core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_001051895.1|LFKS01000013.1@region_30429_41212@tool_cenote	cenote	CDS	30428	30775	GCA_001051895.1	LFKS01000013.1	GCA_001051895.1|LFKS01000013.1	GCA_001051895.1_LFKS01000013.1	GCA_001051895.1|LFKS01000013.1	GCA_001051895_1_11	GCA_001051895_1_11@C1	1	348	GCA_001051895_1_11_26	GCA_001051895_1_11_26	-	819173	.	NF033788	metalloregulator ArsR/SmtB family transcription factor. Transcriptional repressors that sense toxic heavy metals such as arsenic or cadmium, and are released from DNA so that resistance factors will be expressed, include ArsR, SmtB, ZiaR, CadC, CadX, KmtR, etc. However, some members of this family, including the sporulation delaying system autorepressor SdpR and its family (see NF033789), may lack metal-binding cites and instead regulate other cellular processes.	MSYENACDVICVHEDKVNNALSFLEDDKSKKLLNILEKICDEKKLKIILSLIKEDELCVCDISLILKMSVASTSHHLRLLYKNEVLDFYKDGKMAYYFIKDDEIREFFSKNQKGF*	mmseqs_cdd	nonviral_gene	C1	10784	30428	41212	GCA_001051895.1|LFKS01000013.1@region_30429_41212@tool_cenote_CDS_0001	shell	direct	high	347	0.997	GCA_001051895.1_00877
GCA_001051895.1|LFKS01000013.1@region_30429_41212@tool_cenote	cenote	CDS	30794	31411	GCA_001051895.1	LFKS01000013.1	GCA_001051895.1|LFKS01000013.1	GCA_001051895.1_LFKS01000013.1	GCA_001051895.1|LFKS01000013.1	GCA_001051895_1_11	GCA_001051895_1_11@C1	367	984	GCA_001051895_1_11_27	GCA_001051895_1_11_27	-	819173	.	pfam03596	Cadmium resistance transporter. 	MIQTIVTAAILYIATALDLLVILLMFFARAKTRKEYRDIYIGQYVGSVALIVISLFFAFVLNYVPEKWILGLLGLIPIYLGIKVAIYGDSDGEERAKKELNEKGLSKLVGTIAIVTIASCGADNIGLFVPYFVTLSVTNLLITLFVFLILIFFLVFTAQKLANIPGVGEIVEKFGRWIMAVIYIALGLFIIIENDTIQTILGFIF*	mmseqs_cdd	nonviral_gene	C1	10784	30428	41212	GCA_001051895.1|LFKS01000013.1@region_30429_41212@tool_cenote_CDS_0002	persistent	direct	high	617	0.998	GCA_001051895.1_00878
GCA_001051895.1|LFKS01000013.1@region_30429_41212@tool_cenote	cenote	CDS	31628	32056	GCA_001051895.1	LFKS01000013.1	GCA_001051895.1|LFKS01000013.1	GCA_001051895.1_LFKS01000013.1	GCA_001051895.1|LFKS01000013.1	GCA_001051895_1_11	GCA_001051895_1_11@C1	1201	1629	GCA_001051895_1_11_28	GCA_001051895_1_11_28	-	819173	.	PFAM:PF03592.15	Terminase-small-subunit	MKSLTLKQKQFADEYIRTGNAYQSAVNAGYSVSYARGNAIKLLENVSINQYIDDNLEIIQKESIAETDEIMRYLTRVLRAEEREEILVYVGDGMQEIQTIQPSTKDRIKAAELLGKRYRMWTDKHEVEITTPIFIDDVPEED*	hallmark_hmm	common_virus	C1	10784	30428	41212	GCA_001051895.1|LFKS01000013.1@region_30429_41212@tool_cenote_CDS_0003	shell	direct	high	428	0.998	GCA_001051895.1_00879
GCA_001051895.1|LFKS01000013.1@region_30429_41212@tool_cenote	cenote	CDS	32082	32321	GCA_001051895.1	LFKS01000013.1	GCA_001051895.1|LFKS01000013.1	GCA_001051895.1_LFKS01000013.1	GCA_001051895.1|LFKS01000013.1	GCA_001051895_1_11	GCA_001051895_1_11@C1	1655	1894	GCA_001051895_1_11_29	GCA_001051895_1_11_29	-	819173	.	PFAM:PF03592.15	Terminase-small-subunit	MKKLTTKQRRFADEYIETGNPYYSALKVGYSKVYARDNALKLLENVSVKSYIHERLEEIKNDNMAENYGVMRYLTRLIK*	hallmark_hmm	common_virus	C1	10784	30428	41212	GCA_001051895.1|LFKS01000013.1@region_30429_41212@tool_cenote_CDS_0004	shell	direct	high	239	0.996	GCA_001051895.1_00880
GCA_001051895.1|LFKS01000013.1@region_30429_41212@tool_cenote	cenote	CDS	32376	32897	GCA_001051895.1	LFKS01000013.1	GCA_001051895.1|LFKS01000013.1	GCA_001051895.1_LFKS01000013.1	GCA_001051895.1|LFKS01000013.1	GCA_001051895_1_11	GCA_001051895_1_11@C1	1949	2470	GCA_001051895_1_11_30	GCA_001051895_1_11_30	-	819173	.	PFAM:PF09979.8	head-maturation-protease	MKTLKQIEVHKKNIESYQKDIQALEQEVNSEKEKIDQLNADYQELVVSGQVEKADKLYTKIDKQETTYKAKVKRLSVMKQSLKQVIIKNCSSMQEEADKLSDEYIDIYYDDLQHYNKLKEELKQAEQKLEEHNNSYLLNQRNLSHYIDRLIRENNIQATEFMGSVNSRKPFYI*	phrogs_hmm	hypothetical_protein	C1	10784	30428	41212	GCA_001051895.1|LFKS01000013.1@region_30429_41212@tool_cenote_CDS_0005	shell	direct	high	521	0.998	GCA_001051895.1_00881
GCA_001051895.1|LFKS01000013.1@region_30429_41212@tool_cenote	cenote	CDS	32909	33142	GCA_001051895.1	LFKS01000013.1	GCA_001051895.1|LFKS01000013.1	GCA_001051895.1_LFKS01000013.1	GCA_001051895.1|LFKS01000013.1	GCA_001051895_1_11	GCA_001051895_1_11@C1	2482	2715	GCA_001051895_1_11_31	GCA_001051895_1_11_31	-	819173	.	.	hypothetical protein	MNNDEMNKLSEALELSESQRLALYSYSERQAKEKAQTQEQKKELSSLEKHKKRQQIMSIKDANQRQEEIAKHVELFK*	.	hypothetical_protein	C1	10784	30428	41212	GCA_001051895.1|LFKS01000013.1@region_30429_41212@tool_cenote_CDS_0006	shell	direct	high	233	0.996	GCA_001051895.1_00882
GCA_001051895.1|LFKS01000013.1@region_30429_41212@tool_cenote	cenote	CDS	33132	33974	GCA_001051895.1	LFKS01000013.1	GCA_001051895.1|LFKS01000013.1	GCA_001051895.1_LFKS01000013.1	GCA_001051895.1|LFKS01000013.1	GCA_001051895_1_11	GCA_001051895_1_11@C1	2705	3547	GCA_001051895_1_11_32	GCA_001051895_1_11_32	-	819173	.	PFAM:PF05263.10	spore-coat-protein	MASLKQAYQPDTDAEEIEMISDDTLFTVYNPKFIEEKKQMIEDYIETLYERNTPNMVCDPVTQMVYYQSQNLESLVMYIIEEKKKLNAFIRKSNRNLYHLYAVLDGYTDEERAFLMNYIKHAKVRDNELVRRFKIDFYEHLKVVREKRQEEHNKKSFNAYLVDKDEVRKRQQKKKINNGYGLTLNQEKELRLIKEHEEERNTDMAVFINLIQQMNNDELLSYVLDRHEFNIDSYNLKILTDAALYRLPLKQRKQAYNHLKAITRTLTNNPIEKRLKQYEQ*	phrogs_hmm	hypothetical_protein	C1	10784	30428	41212	GCA_001051895.1|LFKS01000013.1@region_30429_41212@tool_cenote_CDS_0007	shell	direct	high	842	0.999	GCA_001051895.1_00883
GCA_001051895.1|LFKS01000013.1@region_30429_41212@tool_cenote	cenote	CDS	34028	34825	GCA_001051895.1	LFKS01000013.1	GCA_001051895.1|LFKS01000013.1	GCA_001051895.1_LFKS01000013.1	GCA_001051895.1|LFKS01000013.1	GCA_001051895_1_11	GCA_001051895_1_11@C1	3601	4398	GCA_001051895_1_11_33	GCA_001051895_1_11_33	-	819173	.	PDB:4M4W_K	Replicative-helicase	MKSINDIDLKSKMRSELIEEQYNLKCDKCKNIYSYHKFRKSDGTIQIIRNGCECESIEKGKQSRSQHKANQKRLNIEKVFKQSMMNDDLLKAEFDNYKPTNKNLLEAKQILQKYAANFKPDKPKSLLLQGSYGIGKSHLAMSVVREVKKKGYTALFLDVTELVKAYRNTYNKNVAMTEKELDQMIRDVDLLVIDDYGTTVNDYGNEKLFSLTDMRTGKSNIITTNREALELSNNDDKAKRFSRLMKNTQIIKMHGTDYRLKDFKS*	rep_hall_hmm	common_virus	C1	10784	30428	41212	GCA_001051895.1|LFKS01000013.1@region_30429_41212@tool_cenote_CDS_0008	shell	direct	high	797	0.999	GCA_001051895.1_00884
GCA_001051895.1|LFKS01000013.1@region_30429_41212@tool_cenote	cenote	CDS	34838	35632	GCA_001051895.1	LFKS01000013.1	GCA_001051895.1|LFKS01000013.1	GCA_001051895.1_LFKS01000013.1	GCA_001051895.1|LFKS01000013.1	GCA_001051895_1_11	GCA_001051895_1_11@C1	4411	5205	GCA_001051895_1_11_34	GCA_001051895_1_11_34	-	819173	.	PFAM:PF07261.10	DNA-polymerase-B	MSDRLIDYTGGYGNVYKTITKDPNLSIEAKGIYAYLSSYAGGKDVAFPSISLICHELNISEKRFYKHRKELIDKNIISVHRERTNNGFSKSIYTINHHFVHSQNVHVQNDNVRNESVQNVHVQNVGTKKNNIKKNNIKKNKEKKNSSSSASTTKQQPPSHSYSNVFNFYQENGFGILQPFVVDQIENWIDDFNGNENIVIEALKEAATNNVCKWSYANSILKSWYQDGIKSIDDIEARRKQREASKNKTESTKTFDNSQYADLF*	rep_hall_hmm	common_virus	C1	10784	30428	41212	GCA_001051895.1|LFKS01000013.1@region_30429_41212@tool_cenote_CDS_0009	shell	direct	high	794	0.999	GCA_001051895.1_00885
GCA_001051895.1|LFKS01000013.1@region_30429_41212@tool_cenote	cenote	CDS	35660	35884	GCA_001051895.1	LFKS01000013.1	GCA_001051895.1|LFKS01000013.1	GCA_001051895.1_LFKS01000013.1	GCA_001051895.1|LFKS01000013.1	GCA_001051895_1_11	GCA_001051895_1_11@C1	5233	5457	GCA_001051895_1_11_35	GCA_001051895_1_11_35	-	819173	.	PFAM:PF04492.12	DnaD-like-helicase-loader	MTNKIKCSKGYGVITQSVMSSKDISIEAKALYCYYMAHVGDNIIPSATQTCNDLMISYKRFKTLRTQLFERGFL*	phrogs_hmm	hypothetical_protein	C1	10784	30428	41212	GCA_001051895.1|LFKS01000013.1@region_30429_41212@tool_cenote_CDS_0010	shell	direct	high	224	0.996	GCA_001051895.1_00886
GCA_001051895.1|LFKS01000013.1@region_30429_41212@tool_cenote	cenote	CDS	35907	36221	GCA_001051895.1	LFKS01000013.1	GCA_001051895.1|LFKS01000013.1	GCA_001051895.1_LFKS01000013.1	GCA_001051895.1|LFKS01000013.1	GCA_001051895_1_11	GCA_001051895_1_11@C1	5480	5794	GCA_001051895_1_11_36	GCA_001051895_1_11_36	-	819173	.	pfam07342	Protein of unknown function (DUF1474). This family consists of several bacterial proteins of around 100 residues in length. Members of this family seem to be found exclusively in Staphylococcus aureus. The function of this family is unknown.	MNWEQKNILSDLEILKEKLEDLYTTHAWHFDDIYIKREIQTQEETSRYLMEYSENRIQHTQHSDLLHMYLKEFESLLKRFKELDKKETLSAPTKVTDNEELKNY*	mmseqs_cdd	nonviral_gene	C1	10784	30428	41212	GCA_001051895.1|LFKS01000013.1@region_30429_41212@tool_cenote_CDS_0011	shell	direct	high	314	0.997	GCA_001051895.1_00887
GCA_001051895.1|LFKS01000013.1@region_30429_41212@tool_cenote	cenote	CDS	36221	36619	GCA_001051895.1	LFKS01000013.1	GCA_001051895.1|LFKS01000013.1	GCA_001051895.1_LFKS01000013.1	GCA_001051895.1|LFKS01000013.1	GCA_001051895_1_11	GCA_001051895_1_11@C1	5794	6192	GCA_001051895_1_11_37	GCA_001051895_1_11_37	-	819173	.	.	hypothetical protein	MKNLNNKQTEKIIYQLYKDRMNLEEELIFEERFDRDRAIIKVMFERWGMEPEAHDKLAGAIALKYRKVFETYMNVTNLIIHFKTNKLNLTDFASTENLRDLFILQNALNELIANIRNQHKNYIVVHRNGGAK*	.	hypothetical_protein	C1	10784	30428	41212	GCA_001051895.1|LFKS01000013.1@region_30429_41212@tool_cenote_CDS_0012	cloud	direct	high	398	0.997	GCA_001051895.1_00888
GCA_001051895.1|LFKS01000013.1@region_30429_41212@tool_cenote	cenote	CDS	36941	37210	GCA_001051895.1	LFKS01000013.1	GCA_001051895.1|LFKS01000013.1	GCA_001051895.1_LFKS01000013.1	GCA_001051895.1|LFKS01000013.1	GCA_001051895_1_11	GCA_001051895_1_11@C1	6514	6783	GCA_001051895_1_11_38	GCA_001051895_1_11_38	-	819173	.	PFAM:PF10013.8	excisionase-and-transcriptional-regulator	MAEQQSILSESASLELANGILKLAEQIAQRKIEQQQKRWATQTELRKLYRCTHSDITEWERLGLTKRKQGRSYYYDLKEVEEFLLSQKK*	phrogs_hmm	hypothetical_protein	C1	10784	30428	41212	GCA_001051895.1|LFKS01000013.1@region_30429_41212@tool_cenote_CDS_0013	shell	direct	high	269	0.996	GCA_001051895.1_00890
GCA_001051895.1|LFKS01000013.1@region_30429_41212@tool_cenote	cenote	CDS	37213	37413	GCA_001051895.1	LFKS01000013.1	GCA_001051895.1|LFKS01000013.1	GCA_001051895.1_LFKS01000013.1	GCA_001051895.1|LFKS01000013.1	GCA_001051895_1_11	GCA_001051895_1_11@C1	6786	6986	GCA_001051895_1_11_39	GCA_001051895_1_11_39	-	819173	.	PFAM:PF10078.8	transcriptional-regulator	MKNNLSMLMGKKKINTTKLSEETGISRNAIYGLYHERTINPDLQNLIKLCEYFEVTLNDFFDIKEE*	phrogs_hmm	hypothetical_protein	C1	10784	30428	41212	GCA_001051895.1|LFKS01000013.1@region_30429_41212@tool_cenote_CDS_0014	cloud	direct	high	200	0.995	GCA_001051895.1_00891
GCA_001051895.1|LFKS01000013.1@region_30429_41212@tool_cenote	cenote	CDS	37555	38310	GCA_001051895.1	LFKS01000013.1	GCA_001051895.1|LFKS01000013.1	GCA_001051895.1_LFKS01000013.1	GCA_001051895.1|LFKS01000013.1	GCA_001051895_1_11	GCA_001051895_1_11@C1	7128	7883	GCA_001051895_1_11_40	GCA_001051895_1_11_40	+	819173	.	PFAM:PF13744.5	transcriptional-repressor	MNFGEILKKEREGFGISVKKLSELSSVSTTYISKLENNKRNFPTAEIIYNLLFGFKNLIEERYGTTKNISEVNSSYLKEILDKFINADDSNLKQKNIDLMYQYFDDFYNEKMQTIMNDNSQIEESIFLNKIQIEKGTTNKKELDKPYFDLNWLLKQKDFEIFYGRDFIFDKNINNKKTLNEREMYFYNILNEQDIETIKKLIETFLENKYSRVKQDKVNELFNMFTNKQNIENNQFNNSLTYFELLKNMRI*	phrogs_hmm	hypothetical_protein	C1	10784	30428	41212	GCA_001051895.1|LFKS01000013.1@region_30429_41212@tool_cenote_CDS_0015	cloud	direct	high	755	0.999	GCA_001051895.1_00892
GCA_001051895.1|LFKS01000013.1@region_30429_41212@tool_cenote	cenote	CDS	38436	39572	GCA_001051895.1	LFKS01000013.1	GCA_001051895.1|LFKS01000013.1	GCA_001051895.1_LFKS01000013.1	GCA_001051895.1|LFKS01000013.1	GCA_001051895_1_11	GCA_001051895_1_11@C1	8009	9145	GCA_001051895_1_11_41	GCA_001051895_1_11_41	+	819173	.	PDB:1Z19_B	Integrase	MIKKYKKKDGSTAYMFVAYLGVDPITRKQKRTTRRGFKTEREAKIAEAKLQTEVQANGFLNTEIMTFKQIYELWLEQYRNTVKESTYQQAMTTFKMMILPHFKDMAIKDITVPHCQKVLNEWYRTYSETKKGRIYASTVFEYAISLKIITDNPFNHIKAPRKKSNQKHETMKYYTSDELQQFLELVKDNVLHHALFRTLAFTGIRRGELMALTWNDIDFTNQTLSVNKTLAEGLNHRQFIDTPKTRSSIRTISVDSKTLEVLKEWRTQQRVLSLKHGHNTSSKHQEIFTNVETNKRLNRVYANETLNLICKKNNFKRITVHGFRHTHCSLLFEAGLSVQEVQDRLGHGDIQTTMGIYAHVTEKQREKVAEKFANYVSF*	common_virus_hmm	common_virus	C1	10784	30428	41212	GCA_001051895.1|LFKS01000013.1@region_30429_41212@tool_cenote_CDS_0016	shell	direct	high	1136	0.999	GCA_001051895.1_00893
GCA_001051895.1|LFKS01000013.1@region_30429_41212@tool_cenote	cenote	CDS	39652	39894	GCA_001051895.1	LFKS01000013.1	GCA_001051895.1|LFKS01000013.1	GCA_001051895.1_LFKS01000013.1	GCA_001051895.1|LFKS01000013.1	GCA_001051895_1_11	GCA_001051895_1_11@C1	9225	9467	GCA_001051895_1_11_42	GCA_001051895_1_11_42	-	819173	.	TIGR00394	phosphotransferase system, lactose specific, IIC component. This family of proteins models the IIC domain of the phosphotransferase system (PTS) for lactose. The IIC domain catalyzes the transfer of a phosphoryl group from the IIB domain to lactose. When the IIC component and IIB components are in the same polypeptide chain they are designated IIBC. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]	MNKLIAWIEKGKPFFEKISRNIYLRAIRDGFIAAIPIILFSSIFILITYVPNVFGFTWSKTMEGILMKPYNYTMGIVGIS*	mmseqs_cdd	nonviral_gene	C1	10784	30428	41212	GCA_001051895.1|LFKS01000013.1@region_30429_41212@tool_cenote_CDS_0017	persistent	direct	high	242	0.996	GCA_001051895.1_00894
GCA_001051895.1|LFKS01000013.1@region_30429_41212@tool_cenote	cenote	CDS	39900	40214	GCA_001051895.1	LFKS01000013.1	GCA_001051895.1|LFKS01000013.1	GCA_001051895.1_LFKS01000013.1	GCA_001051895.1|LFKS01000013.1	GCA_001051895_1_11	GCA_001051895_1_11@C1	9473	9787	GCA_001051895_1_11_43	GCA_001051895_1_11_43	-	819173	.	TIGR00823	phosphotransferase system enzyme II, lactose-specific, factor III. The PTS Lactose-N,N?-Diacetylchitobiose-b-glucoside (Lac) Family (TC 4.A.3)Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as the E. coli N,N?-diacetylchitobiose (Chb)permease which can transport aromatic b-glucosides and cellobiose as well as the chitin disaccharide, Chb, but only Chb induces expression of the chboperon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]	MNREEVQLLGFEIVAYAGDARSKLLEALNAANEGDFEKAEQLTEEANECIANAHKAQTNLLAQEAQGDDIAFSITMIHGQDHLMTTLLLKDLMKHLIELYKKGS*	mmseqs_cdd	nonviral_gene	C1	10784	30428	41212	GCA_001051895.1|LFKS01000013.1@region_30429_41212@tool_cenote_CDS_0018	persistent	direct	high	314	0.997	GCA_001051895.1_00895
GCA_001051895.1|LFKS01000013.1@region_30429_41212@tool_cenote	cenote	CDS	40234	41211	GCA_001051895.1	LFKS01000013.1	GCA_001051895.1|LFKS01000013.1	GCA_001051895.1_LFKS01000013.1	GCA_001051895.1|LFKS01000013.1	GCA_001051895_1_11	GCA_001051895_1_11@C1	9807	10784	GCA_001051895_1_11_44	GCA_001051895_1_11_44	-	819173	.	TIGR01232	tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation. [Energy metabolism, Biosynthesis and degradation of polysaccharides]	MTKSQQKLASIEQLSNQDGIISALAFDQRGALKRMMAEHQTEPPTVEQIEQLKVLVSEELTQYASSILLDPEYGLPASDARNKECGLLLAYEKTGYDVNAKGRLPDCLVEWSAKRLKEQGANAVKFLLYYDVDDSEEINIQKKAYIERIGSECVAEDIPFFLEVLTYDDNIPDNKSAEFAKVKPRKVNEAMKLFSEDRFNVDVLKVEVPVNMNFVEGFTEGEVVYTKEEAAQHFRDQDAATHLPYIYLSAGVSAELFQDTLTFAHDAGAHFNGVLCGRATWSGAVKVYIEQGEQAAREWLRTTGYKNIDDLNKVLKTTATSWKAK*	mmseqs_cdd	nonviral_gene	C1	10784	30428	41212	GCA_001051895.1|LFKS01000013.1@region_30429_41212@tool_cenote_CDS_0019	persistent	direct	high	977	0.999	GCA_001051895.1_00896
GCA_001051895.1|LFKS01000012.1@region_7516_21577@tool_cenote	cenote	CDS	7515	8117	GCA_001051895.1	LFKS01000012.1	GCA_001051895.1|LFKS01000012.1	GCA_001051895.1_LFKS01000012.1	GCA_001051895.1|LFKS01000012.1	GCA_001051895_1_8	GCA_001051895_1_8@C1	1	603	GCA_001051895_1_8_10	GCA_001051895_1_8_10	-	106533	.	.	hypothetical protein	MPRFNSNVTSKKRKKNVHIEIVNKDFLPTRNEFKIDRVEKQLKDSPDSEIVFFNDSIIFSKQNTNLKFTNFISNEKQQYQINAISHFSSDISMIKSIEANTVNYNERMLSIISLYLKEDVQKIMGLMKSDIKSLLDLQEGLRVYWYYDLEDKEIKIVCIDPQHLVLPSKHNGMSKEEMMIKTFNAVTNSKKHCISQYFIN*	.	hypothetical_protein	C1	14062	7515	21577	GCA_001051895.1|LFKS01000012.1@region_7516_21577@tool_cenote_CDS_0001	cloud	direct	high	602	0.998	GCA_001051895.1_00633
GCA_001051895.1|LFKS01000012.1@region_7516_21577@tool_cenote	cenote	CDS	8110	8619	GCA_001051895.1	LFKS01000012.1	GCA_001051895.1|LFKS01000012.1	GCA_001051895.1_LFKS01000012.1	GCA_001051895.1|LFKS01000012.1	GCA_001051895_1_8	GCA_001051895_1_8@C1	596	1105	GCA_001051895_1_8_11	GCA_001051895_1_8_11	-	106533	.	COG3600	Uncharacterized phage-associated protein  [Mobilome: prophages, transposons]. 	MTEKKHLTTVENIIALMKEEIENISPLRLQKTLYFLFAYYGASYGQLSKSKEYKVTQNESLNLPEYLFDAQFEAWQYGPVIRDVYVSNKYSLDYNDIDFSMSNFEIEDKTMQQEITEYLREIIKSTLKISDFGLVERSHEDKEWKNNITHQEVMNNDLIIKEYIGLVNA*	mmseqs_cdd	nonviral_gene	C1	14062	7515	21577	GCA_001051895.1|LFKS01000012.1@region_7516_21577@tool_cenote_CDS_0002	cloud	direct	high	509	0.998	GCA_001051895.1_00634
GCA_001051895.1|LFKS01000012.1@region_7516_21577@tool_cenote	cenote	CDS	10012	10275	GCA_001051895.1	LFKS01000012.1	GCA_001051895.1|LFKS01000012.1	GCA_001051895.1_LFKS01000012.1	GCA_001051895.1|LFKS01000012.1	GCA_001051895_1_8	GCA_001051895_1_8@C1	2498	2761	GCA_001051895_1_8_12	GCA_001051895_1_8_12	-	106533	.	.	hypothetical protein	MAKALMLIITIVCIAYIVYNFIKDKPVINIFFALIIQSTLLFLIRFFWIKQSFSKSLLSSFDLFSITFVVIYLIYKLRKRRKEKEDK*	.	hypothetical_protein	C1	14062	7515	21577	GCA_001051895.1|LFKS01000012.1@region_7516_21577@tool_cenote_CDS_0003	shell	direct	high	263	0.996	GCA_001051895.1_00635
GCA_001051895.1|LFKS01000012.1@region_7516_21577@tool_cenote	cenote	CDS	10452	10628	GCA_001051895.1	LFKS01000012.1	GCA_001051895.1|LFKS01000012.1	GCA_001051895.1_LFKS01000012.1	GCA_001051895.1|LFKS01000012.1	GCA_001051895_1_8	GCA_001051895_1_8@C1	2938	3114	GCA_001051895_1_8_13	GCA_001051895_1_8_13	+	106533	.	.	hypothetical protein	MKYRLIAVVIFAIIVLIATFYIQPMLNTDNQLINLVYVVFLFVVGAILGYIGRRLDSK*	.	hypothetical_protein	C1	14062	7515	21577	GCA_001051895.1|LFKS01000012.1@region_7516_21577@tool_cenote_CDS_0004	shell	direct	high	176	0.994	GCA_001051895.1_00636
GCA_001051895.1|LFKS01000012.1@region_7516_21577@tool_cenote	cenote	CDS	11423	11653	GCA_001051895.1	LFKS01000012.1	GCA_001051895.1|LFKS01000012.1	GCA_001051895.1_LFKS01000012.1	GCA_001051895.1|LFKS01000012.1	GCA_001051895_1_8	GCA_001051895_1_8@C1	3909	4139	GCA_001051895_1_8_14	GCA_001051895_1_8_14	-	106533	.	.	hypothetical protein	MKTITKILDALTYICVGLLFLKYAVMSANMMFDWHLRWYFLEDIPHMALILFIMMFVFAVPSEMIKDKLKKEKKQV*	.	hypothetical_protein	C1	14062	7515	21577	GCA_001051895.1|LFKS01000012.1@region_7516_21577@tool_cenote_CDS_0005	shell	direct	high	230	0.996	GCA_001051895.1_00637
GCA_001051895.1|LFKS01000012.1@region_7516_21577@tool_cenote	cenote	CDS	12573	13001	GCA_001051895.1	LFKS01000012.1	GCA_001051895.1|LFKS01000012.1	GCA_001051895.1_LFKS01000012.1	GCA_001051895.1|LFKS01000012.1	GCA_001051895_1_8	GCA_001051895_1_8@C1	5059	5487	GCA_001051895_1_8_15	GCA_001051895_1_8_15	-	106533	.	PFAM:PF03592.15	Terminase-small-subunit	MKSLTLKQKQFADEYIRTGNAYQSAVNAGYSVSYARGNAIKLLENVSINQYIDDNLEIIQKESIAEADEIMRYLTRVLRAEEKEEILVYVGEGMQEIQTIQPSAKDRIKAAELLGKRYRMWTDKHEIEVTAPIFIDDVPEED*	hallmark_hmm	common_virus	C1	14062	7515	21577	GCA_001051895.1|LFKS01000012.1@region_7516_21577@tool_cenote_CDS_0006	shell	direct	high	428	0.998	GCA_001051895.1_00638
GCA_001051895.1|LFKS01000012.1@region_7516_21577@tool_cenote	cenote	CDS	13027	13266	GCA_001051895.1	LFKS01000012.1	GCA_001051895.1|LFKS01000012.1	GCA_001051895.1_LFKS01000012.1	GCA_001051895.1|LFKS01000012.1	GCA_001051895_1_8	GCA_001051895_1_8@C1	5513	5752	GCA_001051895_1_8_16	GCA_001051895_1_8_16	-	106533	.	PFAM:PF03592.15	Terminase-small-subunit	MKKLTTKQRRFAEEYIETGNPYYSAIKVGYSEVYARDNALKLLENISVKSYIHERLEEIKNDNMTEKYGVMRYLTRLIK*	hallmark_hmm	common_virus	C1	14062	7515	21577	GCA_001051895.1|LFKS01000012.1@region_7516_21577@tool_cenote_CDS_0007	shell	direct	high	239	0.996	GCA_001051895.1_00639
GCA_001051895.1|LFKS01000012.1@region_7516_21577@tool_cenote	cenote	CDS	13321	13842	GCA_001051895.1	LFKS01000012.1	GCA_001051895.1|LFKS01000012.1	GCA_001051895.1_LFKS01000012.1	GCA_001051895.1|LFKS01000012.1	GCA_001051895_1_8	GCA_001051895_1_8@C1	5807	6328	GCA_001051895_1_8_17	GCA_001051895_1_8_17	-	106533	.	PFAM:PF09979.8	head-maturation-protease	MKTLKQIEVHKKNIESYQKDIQALEQEVNNEKEKIDQLNKDYQELVVSDQVEKADKLYTKIDKQETTHKAKVKRLSVMKQSLKQVIIKNCSSMQEEADKLSDEYIDIYYDDLKHYNKLKEELKQAEQKLEEYNNSYLLKQRNLSHYIDRLIRENNIQPTEYMGTVNSHKPFYI*	phrogs_hmm	hypothetical_protein	C1	14062	7515	21577	GCA_001051895.1|LFKS01000012.1@region_7516_21577@tool_cenote_CDS_0008	shell	direct	high	521	0.998	GCA_001051895.1_00640
GCA_001051895.1|LFKS01000012.1@region_7516_21577@tool_cenote	cenote	CDS	13854	14087	GCA_001051895.1	LFKS01000012.1	GCA_001051895.1|LFKS01000012.1	GCA_001051895.1_LFKS01000012.1	GCA_001051895.1|LFKS01000012.1	GCA_001051895_1_8	GCA_001051895_1_8@C1	6340	6573	GCA_001051895_1_8_18	GCA_001051895_1_8_18	-	106533	.	.	hypothetical protein	MNNDEMNKLSEALELSESQRLALYSYSERQAKEKAQSQEQKKELSSLEKHEKRQQIMSIKDTNQRQEEIAKHVELFK*	.	hypothetical_protein	C1	14062	7515	21577	GCA_001051895.1|LFKS01000012.1@region_7516_21577@tool_cenote_CDS_0009	shell	direct	high	233	0.996	GCA_001051895.1_00641
GCA_001051895.1|LFKS01000012.1@region_7516_21577@tool_cenote	cenote	CDS	14077	14919	GCA_001051895.1	LFKS01000012.1	GCA_001051895.1|LFKS01000012.1	GCA_001051895.1_LFKS01000012.1	GCA_001051895.1|LFKS01000012.1	GCA_001051895_1_8	GCA_001051895_1_8@C1	6563	7405	GCA_001051895_1_8_19	GCA_001051895_1_8_19	-	106533	.	PFAM:PF05263.10	spore-coat-protein	MASLKQAYQPETDTEDIEMVSDYTLFTLYNPKFIEKKAENIREGIETLYERNKPHMASDNITGILYYESVNIEHLAIQIIEEKEKLESYLKKSNRNLYHLYVVLDTYTDEERTLLMNYIKHAKVRDNELVRRFKIDLYNYVQAEREKRQEEHNKKSFNAYLVDKDEVRKRQQKKKINNGYGLTLNQEKELRLIKEHEAERNTDMGIFIDLIQQMNNDELLSYVLDRHEFNIDSYNLKILTDAALYRLPLKQRKQAYNHLKAIARTLINNPIEKRLKRYEQ*	phrogs_hmm	hypothetical_protein	C1	14062	7515	21577	GCA_001051895.1|LFKS01000012.1@region_7516_21577@tool_cenote_CDS_0010	shell	direct	high	842	0.999	GCA_001051895.1_00642
GCA_001051895.1|LFKS01000012.1@region_7516_21577@tool_cenote	cenote	CDS	14973	15770	GCA_001051895.1	LFKS01000012.1	GCA_001051895.1|LFKS01000012.1	GCA_001051895.1_LFKS01000012.1	GCA_001051895.1|LFKS01000012.1	GCA_001051895_1_8	GCA_001051895_1_8@C1	7459	8256	GCA_001051895_1_8_20	GCA_001051895_1_8_20	-	106533	.	PDB:4M4W_K	Replicative-helicase	MKSINDIDLKSKMRSELIEEQYNLKCDKCKNIYSYHKFRKSDGTIQIIRNGCECESIEKGKQSRSQHKANQKRLNIEKVFKQSMMNDDLLKAEFDNYKPTNKNLLETKQILQKYVANFKPDKPKSLLLQGSYGIGKSHLAMSVVREVKKKGYTALFLDVTELVKAYRNTYNKNVAMTEKELDQMIRDVDLLVIDDYGTTVNDYGNEKLFSLTDMRTGKSNIITTNREALELSNNDDKAKRFSRLMKNTQIIKMHGTDYRLKDFKA*	rep_hall_hmm	common_virus	C1	14062	7515	21577	GCA_001051895.1|LFKS01000012.1@region_7516_21577@tool_cenote_CDS_0011	shell	direct	high	797	0.999	GCA_001051895.1_00643
GCA_001051895.1|LFKS01000012.1@region_7516_21577@tool_cenote	cenote	CDS	15783	16541	GCA_001051895.1	LFKS01000012.1	GCA_001051895.1|LFKS01000012.1	GCA_001051895.1_LFKS01000012.1	GCA_001051895.1|LFKS01000012.1	GCA_001051895_1_8	GCA_001051895_1_8@C1	8269	9027	GCA_001051895_1_8_21	GCA_001051895_1_8_21	-	106533	.	PFAM:PF06926.10	replisome-organiser-protein	MEQPSYYAILTASVRYDNRLTDSEKILYAEITALSNKYGYCSASNNYFDKLYEVSKRTISTRINNLKKLNYLKIELELNGKEVKKRKMYPMTHTSIPIEDNFHRGVENMVHTPIEANFQENITSNNITRLNNTSSSSASTTKQQPPSHSYSNVFNFYQENGFGILQPFVIDQINAWIDDFNGNENIVIEALKEAATNNVCKWSYANSILKSWYQDGIKSIDDIEARRKQRETSKNKTESTKTFDNSQYADLF*	rep_hall_hmm	common_virus	C1	14062	7515	21577	GCA_001051895.1|LFKS01000012.1@region_7516_21577@tool_cenote_CDS_0012	cloud	direct	high	758	0.999	GCA_001051895.1_00644
GCA_001051895.1|LFKS01000012.1@region_7516_21577@tool_cenote	cenote	CDS	16577	16801	GCA_001051895.1	LFKS01000012.1	GCA_001051895.1|LFKS01000012.1	GCA_001051895.1_LFKS01000012.1	GCA_001051895.1|LFKS01000012.1	GCA_001051895_1_8	GCA_001051895_1_8@C1	9063	9287	GCA_001051895_1_8_22	GCA_001051895_1_8_22	-	106533	.	PFAM:PF04492.12	DnaD-like-helicase-loader	MTNKIKCSKGYGVITQSVMSSKDISIEAKALYCYYMAHVGDNFIPSATQTCNDLMISYKRFKTLRTQLFERGFL*	phrogs_hmm	hypothetical_protein	C1	14062	7515	21577	GCA_001051895.1|LFKS01000012.1@region_7516_21577@tool_cenote_CDS_0013	shell	direct	high	224	0.996	GCA_001051895.1_00645
GCA_001051895.1|LFKS01000012.1@region_7516_21577@tool_cenote	cenote	CDS	16855	17106	GCA_001051895.1	LFKS01000012.1	GCA_001051895.1|LFKS01000012.1	GCA_001051895.1_LFKS01000012.1	GCA_001051895.1|LFKS01000012.1	GCA_001051895_1_8	GCA_001051895_1_8@C1	9341	9592	GCA_001051895_1_8_23	GCA_001051895_1_8_23	-	106533	.	.	hypothetical protein	MKLFKKKYDHKKVNKVKDMILYTSYSFEAKAYEEAIELLKDNNKQKAIELMYERLIEAQRKEYEMKLEIEKASSVHASQRRNR*	.	hypothetical_protein	C1	14062	7515	21577	GCA_001051895.1|LFKS01000012.1@region_7516_21577@tool_cenote_CDS_0014	shell	direct	high	251	0.996	GCA_001051895.1_00646
GCA_001051895.1|LFKS01000012.1@region_7516_21577@tool_cenote	cenote	CDS	17441	17710	GCA_001051895.1	LFKS01000012.1	GCA_001051895.1|LFKS01000012.1	GCA_001051895.1_LFKS01000012.1	GCA_001051895.1|LFKS01000012.1	GCA_001051895_1_8	GCA_001051895_1_8@C1	9927	10196	GCA_001051895_1_8_24	GCA_001051895_1_8_24	-	106533	.	PFAM:PF10013.8	excisionase-and-transcriptional-regulator	MAEQQPILSESASLELANGILKLAEQIAQRKIEQQQKRWATQTELRKLYRCTHSDITEWERLGLTKRKQGRSYYYDLKEVEEFLLSQKK*	phrogs_hmm	hypothetical_protein	C1	14062	7515	21577	GCA_001051895.1|LFKS01000012.1@region_7516_21577@tool_cenote_CDS_0015	shell	direct	high	269	0.996	GCA_001051895.1_00648
GCA_001051895.1|LFKS01000012.1@region_7516_21577@tool_cenote	cenote	CDS	17744	17944	GCA_001051895.1	LFKS01000012.1	GCA_001051895.1|LFKS01000012.1	GCA_001051895.1_LFKS01000012.1	GCA_001051895.1|LFKS01000012.1	GCA_001051895_1_8	GCA_001051895_1_8@C1	10230	10430	GCA_001051895_1_8_25	GCA_001051895_1_8_25	-	106533	.	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain  [Transcription]. 	MENKVKGYRCSLGLTQKKMADILGMSTNSYASKENGKSDFKVKEINKFINFMKKNNIIVDKEIFLQ*	mmseqs_cdd	nonviral_gene	C1	14062	7515	21577	GCA_001051895.1|LFKS01000012.1@region_7516_21577@tool_cenote_CDS_0016	cloud	direct	high	200	0.995	GCA_001051895.1_00649
GCA_001051895.1|LFKS01000012.1@region_7516_21577@tool_cenote	cenote	CDS	18069	18674	GCA_001051895.1	LFKS01000012.1	GCA_001051895.1|LFKS01000012.1	GCA_001051895.1_LFKS01000012.1	GCA_001051895.1|LFKS01000012.1	GCA_001051895_1_8	GCA_001051895_1_8@C1	10555	11160	GCA_001051895_1_8_26	GCA_001051895_1_8_26	+	106533	.	PFAM:PF13744.5	transcriptional-repressor	MKSAKEVGQTIKLIRIGKKLSQKDFSKKIETTVSALSNWENGRNYPKDDYLINISNIFNVPLDIFKYSTKERVTEIVNSLEKRVNENDNYKILYSPKVKNEIIEKATLITDKQQENYNGLLNFSTKQDILNTLNDLIIDENITIGYNFENDNEVFNFIDTELRNFTSKNIKLLISKNANHDLVAKIENELYNAIDNIDKLR*	phrogs_hmm	hypothetical_protein	C1	14062	7515	21577	GCA_001051895.1|LFKS01000012.1@region_7516_21577@tool_cenote_CDS_0017	cloud	direct	high	605	0.998	GCA_001051895.1_00650
GCA_001051895.1|LFKS01000012.1@region_7516_21577@tool_cenote	cenote	CDS	18775	19008	GCA_001051895.1	LFKS01000012.1	GCA_001051895.1|LFKS01000012.1	GCA_001051895.1_LFKS01000012.1	GCA_001051895.1|LFKS01000012.1	GCA_001051895_1_8	GCA_001051895_1_8@C1	11261	11494	GCA_001051895_1_8_27	GCA_001051895_1_8_27	+	106533	.	.	hypothetical protein	MYFNDWKVTINGKGSHDVVTNEDTLLILQDYQHVEIALKLVNDTIQVKSLGYGEDVSINPTTKEITVNVTNLLEDDE*	.	hypothetical_protein	C1	14062	7515	21577	GCA_001051895.1|LFKS01000012.1@region_7516_21577@tool_cenote_CDS_0018	shell	direct	high	233	0.996	GCA_001051895.1_00651
GCA_001051895.1|LFKS01000012.1@region_7516_21577@tool_cenote	cenote	CDS	19030	19503	GCA_001051895.1	LFKS01000012.1	GCA_001051895.1|LFKS01000012.1	GCA_001051895.1_LFKS01000012.1	GCA_001051895.1|LFKS01000012.1	GCA_001051895_1_8	GCA_001051895_1_8@C1	11516	11989	GCA_001051895_1_8_28	GCA_001051895_1_8_28	+	106533	.	.	hypothetical protein	MELKLTDKEANDLLFLSKEILERYNIKLEENCKGEINITSPKVPTKFILNYFIRPGKATLNFRETQYNTCLLRINLNDGFHKNSNNDIVRGNRINIFSEKEYKNKNDLSTHMVAYPLPYKIFEDSSDFVKQLFSVLRYTNTNHNDKIYIETKFQLGW*	.	hypothetical_protein	C1	14062	7515	21577	GCA_001051895.1|LFKS01000012.1@region_7516_21577@tool_cenote_CDS_0019	cloud	direct	high	473	0.998	GCA_001051895.1_00652
GCA_001051895.1|LFKS01000012.1@region_7516_21577@tool_cenote	cenote	CDS	19508	20299	GCA_001051895.1	LFKS01000012.1	GCA_001051895.1|LFKS01000012.1	GCA_001051895.1_LFKS01000012.1	GCA_001051895.1|LFKS01000012.1	GCA_001051895_1_8	GCA_001051895_1_8@C1	11994	12785	GCA_001051895_1_8_29	GCA_001051895_1_8_29	+	106533	.	PF08862.10	Domain of unknown function DUF1829	MNDNEIKSISEDYFNYLKKESKFVPLENESIEFYSPIVDYFGDSISVNISNNIDNYLLTDYGETLWNLEQLGIDLTSHKKQKKYQFLKNIIESNNLVLENKKIQQYIDRKKLPQAIHDYVLAISEISNLAILKKDNIKSLFRDEVIQYFLKNRETYPNVFIEFKVEGKSKLTHNFEAVFPGKTTEYVKTIKQINKNSAKNLLFDWEDVEEYRSKMYDSNARLNIITENEDEISDSVATMLSRYNVEVLPFDDKRKIKRKFSNL*	hhsuite_tools	nonviral_gene	C1	14062	7515	21577	GCA_001051895.1|LFKS01000012.1@region_7516_21577@tool_cenote_CDS_0020	cloud	direct	high	791	0.999	GCA_001051895.1_00653
GCA_001051895.1|LFKS01000012.1@region_7516_21577@tool_cenote	cenote	CDS	20440	21576	GCA_001051895.1	LFKS01000012.1	GCA_001051895.1|LFKS01000012.1	GCA_001051895.1_LFKS01000012.1	GCA_001051895.1|LFKS01000012.1	GCA_001051895_1_8	GCA_001051895_1_8@C1	12926	14062	GCA_001051895_1_8_30	GCA_001051895_1_8_30	+	106533	.	PDB:1Z19_B	Integrase	MIKKYKKKDGSTAYMFVAYLGVDPITRKQKRTTRRGFKTEREAKIAEAKLQTEIQSKGFLNTDITTFKQVYELWIEQYKCTVRESTFVRVSNMFKIKILKEFDNMPIQSITTPYCQKVINYWIENYKDFRNIKVYAANVFEYAVMLKIIHENPFKYTKLPKRTRNKSNEHLTYYSSDELKQFLELIKDDLMYYAMFRLLGFTGMRRGELMALTWEDINFKNKTISIDKTVTIGLNSKEIIQPPKTHSSIRVISIDDRTLSILKNWRVEQRKLCLMHGHNTSNKSQCLFTNLRTNKRLQVQHPNKAMDKICKKYNFKKIKIHGFRHTHCSLLFEAGLSIQEVQDRLGHGDINTTMDVYAHITEKQREKVAEKFANYISF*	common_virus_hmm	common_virus	C1	14062	7515	21577	GCA_001051895.1|LFKS01000012.1@region_7516_21577@tool_cenote_CDS_0021	shell	direct	high	1136	0.999	GCA_001051895.1_00654