1@region_17771_35191@tool_cenote	cenote	CDS	29674	30561	GCA_001042925.1	JYLC01000002.1	GCA_001042925.1|JYLC01000002.1	GCA_001042925.1_JYLC01000002.1	GCA_001042925.1|JYLC01000002.1	GCA_001042925_1_17	GCA_001042925_1_17@C1	11905	12792	GCA_001042925_1_17_35	GCA_001042925_1_17_35	-	917271	.	CDD:COG3948	baseplate-assembly-protein	MIIDLSQLPEPEVIENLDFETIYQELLGDFREAMAGEWTAEVESDPVLKLLQLAAYRELLLRARINDAARAVMLAYASGADLDQIGAGFNVQRLLIRPAQPEAVPPVEAQYESDKSLRNRIQLAFEQLSVAGPRNAYIAHALGADGRVADASATSPAPCEVLISVLGVEGNGQAPEAVLQAVRLALNAEDVRPVADRVTVRSAGIVPYQVKAQLYLFPGPEAELIRAAAEASLRDYISAQRRLGRDIRRSALFATLHVEGVQRVELQEPAADVVLDETQAAYCTGYAITLGGVDE*	hallmark_hmm	common_virus	C1	17421.0	17770	35191	GCA_001042925.1|JYLC01000002.1@region_17771_35191@tool_cenote_CDS_0016	persistent	direct	high	887	0.999	GCA_001042925.1_02026
GCA_001042925.1|JYLC01000002.1@region_17771_35191@tool_cenote	cenote	CDS	30558	30884	GCA_001042925.1	JYLC01000002.1	GCA_001042925.1|JYLC01000002.1	GCA_001042925.1_JYLC01000002.1	GCA_001042925.1|JYLC01000002.1	GCA_001042925_1_17	GCA_001042925_1_17@C1	12789	13115	GCA_001042925_1_17_36	GCA_001042925_1_17_36	-	917271	.	PDB:5IW9_B	Baseplate-wedge-protein	MIGMDRRSGLPLSGLAHLKQSVEDILTTPLGSRRMRPEYGSKLRRMVDMPVSEGWKSAVQAEVARSLGRWEPRIGLSAVRVVAVVDGRVDLLLSGVFEGENINMEVSA*	hallmark_hmm	common_virus	C1	17421.0	17770	35191	GCA_001042925.1|JYLC01000002.1@region_17771_35191@tool_cenote_CDS_0017	persistent	direct	high	326	0.997	GCA_001042925.1_02027
GCA_001042925.1|JYLC01000002.1@region_17771_35191@tool_cenote	cenote	CDS	31037	31594	GCA_001042925.1	JYLC01000002.1	GCA_001042925.1|JYLC01000002.1	GCA_001042925.1_JYLC01000002.1	GCA_001042925.1|JYLC01000002.1	GCA_001042925_1_17	GCA_001042925_1_17@C1	13268	13825	GCA_001042925_1_17_37	GCA_001042925_1_17_37	-	917271	.	CDD:COG4540	baseplate-assembly-protein	MSYVSAEHDRMLAAMILPCVVVAVDLAAARVRVRSGDWTSGWLRWHSLAAGKVRHWRAPSIGEQGVLLSPSGGVSMGTFIPGLYGDAGTAPDNSASSETWRFDDGASLSYDWAAHRYRVELPSGTVEVRVGASEVRVSDGAVSLKAPKISLEGPVEIAGTLTVSGDILGGGSIIDTAGNSNHHTH*	common_virus_hmm	common_virus	C1	17421.0	17770	35191	GCA_001042925.1|JYLC01000002.1@region_17771_35191@tool_cenote_CDS_0018	persistent	direct	high	557	0.998	GCA_001042925.1_02028
GCA_001042925.1|JYLC01000002.1@region_17771_35191@tool_cenote	cenote	CDS	31591	32106	GCA_001042925.1	JYLC01000002.1	GCA_001042925.1|JYLC01000002.1	GCA_001042925.1_JYLC01000002.1	GCA_001042925.1|JYLC01000002.1	GCA_001042925_1_17	GCA_001042925_1_17@C1	13822	14337	GCA_001042925_1_17_38	GCA_001042925_1_17_38	-	917271	.	PFAM:PF08873.10	tail-completion-protein	MPEQAVTLEALYAAIEQVLRERLPEAQLIGFWPGVPENTPAVSLEIAELLPERDPGTGESALLCRLQARIMVPPGADRQAVSIACGIVRTLREQTWNLSLQPARFVRSAVDGSREELKSLRVWLVEWTQSLRLGDPEWAWEDQPPGSLMLGFDPQTGPGHEPDYFAPEALA*	hallmark_hmm	common_virus	C1	17421.0	17770	35191	GCA_001042925.1|JYLC01000002.1@region_17771_35191@tool_cenote_CDS_0019	persistent	direct	high	515	0.998	GCA_001042925.1_02029
GCA_001042925.1|JYLC01000002.1@region_17771_35191@tool_cenote	cenote	CDS	32128	32481	GCA_001042925.1	JYLC01000002.1	GCA_001042925.1|JYLC01000002.1	GCA_001042925.1_JYLC01000002.1	GCA_001042925.1|JYLC01000002.1	GCA_001042925_1_17	GCA_001042925_1_17@C1	14359	14712	GCA_001042925_1_17_39	GCA_001042925_1_17_39	-	917271	.	pfam16085	Bacteriophage holin Hol, superfamily III. Phage_holin_6_2 is a family of holins classified as 1.E.20 in the TC database. The hol gene (PRF9) product (117 aas) of Pseudomonas aeruginosa PAO1 exhibits a hydrophobicity profile similar to holins of P2 and phiCTX phages with two peaks of hydrophobicity that might correspond to either one or two TMSs. Hol functions in conjunction with the lytic enzyme, Lys, a glycosyl hydrolase that breaks-up the murein in the bacterial cell-wall, causing lysis of the cell and hence entry of phage particles. Several members are annotated as pyocin R2_PP when encoded on the chromosome.	MGNEPQTLTEMPLWVLILLAALGGVSGEMWRADKAGLGGWALLRRLALRSGASIVCGVAVMLLALACGAALLFAAALGSLTAAAGAEIAVGLYERWAARRLGVCELPEEQSDDRGPH*	mmseqs_cdd	nonviral_gene	C1	17421.0	17770	35191	GCA_001042925.1|JYLC01000002.1@region_17771_35191@tool_cenote_CDS_0020	persistent	direct	high	353	0.997	GCA_001042925.1_02030
GCA_001042925.1|JYLC01000002.1@region_17771_35191@tool_cenote	cenote	CDS	32941	33300	GCA_001042925.1	JYLC01000002.1	GCA_001042925.1|JYLC01000002.1	GCA_001042925.1_JYLC01000002.1	GCA_001042925.1|JYLC01000002.1	GCA_001042925_1_17	GCA_001042925_1_17@C1	15172	15531	GCA_001042925_1_17_40	GCA_001042925_1_17_40	-	917271	.	.	hypothetical protein	MIKAIDEMLKLWAEEMHAPGSNGGGYAGGNLIAMLIASKGEVVRGHRGSRVILDRVAEVDRLVNRLPEELKNVVVEHYLNRDSFPEQKYRHCGCSRNTFYLRLHVAHQGIQDGLLRRVA*	.	hypothetical_protein	C1	17421.0	17770	35191	GCA_001042925.1|JYLC01000002.1@region_17771_35191@tool_cenote_CDS_0021	persistent	direct	high	359	0.997	GCA_001042925.1_02031
GCA_001042925.1|JYLC01000002.1@region_17771_35191@tool_cenote	cenote	CDS	33348	33548	GCA_001042925.1	JYLC01000002.1	GCA_001042925.1|JYLC01000002.1	GCA_001042925.1_JYLC01000002.1	GCA_001042925.1|JYLC01000002.1	GCA_001042925_1_17	GCA_001042925_1_17@C1	15579	15779	GCA_001042925_1_17_41	GCA_001042925_1_17_41	-	917271	.	TIGR02419	phage/conjugal plasmid C-4 type zinc finger protein, TraR family. Members of this family are putative C4-type zinc finger proteins found almost exclusively in prophage regions, actual phage, or conjugal transfer regions of the Proteobactia. This small protein (about 70 amino acids) appears homologous to but is smaller than DksA (DnaK suppressor protein), found to be critical for regulating transcription of ribosomal RNA. [Mobile and extrachromosomal element functions, Prophage functions]	MADLADHANELVLARLDGLLAARPALAIRESAEDCEDCGEPIPQARRRAAPGCSRCIDCQDRHERR*	mmseqs_cdd	nonviral_gene	C1	17421.0	17770	35191	GCA_001042925.1|JYLC01000002.1@region_17771_35191@tool_cenote_CDS_0022	persistent	direct	high	200	0.995	GCA_001042925.1_02032
GCA_001042925.1|JYLC01000002.1@region_17771_35191@tool_cenote	cenote	CDS	33751	33921	GCA_001042925.1	JYLC01000002.1	GCA_001042925.1|JYLC01000002.1	GCA_001042925.1_JYLC01000002.1	GCA_001042925.1|JYLC01000002.1	GCA_001042925_1_17	GCA_001042925_1_17@C1	15982	16152	GCA_001042925_1_17_42	GCA_001042925_1_17_42	+	917271	.	.	hypothetical protein	MDGAPALQVPERFPMAPAPKQSAPASSVADNRVRPCTHVKSLKGGWEVVEPTPSAF*	.	hypothetical_protein	C1	17421.0	17770	35191	GCA_001042925.1|JYLC01000002.1@region_17771_35191@tool_cenote_CDS_0023	persistent	direct	high	170	0.994	GCA_001042925.1_02033
GCA_001042925.1|JYLC01000002.1@region_17771_35191@tool_cenote	cenote	CDS	34006	34776	GCA_001042925.1	JYLC01000002.1	GCA_001042925.1|JYLC01000002.1	GCA_001042925.1_JYLC01000002.1	GCA_001042925.1|JYLC01000002.1	GCA_001042925_1_17	GCA_001042925_1_17@C1	16237	17007	GCA_001042925_1_17_43	GCA_001042925_1_17_43	+	917271	.	PDB:2FJR_A	Repressor-protein-CI	MDKSTQIPPDSFAARLKQAMAMRNLKQETLAEAAGVSQNTIHKLTSGKAQSTRKLIEIAAALGVSPVWLQTGEGAPAARSAVSVADGSPLVLEPLHPWDSDTPLDEDEVELPLYKEVEMSAGAGRTAVREIEGRKLRFSYATLRASGVDPSAAICAQLTGNSMEPLIMDGSTIGVDTATTHITDGEIYALEHDGMLRVKFVYRLPGGGIRLRSFNREEYPDEEYSPEDMRSRQISMIGWVFWWSTVRHRRGPSLVR*	common_virus_hmm	common_virus	C1	17421.0	17770	35191	GCA_001042925.1|JYLC01000002.1@region_17771_35191@tool_cenote_CDS_0024	persistent	direct	high	770	0.999	GCA_001042925.1_02034
GCA_001042925.1|JYLC01000002.1@region_17771_35191@tool_cenote	cenote	CDS	34876	35190	GCA_001042925.1	JYLC01000002.1	GCA_001042925.1|JYLC01000002.1	GCA_001042925.1_JYLC01000002.1	GCA_001042925.1|JYLC01000002.1	GCA_001042925_1_17	GCA_001042925_1_17@C1	17107	17421	GCA_001042925_1_17_44	GCA_001042925_1_17_44	+	917271	.	pfam11112	Pyocin activator protein PrtN. PrtN is a transcriptional activator for pyocin synthesis genes. It activates the expression of various pyocin genes by interaction with the DNA sequences conserved in the 5' noncoding regions of the pyocin genes.	MQPSIAPSTPIPRQETVELVYRIFGDVLVPLEQVRERWFRNLNKENFSKALACGRIALPVTTLDDSHKAMQFVALDHLAAYVDQRANQAGGARRAPPGADSIAP*	mmseqs_cdd	nonviral_gene	C1	17421.0	17770	35191	GCA_001042925.1|JYLC01000002.1@region_17771_35191@tool_cenote_CDS_0025	persistent	direct	high	314	0.997	GCA_001042925.1_02035
GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote	cenote	tRNA	37825	37898	GCA_001042925.1	JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925.1_JYLC01000001.1	GCA_001042925.1|JYLC01000001.1	GCA_001042925_1_11	GCA_001042925_1_11@C0	37826	37899	tRNA-Gly	tRNA-Gly	-	1322044	.	tRNAscan-SE score: 62.3	Gly	NA	tRNAscan-SE	.	C0	38932.0	0	38932	GCA_001042925.1|JYLC01000001.1@region_1_38932@tool_cenote_tRNA_0001	.	.	.	.	.	.