core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_001051905.1|LFKQ01000002.1@region_30400_41183@tool_cenote	cenote	CDS	30399	30746	GCA_001051905.1	LFKQ01000002.1	GCA_001051905.1|LFKQ01000002.1	GCA_001051905.1_LFKQ01000002.1	GCA_001051905.1|LFKQ01000002.1	GCA_001051905_1_15	GCA_001051905_1_15@C1	1	348	GCA_001051905_1_15_26	GCA_001051905_1_15_26	-	577349	.	NF033788	metalloregulator ArsR/SmtB family transcription factor. Transcriptional repressors that sense toxic heavy metals such as arsenic or cadmium, and are released from DNA so that resistance factors will be expressed, include ArsR, SmtB, ZiaR, CadC, CadX, KmtR, etc. However, some members of this family, including the sporulation delaying system autorepressor SdpR and its family (see NF033789), may lack metal-binding cites and instead regulate other cellular processes.	MSYENACDVICVHEDKVNNALSFLEDDKSKKLLNILEKICDEKKLKIILSLIKEDELCVCDISLILKMSVASTSHHLRLLYKNEVLDFYKDGKMAYYFIKDDEIREFFSKNQKGF*	mmseqs_cdd	nonviral_gene	C1	10784	30399	41183	GCA_001051905.1|LFKQ01000002.1@region_30400_41183@tool_cenote_CDS_0001	shell	direct	high	347	0.997	GCA_001051905.1_01327
GCA_001051905.1|LFKQ01000002.1@region_30400_41183@tool_cenote	cenote	CDS	30765	31382	GCA_001051905.1	LFKQ01000002.1	GCA_001051905.1|LFKQ01000002.1	GCA_001051905.1_LFKQ01000002.1	GCA_001051905.1|LFKQ01000002.1	GCA_001051905_1_15	GCA_001051905_1_15@C1	367	984	GCA_001051905_1_15_27	GCA_001051905_1_15_27	-	577349	.	pfam03596	Cadmium resistance transporter. 	MIQTIVTAAILYIATALDLLVILLMFFARAKTRKEYRDIYIGQYVGSVALIVISLFFAFVLNYVPEKWILGLLGLIPIYLGIKVAIYGDSDGEERAKKELNEKGLSKLVGTIAIVTIASCGADNIGLFVPYFVTLSVTNLLITLFVFLILIFFLVFTAQKLANIPGVGEIVEKFGRWIMAVIYIALGLFIIIENDTIQTILGFIF*	mmseqs_cdd	nonviral_gene	C1	10784	30399	41183	GCA_001051905.1|LFKQ01000002.1@region_30400_41183@tool_cenote_CDS_0002	persistent	direct	high	617	0.998	GCA_001051905.1_01328
GCA_001051905.1|LFKQ01000002.1@region_30400_41183@tool_cenote	cenote	CDS	31599	32027	GCA_001051905.1	LFKQ01000002.1	GCA_001051905.1|LFKQ01000002.1	GCA_001051905.1_LFKQ01000002.1	GCA_001051905.1|LFKQ01000002.1	GCA_001051905_1_15	GCA_001051905_1_15@C1	1201	1629	GCA_001051905_1_15_28	GCA_001051905_1_15_28	-	577349	.	PFAM:PF03592.15	Terminase-small-subunit	MKSLTLKQKQFADEYIRTGNAYQSAVNAGYSVSYARGNAIKLLENVSINQYIDDNLEIIQKESIAETDEIMRYLTRVLRAEEREEILVYVGDGMQEIQTIQPSTKDRIKAAELLGKRYRMWTDKHEVEITTPIFIDDVPEED*	hallmark_hmm	common_virus	C1	10784	30399	41183	GCA_001051905.1|LFKQ01000002.1@region_30400_41183@tool_cenote_CDS_0003	shell	direct	high	428	0.998	GCA_001051905.1_01329
GCA_001051905.1|LFKQ01000002.1@region_30400_41183@tool_cenote	cenote	CDS	32053	32292	GCA_001051905.1	LFKQ01000002.1	GCA_001051905.1|LFKQ01000002.1	GCA_001051905.1_LFKQ01000002.1	GCA_001051905.1|LFKQ01000002.1	GCA_001051905_1_15	GCA_001051905_1_15@C1	1655	1894	GCA_001051905_1_15_29	GCA_001051905_1_15_29	-	577349	.	PFAM:PF03592.15	Terminase-small-subunit	MKKLTTKQRRFADEYIETGNPYYSALKVGYSKVYARDNALKLLENVSVKSYIHERLEEIKNDNMAENYGVMRYLTRLIK*	hallmark_hmm	common_virus	C1	10784	30399	41183	GCA_001051905.1|LFKQ01000002.1@region_30400_41183@tool_cenote_CDS_0004	shell	direct	high	239	0.996	GCA_001051905.1_01330
GCA_001051905.1|LFKQ01000002.1@region_30400_41183@tool_cenote	cenote	CDS	32347	32868	GCA_001051905.1	LFKQ01000002.1	GCA_001051905.1|LFKQ01000002.1	GCA_001051905.1_LFKQ01000002.1	GCA_001051905.1|LFKQ01000002.1	GCA_001051905_1_15	GCA_001051905_1_15@C1	1949	2470	GCA_001051905_1_15_30	GCA_001051905_1_15_30	-	577349	.	PFAM:PF09979.8	head-maturation-protease	MKTLKQIEVHKKNIESYQKDIQALEQEVNSEKEKIDQLNADYQELVVSGQVEKADKLYTKIDKQETTYKAKVKRLSVMKQSLKQVIIKNCSSMQEEADKLSDEYIDIYYDDLQHYNKLKEELKQAEQKLEEHNNSYLLNQRNLSHYIDRLIRENNIQATEFMGSVNSRKPFYI*	phrogs_hmm	hypothetical_protein	C1	10784	30399	41183	GCA_001051905.1|LFKQ01000002.1@region_30400_41183@tool_cenote_CDS_0005	shell	direct	high	521	0.998	GCA_001051905.1_01331
GCA_001051905.1|LFKQ01000002.1@region_30400_41183@tool_cenote	cenote	CDS	32880	33113	GCA_001051905.1	LFKQ01000002.1	GCA_001051905.1|LFKQ01000002.1	GCA_001051905.1_LFKQ01000002.1	GCA_001051905.1|LFKQ01000002.1	GCA_001051905_1_15	GCA_001051905_1_15@C1	2482	2715	GCA_001051905_1_15_31	GCA_001051905_1_15_31	-	577349	.	.	hypothetical protein	MNNDEMNKLSEALELSESQRLALYSYSERQAKEKAQTQEQKKELSSLEKHKKRQQIMSIKDANQRQEEIAKHVELFK*	.	hypothetical_protein	C1	10784	30399	41183	GCA_001051905.1|LFKQ01000002.1@region_30400_41183@tool_cenote_CDS_0006	shell	direct	high	233	0.996	GCA_001051905.1_01332
GCA_001051905.1|LFKQ01000002.1@region_30400_41183@tool_cenote	cenote	CDS	33103	33945	GCA_001051905.1	LFKQ01000002.1	GCA_001051905.1|LFKQ01000002.1	GCA_001051905.1_LFKQ01000002.1	GCA_001051905.1|LFKQ01000002.1	GCA_001051905_1_15	GCA_001051905_1_15@C1	2705	3547	GCA_001051905_1_15_32	GCA_001051905_1_15_32	-	577349	.	PFAM:PF05263.10	spore-coat-protein	MASLKQAYQPDTDAEEIEMISDDTLFTVYNPKFIEEKKQMIEDYIETLYERNTPNMVCDPVTQMVYYQSQNLESLVMYIIEEKKKLNAFIRKSNRNLYHLYAVLDGYTDEERAFLMNYIKHAKVRDNELVRRFKIDFYEHLKVVREKRQEEHNKKSFNAYLVDKDEVRKRQQKKKINNGYGLTLNQEKELRLIKEHEEERNTDMAVFINLIQQMNNDELLSYVLDRHEFNIDSYNLKILTDAALYRLPLKQRKQAYNHLKAITRTLTNNPIEKRLKQYEQ*	phrogs_hmm	hypothetical_protein	C1	10784	30399	41183	GCA_001051905.1|LFKQ01000002.1@region_30400_41183@tool_cenote_CDS_0007	shell	direct	high	842	0.999	GCA_001051905.1_01333
GCA_001051905.1|LFKQ01000002.1@region_30400_41183@tool_cenote	cenote	CDS	33999	34796	GCA_001051905.1	LFKQ01000002.1	GCA_001051905.1|LFKQ01000002.1	GCA_001051905.1_LFKQ01000002.1	GCA_001051905.1|LFKQ01000002.1	GCA_001051905_1_15	GCA_001051905_1_15@C1	3601	4398	GCA_001051905_1_15_33	GCA_001051905_1_15_33	-	577349	.	PDB:4M4W_K	Replicative-helicase	MKSINDIDLKSKMRSELIEEQYNLKCDKCKNIYSYHKFRKSDGTIQIIRNGCECESIEKGKQSRSQHKANQKRLNIEKVFKQSMMNDDLLKAEFDNYKPTNKNLLEAKQILQKYAANFKPDKPKSLLLQGSYGIGKSHLAMSVVREVKKKGYTALFLDVTELVKAYRNTYNKNVAMTEKELDQMIRDVDLLVIDDYGTTVNDYGNEKLFSLTDMRTGKSNIITTNREALELSNNDDKAKRFSRLMKNTQIIKMHGTDYRLKDFKS*	rep_hall_hmm	common_virus	C1	10784	30399	41183	GCA_001051905.1|LFKQ01000002.1@region_30400_41183@tool_cenote_CDS_0008	shell	direct	high	797	0.999	GCA_001051905.1_01334
GCA_001051905.1|LFKQ01000002.1@region_30400_41183@tool_cenote	cenote	CDS	34809	35603	GCA_001051905.1	LFKQ01000002.1	GCA_001051905.1|LFKQ01000002.1	GCA_001051905.1_LFKQ01000002.1	GCA_001051905.1|LFKQ01000002.1	GCA_001051905_1_15	GCA_001051905_1_15@C1	4411	5205	GCA_001051905_1_15_34	GCA_001051905_1_15_34	-	577349	.	PFAM:PF07261.10	DNA-polymerase-B	MSDRLIDYTGGYGNVYKTITKDPNLSIEAKGIYAYLSSYAGGKDVAFPSISLICHELNISEKRFYKHRKELIDKNIISVHRERTNNGFSKSIYTINHHFVHSQNVHVQNDNVRNESVQNVHVQNVGTKKNNIKKNNIKKNKEKKNSSSSASTTKQQPPSHSYSNVFNFYQENGFGILQPFVVDQIENWIDDFNGNENIVIEALKEAATNNVCKWSYANSILKSWYQDGIKSIDDIEARRKQREASKNKTESTKTFDNSQYADLF*	rep_hall_hmm	common_virus	C1	10784	30399	41183	GCA_001051905.1|LFKQ01000002.1@region_30400_41183@tool_cenote_CDS_0009	shell	direct	high	794	0.999	GCA_001051905.1_01335
GCA_001051905.1|LFKQ01000002.1@region_30400_41183@tool_cenote	cenote	CDS	35631	35855	GCA_001051905.1	LFKQ01000002.1	GCA_001051905.1|LFKQ01000002.1	GCA_001051905.1_LFKQ01000002.1	GCA_001051905.1|LFKQ01000002.1	GCA_001051905_1_15	GCA_001051905_1_15@C1	5233	5457	GCA_001051905_1_15_35	GCA_001051905_1_15_35	-	577349	.	PFAM:PF04492.12	DnaD-like-helicase-loader	MTNKIKCSKGYGVITQSVMSSKDISIEAKALYCYYMAHVGDNIIPSATQTCNDLMISYKRFKTLRTQLFERGFL*	phrogs_hmm	hypothetical_protein	C1	10784	30399	41183	GCA_001051905.1|LFKQ01000002.1@region_30400_41183@tool_cenote_CDS_0010	shell	direct	high	224	0.996	GCA_001051905.1_01336
GCA_001051905.1|LFKQ01000002.1@region_30400_41183@tool_cenote	cenote	CDS	35878	36192	GCA_001051905.1	LFKQ01000002.1	GCA_001051905.1|LFKQ01000002.1	GCA_001051905.1_LFKQ01000002.1	GCA_001051905.1|LFKQ01000002.1	GCA_001051905_1_15	GCA_001051905_1_15@C1	5480	5794	GCA_001051905_1_15_36	GCA_001051905_1_15_36	-	577349	.	pfam07342	Protein of unknown function (DUF1474). This family consists of several bacterial proteins of around 100 residues in length. Members of this family seem to be found exclusively in Staphylococcus aureus. The function of this family is unknown.	MNWEQKNILSDLEILKEKLEDLYTTHAWHFDDIYIKREIQTQEETSRYLMEYSENRIQHTQHSDLLHMYLKEFESLLKRFKELDKKETLSAPTKVTDNEELKNY*	mmseqs_cdd	nonviral_gene	C1	10784	30399	41183	GCA_001051905.1|LFKQ01000002.1@region_30400_41183@tool_cenote_CDS_0011	shell	direct	high	314	0.997	GCA_001051905.1_01337
GCA_001051905.1|LFKQ01000002.1@region_30400_41183@tool_cenote	cenote	CDS	36192	36590	GCA_001051905.1	LFKQ01000002.1	GCA_001051905.1|LFKQ01000002.1	GCA_001051905.1_LFKQ01000002.1	GCA_001051905.1|LFKQ01000002.1	GCA_001051905_1_15	GCA_001051905_1_15@C1	5794	6192	GCA_001051905_1_15_37	GCA_001051905_1_15_37	-	577349	.	.	hypothetical protein	MKNLNNKQTEKIIYQLYKDRMNLEEELIFEERFDRDRAIIKVMFERWGMEPEAHDKLAGAIALKYRKVFETYMNVTNLIIHFKTNKLNLTDFASTENLRDLFILQNALNELIANIRNQHKNYIVVHRNGGAK*	.	hypothetical_protein	C1	10784	30399	41183	GCA_001051905.1|LFKQ01000002.1@region_30400_41183@tool_cenote_CDS_0012	cloud	direct	high	398	0.997	GCA_001051905.1_01338
GCA_001051905.1|LFKQ01000002.1@region_30400_41183@tool_cenote	cenote	CDS	36912	37181	GCA_001051905.1	LFKQ01000002.1	GCA_001051905.1|LFKQ01000002.1	GCA_001051905.1_LFKQ01000002.1	GCA_001051905.1|LFKQ01000002.1	GCA_001051905_1_15	GCA_001051905_1_15@C1	6514	6783	GCA_001051905_1_15_38	GCA_001051905_1_15_38	-	577349	.	PFAM:PF10013.8	excisionase-and-transcriptional-regulator	MAEQQSILSESASLELANGILKLAEQIAQRKIEQQQKRWATQTELRKLYRCTHSDITEWERLGLTKRKQGRSYYYDLKEVEEFLLSQKK*	phrogs_hmm	hypothetical_protein	C1	10784	30399	41183	GCA_001051905.1|LFKQ01000002.1@region_30400_41183@tool_cenote_CDS_0013	shell	direct	high	269	0.996	GCA_001051905.1_01340
GCA_001051905.1|LFKQ01000002.1@region_30400_41183@tool_cenote	cenote	CDS	37184	37384	GCA_001051905.1	LFKQ01000002.1	GCA_001051905.1|LFKQ01000002.1	GCA_001051905.1_LFKQ01000002.1	GCA_001051905.1|LFKQ01000002.1	GCA_001051905_1_15	GCA_001051905_1_15@C1	6786	6986	GCA_001051905_1_15_39	GCA_001051905_1_15_39	-	577349	.	PFAM:PF10078.8	transcriptional-regulator	MKNNLSMLMGKKKINTTKLSEETGISRNAIYGLYHERTINPDLQNLIKLCEYFEVTLNDFFDIKEE*	phrogs_hmm	hypothetical_protein	C1	10784	30399	41183	GCA_001051905.1|LFKQ01000002.1@region_30400_41183@tool_cenote_CDS_0014	cloud	direct	high	200	0.995	GCA_001051905.1_01341
GCA_001051905.1|LFKQ01000002.1@region_30400_41183@tool_cenote	cenote	CDS	37526	38281	GCA_001051905.1	LFKQ01000002.1	GCA_001051905.1|LFKQ01000002.1	GCA_001051905.1_LFKQ01000002.1	GCA_001051905.1|LFKQ01000002.1	GCA_001051905_1_15	GCA_001051905_1_15@C1	7128	7883	GCA_001051905_1_15_40	GCA_001051905_1_15_40	+	577349	.	PFAM:PF13744.5	transcriptional-repressor	MNFGEILKKEREGFGISVKKLSELSSVSTTYISKLENNKRNFPTAEIIYNLLFGFKNLIEERYGTTKNISEVNSSYLKEILDKFINADDSNLKQKNIDLMYQYFDDFYNEKMQTIMNDNSQIEESIFLNKIQIEKGTTNKKELDKPYFDLNWLLKQKDFEIFYGRDFIFDKNINNKKTLNEREMYFYNILNEQDIETIKKLIETFLENKYSRVKQDKVNELFNMFTNKQNIENNQFNNSLTYFELLKNMRI*	phrogs_hmm	hypothetical_protein	C1	10784	30399	41183	GCA_001051905.1|LFKQ01000002.1@region_30400_41183@tool_cenote_CDS_0015	cloud	direct	high	755	0.999	GCA_001051905.1_01342
GCA_001051905.1|LFKQ01000002.1@region_30400_41183@tool_cenote	cenote	CDS	38407	39543	GCA_001051905.1	LFKQ01000002.1	GCA_001051905.1|LFKQ01000002.1	GCA_001051905.1_LFKQ01000002.1	GCA_001051905.1|LFKQ01000002.1	GCA_001051905_1_15	GCA_001051905_1_15@C1	8009	9145	GCA_001051905_1_15_41	GCA_001051905_1_15_41	+	577349	.	PDB:1Z19_B	Integrase	MIKKYKKKDGSTAYMFVAYLGVDPITRKQKRTTRRGFKTEREAKIAEAKLQTEVQANGFLNTEIMTFKQIYELWLEQYRNTVKESTYQQAMTTFKMMILPHFKDMAIKDITVPHCQKVLNEWYRTYSETKKGRIYASTVFEYAISLKIITDNPFNHIKAPRKKSNQKHETMKYYTSDELQQFLELVKDNVLHHALFRTLAFTGIRRGELMALTWNDIDFTNQTLSVNKTLAEGLNHRQFIDTPKTRSSIRTISVDSKTLEVLKEWRTQQRVLSLKHGHNTSSKHQEIFTNVETNKRLNRVYANETLNLICKKNNFKRITVHGFRHTHCSLLFEAGLSVQEVQDRLGHGDIQTTMGIYAHVTEKQREKVAEKFANYVSF*	common_virus_hmm	common_virus	C1	10784	30399	41183	GCA_001051905.1|LFKQ01000002.1@region_30400_41183@tool_cenote_CDS_0016	shell	direct	high	1136	0.999	GCA_001051905.1_01343
GCA_001051905.1|LFKQ01000002.1@region_30400_41183@tool_cenote	cenote	CDS	39623	39865	GCA_001051905.1	LFKQ01000002.1	GCA_001051905.1|LFKQ01000002.1	GCA_001051905.1_LFKQ01000002.1	GCA_001051905.1|LFKQ01000002.1	GCA_001051905_1_15	GCA_001051905_1_15@C1	9225	9467	GCA_001051905_1_15_42	GCA_001051905_1_15_42	-	577349	.	TIGR00394	phosphotransferase system, lactose specific, IIC component. This family of proteins models the IIC domain of the phosphotransferase system (PTS) for lactose. The IIC domain catalyzes the transfer of a phosphoryl group from the IIB domain to lactose. When the IIC component and IIB components are in the same polypeptide chain they are designated IIBC. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]	MNKLIAWIEKGKPFFEKISRNIYLRAIRDGFIAAIPIILFSSIFILITYVPNVFGFTWSKTMEGILMKPYNYTMGIVGIS*	mmseqs_cdd	nonviral_gene	C1	10784	30399	41183	GCA_001051905.1|LFKQ01000002.1@region_30400_41183@tool_cenote_CDS_0017	persistent	direct	high	242	0.996	GCA_001051905.1_01344
GCA_001051905.1|LFKQ01000002.1@region_30400_41183@tool_cenote	cenote	CDS	39871	40185	GCA_001051905.1	LFKQ01000002.1	GCA_001051905.1|LFKQ01000002.1	GCA_001051905.1_LFKQ01000002.1	GCA_001051905.1|LFKQ01000002.1	GCA_001051905_1_15	GCA_001051905_1_15@C1	9473	9787	GCA_001051905_1_15_43	GCA_001051905_1_15_43	-	577349	.	TIGR00823	phosphotransferase system enzyme II, lactose-specific, factor III. The PTS Lactose-N,N?-Diacetylchitobiose-b-glucoside (Lac) Family (TC 4.A.3)Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as the E. coli N,N?-diacetylchitobiose (Chb)permease which can transport aromatic b-glucosides and cellobiose as well as the chitin disaccharide, Chb, but only Chb induces expression of the chboperon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]	MNREEVQLLGFEIVAYAGDARSKLLEALNAANEGDFEKAEQLTEEANECIANAHKAQTNLLAQEAQGDDIAFSITMIHGQDHLMTTLLLKDLMKHLIELYKKGS*	mmseqs_cdd	nonviral_gene	C1	10784	30399	41183	GCA_001051905.1|LFKQ01000002.1@region_30400_41183@tool_cenote_CDS_0018	persistent	direct	high	314	0.997	GCA_001051905.1_01345
GCA_001051905.1|LFKQ01000002.1@region_30400_41183@tool_cenote	cenote	CDS	40205	41182	GCA_001051905.1	LFKQ01000002.1	GCA_001051905.1|LFKQ01000002.1	GCA_001051905.1_LFKQ01000002.1	GCA_001051905.1|LFKQ01000002.1	GCA_001051905_1_15	GCA_001051905_1_15@C1	9807	10784	GCA_001051905_1_15_44	GCA_001051905_1_15_44	-	577349	.	TIGR01232	tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation. [Energy metabolism, Biosynthesis and degradation of polysaccharides]	MTKSQQKLASIEQLSNQDGIISALAFDQRGALKRMMAEHQTEPPTVEQIEQLKVLVSEELTQYASSILLDPEYGLPASDARNKECGLLLAYEKTGYDVNAKGRLPDCLVEWSAKRLKEQGANAVKFLLYYDVDDSEEINIQKKAYIERIGSECVAEDIPFFLEVLTYDDNIPDNKSAEFAKVKPRKVNEAMKLFSEDRFNVDVLKVEVPVNMNFVEGFTEGEVVYTKEEAAQHFRDQDAATHLPYIYLSAGVSAELFQDTLTFAHDAGAHFNGVLCGRATWSGAVKVYIEQGEQAAREWLRTTGYKNIDDLNKVLKTTATSWKAK*	mmseqs_cdd	nonviral_gene	C1	10784	30399	41183	GCA_001051905.1|LFKQ01000002.1@region_30400_41183@tool_cenote_CDS_0019	persistent	direct	high	977	0.999	GCA_001051905.1_01346
GCA_001051905.1|LFKQ01000011.1@region_276641_290702@tool_cenote	cenote	CDS	276640	277242	GCA_001051905.1	LFKQ01000011.1	GCA_001051905.1|LFKQ01000011.1	GCA_001051905.1_LFKQ01000011.1	GCA_001051905.1|LFKQ01000011.1	GCA_001051905_1_8	GCA_001051905_1_8@C21	1	603	GCA_001051905_1_8_283	GCA_001051905_1_8_283	-	332788	.	.	hypothetical protein	MPRFNSNVTSKKRKKNVHIEIVNKDFLPTRNEFKIDRVEKQLKDSPDSEIVFFNDSIIFSKQNTNLKFTNFISNEKQQYQINAISHFSSDISMIKSIEANTVNYNERMLSIISLYLKEDVQKIMGLMKSDIKSLLDLQEGLRVYWYYDLEDKEIKIVCIDPQHLVLPSKHNGMSKEEMMIKTFNAVTNSKKHCISQYFIN*	.	hypothetical_protein	C21	14062	276640	290702	GCA_001051905.1|LFKQ01000011.1@region_276641_290702@tool_cenote_CDS_0001	cloud	direct	high	602	0.998	GCA_001051905.1_00624
GCA_001051905.1|LFKQ01000011.1@region_276641_290702@tool_cenote	cenote	CDS	277235	277744	GCA_001051905.1	LFKQ01000011.1	GCA_001051905.1|LFKQ01000011.1	GCA_001051905.1_LFKQ01000011.1	GCA_001051905.1|LFKQ01000011.1	GCA_001051905_1_8	GCA_001051905_1_8@C21	596	1105	GCA_001051905_1_8_284	GCA_001051905_1_8_284	-	332788	.	COG3600	Uncharacterized phage-associated protein  [Mobilome: prophages, transposons]. 	MTEKKHLTTVENIIALMKEEIENISPLRLQKTLYFLFAYYGASYGQLSKSKEYKVTQNESLNLPEYLFDAQFEAWQYGPVIRDVYVSNKYSLDYNDIDFSMSNFEIEDKTMQQEITEYLREIIKSTLKISDFGLVERSHEDKEWKNNITHQEVMNNDLIIKEYIGLVNA*	mmseqs_cdd	nonviral_gene	C21	14062	276640	290702	GCA_001051905.1|LFKQ01000011.1@region_276641_290702@tool_cenote_CDS_0002	cloud	direct	high	509	0.998	GCA_001051905.1_00625
GCA_001051905.1|LFKQ01000011.1@region_276641_290702@tool_cenote	cenote	CDS	279137	279400	GCA_001051905.1	LFKQ01000011.1	GCA_001051905.1|LFKQ01000011.1	GCA_001051905.1_LFKQ01000011.1	GCA_001051905.1|LFKQ01000011.1	GCA_001051905_1_8	GCA_001051905_1_8@C21	2498	2761	GCA_001051905_1_8_285	GCA_001051905_1_8_285	-	332788	.	.	hypothetical protein	MAKALMLIITIVCIAYIVYNFIKDKPVINIFFALIIQSTLLFLIRFFWIKQSFSKSLLSSFDLFSITFVVIYLIYKLRKRRKEKEDK*	.	hypothetical_protein	C21	14062	276640	290702	GCA_001051905.1|LFKQ01000011.1@region_276641_290702@tool_cenote_CDS_0003	shell	direct	high	263	0.996	GCA_001051905.1_00626
GCA_001051905.1|LFKQ01000011.1@region_276641_290702@tool_cenote	cenote	CDS	279577	279753	GCA_001051905.1	LFKQ01000011.1	GCA_001051905.1|LFKQ01000011.1	GCA_001051905.1_LFKQ01000011.1	GCA_001051905.1|LFKQ01000011.1	GCA_001051905_1_8	GCA_001051905_1_8@C21	2938	3114	GCA_001051905_1_8_286	GCA_001051905_1_8_286	+	332788	.	.	hypothetical protein	MKYRLIAVVIFAIIVLIATFYIQPMLNTDNQLINLVYVVFLFVVGAILGYIGRRLDSK*	.	hypothetical_protein	C21	14062	276640	290702	GCA_001051905.1|LFKQ01000011.1@region_276641_290702@tool_cenote_CDS_0004	shell	direct	high	176	0.994	GCA_001051905.1_00627
GCA_001051905.1|LFKQ01000011.1@region_276641_290702@tool_cenote	cenote	CDS	280548	280778	GCA_001051905.1	LFKQ01000011.1	GCA_001051905.1|LFKQ01000011.1	GCA_001051905.1_LFKQ01000011.1	GCA_001051905.1|LFKQ01000011.1	GCA_001051905_1_8	GCA_001051905_1_8@C21	3909	4139	GCA_001051905_1_8_287	GCA_001051905_1_8_287	-	332788	.	.	hypothetical protein	MKTITKILDALTYICVGLLFLKYAVMSANMMFDWHLRWYFLEDIPHMALILFIMMFVFAVPSEMIKDKLKKEKKQV*	.	hypothetical_protein	C21	14062	276640	290702	GCA_001051905.1|LFKQ01000011.1@region_276641_290702@tool_cenote_CDS_0005	shell	direct	high	230	0.996	GCA_001051905.1_00628
GCA_001051905.1|LFKQ01000011.1@region_276641_290702@tool_cenote	cenote	CDS	281698	282126	GCA_001051905.1	LFKQ01000011.1	GCA_001051905.1|LFKQ01000011.1	GCA_001051905.1_LFKQ01000011.1	GCA_001051905.1|LFKQ01000011.1	GCA_001051905_1_8	GCA_001051905_1_8@C21	5059	5487	GCA_001051905_1_8_288	GCA_001051905_1_8_288	-	332788	.	PFAM:PF03592.15	Terminase-small-subunit	MKSLTLKQKQFADEYIRTGNAYQSAVNAGYSVSYARGNAIKLLENVSINQYIDDNLEIIQKESIAEADEIMRYLTRVLRAEEKEEILVYVGEGMQEIQTIQPSAKDRIKAAELLGKRYRMWTDKHEIEVTAPIFIDDVPEED*	hallmark_hmm	common_virus	C21	14062	276640	290702	GCA_001051905.1|LFKQ01000011.1@region_276641_290702@tool_cenote_CDS_0006	shell	direct	high	428	0.998	GCA_001051905.1_00629
GCA_001051905.1|LFKQ01000011.1@region_276641_290702@tool_cenote	cenote	CDS	282152	282391	GCA_001051905.1	LFKQ01000011.1	GCA_001051905.1|LFKQ01000011.1	GCA_001051905.1_LFKQ01000011.1	GCA_001051905.1|LFKQ01000011.1	GCA_001051905_1_8	GCA_001051905_1_8@C21	5513	5752	GCA_001051905_1_8_289	GCA_001051905_1_8_289	-	332788	.	PFAM:PF03592.15	Terminase-small-subunit	MKKLTTKQRRFAEEYIETGNPYYSAIKVGYSEVYARDNALKLLENISVKSYIHERLEEIKNDNMTEKYGVMRYLTRLIK*	hallmark_hmm	common_virus	C21	14062	276640	290702	GCA_001051905.1|LFKQ01000011.1@region_276641_290702@tool_cenote_CDS_0007	shell	direct	high	239	0.996	GCA_001051905.1_00630
GCA_001051905.1|LFKQ01000011.1@region_276641_290702@tool_cenote	cenote	CDS	282446	282967	GCA_001051905.1	LFKQ01000011.1	GCA_001051905.1|LFKQ01000011.1	GCA_001051905.1_LFKQ01000011.1	GCA_001051905.1|LFKQ01000011.1	GCA_001051905_1_8	GCA_001051905_1_8@C21	5807	6328	GCA_001051905_1_8_290	GCA_001051905_1_8_290	-	332788	.	.	hypothetical protein	MKTLKQIEVHKKNIESYQKDIQALEQEVNNEKEKIDQLNKDYQELVVSDQVEKADKLYTKIDKQETTHKAKVKRLSXMXXXXXQXXIKNXXXMXXXXXXLXXXYIDIYYDDLKHYNKLKEELKQAEQKLEEYNNSYLLKQRNLSHYIDRLIRENNIQPTEYMGTVNSHKPFYI*	.	hypothetical_protein	C21	14062	276640	290702	GCA_001051905.1|LFKQ01000011.1@region_276641_290702@tool_cenote_CDS_0008	shell	direct	high	521	0.998	GCA_001051905.1_00631
GCA_001051905.1|LFKQ01000011.1@region_276641_290702@tool_cenote	cenote	CDS	282979	283212	GCA_001051905.1	LFKQ01000011.1	GCA_001051905.1|LFKQ01000011.1	GCA_001051905.1_LFKQ01000011.1	GCA_001051905.1|LFKQ01000011.1	GCA_001051905_1_8	GCA_001051905_1_8@C21	6340	6573	GCA_001051905_1_8_291	GCA_001051905_1_8_291	-	332788	.	.	hypothetical protein	MNNDEMNKLSEALELSESQRLALYSYSERQAKEKAQSQEQKKELSSLEKHEKRQQIMSIKDTNQRQEEIAKHVELFK*	.	hypothetical_protein	C21	14062	276640	290702	GCA_001051905.1|LFKQ01000011.1@region_276641_290702@tool_cenote_CDS_0009	shell	direct	high	233	0.996	GCA_001051905.1_00632
GCA_001051905.1|LFKQ01000011.1@region_276641_290702@tool_cenote	cenote	CDS	283202	284044	GCA_001051905.1	LFKQ01000011.1	GCA_001051905.1|LFKQ01000011.1	GCA_001051905.1_LFKQ01000011.1	GCA_001051905.1|LFKQ01000011.1	GCA_001051905_1_8	GCA_001051905_1_8@C21	6563	7405	GCA_001051905_1_8_292	GCA_001051905_1_8_292	-	332788	.	PFAM:PF05263.10	spore-coat-protein	MASLKQAYQPETDTEDIEMVSDYTLFTLYNPKFIEKKAENIREGIETLYERNKPHMASDNITGILYYESVNIEHLAIQIIEEKEKLESYLKKSNRNLYHLYVVLDTYTDEERTLLMNYIKHAKVRDNELVRRFKIDLYNYVQAEREKRQEEHNKKSFNAYLVDKDEVRKRQQKKKINNGYGLTLNQEKELRLIKEHEAERNTDMGIFIDLIQQMNNDELLSYVLDRHEFNIDSYNLKILTDAALYRLPLKQRKQAYNHLKAIARTLINNPIEKRLKRYEQ*	phrogs_hmm	hypothetical_protein	C21	14062	276640	290702	GCA_001051905.1|LFKQ01000011.1@region_276641_290702@tool_cenote_CDS_0010	shell	direct	high	842	0.999	GCA_001051905.1_00633
GCA_001051905.1|LFKQ01000011.1@region_276641_290702@tool_cenote	cenote	CDS	284098	284895	GCA_001051905.1	LFKQ01000011.1	GCA_001051905.1|LFKQ01000011.1	GCA_001051905.1_LFKQ01000011.1	GCA_001051905.1|LFKQ01000011.1	GCA_001051905_1_8	GCA_001051905_1_8@C21	7459	8256	GCA_001051905_1_8_293	GCA_001051905_1_8_293	-	332788	.	PDB:4M4W_K	Replicative-helicase	MKSINDIDLKSKMRSELIEEQYNLKCDKCKNIYSYHKFRKSDGTIQIIRNGCECESIEKGKQSRSQHKANQKRLNIEKVFKQSMMNDDLLKAEFDNYKPTNKNLLETKQILQKYVANFKPDKPKSLLLQGSYGIGKSHLAMSVVREVKKKGYTALFLDVTELVKAYRNTYNKNVAMTEKELDQMIRDVDLLVIDDYGTTVNDYGNEKLFSLTDMRTGKSNIITTNREALELSNNDDKAKRFSRLMKNTQIIKMHGTDYRLKDFKA*	rep_hall_hmm	common_virus	C21	14062	276640	290702	GCA_001051905.1|LFKQ01000011.1@region_276641_290702@tool_cenote_CDS_0011	shell	direct	high	797	0.999	GCA_001051905.1_00634
GCA_001051905.1|LFKQ01000011.1@region_276641_290702@tool_cenote	cenote	CDS	284908	285666	GCA_001051905.1	LFKQ01000011.1	GCA_001051905.1|LFKQ01000011.1	GCA_001051905.1_LFKQ01000011.1	GCA_001051905.1|LFKQ01000011.1	GCA_001051905_1_8	GCA_001051905_1_8@C21	8269	9027	GCA_001051905_1_8_294	GCA_001051905_1_8_294	-	332788	.	PFAM:PF06926.10	replisome-organiser-protein	MEQPSYYAILTASVRYDNRLTDSEKILYAEITALSNKYGYCSASNNYFDKLYEVSKRTISTRINNLKKLNYLKIELELNGKEVKKRKMYPMTHTSIPIEDNFHRGVENMVHTPIEANFQENITSNNITRLNNTSSSSASTTKQQPPSHSYSNVFNFYQENGFGILQPFVIDQINAWIDDFNGNENIVIEALKEAATNNVCKWSYANSILKSWYQDGIKSIDDIEARRKQRETSKNKTESTKTFDNSQYADLF*	rep_hall_hmm	common_virus	C21	14062	276640	290702	GCA_001051905.1|LFKQ01000011.1@region_276641_290702@tool_cenote_CDS_0012	cloud	direct	high	758	0.999	GCA_001051905.1_00635
GCA_001051905.1|LFKQ01000011.1@region_276641_290702@tool_cenote	cenote	CDS	285702	285926	GCA_001051905.1	LFKQ01000011.1	GCA_001051905.1|LFKQ01000011.1	GCA_001051905.1_LFKQ01000011.1	GCA_001051905.1|LFKQ01000011.1	GCA_001051905_1_8	GCA_001051905_1_8@C21	9063	9287	GCA_001051905_1_8_295	GCA_001051905_1_8_295	-	332788	.	PFAM:PF04492.12	DnaD-like-helicase-loader	MTNKIKCSKGYGVITQSVMSSKDISIEAKALYCYYMAHVGDNFIPSATQTCNDLMISYKRFKTLRTQLFERGFL*	phrogs_hmm	hypothetical_protein	C21	14062	276640	290702	GCA_001051905.1|LFKQ01000011.1@region_276641_290702@tool_cenote_CDS_0013	shell	direct	high	224	0.996	GCA_001051905.1_00636
GCA_001051905.1|LFKQ01000011.1@region_276641_290702@tool_cenote	cenote	CDS	285980	286231	GCA_001051905.1	LFKQ01000011.1	GCA_001051905.1|LFKQ01000011.1	GCA_001051905.1_LFKQ01000011.1	GCA_001051905.1|LFKQ01000011.1	GCA_001051905_1_8	GCA_001051905_1_8@C21	9341	9592	GCA_001051905_1_8_296	GCA_001051905_1_8_296	-	332788	.	.	hypothetical protein	MKLFKKKYDHKKVNKVKDMILYTSYSFEAKAYEEAIELLKDNNKQKAIELMYERLIEAQRKEYEMKLEIEKASSVHASQRRNR*	.	hypothetical_protein	C21	14062	276640	290702	GCA_001051905.1|LFKQ01000011.1@region_276641_290702@tool_cenote_CDS_0014	shell	direct	high	251	0.996	GCA_001051905.1_00637
GCA_001051905.1|LFKQ01000011.1@region_276641_290702@tool_cenote	cenote	CDS	286566	286835	GCA_001051905.1	LFKQ01000011.1	GCA_001051905.1|LFKQ01000011.1	GCA_001051905.1_LFKQ01000011.1	GCA_001051905.1|LFKQ01000011.1	GCA_001051905_1_8	GCA_001051905_1_8@C21	9927	10196	GCA_001051905_1_8_297	GCA_001051905_1_8_297	-	332788	.	PFAM:PF10013.8	excisionase-and-transcriptional-regulator	MAEQQPILSESASLELANGILKLAEQIAQRKIEQQQKRWATQTELRKLYRCTHSDITEWERLGLTKRKQGRSYYYDLKEVEEFLLSQKK*	phrogs_hmm	hypothetical_protein	C21	14062	276640	290702	GCA_001051905.1|LFKQ01000011.1@region_276641_290702@tool_cenote_CDS_0015	shell	direct	high	269	0.996	GCA_001051905.1_00639
GCA_001051905.1|LFKQ01000011.1@region_276641_290702@tool_cenote	cenote	CDS	286869	287069	GCA_001051905.1	LFKQ01000011.1	GCA_001051905.1|LFKQ01000011.1	GCA_001051905.1_LFKQ01000011.1	GCA_001051905.1|LFKQ01000011.1	GCA_001051905_1_8	GCA_001051905_1_8@C21	10230	10430	GCA_001051905_1_8_298	GCA_001051905_1_8_298	-	332788	.	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain  [Transcription]. 	MENKVKGYRCSLGLTQKKMADILGMSTNSYASKENGKSDFKVKEINKFINFMKKNNIIVDKEIFLQ*	mmseqs_cdd	nonviral_gene	C21	14062	276640	290702	GCA_001051905.1|LFKQ01000011.1@region_276641_290702@tool_cenote_CDS_0016	cloud	direct	high	200	0.995	GCA_001051905.1_00640
GCA_001051905.1|LFKQ01000011.1@region_276641_290702@tool_cenote	cenote	CDS	287194	287799	GCA_001051905.1	LFKQ01000011.1	GCA_001051905.1|LFKQ01000011.1	GCA_001051905.1_LFKQ01000011.1	GCA_001051905.1|LFKQ01000011.1	GCA_001051905_1_8	GCA_001051905_1_8@C21	10555	11160	GCA_001051905_1_8_299	GCA_001051905_1_8_299	+	332788	.	PFAM:PF13744.5	transcriptional-repressor	MKSAKEVGQTIKLIRIGKKLSQKDFSKKIETTVSALSNWENGRNYPKDDYLINISNIFNVPLDIFKYSTKERVTEIVNSLEKRVNENDNYKILYSPKVKNEIIEKATLITDKQQENYNGLLNFSTKQDILNTLNDLIIDENITIGYNFENDNEVFNFIDTELRNFTSKNIKLLISKNANHDLVAKIENELYNAIDNIDKLR*	phrogs_hmm	hypothetical_protein	C21	14062	276640	290702	GCA_001051905.1|LFKQ01000011.1@region_276641_290702@tool_cenote_CDS_0017	cloud	direct	high	605	0.998	GCA_001051905.1_00641
GCA_001051905.1|LFKQ01000011.1@region_276641_290702@tool_cenote	cenote	CDS	287900	288133	GCA_001051905.1	LFKQ01000011.1	GCA_001051905.1|LFKQ01000011.1	GCA_001051905.1_LFKQ01000011.1	GCA_001051905.1|LFKQ01000011.1	GCA_001051905_1_8	GCA_001051905_1_8@C21	11261	11494	GCA_001051905_1_8_300	GCA_001051905_1_8_300	+	332788	.	.	hypothetical protein	MYFNDWKVTINGKGSHDVVTNEDTLLILQDYQHVEIALKLVNDTIQVKSLGYGEDVSINPTTKEITVNVTNLLEDDE*	.	hypothetical_protein	C21	14062	276640	290702	GCA_001051905.1|LFKQ01000011.1@region_276641_290702@tool_cenote_CDS_0018	shell	direct	high	233	0.996	GCA_001051905.1_00642
GCA_001051905.1|LFKQ01000011.1@region_276641_290702@tool_cenote	cenote	CDS	288155	288628	GCA_001051905.1	LFKQ01000011.1	GCA_001051905.1|LFKQ01000011.1	GCA_001051905.1_LFKQ01000011.1	GCA_001051905.1|LFKQ01000011.1	GCA_001051905_1_8	GCA_001051905_1_8@C21	11516	11989	GCA_001051905_1_8_301	GCA_001051905_1_8_301	+	332788	.	.	hypothetical protein	MELKLTDKEANDLLFLSKEILERYNIKLEENCKGEINITSPKVPTKFILNYFIRPGKATLNFRETQYNTCLLRINLNDGFHKNSNNDIVRGNRINIFSEKEYKNKNDLSTHMVAYPLPYKIFEDSSDFVKQLFSVLRYTNTNHNDKIYIETKFQLGW*	.	hypothetical_protein	C21	14062	276640	290702	GCA_001051905.1|LFKQ01000011.1@region_276641_290702@tool_cenote_CDS_0019	cloud	direct	high	473	0.998	GCA_001051905.1_00643
GCA_001051905.1|LFKQ01000011.1@region_276641_290702@tool_cenote	cenote	CDS	288633	289424	GCA_001051905.1	LFKQ01000011.1	GCA_001051905.1|LFKQ01000011.1	GCA_001051905.1_LFKQ01000011.1	GCA_001051905.1|LFKQ01000011.1	GCA_001051905_1_8	GCA_001051905_1_8@C21	11994	12785	GCA_001051905_1_8_302	GCA_001051905_1_8_302	+	332788	.	PF08862.10	Domain of unknown function DUF1829	MNDNEIKSISEDYFNYLKKESKFVPLENESIEFYSPIVDYFGDSISVNISNNIDNYLLTDYGETLWNLEQLGIDLTSHKKQKKYQFLKNIIESNNLVLENKKIQQYIDRKKLPQAIHDYVLAISEISNLAILKKDNIKSLFRDEVIQYFLKNRETYPNVFIEFKVEGKSKLTHNFEAVFPGKTTEYVKTIKQINKNSAKNLLFDWEDVEEYRSKMYDSNARLNIITENEDEISDSVATMLSRYNVEVLPFDDKRKIKRKFSNL*	hhsuite_tools	nonviral_gene	C21	14062	276640	290702	GCA_001051905.1|LFKQ01000011.1@region_276641_290702@tool_cenote_CDS_0020	cloud	direct	high	791	0.999	GCA_001051905.1_00644
GCA_001051905.1|LFKQ01000011.1@region_276641_290702@tool_cenote	cenote	CDS	289565	290701	GCA_001051905.1	LFKQ01000011.1	GCA_001051905.1|LFKQ01000011.1	GCA_001051905.1_LFKQ01000011.1	GCA_001051905.1|LFKQ01000011.1	GCA_001051905_1_8	GCA_001051905_1_8@C21	12926	14062	GCA_001051905_1_8_303	GCA_001051905_1_8_303	+	332788	.	PDB:1Z19_B	Integrase	MIKKYKKKDGSTAYMFVAYLGVDPITRKQKRTTRRGFKTEREAKIAEAKLQTEIQSKGFLNTDITTFKQVYELWIEQYKCTVRESTFVRVSNMFKIKILKEFDNMPIQSITTPYCQKVINYWIENYKDFRNIKVYAANVFEYAVMLKIIHENPFKYTKLPKRTRNKSNEHLTYYSSDELKQFLELIKDDLMYYAMFRLLGFTGMRRGELMALTWEDINFKNKTISIDKTVTIGLNSKEIIQPPKTHSSIRVISIDDRTLSILKNWRVEQRKLCLMHGHNTSNKSQCLFTNLRTNKRLQVQHPNKAMDKICKKYNFKKIKIHGFRHTHCSLLFEAGLSIQEVQDRLGHGDINTTMDVYAHITEKQREKVAEKFANYISF*	common_virus_hmm	common_virus	C21	14062	276640	290702	GCA_001051905.1|LFKQ01000011.1@region_276641_290702@tool_cenote_CDS_0021	shell	direct	high	1136	0.999	GCA_001051905.1_00645