core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_001051915.1|LFKR01000007.1@region_707443_721504@tool_cenote	cenote	CDS	707442	708044	GCA_001051915.1	LFKR01000007.1	GCA_001051915.1|LFKR01000007.1	GCA_001051915.1_LFKR01000007.1	GCA_001051915.1|LFKR01000007.1	GCA_001051915_1_11	GCA_001051915_1_11@C55	1	603	GCA_001051915_1_11_685	GCA_001051915_1_11_685	-	764482	.	.	hypothetical protein	MPRFNSNVTSKKRKKNVHIEIVNKDFLPTRNEFKIDRVEKQLKDSPDSEIVFFNDSIIFSKQNTNLKFTNFISNEKQQYQINAISHFSSDISMIKSIEANTVNYNERMLSIISLYLKEDVQKIMGLMKSDIKSLLDLQEGLRVYWYYDLEDKEIKIVCIDPQHLVLPSKHNGMSKEEMMIKTFNAVTNSKKHCISQYFIN*	.	hypothetical_protein	C55	14062	707442	721504	GCA_001051915.1|LFKR01000007.1@region_707443_721504@tool_cenote_CDS_0001	cloud	direct	high	602	0.998	GCA_001051915.1_01775
GCA_001051915.1|LFKR01000007.1@region_707443_721504@tool_cenote	cenote	CDS	708037	708546	GCA_001051915.1	LFKR01000007.1	GCA_001051915.1|LFKR01000007.1	GCA_001051915.1_LFKR01000007.1	GCA_001051915.1|LFKR01000007.1	GCA_001051915_1_11	GCA_001051915_1_11@C55	596	1105	GCA_001051915_1_11_686	GCA_001051915_1_11_686	-	764482	.	COG3600	Uncharacterized phage-associated protein  [Mobilome: prophages, transposons]. 	MTEKKHLTTVENIIALMKEEIENISPLRLQKTLYFLFAYYGASYGQLSKSKEYKVTQNESLNLPEYLFDAQFEAWQYGPVIRDVYVSNKYSLDYNDIDFSMSNFEIEDKTMQQEITEYLREIIKSTLKISDFGLVERSHEDKEWKNNITHQEVMNNDLIIKEYIGLVNA*	mmseqs_cdd	nonviral_gene	C55	14062	707442	721504	GCA_001051915.1|LFKR01000007.1@region_707443_721504@tool_cenote_CDS_0002	cloud	direct	high	509	0.998	GCA_001051915.1_01776
GCA_001051915.1|LFKR01000007.1@region_707443_721504@tool_cenote	cenote	CDS	709939	710202	GCA_001051915.1	LFKR01000007.1	GCA_001051915.1|LFKR01000007.1	GCA_001051915.1_LFKR01000007.1	GCA_001051915.1|LFKR01000007.1	GCA_001051915_1_11	GCA_001051915_1_11@C55	2498	2761	GCA_001051915_1_11_687	GCA_001051915_1_11_687	-	764482	.	.	hypothetical protein	MAKALMLIITIVCIAYIVYNFIKDKPVINIFFALIIQSTLLFLIRFFWIKQSFSKSLLSSFDLFSITFVVIYLIYKLRKRRKEKEDK*	.	hypothetical_protein	C55	14062	707442	721504	GCA_001051915.1|LFKR01000007.1@region_707443_721504@tool_cenote_CDS_0003	shell	direct	high	263	0.996	GCA_001051915.1_01777
GCA_001051915.1|LFKR01000007.1@region_707443_721504@tool_cenote	cenote	CDS	710379	710555	GCA_001051915.1	LFKR01000007.1	GCA_001051915.1|LFKR01000007.1	GCA_001051915.1_LFKR01000007.1	GCA_001051915.1|LFKR01000007.1	GCA_001051915_1_11	GCA_001051915_1_11@C55	2938	3114	GCA_001051915_1_11_688	GCA_001051915_1_11_688	+	764482	.	.	hypothetical protein	MKYRLIAVVIFAIIVLIATFYIQPMLNTDNQLINLVYVVFLFVVGAILGYIGRRLDSK*	.	hypothetical_protein	C55	14062	707442	721504	GCA_001051915.1|LFKR01000007.1@region_707443_721504@tool_cenote_CDS_0004	shell	direct	high	176	0.994	GCA_001051915.1_01778
GCA_001051915.1|LFKR01000007.1@region_707443_721504@tool_cenote	cenote	CDS	711350	711580	GCA_001051915.1	LFKR01000007.1	GCA_001051915.1|LFKR01000007.1	GCA_001051915.1_LFKR01000007.1	GCA_001051915.1|LFKR01000007.1	GCA_001051915_1_11	GCA_001051915_1_11@C55	3909	4139	GCA_001051915_1_11_689	GCA_001051915_1_11_689	-	764482	.	.	hypothetical protein	MKTITKILDALTYICVGLLFLKYAVMSANMMFDWHLRWYFLEDIPHMALILFIMMFVFAVPSEMIKDKLKKEKKQV*	.	hypothetical_protein	C55	14062	707442	721504	GCA_001051915.1|LFKR01000007.1@region_707443_721504@tool_cenote_CDS_0005	shell	direct	high	230	0.996	GCA_001051915.1_01779
GCA_001051915.1|LFKR01000007.1@region_707443_721504@tool_cenote	cenote	CDS	712500	712928	GCA_001051915.1	LFKR01000007.1	GCA_001051915.1|LFKR01000007.1	GCA_001051915.1_LFKR01000007.1	GCA_001051915.1|LFKR01000007.1	GCA_001051915_1_11	GCA_001051915_1_11@C55	5059	5487	GCA_001051915_1_11_690	GCA_001051915_1_11_690	-	764482	.	PFAM:PF03592.15	Terminase-small-subunit	MKSLTLKQKQFADEYIRTGNAYQSAVNAGYSVSYARGNAIKLLENVSINQYIDDNLEIIQKESIAEADEIMRYLTRVLRAEEKEEILVYVGEGMQEIQTIQPSAKDRIKAAELLGKRYRMWTDKHEIEVTAPIFIDDVPEED*	hallmark_hmm	common_virus	C55	14062	707442	721504	GCA_001051915.1|LFKR01000007.1@region_707443_721504@tool_cenote_CDS_0006	shell	direct	high	428	0.998	GCA_001051915.1_01780
GCA_001051915.1|LFKR01000007.1@region_707443_721504@tool_cenote	cenote	CDS	712954	713193	GCA_001051915.1	LFKR01000007.1	GCA_001051915.1|LFKR01000007.1	GCA_001051915.1_LFKR01000007.1	GCA_001051915.1|LFKR01000007.1	GCA_001051915_1_11	GCA_001051915_1_11@C55	5513	5752	GCA_001051915_1_11_691	GCA_001051915_1_11_691	-	764482	.	PFAM:PF03592.15	Terminase-small-subunit	MKKLTTKQRRFAEEYIETGNPYYSAIKVGYSEVYARDNALKLLENISVKSYIHERLEEIKNDNMTEKYGVMRYLTRLIK*	hallmark_hmm	common_virus	C55	14062	707442	721504	GCA_001051915.1|LFKR01000007.1@region_707443_721504@tool_cenote_CDS_0007	shell	direct	high	239	0.996	GCA_001051915.1_01781
GCA_001051915.1|LFKR01000007.1@region_707443_721504@tool_cenote	cenote	CDS	713248	713769	GCA_001051915.1	LFKR01000007.1	GCA_001051915.1|LFKR01000007.1	GCA_001051915.1_LFKR01000007.1	GCA_001051915.1|LFKR01000007.1	GCA_001051915_1_11	GCA_001051915_1_11@C55	5807	6328	GCA_001051915_1_11_692	GCA_001051915_1_11_692	-	764482	.	PFAM:PF09979.8	head-maturation-protease	MKTLKQIEVHKKNIESYQKDIQALEQEVNNEKEKIDQLNKDYQELVVSDQVEKADKLYTKIDKQETTHKAKVKRLSVMKQSLKQVIIKNCSSMQEEADKLSDEYIDIYYDDLKHYNKLKEELKQAEQKLEEYNNSYLLKQRNLSHYIDRLIRENNIQPTEYMGTVNSHKPFYI*	phrogs_hmm	hypothetical_protein	C55	14062	707442	721504	GCA_001051915.1|LFKR01000007.1@region_707443_721504@tool_cenote_CDS_0008	shell	direct	high	521	0.998	GCA_001051915.1_01782
GCA_001051915.1|LFKR01000007.1@region_707443_721504@tool_cenote	cenote	CDS	713781	714014	GCA_001051915.1	LFKR01000007.1	GCA_001051915.1|LFKR01000007.1	GCA_001051915.1_LFKR01000007.1	GCA_001051915.1|LFKR01000007.1	GCA_001051915_1_11	GCA_001051915_1_11@C55	6340	6573	GCA_001051915_1_11_693	GCA_001051915_1_11_693	-	764482	.	.	hypothetical protein	MNNDEMNKLSEALELSESQRLALYSYSERQAKEKAQSQEQKKELSSLEKHEKRQQIMSIKDTNQRQEEIAKHVELFK*	.	hypothetical_protein	C55	14062	707442	721504	GCA_001051915.1|LFKR01000007.1@region_707443_721504@tool_cenote_CDS_0009	shell	direct	high	233	0.996	GCA_001051915.1_01783
GCA_001051915.1|LFKR01000007.1@region_707443_721504@tool_cenote	cenote	CDS	714004	714846	GCA_001051915.1	LFKR01000007.1	GCA_001051915.1|LFKR01000007.1	GCA_001051915.1_LFKR01000007.1	GCA_001051915.1|LFKR01000007.1	GCA_001051915_1_11	GCA_001051915_1_11@C55	6563	7405	GCA_001051915_1_11_694	GCA_001051915_1_11_694	-	764482	.	PFAM:PF05263.10	spore-coat-protein	MASLKQAYQPETDTEDIEMVSDYTLFTLYNPKFIEKKAENIREGIETLYERNKPHMASDNITGILYYESVNIEHLAIQIIEEKEKLESYLKKSNRNLYHLYVVLDTYTDEERTLLMNYIKHAKVRDNELVRRFKIDLYNYVQAEREKRQEEHNKKSFNAYLVDKDEVRKRQQKKKINNGYGLTLNQEKELRLIKEHEAERNTDMGIFIDLIQQMNNDELLSYVLDRHEFNIDSYNLKILTDAAXYRLPLKQRKQAYNHLKAIARTLINNPIEKRLKRYEQ*	phrogs_hmm	hypothetical_protein	C55	14062	707442	721504	GCA_001051915.1|LFKR01000007.1@region_707443_721504@tool_cenote_CDS_0010	shell	direct	high	842	0.999	GCA_001051915.1_01784
GCA_001051915.1|LFKR01000007.1@region_707443_721504@tool_cenote	cenote	CDS	714900	715697	GCA_001051915.1	LFKR01000007.1	GCA_001051915.1|LFKR01000007.1	GCA_001051915.1_LFKR01000007.1	GCA_001051915.1|LFKR01000007.1	GCA_001051915_1_11	GCA_001051915_1_11@C55	7459	8256	GCA_001051915_1_11_695	GCA_001051915_1_11_695	-	764482	.	PDB:4M4W_K	Replicative-helicase	MKSINDIDLKSKMRSELIEEQYNLKCDKCKNIYSYHKFRKSDGTIQIIRNGCECESIEKGKQSRSQHKANQKRLNIEKVFKQSMMNDDLLKAEFDNYKPTNKNLLETKQILQKYVANFKPDKPKSLLLQGSYGIGKSHLAMSVVREVKKKGYTALFLDVTELVKAYRNTYNKNVAMTEKELDQMIRDVDLLVIDDYGTTVNDYGNEKLFSLTDMRTGKSNIITTNREALELSNNDDKAKRFSRLMKNTQIIKMHGTDYRLKDFKA*	rep_hall_hmm	common_virus	C55	14062	707442	721504	GCA_001051915.1|LFKR01000007.1@region_707443_721504@tool_cenote_CDS_0011	shell	direct	high	797	0.999	GCA_001051915.1_01785
GCA_001051915.1|LFKR01000007.1@region_707443_721504@tool_cenote	cenote	CDS	715710	716468	GCA_001051915.1	LFKR01000007.1	GCA_001051915.1|LFKR01000007.1	GCA_001051915.1_LFKR01000007.1	GCA_001051915.1|LFKR01000007.1	GCA_001051915_1_11	GCA_001051915_1_11@C55	8269	9027	GCA_001051915_1_11_696	GCA_001051915_1_11_696	-	764482	.	PFAM:PF06926.10	replisome-organiser-protein	MEQPSYYAILTASVRYDNRLTDSEKILYAEITALSNKYGYCSASNNYFDKLYEVSKRTISTRINNLKKLNYLKIELELNGKEVKKRKMYPMTHTSIPIEDNFHRGVENMVHTPIEANFQENITSNNITRLNNTSSSSASTTKQQPPSHSYSNVFNFYQENGFGILQPFVIDQINAWIDDFNGNENIVIEALKEAAXXNVCXWSXANSILKSWYQDGIXXIDXIEARRKQREXSKNKTESTKTFDNSQXXDLF*	rep_hall_hmm	common_virus	C55	14062	707442	721504	GCA_001051915.1|LFKR01000007.1@region_707443_721504@tool_cenote_CDS_0012	cloud	direct	high	758	0.999	GCA_001051915.1_01786
GCA_001051915.1|LFKR01000007.1@region_707443_721504@tool_cenote	cenote	CDS	716504	716728	GCA_001051915.1	LFKR01000007.1	GCA_001051915.1|LFKR01000007.1	GCA_001051915.1_LFKR01000007.1	GCA_001051915.1|LFKR01000007.1	GCA_001051915_1_11	GCA_001051915_1_11@C55	9063	9287	GCA_001051915_1_11_697	GCA_001051915_1_11_697	-	764482	.	PFAM:PF04492.12	DnaD-like-helicase-loader	MTNKIKCSKGYGVITQSVMSSKDISIEAKALYCYYMAHVGDNFIPSATQTCNDLMISYKRFKTLRTQLFERGFL*	phrogs_hmm	hypothetical_protein	C55	14062	707442	721504	GCA_001051915.1|LFKR01000007.1@region_707443_721504@tool_cenote_CDS_0013	shell	direct	high	224	0.996	GCA_001051915.1_01787
GCA_001051915.1|LFKR01000007.1@region_707443_721504@tool_cenote	cenote	CDS	716782	717033	GCA_001051915.1	LFKR01000007.1	GCA_001051915.1|LFKR01000007.1	GCA_001051915.1_LFKR01000007.1	GCA_001051915.1|LFKR01000007.1	GCA_001051915_1_11	GCA_001051915_1_11@C55	9341	9592	GCA_001051915_1_11_698	GCA_001051915_1_11_698	-	764482	.	.	hypothetical protein	MKLFKKKYDHKKVNKVKDMILYTSYSFEAKAYEEAIELLKDNNKQKAIELMYERLIEAQRKEYEMKLEIEKASSVHASQRRNR*	.	hypothetical_protein	C55	14062	707442	721504	GCA_001051915.1|LFKR01000007.1@region_707443_721504@tool_cenote_CDS_0014	shell	direct	high	251	0.996	GCA_001051915.1_01788
GCA_001051915.1|LFKR01000007.1@region_707443_721504@tool_cenote	cenote	CDS	717368	717637	GCA_001051915.1	LFKR01000007.1	GCA_001051915.1|LFKR01000007.1	GCA_001051915.1_LFKR01000007.1	GCA_001051915.1|LFKR01000007.1	GCA_001051915_1_11	GCA_001051915_1_11@C55	9927	10196	GCA_001051915_1_11_699	GCA_001051915_1_11_699	-	764482	.	PFAM:PF10013.8	excisionase-and-transcriptional-regulator	MAEQQPILSESASLELANGILKLAEQIAQRKIEQQQKRWATQTELRKLYRCTHSDITEWERLGLTKRKQGRSYYYDLKEVEEFLLSQKK*	phrogs_hmm	hypothetical_protein	C55	14062	707442	721504	GCA_001051915.1|LFKR01000007.1@region_707443_721504@tool_cenote_CDS_0015	shell	direct	high	269	0.996	GCA_001051915.1_01790
GCA_001051915.1|LFKR01000007.1@region_707443_721504@tool_cenote	cenote	CDS	717671	717871	GCA_001051915.1	LFKR01000007.1	GCA_001051915.1|LFKR01000007.1	GCA_001051915.1_LFKR01000007.1	GCA_001051915.1|LFKR01000007.1	GCA_001051915_1_11	GCA_001051915_1_11@C55	10230	10430	GCA_001051915_1_11_700	GCA_001051915_1_11_700	-	764482	.	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain  [Transcription]. 	MENKVKGYRCSLGLTQKKMADILGMSTNSYASKENGKSDFKVKEINKFINFMKKNNIIVDKEIFLQ*	mmseqs_cdd	nonviral_gene	C55	14062	707442	721504	GCA_001051915.1|LFKR01000007.1@region_707443_721504@tool_cenote_CDS_0016	cloud	direct	high	200	0.995	GCA_001051915.1_01791
GCA_001051915.1|LFKR01000007.1@region_707443_721504@tool_cenote	cenote	CDS	717996	718601	GCA_001051915.1	LFKR01000007.1	GCA_001051915.1|LFKR01000007.1	GCA_001051915.1_LFKR01000007.1	GCA_001051915.1|LFKR01000007.1	GCA_001051915_1_11	GCA_001051915_1_11@C55	10555	11160	GCA_001051915_1_11_701	GCA_001051915_1_11_701	+	764482	.	PFAM:PF13744.5	transcriptional-repressor	MKSAKEVGQTIKLIRIGKKLSQKDFSKKIETTVSALSNWENGRNYPKDDYLINISNIFNVPLDIFKYSTKERVTEIVNSLEKRVNENDNYKILYSPKVKNEIIEKATLITDKQQENYNGLLNFSTKQDILNTLNDLIIDENITIGYNFENDNEVFNFIDTELRNFTSKNIKLLISKNANHDLVAKIENELYNAIDNIDKLR*	phrogs_hmm	hypothetical_protein	C55	14062	707442	721504	GCA_001051915.1|LFKR01000007.1@region_707443_721504@tool_cenote_CDS_0017	cloud	direct	high	605	0.998	GCA_001051915.1_01792
GCA_001051915.1|LFKR01000007.1@region_707443_721504@tool_cenote	cenote	CDS	718702	718935	GCA_001051915.1	LFKR01000007.1	GCA_001051915.1|LFKR01000007.1	GCA_001051915.1_LFKR01000007.1	GCA_001051915.1|LFKR01000007.1	GCA_001051915_1_11	GCA_001051915_1_11@C55	11261	11494	GCA_001051915_1_11_702	GCA_001051915_1_11_702	+	764482	.	.	hypothetical protein	MYFNDWKVTINGKGSHDVVTNEDTLLILQDYQHVEIALKLVNDTIQVKSLGYGEDVSINPTTKEITVNVTNLLEDDE*	.	hypothetical_protein	C55	14062	707442	721504	GCA_001051915.1|LFKR01000007.1@region_707443_721504@tool_cenote_CDS_0018	shell	direct	high	233	0.996	GCA_001051915.1_01793
GCA_001051915.1|LFKR01000007.1@region_707443_721504@tool_cenote	cenote	CDS	718957	719430	GCA_001051915.1	LFKR01000007.1	GCA_001051915.1|LFKR01000007.1	GCA_001051915.1_LFKR01000007.1	GCA_001051915.1|LFKR01000007.1	GCA_001051915_1_11	GCA_001051915_1_11@C55	11516	11989	GCA_001051915_1_11_703	GCA_001051915_1_11_703	+	764482	.	.	hypothetical protein	MELKLTDKEANDLLFLSKEILERYNIKLEENCKGEINITSPKVPTKFILNYFIRPGKATLNFRETQYNTCLLRINLNDGFHKNSNNDIVRGNRINIFSEKEYKNKNDLSTHMVAYPLPYKIFEDSSDFVKQLFSVLRYTNTNHNDKIYIETKFQLGW*	.	hypothetical_protein	C55	14062	707442	721504	GCA_001051915.1|LFKR01000007.1@region_707443_721504@tool_cenote_CDS_0019	cloud	direct	high	473	0.998	GCA_001051915.1_01794
GCA_001051915.1|LFKR01000007.1@region_707443_721504@tool_cenote	cenote	CDS	719435	720226	GCA_001051915.1	LFKR01000007.1	GCA_001051915.1|LFKR01000007.1	GCA_001051915.1_LFKR01000007.1	GCA_001051915.1|LFKR01000007.1	GCA_001051915_1_11	GCA_001051915_1_11@C55	11994	12785	GCA_001051915_1_11_704	GCA_001051915_1_11_704	+	764482	.	PF08862.10	Domain of unknown function DUF1829	MNDNEIKSISEDYFNYLKKESKFVPLENESIEFYSPIVDYFGDSISVNISNNIDNYLLTDYGETLWNLEQLGIDLTSHKKQKKYQFLKNIIESNNLVLENKKIQQYIDRKKLPQAIHDYVLAISEISNLAILKKDNIKSLFRDEVIQYFLKNRETYPNVFIEFKVEGKSKLTHNFEAVFPGKTTEYVKTIKQINKNSAKNLLFDWEDVEEYRSKMYDSNARLNIITENEDEISDSVATMLSRYNVEVLPFDDKRKIKRKFSNL*	hhsuite_tools	nonviral_gene	C55	14062	707442	721504	GCA_001051915.1|LFKR01000007.1@region_707443_721504@tool_cenote_CDS_0020	cloud	direct	high	791	0.999	GCA_001051915.1_01795
GCA_001051915.1|LFKR01000007.1@region_707443_721504@tool_cenote	cenote	CDS	720367	721503	GCA_001051915.1	LFKR01000007.1	GCA_001051915.1|LFKR01000007.1	GCA_001051915.1_LFKR01000007.1	GCA_001051915.1|LFKR01000007.1	GCA_001051915_1_11	GCA_001051915_1_11@C55	12926	14062	GCA_001051915_1_11_705	GCA_001051915_1_11_705	+	764482	.	PDB:1Z19_B	Integrase	MIKKYKKKDGSTAYMFVAYLGVDPITRKQKRTTRRGFKTEREAKIAEAKLQTEIQSKGFLNTDITTFKQVYELWIEQYKCTVRESTFVRVSNMFKIKILKEFDNMPIQSITTPYCQKVINYWIENYKDFRNIKVYAANVFEYAVMLKIIHENPFKYTKLPKRTRNKSNEHLTYYSSDELKQFLELIKDDLMYYAMFRLLGFTGMRRGELMALTWEDINFKNKTISIDKTVTIGLNSKEIIQPPKTHSSIRVISIDDRTLSILKNWRVEQRKLCLMHGHNTSNKSQCLFTNLRTNKRLQVQHPNKAMDKICKKYNFKKIKIHGFRHTHCSLLFEAGLSIQEVQDRLGHGDINTTMDVYAHITEKQREKVAEKFANYISF*	common_virus_hmm	common_virus	C55	14062	707442	721504	GCA_001051915.1|LFKR01000007.1@region_707443_721504@tool_cenote_CDS_0021	shell	direct	high	1136	0.999	GCA_001051915.1_01796
GCA_001051915.1|LFKR01000002.1@region_35870_46653@tool_cenote	cenote	CDS	35869	36216	GCA_001051915.1	LFKR01000002.1	GCA_001051915.1|LFKR01000002.1	GCA_001051915.1_LFKR01000002.1	GCA_001051915.1|LFKR01000002.1	GCA_001051915_1_6	GCA_001051915_1_6@C2	1	348	GCA_001051915_1_6_26	GCA_001051915_1_6_26	-	393276	.	NF033788	metalloregulator ArsR/SmtB family transcription factor. Transcriptional repressors that sense toxic heavy metals such as arsenic or cadmium, and are released from DNA so that resistance factors will be expressed, include ArsR, SmtB, ZiaR, CadC, CadX, KmtR, etc. However, some members of this family, including the sporulation delaying system autorepressor SdpR and its family (see NF033789), may lack metal-binding cites and instead regulate other cellular processes.	MSYENACDVICVHEDKVNNALSFLEDDKSKKLLNILEKICDEKKLKIILSLIKEDELCVCDISLILKMSVASTSHHLRLLYKNEVLDFYKDGKMAYYFIKDDEIREFFSKNQKGF*	mmseqs_cdd	nonviral_gene	C2	10784	35869	46653	GCA_001051915.1|LFKR01000002.1@region_35870_46653@tool_cenote_CDS_0001	shell	direct	high	347	0.997	GCA_001051915.1_00263
GCA_001051915.1|LFKR01000002.1@region_35870_46653@tool_cenote	cenote	CDS	36235	36852	GCA_001051915.1	LFKR01000002.1	GCA_001051915.1|LFKR01000002.1	GCA_001051915.1_LFKR01000002.1	GCA_001051915.1|LFKR01000002.1	GCA_001051915_1_6	GCA_001051915_1_6@C2	367	984	GCA_001051915_1_6_27	GCA_001051915_1_6_27	-	393276	.	pfam03596	Cadmium resistance transporter. 	MIQTIVTAAILYIATALDLLVILLMFFARAKTRKEYRDIYIGQYVGSVALIVISLFFAFVLNYVPEKWILGLLGLIPIYLGIKVAIYGDSDGEERAKKELNEKGLSKLVGTIAIVTIASCGADNIGLFVPYFVTLSVTNLLITLFVFLILIFFLVFTAQKLANIPGVGEIVEKFGRWIMAVIYIALGLFIIIENDTIQTILGFIF*	mmseqs_cdd	nonviral_gene	C2	10784	35869	46653	GCA_001051915.1|LFKR01000002.1@region_35870_46653@tool_cenote_CDS_0002	persistent	direct	high	617	0.998	GCA_001051915.1_00264
GCA_001051915.1|LFKR01000002.1@region_35870_46653@tool_cenote	cenote	CDS	37069	37497	GCA_001051915.1	LFKR01000002.1	GCA_001051915.1|LFKR01000002.1	GCA_001051915.1_LFKR01000002.1	GCA_001051915.1|LFKR01000002.1	GCA_001051915_1_6	GCA_001051915_1_6@C2	1201	1629	GCA_001051915_1_6_28	GCA_001051915_1_6_28	-	393276	.	PFAM:PF03592.15	Terminase-small-subunit	MKSLTLKQKQFADEYIRTGNAYQSAVNAGYSVSYARGNAIKLLENVSINQYIDDNLEIIQKESIAETDEIMRYLTRVLRAEEREEILVYVGDGMQEIQTIQPSTKDRIKAAELLGKRYRMWTDKHEVEITTPIFIDDVPEED*	hallmark_hmm	common_virus	C2	10784	35869	46653	GCA_001051915.1|LFKR01000002.1@region_35870_46653@tool_cenote_CDS_0003	shell	direct	high	428	0.998	GCA_001051915.1_00265
GCA_001051915.1|LFKR01000002.1@region_35870_46653@tool_cenote	cenote	CDS	37523	37762	GCA_001051915.1	LFKR01000002.1	GCA_001051915.1|LFKR01000002.1	GCA_001051915.1_LFKR01000002.1	GCA_001051915.1|LFKR01000002.1	GCA_001051915_1_6	GCA_001051915_1_6@C2	1655	1894	GCA_001051915_1_6_29	GCA_001051915_1_6_29	-	393276	.	PFAM:PF03592.15	Terminase-small-subunit	MKKLTTKQRRFADEYIETGNPYYSALKVGYSKVYARDNALKLLENVSVKSYIHERLEEIKNDNMAENYGVMRYLTRLIK*	hallmark_hmm	common_virus	C2	10784	35869	46653	GCA_001051915.1|LFKR01000002.1@region_35870_46653@tool_cenote_CDS_0004	shell	direct	high	239	0.996	GCA_001051915.1_00266
GCA_001051915.1|LFKR01000002.1@region_35870_46653@tool_cenote	cenote	CDS	37817	38338	GCA_001051915.1	LFKR01000002.1	GCA_001051915.1|LFKR01000002.1	GCA_001051915.1_LFKR01000002.1	GCA_001051915.1|LFKR01000002.1	GCA_001051915_1_6	GCA_001051915_1_6@C2	1949	2470	GCA_001051915_1_6_30	GCA_001051915_1_6_30	-	393276	.	PFAM:PF09979.8	head-maturation-protease	MKTLKQIEVHKKNIESYQKDIQALEQEVNSEKEKIDQLNADYQELVVSGQVEKADKLYTKIDKQETTYKAKVKRLSVMKQSLKQVIIKNCSSMQEEADKLSDEYIDIYYDDLQHYNKLKEELKQAEQKLEEHNNSYLLNQRNLSHYIDRLIRENNIQATEFMGSVNSRKPFYI*	phrogs_hmm	hypothetical_protein	C2	10784	35869	46653	GCA_001051915.1|LFKR01000002.1@region_35870_46653@tool_cenote_CDS_0005	shell	direct	high	521	0.998	GCA_001051915.1_00267
GCA_001051915.1|LFKR01000002.1@region_35870_46653@tool_cenote	cenote	CDS	38350	38583	GCA_001051915.1	LFKR01000002.1	GCA_001051915.1|LFKR01000002.1	GCA_001051915.1_LFKR01000002.1	GCA_001051915.1|LFKR01000002.1	GCA_001051915_1_6	GCA_001051915_1_6@C2	2482	2715	GCA_001051915_1_6_31	GCA_001051915_1_6_31	-	393276	.	.	hypothetical protein	MNNDEMNKLSEALELSESQRLALYSYSERQAKEKAQTQEQKKELSSLEKHKKRQQIMSIKDANQRQEEIAKHVELFK*	.	hypothetical_protein	C2	10784	35869	46653	GCA_001051915.1|LFKR01000002.1@region_35870_46653@tool_cenote_CDS_0006	shell	direct	high	233	0.996	GCA_001051915.1_00268
GCA_001051915.1|LFKR01000002.1@region_35870_46653@tool_cenote	cenote	CDS	38573	39415	GCA_001051915.1	LFKR01000002.1	GCA_001051915.1|LFKR01000002.1	GCA_001051915.1_LFKR01000002.1	GCA_001051915.1|LFKR01000002.1	GCA_001051915_1_6	GCA_001051915_1_6@C2	2705	3547	GCA_001051915_1_6_32	GCA_001051915_1_6_32	-	393276	.	PFAM:PF05263.10	spore-coat-protein	MASLKQAYQPDTDAEEIEMISDDTLFTVYNPKFIEEKKQMIEDYIETLYERNTPNMVCDPVTQMVYYQSQNLESLVMYIIEEKKKLNAFIRKSNRNLYHLYAVLDGYTDEERAFLMNYIKHAKVRDNELVRRFKIDFYEHLKVVREKRQEEHNKKSFNAYLVDKDEVRKRQQKKKINNGYGLTLNQEKELRLIKEHEEERNTDMAVFINLIQQMNNDELLSYVLDRHEFNIDSYNLKILTDAALYRLPLKQRKQAYNHLKAITRTLTNNPIEKRLKQYEQ*	phrogs_hmm	hypothetical_protein	C2	10784	35869	46653	GCA_001051915.1|LFKR01000002.1@region_35870_46653@tool_cenote_CDS_0007	shell	direct	high	842	0.999	GCA_001051915.1_00269
GCA_001051915.1|LFKR01000002.1@region_35870_46653@tool_cenote	cenote	CDS	39469	40266	GCA_001051915.1	LFKR01000002.1	GCA_001051915.1|LFKR01000002.1	GCA_001051915.1_LFKR01000002.1	GCA_001051915.1|LFKR01000002.1	GCA_001051915_1_6	GCA_001051915_1_6@C2	3601	4398	GCA_001051915_1_6_33	GCA_001051915_1_6_33	-	393276	.	PDB:4M4W_K	Replicative-helicase	MKSINDIDLKSKMRSELIEEQYNLKCDKCKNIYSYHKFRKSDGTIQIIRNGCECESIEKGKQSRSQHKANQKRLNIEKVFKQSMMNDDLLKAEFDNYKPTNKNLLEAKQILQKYAANFKPDKPKSLLLQGSYGIGKSHLAMSVVREVKKKGYTALFLDVTELVKAYRNTYNKNVAMTEKELDQMIRDVDLLVIDDYGTTVNDYGNEKLFSLTDMRTGKSNIITTNREALELSNNDDKAKRFSRLMKNTQIIKMHGTDYRLKDFKS*	rep_hall_hmm	common_virus	C2	10784	35869	46653	GCA_001051915.1|LFKR01000002.1@region_35870_46653@tool_cenote_CDS_0008	shell	direct	high	797	0.999	GCA_001051915.1_00270
GCA_001051915.1|LFKR01000002.1@region_35870_46653@tool_cenote	cenote	CDS	40279	41073	GCA_001051915.1	LFKR01000002.1	GCA_001051915.1|LFKR01000002.1	GCA_001051915.1_LFKR01000002.1	GCA_001051915.1|LFKR01000002.1	GCA_001051915_1_6	GCA_001051915_1_6@C2	4411	5205	GCA_001051915_1_6_34	GCA_001051915_1_6_34	-	393276	.	PFAM:PF07261.10	DNA-polymerase-B	MSDRLIDYTGGYGNVYKTITKDPNLSIEAKGIYAYLSSYAGGKDVAFPSISLICHELNISEKRFYKHRKELIDKNIISVHRERTNNGFSKSIYTINHHFVHSQNVHVQNDNVRNESVQNVHVQNVGTKKNNIKKNNIKKNKEKKNSSSSASTTKQQPPSHSYSNVFNFYQENGFGILQPFVVDQIENWIDDFNGNENIVIEALKEAATNNVCKWSYANSILKSWYQDGIKSIDDIEARRKQREASKNKTESTKTFDNSQYADLF*	rep_hall_hmm	common_virus	C2	10784	35869	46653	GCA_001051915.1|LFKR01000002.1@region_35870_46653@tool_cenote_CDS_0009	shell	direct	high	794	0.999	GCA_001051915.1_00271
GCA_001051915.1|LFKR01000002.1@region_35870_46653@tool_cenote	cenote	CDS	41101	41325	GCA_001051915.1	LFKR01000002.1	GCA_001051915.1|LFKR01000002.1	GCA_001051915.1_LFKR01000002.1	GCA_001051915.1|LFKR01000002.1	GCA_001051915_1_6	GCA_001051915_1_6@C2	5233	5457	GCA_001051915_1_6_35	GCA_001051915_1_6_35	-	393276	.	PFAM:PF04492.12	DnaD-like-helicase-loader	MTNKIKCSKGYGVITQSVMSSKDISIEAKALYCYYMAHVGDNIIPSATQTCNDLMISYKRFKTLRTQLFERGFL*	phrogs_hmm	hypothetical_protein	C2	10784	35869	46653	GCA_001051915.1|LFKR01000002.1@region_35870_46653@tool_cenote_CDS_0010	shell	direct	high	224	0.996	GCA_001051915.1_00272
GCA_001051915.1|LFKR01000002.1@region_35870_46653@tool_cenote	cenote	CDS	41348	41662	GCA_001051915.1	LFKR01000002.1	GCA_001051915.1|LFKR01000002.1	GCA_001051915.1_LFKR01000002.1	GCA_001051915.1|LFKR01000002.1	GCA_001051915_1_6	GCA_001051915_1_6@C2	5480	5794	GCA_001051915_1_6_36	GCA_001051915_1_6_36	-	393276	.	pfam07342	Protein of unknown function (DUF1474). This family consists of several bacterial proteins of around 100 residues in length. Members of this family seem to be found exclusively in Staphylococcus aureus. The function of this family is unknown.	MNWEQKNILSDLEILKEKLEDLYTTHAWHFDDIYIKREIQTQEETSRYLMEYSENRIQHTQHSDLLHMYLKEFESLLKRFKELDKKETLSAPTKVTDNEELKNY*	mmseqs_cdd	nonviral_gene	C2	10784	35869	46653	GCA_001051915.1|LFKR01000002.1@region_35870_46653@tool_cenote_CDS_0011	shell	direct	high	314	0.997	GCA_001051915.1_00273
GCA_001051915.1|LFKR01000002.1@region_35870_46653@tool_cenote	cenote	CDS	41662	42060	GCA_001051915.1	LFKR01000002.1	GCA_001051915.1|LFKR01000002.1	GCA_001051915.1_LFKR01000002.1	GCA_001051915.1|LFKR01000002.1	GCA_001051915_1_6	GCA_001051915_1_6@C2	5794	6192	GCA_001051915_1_6_37	GCA_001051915_1_6_37	-	393276	.	.	hypothetical protein	MKNLNNKQTEKIIYQLYKDRMNLEEELIFEERFDRDRAIIKVMFERWGMEPEAHDKLAGAIALKYRKVFETYMNVTNLIIHFKTNKLNLTDFASTENLRDLFILQNALNELIANIRNQHKNYIVVHRNGGAK*	.	hypothetical_protein	C2	10784	35869	46653	GCA_001051915.1|LFKR01000002.1@region_35870_46653@tool_cenote_CDS_0012	cloud	direct	high	398	0.997	GCA_001051915.1_00274
GCA_001051915.1|LFKR01000002.1@region_35870_46653@tool_cenote	cenote	CDS	42116	42316	GCA_001051915.1	LFKR01000002.1	GCA_001051915.1|LFKR01000002.1	GCA_001051915.1_LFKR01000002.1	GCA_001051915.1|LFKR01000002.1	GCA_001051915_1_6	GCA_001051915_1_6@C2	6248	6448	GCA_001051915_1_6_38	GCA_001051915_1_6_38	-	393276	.	.	hypothetical protein	MFKLIRFLNELAYICVITIFLNMYSELHYALVFFLFGSMIAALKFDMRDEEHSYLYKAYRQHLRNR*	.	hypothetical_protein	C2	10784	35869	46653	GCA_001051915.1|LFKR01000002.1@region_35870_46653@tool_cenote_CDS_0013	shell	direct	moderate	192	0.955	GCA_001051915.1_00275
GCA_001051915.1|LFKR01000002.1@region_35870_46653@tool_cenote	cenote	CDS	42382	42651	GCA_001051915.1	LFKR01000002.1	GCA_001051915.1|LFKR01000002.1	GCA_001051915.1_LFKR01000002.1	GCA_001051915.1|LFKR01000002.1	GCA_001051915_1_6	GCA_001051915_1_6@C2	6514	6783	GCA_001051915_1_6_39	GCA_001051915_1_6_39	-	393276	.	PFAM:PF10013.8	excisionase-and-transcriptional-regulator	MAEQQSILSESASLELANGILKLAEQIAQRKIEQQQKRWATQTELRKLYRCTHSDITEWERLGLTKRKQGRSYYYDLKEVEEFLLSQKK*	phrogs_hmm	hypothetical_protein	C2	10784	35869	46653	GCA_001051915.1|LFKR01000002.1@region_35870_46653@tool_cenote_CDS_0014	shell	direct	high	269	0.996	GCA_001051915.1_00276
GCA_001051915.1|LFKR01000002.1@region_35870_46653@tool_cenote	cenote	CDS	42654	42854	GCA_001051915.1	LFKR01000002.1	GCA_001051915.1|LFKR01000002.1	GCA_001051915.1_LFKR01000002.1	GCA_001051915.1|LFKR01000002.1	GCA_001051915_1_6	GCA_001051915_1_6@C2	6786	6986	GCA_001051915_1_6_40	GCA_001051915_1_6_40	-	393276	.	PFAM:PF10078.8	transcriptional-regulator	MKNNLSMLMGKKKINTTKLSEETGISRNAIYGLYHERTINPDLQNLIKLCEYFEVTLNDFFDIKEE*	phrogs_hmm	hypothetical_protein	C2	10784	35869	46653	GCA_001051915.1|LFKR01000002.1@region_35870_46653@tool_cenote_CDS_0015	cloud	direct	high	200	0.995	GCA_001051915.1_00277
GCA_001051915.1|LFKR01000002.1@region_35870_46653@tool_cenote	cenote	CDS	42996	43751	GCA_001051915.1	LFKR01000002.1	GCA_001051915.1|LFKR01000002.1	GCA_001051915.1_LFKR01000002.1	GCA_001051915.1|LFKR01000002.1	GCA_001051915_1_6	GCA_001051915_1_6@C2	7128	7883	GCA_001051915_1_6_41	GCA_001051915_1_6_41	+	393276	.	PFAM:PF13744.5	transcriptional-repressor	MNFGEILKKEREGFGISVKKLSELSSVSTTYISKLENNKRNFPTAEIIYNLLFGFKNLIEERYGTTKNISEVNSSYLKEILDKFINADDSNLKQKNIDLMYQYFDDFYNEKMQTIMNDNSQIEESIFLNKIQIEKGTTNKKELDKPYFDLNWLLKQKDFEIFYGRDFIFDKNINNKKTLNEREMYFYNILNEQDIETIKKLIETFLENKYSRVKQDKVNELFNMFTNKQNIENNQFNNSLTYFELLKNMRI*	phrogs_hmm	hypothetical_protein	C2	10784	35869	46653	GCA_001051915.1|LFKR01000002.1@region_35870_46653@tool_cenote_CDS_0016	cloud	direct	high	755	0.999	GCA_001051915.1_00278
GCA_001051915.1|LFKR01000002.1@region_35870_46653@tool_cenote	cenote	CDS	43877	45013	GCA_001051915.1	LFKR01000002.1	GCA_001051915.1|LFKR01000002.1	GCA_001051915.1_LFKR01000002.1	GCA_001051915.1|LFKR01000002.1	GCA_001051915_1_6	GCA_001051915_1_6@C2	8009	9145	GCA_001051915_1_6_42	GCA_001051915_1_6_42	+	393276	.	PDB:1Z19_B	Integrase	MIKKYKKKDGSTAYMFVAYLGVDPITRKQKRTTRRGFKTEREAKIAEAKLQTEVQANGFLNTEIMTFKQIYELWLEQYRNTVKESTYQQAMTTFKMMILPHFKDMAIKDITVPHCQKVLNEWYRTYSETKKGRIYASTVFEYAISLKIITDNPFNHIKAPRKKSNQKHETMKYYTSDELQQFLELVKDNVLHHALFRTLAFTGIRRGELMALTWNDIDFTNQTLSVNKTLAEGLNHRQFIDTPKTRSSIRTISVDSKTLEVLKEWRTQQRVLSLKHGHNTSSKHQEIFTNVETNKRLNRVYANETLNLICKKNNFKRITVHGFRHTHCSLLFEAGLSVQEVQDRLGHGDIQTTMGIYAHVTEKQREKVAEKFANYVSF*	common_virus_hmm	common_virus	C2	10784	35869	46653	GCA_001051915.1|LFKR01000002.1@region_35870_46653@tool_cenote_CDS_0017	shell	direct	high	1136	0.999	GCA_001051915.1_00279
GCA_001051915.1|LFKR01000002.1@region_35870_46653@tool_cenote	cenote	CDS	45093	45335	GCA_001051915.1	LFKR01000002.1	GCA_001051915.1|LFKR01000002.1	GCA_001051915.1_LFKR01000002.1	GCA_001051915.1|LFKR01000002.1	GCA_001051915_1_6	GCA_001051915_1_6@C2	9225	9467	GCA_001051915_1_6_43	GCA_001051915_1_6_43	-	393276	.	TIGR00394	phosphotransferase system, lactose specific, IIC component. This family of proteins models the IIC domain of the phosphotransferase system (PTS) for lactose. The IIC domain catalyzes the transfer of a phosphoryl group from the IIB domain to lactose. When the IIC component and IIB components are in the same polypeptide chain they are designated IIBC. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]	MNKLIAWIEKGKPFFEKISRNIYLRAIRDGFIAAIPIILFSSIFILITYVPNVFGFTWSKTMEGILMKPYNYTMGIVGIS*	mmseqs_cdd	nonviral_gene	C2	10784	35869	46653	GCA_001051915.1|LFKR01000002.1@region_35870_46653@tool_cenote_CDS_0018	persistent	direct	high	242	0.996	GCA_001051915.1_00280
GCA_001051915.1|LFKR01000002.1@region_35870_46653@tool_cenote	cenote	CDS	45341	45655	GCA_001051915.1	LFKR01000002.1	GCA_001051915.1|LFKR01000002.1	GCA_001051915.1_LFKR01000002.1	GCA_001051915.1|LFKR01000002.1	GCA_001051915_1_6	GCA_001051915_1_6@C2	9473	9787	GCA_001051915_1_6_44	GCA_001051915_1_6_44	-	393276	.	TIGR00823	phosphotransferase system enzyme II, lactose-specific, factor III. The PTS Lactose-N,N?-Diacetylchitobiose-b-glucoside (Lac) Family (TC 4.A.3)Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as the E. coli N,N?-diacetylchitobiose (Chb)permease which can transport aromatic b-glucosides and cellobiose as well as the chitin disaccharide, Chb, but only Chb induces expression of the chboperon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]	MNREEVQLLGFEIVAYAGDARSKLLEALNAANEGDFEKAEQLTEEANECIANAHKAQTNLLAQEAQGDDIAFSITMIHGQDHLMTTLLLKDLMKHLIELYKKGS*	mmseqs_cdd	nonviral_gene	C2	10784	35869	46653	GCA_001051915.1|LFKR01000002.1@region_35870_46653@tool_cenote_CDS_0019	persistent	direct	high	314	0.997	GCA_001051915.1_00281
GCA_001051915.1|LFKR01000002.1@region_35870_46653@tool_cenote	cenote	CDS	45675	46652	GCA_001051915.1	LFKR01000002.1	GCA_001051915.1|LFKR01000002.1	GCA_001051915.1_LFKR01000002.1	GCA_001051915.1|LFKR01000002.1	GCA_001051915_1_6	GCA_001051915_1_6@C2	9807	10784	GCA_001051915_1_6_45	GCA_001051915_1_6_45	-	393276	.	TIGR01232	tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation. [Energy metabolism, Biosynthesis and degradation of polysaccharides]	MTKSQQKLASIEQLSNQDGIISALAFDQRGALKRMMAEHQTEPPTVEQIEQLKVLVSEELTQYASSILLDPEYGLPASDARNKECGLLLAYEKTGYDVNAKGRLPDCLVEWSAKRLKEQGANAVKFLLYYDVDDSEEINIQKKAYIERIGSECVAEDIPFFLEVLTYDDNIPDNKSAEFAKVKPRKVNEAMKLFSEDRFNVDVLKVEVPVNMNFVEGFTEGEVVYTKEEAAQHFRDQDAATHLPYIYLSAGVSAELFQDTLTFAHDAGAHFNGVLCGRATWSGAVKVYIEQGEQAAREWLRTTGYKNIDDLNKVLKTTATSWKAK*	mmseqs_cdd	nonviral_gene	C2	10784	35869	46653	GCA_001051915.1|LFKR01000002.1@region_35870_46653@tool_cenote_CDS_0020	persistent	direct	high	977	0.999	GCA_001051915.1_00282