core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_001063965.1|JVQC01000029.1@region_37252_44748@tool_cenote	cenote	CDS	37251	37580	GCA_001063965.1	JVQC01000029.1	GCA_001063965.1|JVQC01000029.1	GCA_001063965.1_JVQC01000029.1	GCA_001063965.1|JVQC01000029.1	GCA_001063965_1_26	GCA_001063965_1_26@C2	1	330	GCA_001063965_1_26_32	GCA_001063965_1_26_32	-	44747	.	PFAM:PF10078.8	HTH-DNA-binding-protein	MRNAAQWLDLFKRYKNIRSDYKLANHWHVSQSRICQYRSGRLKLPLAFVLEIAEECGRDPLEIIVSLAYPKAREQDKPGLSDVYWRVAVSGIMHEMRINSLPSGWRPRR*	phrogs_hmm	hypothetical_protein	C2	7497	37251	44748	GCA_001063965.1|JVQC01000029.1@region_37252_44748@tool_cenote_CDS_0001	cloud	direct	high	329	0.997	GCA_001063965.1_00507
GCA_001063965.1|JVQC01000029.1@region_37252_44748@tool_cenote	cenote	CDS	37657	37896	GCA_001063965.1	JVQC01000029.1	GCA_001063965.1|JVQC01000029.1	GCA_001063965.1_JVQC01000029.1	GCA_001063965.1|JVQC01000029.1	GCA_001063965_1_26	GCA_001063965_1_26@C2	407	646	GCA_001063965_1_26_33	GCA_001063965_1_26_33	-	44747	.	.	hypothetical protein	MRKLKGGHMPSKHIQDEIWEKVREEFVRAVVLTKSGFKETEILNLLIKKGIEAVRDEDYLTFVMEKDRKRPSEKPPAHR*	.	hypothetical_protein	C2	7497	37251	44748	GCA_001063965.1|JVQC01000029.1@region_37252_44748@tool_cenote_CDS_0002	cloud	direct	moderate	216	0.9	GCA_001063965.1_00508
GCA_001063965.1|JVQC01000029.1@region_37252_44748@tool_cenote	cenote	CDS	38014	38316	GCA_001063965.1	JVQC01000029.1	GCA_001063965.1|JVQC01000029.1	GCA_001063965.1_JVQC01000029.1	GCA_001063965.1|JVQC01000029.1	GCA_001063965_1_26	GCA_001063965_1_26@C2	764	1066	GCA_001063965_1_26_34	GCA_001063965_1_26_34	+	44747	.	.	hypothetical protein	MKQSSMYPRAMDILNPELGEVVVFEEGNAVFYVLYPRFVEKVCLGSVADYCCESWHCFVSGGVAPGFSKTEFSLLSERGRDVYRRVCLRREEEAARGLLV*	.	hypothetical_protein	C2	7497	37251	44748	GCA_001063965.1|JVQC01000029.1@region_37252_44748@tool_cenote_CDS_0003	cloud	direct	high	302	0.997	GCA_001063965.1_00509
GCA_001063965.1|JVQC01000029.1@region_37252_44748@tool_cenote	cenote	CDS	38313	39524	GCA_001063965.1	JVQC01000029.1	GCA_001063965.1|JVQC01000029.1	GCA_001063965.1_JVQC01000029.1	GCA_001063965.1|JVQC01000029.1	GCA_001063965_1_26	GCA_001063965_1_26@C2	1063	2274	GCA_001063965_1_26_35	GCA_001063965_1_26_35	+	44747	.	PFAM:PF02486.18	Replication-initiation-factor	MRTAACTSSRNSAAQAVFNPPTSNTGGTGKAEGWDLNGRAAASVSESYEHVIRTNGKTKTIPLKRGNGKAAFIDYLTIVFRDSVFKEMAEWEADLYTTYRAKPQAECIGGDWLLDKGTGRTFQIGARGASKICRVYEKGKEQGDSQSPWVRVEVQMRNRDYLLLPDMLVEPGSYFAGAYPALELLAAKYGETPSRAEVKKKIEEISVEHVIKYASMQCGRAIVMLEEYGMDDKTIKEVLKDGKKEMPRRLKKEAFDCGHLVIRQIHERRRQIKSERELNELRTKDNAPERMQTPPRPAPVRKYSSMQDFLKEKERLERMAAKGFSRLIYKAETEIEREAIRRDRHAWLRIKCHQETGEARADYVEVLKEYLEELDWARYATPSWLLNPKFTPLPITDSEQPAE*	rep_hall_hmm	common_virus	C2	7497	37251	44748	GCA_001063965.1|JVQC01000029.1@region_37252_44748@tool_cenote_CDS_0004	cloud	direct	high	1211	0.999	GCA_001063965.1_00510
GCA_001063965.1|JVQC01000029.1@region_37252_44748@tool_cenote	cenote	CDS	39607	39906	GCA_001063965.1	JVQC01000029.1	GCA_001063965.1|JVQC01000029.1	GCA_001063965.1_JVQC01000029.1	GCA_001063965.1|JVQC01000029.1	GCA_001063965_1_26	GCA_001063965_1_26@C2	2357	2656	GCA_001063965_1_26_36	GCA_001063965_1_26_36	+	44747	.	PFAM:PF07459.10	RstB-protein	MTLRKVAWNKGVTDNGVEYDYTRITCEIPIYEGSPKEFGVETFELEYGPESRHHELMHLKGKLPVQVEIGYMEAKKGKNLIRVVQSLRVLDDPKDKKTS*	common_virus_hmm	common_virus	C2	7497	37251	44748	GCA_001063965.1|JVQC01000029.1@region_37252_44748@tool_cenote_CDS_0005	cloud	direct	high	300	1.0	GCA_001063965.1_00511
GCA_001063965.1|JVQC01000029.1@region_37252_44748@tool_cenote	cenote	CDS	39976	40191	GCA_001063965.1	JVQC01000029.1	GCA_001063965.1|JVQC01000029.1	GCA_001063965.1_JVQC01000029.1	GCA_001063965.1|JVQC01000029.1	GCA_001063965_1_26	GCA_001063965_1_26@C2	2726	2941	GCA_001063965_1_26_37	GCA_001063965_1_26_37	+	44747	.	PFAM:PF10389.8	coat-protein-B	MKNILKKHGLKAVFVAAPLALAQQAYAAVPTEVTQALTDAKTDSVSVAGMVLGISIAIFGVMILSRFFNRG*	hallmark_hmm	common_virus	C2	7497	37251	44748	GCA_001063965.1|JVQC01000029.1@region_37252_44748@tool_cenote_CDS_0006	cloud	direct	high	215	0.995	GCA_001063965.1_00512
GCA_001063965.1|JVQC01000029.1@region_37252_44748@tool_cenote	cenote	CDS	40271	40534	GCA_001063965.1	JVQC01000029.1	GCA_001063965.1|JVQC01000029.1	GCA_001063965.1_JVQC01000029.1	GCA_001063965.1|JVQC01000029.1	GCA_001063965_1_26	GCA_001063965_1_26@C2	3021	3284	GCA_001063965_1_26_38	GCA_001063965_1_26_38	+	44747	.	.	hypothetical protein	MAGILSDVGVVGWLVLGIYAALFGVKVILSIREFNIKKRNRNRRAREKEIRRLRSDISYSRRMRFYEARTNYYNRRARLYSGRRGRW*	.	hypothetical_protein	C2	7497	37251	44748	GCA_001063965.1|JVQC01000029.1@region_37252_44748@tool_cenote_CDS_0007	.	unmatched_CDS	none	0	0	.
GCA_001063965.1|JVQC01000029.1@region_37252_44748@tool_cenote	cenote	CDS	40538	40822	GCA_001063965.1	JVQC01000029.1	GCA_001063965.1|JVQC01000029.1	GCA_001063965.1_JVQC01000029.1	GCA_001063965.1|JVQC01000029.1	GCA_001063965_1_26	GCA_001063965_1_26@C2	3288	3572	GCA_001063965_1_26_39	GCA_001063965_1_26_39	+	44747	.	.	hypothetical protein	MGYQIGNVCYADKQDAENAHFSQVLPVLTADGKILQMNYQGGQWAYNGVAVHADFPQCDQRRNLEDGMLLGWLVFAIAASVWGLRILVNRLRVR*	.	hypothetical_protein	C2	7497	37251	44748	GCA_001063965.1|JVQC01000029.1@region_37252_44748@tool_cenote_CDS_0008	cloud	direct	high	284	0.996	GCA_001063965.1_00513
GCA_001063965.1|JVQC01000029.1@region_37252_44748@tool_cenote	cenote	CDS	41042	42643	GCA_001063965.1	JVQC01000029.1	GCA_001063965.1|JVQC01000029.1	GCA_001063965.1_JVQC01000029.1	GCA_001063965.1|JVQC01000029.1	GCA_001063965_1_26	GCA_001063965_1_26@C2	3792	5393	GCA_001063965_1_26_40	GCA_001063965_1_26_40	+	44747	.	PFAM:PF05616.12	attachment-protein	MKKFLLVLLLFPLWAAAQNIVQFTGGNYIFAEDGKLIFNIEHSDFESRNWVYDAKTDKVKTLFYQRMDFKTRNSSNFHAYEMAQVDQNGGRFQKAVYNPYANGGYRAQKVFWPVVWQGAVRLGGMFIPRFAARGIAACMANLTCRSWAASAAGHAAGLCALAYSGAVYNMPFGFCERAKEGGFEKNGKGEFERPAGGLSWEVQYYEYPCNGSCTPNQKIVYYDNQDAADFAKEQMADFYRQAKFSDCQPHERRYESGPYRGFVEAAGCQWHEFRIVPKEDKEPQPMTIVDIEDFVIKDIKKNPNDWANDKGEIGKKVREEIQPTRGDIDTKGGTLSIVGDVYRDNNGQAKQELINVDAPSDWQTPKAGGKVGEPSPGESTTSNNTSVVIKDRPDLESESKPSAGNDPNNGKGSGGKSGGSLGDGNSGKEGGGQEGKRCEAGSDRLECAQMGDVDQGQGFDIPGVEDGTTWKPDEFLPRGGTCPAPRVVSLILVNRTYEIKYDPICDFASKIRGLVVGFAVLTAGFIMFGRRSG*	common_virus_hmm	common_virus	C2	7497	37251	44748	GCA_001063965.1|JVQC01000029.1@region_37252_44748@tool_cenote_CDS_0009	cloud	direct	high	1601	0.999	GCA_001063965.1_00514
GCA_001063965.1|JVQC01000029.1@region_37252_44748@tool_cenote	cenote	CDS	42658	42945	GCA_001063965.1	JVQC01000029.1	GCA_001063965.1|JVQC01000029.1	GCA_001063965.1_JVQC01000029.1	GCA_001063965.1|JVQC01000029.1	GCA_001063965_1_26	GCA_001063965_1_26@C2	5408	5695	GCA_001063965_1_26_41	GCA_001063965_1_26_41	+	44747	.	PFAM:PF10734.8	Minor-Head-Virion-Protein	MKFLIGKLQGLLKWFGGSILTALGVSFVTYKGFQWGLDSLKDYFSRSVDSLPADAYQLFMMAGGGYAAGIIFGAFAFNVTLSATSKLSFGKGGKK*	hallmark_hmm	common_virus	C2	7497	37251	44748	GCA_001063965.1|JVQC01000029.1@region_37252_44748@tool_cenote_CDS_0010	.	unmatched_CDS	none	0	0	.
GCA_001063965.1|JVQC01000029.1@region_37252_44748@tool_cenote	cenote	CDS	42942	44114	GCA_001063965.1	JVQC01000029.1	GCA_001063965.1|JVQC01000029.1	GCA_001063965.1_JVQC01000029.1	GCA_001063965.1|JVQC01000029.1	GCA_001063965_1_26	GCA_001063965_1_26@C2	5692	6864	GCA_001063965_1_26_42	GCA_001063965_1_26_42	+	44747	.	PFAM:PF05707.11	Zonular-occludens-toxin-(Zot)	MIILQTGVPGSGKTASVVDMLMNDETYTHFTDKDGEKKERPLYVNGVNELRLPHNELTDDEIRAQPLQDFLPYGSLVVIDEAQRLFPPRSAGAKVPHYVEGLATHRHHGLDIVFITQDPSFLDNFVRKLVGRHVHVRVLTIGRKLFEWTKCEDKPDSPGALSLAVERSFKLPKETFDMYKSAEVHTKPGRRLPRIFYFMILFLPALLGFGYWTYGRIHTRFFGEEEKPAAVAQESAQTAAAGGVNTSAPSRGASPFPAASDGRISQTLEPAMFVPSIPEKPESKPLYDGLRQVRQYERVAACIEGGKSGCTCYSDQATKLREIPEAKCRDYAQNGLPFDPFREPLREVFGGEVGQNEAAAGSSSGGSVLALSGRDKYLPTPKFGDGPSAQ*	hallmark_hmm	common_virus	C2	7497	37251	44748	GCA_001063965.1|JVQC01000029.1@region_37252_44748@tool_cenote_CDS_0011	cloud	ambiguous	low	359	0.306	GCA_001063965.1_00516
GCA_001063965.1|JVQC01000029.1@region_37252_44748@tool_cenote	cenote	CDS	44179	44331	GCA_001063965.1	JVQC01000029.1	GCA_001063965.1|JVQC01000029.1	GCA_001063965.1_JVQC01000029.1	GCA_001063965.1|JVQC01000029.1	GCA_001063965_1_26	GCA_001063965_1_26@C2	6929	7081	GCA_001063965_1_26_43	GCA_001063965_1_26_43	+	44747	.	.	hypothetical protein	MIAYAFCMVGLFILFFPADQENPRHKWFIYAKSFSGVGLFFVALYLYFFC*	.	hypothetical_protein	C2	7497	37251	44748	GCA_001063965.1|JVQC01000029.1@region_37252_44748@tool_cenote_CDS_0012	.	unmatched_CDS	none	0	0	.
GCA_001063965.1|JVQC01000046.1@region_36636_59622@tool_cenote	cenote	CDS	36635	37045	GCA_001063965.1	JVQC01000046.1	GCA_001063965.1|JVQC01000046.1	GCA_001063965.1_JVQC01000046.1	GCA_001063965.1|JVQC01000046.1	GCA_001063965_1_43	GCA_001063965_1_43@C3	1	411	GCA_001063965_1_43_35	GCA_001063965_1_43_35	+	88988	.	COG3895	Membrane-bound inhibitor of C-type lysozyme [Cell wall/membrane/envelope biogenesis]. 	MKAKILTALAAALALAACAAPEYDHGHERGHEHEHRHDHAREHRGGEGREGQGGGRFECENGLSVQARRAGGNRMELNMDGKTAVLSGDIAASGERYVSANGLYGKATEWHQKGGEAYFEFTDPYGNKVETSCRAR*	mmseqs_cdd	nonviral_gene	C3	22987	36635	59622	GCA_001063965.1|JVQC01000046.1@region_36636_59622@tool_cenote_CDS_0001	persistent	direct	high	410	0.998	GCA_001063965.1_00918
GCA_001063965.1|JVQC01000046.1@region_36636_59622@tool_cenote	cenote	CDS	37179	38243	GCA_001063965.1	JVQC01000046.1	GCA_001063965.1|JVQC01000046.1	GCA_001063965.1_JVQC01000046.1	GCA_001063965.1|JVQC01000046.1	GCA_001063965_1_43	GCA_001063965_1_43@C3	545	1609	GCA_001063965_1_43_36	GCA_001063965_1_43_36	-	88988	.	cd08233	(2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer.  NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones.  The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.	MKAARFYNKGDIRIEDIPEPTVAPGTVGINVAWCGICGTDLHEFMEGPIFIPPCGHPHPISGESAPVTMGHEFSGVVYAVGEGVDDIKVGQHVVVEPYIVRDDVPTGPGSNYHLSKDMNFIGLGGCGGGLSEKIAVKRRWVHPISDKIPLDQAALIEPLSVGHHAYVRSGAKAGDTALVGGAGPIGLLLAAVLKAKGLKVIITELSKARKDKAREAGVADHILDPSEVDVVEEVKKLTNGEGVDVAFECTSVNKVMDTLIEACKPTAKMVIVSIWSHPATINVHSVVMKELDIRGTIAYCNDHQETIKLVEEGKINLEPFITQRIKLDELISEGFERLIHNNESAVKIIVNPNL*	mmseqs_cdd	nonviral_gene	C3	22987	36635	59622	GCA_001063965.1|JVQC01000046.1@region_36636_59622@tool_cenote_CDS_0002	persistent	direct	high	1064	0.999	GCA_001063965.1_00919
GCA_001063965.1|JVQC01000046.1@region_36636_59622@tool_cenote	cenote	CDS	38497	40845	GCA_001063965.1	JVQC01000046.1	GCA_001063965.1|JVQC01000046.1	GCA_001063965.1_JVQC01000046.1	GCA_001063965.1|JVQC01000046.1	GCA_001063965_1_43	GCA_001063965_1_43@C3	1863	4211	GCA_001063965_1_43_37	GCA_001063965_1_43_37	-	88988	.	PDB:1OYW_A	ATP-dependent-DNA-helicase	MSKPRAIEILNEVFGYPAFRGSQEEIVETLAAGQSLMVLMPTGGGKSLCYQIPALMLDGTAIVVSPLIALMNDQVANLRAAGVHCAAVHSGTSAEEARQIAEDIAQGRLKLLYVSPERLVTERFLRFLDHTPVSLFAIDEAHCVSQWGHDFRPEYRQLGLLADRYPAVPRIALTATADAETRADIKHYLHLENAAEFVAGFDRPNIYYQVVEKNGGKKQLLQFVKQQNGESGIVYCLSRKKVDDTAAFLNENGIAAAAYHAGMGMAEREAAQHRFTHEDGLVIVATVAFGMGIDKPDVRFVAHLDMPQSIEHFYQESGRAGRDGLPAESWLCYGLNDYALLRERIQTGSSGEFQKQIELQKLDAMFAVCETAECRRAALLRHFGETIPPCGHCDNCLHPPERADATENVRKLLSCVYRAGQRFPAGYIANLLRGKADQWIRDNRHEQLTTYGIGADLSDKEWRAVIRQCIGLGYLETDAQHYHALRLTEAAVPVLKGVQTVLLRPLKRAKAAERSPKETWLRTEREERLWQALRQWRQARARAEEVPAYVICGDKTLRELVEQQPQTPAALHDIYGLGEAKIQKFGAELLAVCQNAAAEGQRPSENPQNPFSDGLQAPAEPPAELHPRRAELETALRQWRRQRAEAENTAEHTVCPDDSLADLAAFPPAQAGDLAAVYGLGDTRIAKYGADILALCQPFSDGLTPAAQHRRALVRRLGAWCAATAEAENEELFRILSKNTLRALAAKQPQTAAELAAIYGITEDKAARYGAALLEICRQEAV*	common_virus_hmm	common_virus	C3	22987	36635	59622	GCA_001063965.1|JVQC01000046.1@region_36636_59622@tool_cenote_CDS_0003	persistent	direct	high	2348	1.0	GCA_001063965.1_00920
GCA_001063965.1|JVQC01000046.1@region_36636_59622@tool_cenote	cenote	CDS	40904	41341	GCA_001063965.1	JVQC01000046.1	GCA_001063965.1|JVQC01000046.1	GCA_001063965.1_JVQC01000046.1	GCA_001063965.1|JVQC01000046.1	GCA_001063965_1_43	GCA_001063965_1_43@C3	4270	4707	GCA_001063965_1_43_38	GCA_001063965_1_43_38	+	88988	.	3ZH6_A	PROTEIN E	MNAQRALRLSATALAAALILAGCPANVPQAGGDWHNLGEAGNGNLMLALDKNSIRRNGPLVTFRDRKIVVDMKNERFVNVPPYKTAISTWEMHCANKTFRLVSSTLYDDKGKIISDETYTAVDIRPMAVPPNSLTDEQRKIVCAG*	hhsuite_tools	hypothetical_protein	C3	22987	36635	59622	GCA_001063965.1|JVQC01000046.1@region_36636_59622@tool_cenote_CDS_0004	persistent	direct	high	437	0.998	GCA_001063965.1_00921
GCA_001063965.1|JVQC01000046.1@region_36636_59622@tool_cenote	cenote	CDS	41447	41767	GCA_001063965.1	JVQC01000046.1	GCA_001063965.1|JVQC01000046.1	GCA_001063965.1_JVQC01000046.1	GCA_001063965.1|JVQC01000046.1	GCA_001063965_1_43	GCA_001063965_1_43@C3	4813	5133	GCA_001063965_1_43_39	GCA_001063965_1_43_39	+	88988	.	.	hypothetical protein	MTTRPALAALILAAAFAQAETSDELLSAQAAFRQALSEQNSIGSKLTFAEEKLTNARQRKAAAEADIQTYTQQLEQMQQQKAANDTALQQAGERLNAAWQAAHGSR*	.	hypothetical_protein	C3	22987	36635	59622	GCA_001063965.1|JVQC01000046.1@region_36636_59622@tool_cenote_CDS_0005	persistent	direct	high	320	0.997	GCA_001063965.1_00922
GCA_001063965.1|JVQC01000046.1@region_36636_59622@tool_cenote	cenote	CDS	42430	43113	GCA_001063965.1	JVQC01000046.1	GCA_001063965.1|JVQC01000046.1	GCA_001063965.1_JVQC01000046.1	GCA_001063965.1|JVQC01000046.1	GCA_001063965_1_43	GCA_001063965_1_43@C3	5796	6479	GCA_001063965_1_43_40	GCA_001063965_1_43_40	+	88988	.	PRK14118	2,3-diphosphoglycerate-dependent phosphoglycerate mutase. 	MELVFIRHGQSEWNAKNLFTGWRDVNLSAQGVAEAQAAGRKLKENGYAFDLAFTSVLTRAIKTCNIVLEECGQLYVPQIKSWRLNERHYGRLQGMDKQQTAEEYGDEQVRIWRRSYDTLPPLLDADDEFSARKDPRYAHLPQSVIPDGENLKTTLERVLPIWQDRIAPAVLAGKRVLVAAHGNSLRALVKHLEGISDDDIMGVEIPTGQPLVYQLGDKLNVLEKFYL*	mmseqs_cdd	nonviral_gene	C3	22987	36635	59622	GCA_001063965.1|JVQC01000046.1@region_36636_59622@tool_cenote_CDS_0006	persistent	direct	high	683	0.999	GCA_001063965.1_00924
GCA_001063965.1|JVQC01000046.1@region_36636_59622@tool_cenote	cenote	CDS	43267	43515	GCA_001063965.1	JVQC01000046.1	GCA_001063965.1|JVQC01000046.1	GCA_001063965.1_JVQC01000046.1	GCA_001063965.1|JVQC01000046.1	GCA_001063965_1_43	GCA_001063965_1_43@C3	6633	6881	GCA_001063965_1_43_41	GCA_001063965_1_43_41	+	88988	.	.	hypothetical protein	MSSITDYFYFEIIEVEQKGSFIPLAYILKIFKEDLWDKTVKPKCIETLNFPVTNKWDHGATRKRAELCGKSIVADLKKGGAK*	.	hypothetical_protein	C3	22987	36635	59622	GCA_001063965.1|JVQC01000046.1@region_36636_59622@tool_cenote_CDS_0007	cloud	direct	high	248	0.996	GCA_001063965.1_00925
GCA_001063965.1|JVQC01000046.1@region_36636_59622@tool_cenote	cenote	CDS	43512	44414	GCA_001063965.1	JVQC01000046.1	GCA_001063965.1|JVQC01000046.1	GCA_001063965.1_JVQC01000046.1	GCA_001063965.1|JVQC01000046.1	GCA_001063965_1_43	GCA_001063965_1_43@C3	6878	7780	GCA_001063965_1_43_42	GCA_001063965_1_43_42	+	88988	.	PFAM:PF05840.12	Rep-protein	MNRNTARSAQRDLPCLNSNNCIEPDQTGENRQLPSSPYSVFKPENELNEFSTSYRKSTAALEMNVKAFIEAFGLDKVGFLTLTFADDVTDPKEAQRRFHSLRTNFLKRHFPEYVCVYERTKKGRIHFHLLVNTCLNIRRGLNFRQIAAGNYKTANSYLRHLWTLLRENVGKYGFGRTELLPVKTNSKGLSRYVSKYIAKHINSRLPEDKGYRLVRTSIDKKAVWKMANSNFSFVSTGSKEWRRKLKKWVECVEDYLRLYAQNRWGRTVPPIDQDNYNTILASLLSPKWAFKNRETILTME*	rep_hall_hmm	common_virus	C3	22987	36635	59622	GCA_001063965.1|JVQC01000046.1@region_36636_59622@tool_cenote_CDS_0008	cloud	direct	high	902	0.999	GCA_001063965.1_00926
GCA_001063965.1|JVQC01000046.1@region_36636_59622@tool_cenote	cenote	CDS	44420	44683	GCA_001063965.1	JVQC01000046.1	GCA_001063965.1|JVQC01000046.1	GCA_001063965.1_JVQC01000046.1	GCA_001063965.1|JVQC01000046.1	GCA_001063965_1_43	GCA_001063965_1_43@C3	7786	8049	GCA_001063965_1_43_43	GCA_001063965_1_43_43	+	88988	.	.	hypothetical protein	MSENQKQGFYVTATFDRPFAKERKNSDGTYIKVHYIGLLVRSDDGTQLCEVKTKHPERYEQYKRDQVITLRIFPRAFKDNVYYSDEG*	.	hypothetical_protein	C3	22987	36635	59622	GCA_001063965.1|JVQC01000046.1@region_36636_59622@tool_cenote_CDS_0009	cloud	direct	high	263	0.996	GCA_001063965.1_00927
GCA_001063965.1|JVQC01000046.1@region_36636_59622@tool_cenote	cenote	CDS	44772	45002	GCA_001063965.1	JVQC01000046.1	GCA_001063965.1|JVQC01000046.1	GCA_001063965.1_JVQC01000046.1	GCA_001063965.1|JVQC01000046.1	GCA_001063965_1_43	GCA_001063965_1_43@C3	8138	8368	GCA_001063965_1_43_44	GCA_001063965_1_43_44	+	88988	.	CDD:PHA00025	major-coat-protein	MLNKLKSKYYRGLAVATMAAMPVMAFADENNAALEAAKTELASLKTGIAGIGGVVIGIVVAIVAIGIMKQGVRKAG*	hallmark_hmm	common_virus	C3	22987	36635	59622	GCA_001063965.1|JVQC01000046.1@region_36636_59622@tool_cenote_CDS_0010	cloud	direct	high	230	0.996	GCA_001063965.1_00928
GCA_001063965.1|JVQC01000046.1@region_36636_59622@tool_cenote	cenote	CDS	45016	45315	GCA_001063965.1	JVQC01000046.1	GCA_001063965.1|JVQC01000046.1	GCA_001063965.1_JVQC01000046.1	GCA_001063965.1|JVQC01000046.1	GCA_001063965_1_43	GCA_001063965_1_43@C3	8382	8681	GCA_001063965_1_43_45	GCA_001063965_1_43_45	+	88988	.	.	hypothetical protein	MGYQQGRVCYQTEAEAANALMTQVVPTIDKDGVMHHPVFNGRTWEYQGQIVKPTFPECDPLEYTKAGQEFGAMTVAVMASVFAVRAIKSVIETLGTPKE*	.	hypothetical_protein	C3	22987	36635	59622	GCA_001063965.1|JVQC01000046.1@region_36636_59622@tool_cenote_CDS_0011	cloud	direct	high	299	0.997	GCA_001063965.1_00929
GCA_001063965.1|JVQC01000046.1@region_36636_59622@tool_cenote	cenote	CDS	45319	46998	GCA_001063965.1	JVQC01000046.1	GCA_001063965.1|JVQC01000046.1	GCA_001063965.1_JVQC01000046.1	GCA_001063965.1|JVQC01000046.1	GCA_001063965_1_43	GCA_001063965_1_43@C3	8685	10364	GCA_001063965_1_43_46	GCA_001063965_1_43_46	+	88988	.	PFAM:PF05616.12	attachment-protein	MNHAARTTIFTRPLPLLAGLAGLLLVHAQVKADVPTPPPTAPHSAGFPSEQALINRGYDPKTGIWRVEETNIGKPTVKKEGGNITGTQGRNVAVTGVYGEKVNLNTSVSQAANVEKLQVKGAGVLYGGMAAGGAVGSNAAIRAYKDFKEGDYKGGFQNSIEAVLSGLSSLDITGLGSGLVNFGNGTGLTDLGPNNPFSAARAQAERDGNLGGAVAAAQAEKIAREAAAEAEAAEKMKQQQKEHYPVQIIIEEYGPEGSIYSNKIGYTHIKDLSGMSNLEGRKGKSGKFYAPNMEFAGNYFDYTLKDEKSVGARASWTTTYTPTTPEQLKKSLPLTESEIADILRRMLESNQTNHAELMRQLSMMGNIVPQATTNITYNQTTAKSAPYTPQGSGQAQQTQVTINPDGSITTNIIPRPDLKPDSSQAPTREQITPSAPSENQQQNPNGQQQNPNGQSQNQQQQDKDFCDKHPDSLMCSDMGNADYEDVAIPHQDIPLDFSPADLFATDGVCPEPRYVDLGAFGVHEFGYDGICGLARKLRPLFILSTILGCAYFIYASLDK*	common_virus_hmm	common_virus	C3	22987	36635	59622	GCA_001063965.1|JVQC01000046.1@region_36636_59622@tool_cenote_CDS_0012	cloud	direct	high	1679	0.999	GCA_001063965.1_00930
GCA_001063965.1|JVQC01000046.1@region_36636_59622@tool_cenote	cenote	CDS	47026	47313	GCA_001063965.1	JVQC01000046.1	GCA_001063965.1|JVQC01000046.1	GCA_001063965.1_JVQC01000046.1	GCA_001063965.1|JVQC01000046.1	GCA_001063965_1_43	GCA_001063965_1_43@C3	10392	10679	GCA_001063965_1_43_47	GCA_001063965_1_43_47	+	88988	.	PFAM:PF10734.8	Minor-Head-Virion-Protein	MKMNLGTVLTSVLMTVAGRLVAALGVSTVSYIGLNEIQKRIVSAVAANIDSLPKEALQLVYIAGLGVCLNWVIGAFAFVISVKSLSRLSAGITKK*	hallmark_hmm	common_virus	C3	22987	36635	59622	GCA_001063965.1|JVQC01000046.1@region_36636_59622@tool_cenote_CDS_0013	cloud	direct	high	287	0.997	GCA_001063965.1_00931
GCA_001063965.1|JVQC01000046.1@region_36636_59622@tool_cenote	cenote	CDS	47335	48522	GCA_001063965.1	JVQC01000046.1	GCA_001063965.1|JVQC01000046.1	GCA_001063965.1_JVQC01000046.1	GCA_001063965.1|JVQC01000046.1	GCA_001063965_1_43	GCA_001063965_1_43@C3	10701	11888	GCA_001063965_1_43_48	GCA_001063965_1_43_48	+	88988	.	PFAM:PF05707.11	Zonular-occludens-toxin-(Zot)	MLYLFTGVPGSGKTLNVVSMLAKRKEFQNRPLFIDGIPDLKIPHNEIPEGESVKTWPKWAPPGAIIVVDECQRIFRPRPSGSAVPDYVAELETHRHRGLDFLLITQHPRLIDINVRSLIDHHTHISKTNLGVRRKLEWSTGGAKNPEARTDINDALVSIYKLDKSVYGLYKSAEEHTKIKTARSKVFYLIPVFLLLFIYGGWTFYEFWNGYSQPVKTAKPAAKTQPAPVAAPAASPAAGGTAAATAADGTHAAGQYAPEEKQTADKPHISADDFKPAIDGQPHTAPIYDTYNKAVQTMPYPAACIKNADRCTCYTDQGTKIKGFDKALCLEYVEDGLYNPYRRQEAQNQGQAAEKPERQEQKAEVLVMGGKEPVNLMYDGYAESRWSNQGAKVGL*	hallmark_hmm	common_virus	C3	22987	36635	59622	GCA_001063965.1|JVQC01000046.1@region_36636_59622@tool_cenote_CDS_0014	persistent	direct	high	1187	0.999	GCA_001063965.1_00932
GCA_001063965.1|JVQC01000046.1@region_36636_59622@tool_cenote	cenote	CDS	49082	49366	GCA_001063965.1	JVQC01000046.1	GCA_001063965.1|JVQC01000046.1	GCA_001063965.1_JVQC01000046.1	GCA_001063965.1|JVQC01000046.1	GCA_001063965_1_43	GCA_001063965_1_43@C3	12448	12732	GCA_001063965_1_43_49	GCA_001063965_1_43_49	+	88988	.	PFAM:PF01548.16	Transposase	MYLGIDVSKATIDCCLISDGLFFEHKFENRESGFHKLQDWLAANGATDKLRCCCEATGKYYEALADFLAARHTISVQNRPVHARHARLPQRNLP*	common_virus_hmm	common_virus	C3	22987	36635	59622	GCA_001063965.1|JVQC01000046.1@region_36636_59622@tool_cenote_CDS_0015	persistent	direct	high	284	0.996	GCA_001063965.1_00933
GCA_001063965.1|JVQC01000046.1@region_36636_59622@tool_cenote	cenote	CDS	49326	49502	GCA_001063965.1	JVQC01000046.1	GCA_001063965.1|JVQC01000046.1	GCA_001063965.1_JVQC01000046.1	GCA_001063965.1|JVQC01000046.1	GCA_001063965_1_43	GCA_001063965_1_43@C3	12692	12868	GCA_001063965_1_43_50	GCA_001063965_1_43_50	+	88988	.	PFAM:PF01548.16	Transposase	MPAMHAYRSETFRSFVNRLQANGKRPKQIIVALMRKLAVIAYHLIKTGKDFEPKRYTG*	common_virus_hmm	common_virus	C3	22987	36635	59622	GCA_001063965.1|JVQC01000046.1@region_36636_59622@tool_cenote_CDS_0016	persistent	direct	high	176	0.994	GCA_001063965.1_00934
GCA_001063965.1|JVQC01000046.1@region_36636_59622@tool_cenote	cenote	CDS	49944	50591	GCA_001063965.1	JVQC01000046.1	GCA_001063965.1|JVQC01000046.1	GCA_001063965.1_JVQC01000046.1	GCA_001063965.1|JVQC01000046.1	GCA_001063965_1_43	GCA_001063965_1_43@C3	13310	13957	GCA_001063965_1_43_51	GCA_001063965_1_43_51	-	88988	.	COG0790	TPR repeat [Signal transduction mechanisms]. 	MKTKLSAAALLLALCLPPAQADVVFADPSHWKQLHEGETAYLNRDYRRALQILLPLADNGDYTVRSIVQPKLAQIYVLGPEGVKNPAEAARWLHKAAEGGDIGSQYYLGLLYLRGRDRAFDIKPDAAQAAKWFAKAAEQGHADAALTLAAMYEEGADGLPQDIAAAARWYRKAAEMGKPNAAAVLAQMYAQGVGVKRDLREAEKWRRRAEQDGER*	mmseqs_cdd	nonviral_gene	C3	22987	36635	59622	GCA_001063965.1|JVQC01000046.1@region_36636_59622@tool_cenote_CDS_0017	persistent	direct	high	647	0.998	GCA_001063965.1_00935
GCA_001063965.1|JVQC01000046.1@region_36636_59622@tool_cenote	cenote	CDS	50741	51550	GCA_001063965.1	JVQC01000046.1	GCA_001063965.1|JVQC01000046.1	GCA_001063965.1_JVQC01000046.1	GCA_001063965.1|JVQC01000046.1	GCA_001063965_1_43	GCA_001063965_1_43@C3	14107	14916	GCA_001063965_1_43_52	GCA_001063965_1_43_52	+	88988	.	COG0101	tRNA U38,U39,U40 pseudouridine synthase TruA [Translation, ribosomal structure and biogenesis]. 	MTEPPKTRRVLIVAYDGSRFFGWQKQAGGVPTVQAALEEALSGIAGERIAVTAAGRTDTGVHAAAQVVHFDTAAERPGQAWVRGTNSLLPEGVAVLRVHSVPPHFHARFDACGRRYRYVLQSAPVRSPLLAGRAGWTHTPLDPAPMREAAALLVGTHDFSSFRAAECQAKSPVKTLYSVRLSGTARFMALDLHGNAFLHHMVRNIVGALVYVGSGRLSVAGFAELIAAKSRLKAPPTFMPDGLYLTGADYPPEFGLDTPPLPDWLWPQL*	mmseqs_cdd	nonviral_gene	C3	22987	36635	59622	GCA_001063965.1|JVQC01000046.1@region_36636_59622@tool_cenote_CDS_0018	persistent	direct	high	809	0.999	GCA_001063965.1_00936
GCA_001063965.1|JVQC01000046.1@region_36636_59622@tool_cenote	cenote	CDS	51612	52235	GCA_001063965.1	JVQC01000046.1	GCA_001063965.1|JVQC01000046.1	GCA_001063965.1_JVQC01000046.1	GCA_001063965.1|JVQC01000046.1	GCA_001063965_1_43	GCA_001063965_1_43@C3	14978	15601	GCA_001063965_1_43_53	GCA_001063965_1_43_53	+	88988	.	PRK01222	phosphoribosylanthranilate isomerase. 	MPAKIRTKICGITRPEDAAAAARLGADAVGLVFYPQSKRAVTPAQAAPIVAALPPFVSAVALFVNESADNIRAVLRQVPIDTIQFHGDEDDAFCRQFARPYLKAVRVRHAEDIRTASSRFPNARAILFDAYHPQAYGGTGQSFDWTLLARYTGKPWILAGGLTPENAAAAVRISGAAAVDVSGGVESAAGIKDAAKIAAFLRSVEAV*	mmseqs_cdd	nonviral_gene	C3	22987	36635	59622	GCA_001063965.1|JVQC01000046.1@region_36636_59622@tool_cenote_CDS_0019	persistent	direct	high	623	0.998	GCA_001063965.1_00937
GCA_001063965.1|JVQC01000046.1@region_36636_59622@tool_cenote	cenote	CDS	52913	54286	GCA_001063965.1	JVQC01000046.1	GCA_001063965.1|JVQC01000046.1	GCA_001063965.1_JVQC01000046.1	GCA_001063965.1|JVQC01000046.1	GCA_001063965_1_43	GCA_001063965_1_43@C3	16279	17652	GCA_001063965_1_43_54	GCA_001063965_1_43_54	-	88988	.	PDB:1OYW_A	ATP-dependent-DNA-helicase	MNAFSSLGLGAEIVSALADQGYETPTPIQAAAIPKVLAGHDLLAAAQTGTGKTAAFMLPALERLKRYANTSASPAMHPVRMLVLTPTRELADQIDKNVQAYIKNLPLRHTVLFGGVNMDKQTADLRAGCEIVVATVGRLLDHVKQKNINFAKIETVVLDEADRMLDMGFIDDIRAIMRILPRERQTLLFSATFADPIRKLAQDFMNAPETVEVAAQNTANANVEQHVIAVDTFEKRRLLERLIVDLDIKQVIVFCKTKQSVDQVTRDLQRRGLAAQSIHGDKSQQTRLETLNAFKEGGLRVLVATDVAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDENEQKMFEAVCALTGNSVPVERIEGFEPQWWNKAAQPQNAHRPSENGRDGRTCRDARNGKERDTAEPRRRDAPEACGRIEGRRSRNRRGERVKCALVQANYGVK*	common_virus_hmm	common_virus	C3	22987	36635	59622	GCA_001063965.1|JVQC01000046.1@region_36636_59622@tool_cenote_CDS_0020	persistent	direct	high	1373	0.999	GCA_001063965.1_00938
GCA_001063965.1|JVQC01000046.1@region_36636_59622@tool_cenote	cenote	CDS	54680	55168	GCA_001063965.1	JVQC01000046.1	GCA_001063965.1|JVQC01000046.1	GCA_001063965.1_JVQC01000046.1	GCA_001063965.1|JVQC01000046.1	GCA_001063965_1_43	GCA_001063965_1_43@C3	18046	18534	GCA_001063965_1_43_55	GCA_001063965_1_43_55	+	88988	.	PRK09372	ribonuclease E inhibitor RraA. 	MFTDFSTADLIDVAPDTPSCDTQFRSFGRRARFSGRIRTVRCAGDNGLVKELLNSHSEGEVLVVDGGGSLHSALIGDLIATAGAANGWAGAVVYGAVRDSEALNEIDFGIKALGTNPRKSGKSGAGETDAALAFGGVEFVPGHFLYSDADGILVSPNPIRAE*	mmseqs_cdd	nonviral_gene	C3	22987	36635	59622	GCA_001063965.1|JVQC01000046.1@region_36636_59622@tool_cenote_CDS_0021	persistent	direct	high	488	0.998	GCA_001063965.1_00939
GCA_001063965.1|JVQC01000046.1@region_36636_59622@tool_cenote	cenote	CDS	55184	55606	GCA_001063965.1	JVQC01000046.1	GCA_001063965.1|JVQC01000046.1	GCA_001063965.1_JVQC01000046.1	GCA_001063965.1|JVQC01000046.1	GCA_001063965_1_43	GCA_001063965_1_43@C3	18550	18972	GCA_001063965_1_43_56	GCA_001063965_1_43_56	+	88988	.	PRK10738	OsmC family protein. 	MRITSKRLDNLCFVGTTEAGHSVVMEGSAAEGGVKRGPSPMEMLLLGVAGCSSIDVVMIAQKQRQDVTDCQATVTAERAAEAPRVFTEIHIHFKVFGHNLKETAIAKAVELSAEKYCSASIMLGKAAKISHSFELAEAQT*	mmseqs_cdd	nonviral_gene	C3	22987	36635	59622	GCA_001063965.1|JVQC01000046.1@region_36636_59622@tool_cenote_CDS_0022	persistent	direct	high	422	0.998	GCA_001063965.1_00940
GCA_001063965.1|JVQC01000046.1@region_36636_59622@tool_cenote	cenote	CDS	55856	57337	GCA_001063965.1	JVQC01000046.1	GCA_001063965.1|JVQC01000046.1	GCA_001063965.1_JVQC01000046.1	GCA_001063965.1|JVQC01000046.1	GCA_001063965_1_43	GCA_001063965_1_43@C3	19222	20703	GCA_001063965_1_43_57	GCA_001063965_1_43_57	+	88988	.	PRK05632	phosphate acetyltransferase; Reviewed	MANIFIFPVCPHADTAAVAANIAAQLPDAAVFDAAQYAAEGAELAAAGKADDWFDLLIGRAAALGKQNLVIRGITPNDEYLFLSRQNNELAGAFNARVVFAVSSGHATAGRVQMAKASFAGRAVEFGGIIGAPEDVAASAGLAFLGSIEKPQNTAALAAPQSVRLSPAQFRFNMMEAARKAGKRIVLPEGAEPRTVQAAAICHEKGLARCVLLATRQEVEAVAKDLGVSLPESLEILNPAELVEQYVAPMCELRKSKGLTPEDARKQLQDTVVLGTMMMAQNDADGLVSGAVHTTANTIRPALQLIKTAPGASIVSSVFFMLLPGQVLVYGDCAVNPNPTPEQLAEIAIQSAESAQAFGIEPRVAMISYSTGTSGAGPDVDAVAQATAIAKEKRPDLAIDGPLQYDAASVPDVAKSKAPGSPVAGRATVFVFPDLNTGNCTYKAVQRNANVLSVGPMLQGLRKPVNDLSRGALVEDIVYTIALTAIQAAQSAK*	mmseqs_cdd	nonviral_gene	C3	22987	36635	59622	GCA_001063965.1|JVQC01000046.1@region_36636_59622@tool_cenote_CDS_0023	persistent	direct	high	1481	0.999	GCA_001063965.1_00941
GCA_001063965.1|JVQC01000046.1@region_36636_59622@tool_cenote	cenote	CDS	57837	58994	GCA_001063965.1	JVQC01000046.1	GCA_001063965.1|JVQC01000046.1	GCA_001063965.1_JVQC01000046.1	GCA_001063965.1|JVQC01000046.1	GCA_001063965_1_43	GCA_001063965_1_43@C3	21203	22360	GCA_001063965_1_43_58	GCA_001063965_1_43_58	-	88988	.	PDB:1GH6_A	Large-T-antigen	MSNQDYYQTLGVSRSAGDDEIKKAYRKLAMKYHPDRNPGDKAAEEKFKDVQKAYDTLSDKEKRAMYDQIGHAAFEQGAGAGGFGGGFGGFGGAQGFDFSDIFSQMFGGGGGGARQQDYRGADLQYAVEITLEEAARGTRRRITIPTHEECGVCHGSGAKPGTTASTCATCRGSGTVHIRQAIFQMQQTCPACHGSGKEIRDPCVKCRGEGRVKTAKTVEVNIPAGIDDGQRIRLSGEGEPGRNGAPSGDLYVVVHVKAHKIFERNGLDLHCELPVSFTVAALGGEVEVPTLEGKVKLTIPKETQTGRRMRVKGKGIKSLRSSATGDLYCHVLVETPVNLTDRQKELLEEFEKISTGLDRSQTPRKKSFWDKVEDKVNDLKNDLFS*	rep_hall_hmm	common_virus	C3	22987	36635	59622	GCA_001063965.1|JVQC01000046.1@region_36636_59622@tool_cenote_CDS_0024	persistent	direct	high	1157	0.999	GCA_001063965.1_00942
GCA_001063965.1|JVQC01000046.1@region_36636_59622@tool_cenote	cenote	CDS	59127	59621	GCA_001063965.1	JVQC01000046.1	GCA_001063965.1|JVQC01000046.1	GCA_001063965.1_JVQC01000046.1	GCA_001063965.1|JVQC01000046.1	GCA_001063965_1_43	GCA_001063965_1_43@C3	22493	22987	GCA_001063965_1_43_59	GCA_001063965_1_43_59	-	88988	.	COG3030	Protein affecting phage T7 exclusion by the F plasmid, UPF0716 family [General function prediction only]. 	MRYFGIGFLVFGALEILSLIQVGARIGAFGTLALIILSAMAGSFMLRRFGLSGVLLAAAAVRGGGQVSAYQLLWPVRYAVAALLLISPGFFSTLLAVLLMLPFKGGRPVETVGTDGGAASFGGFSQTRPQEDDIIEGDFYTVDGEQQRPSENGAPRRIEDHRGR*	mmseqs_cdd	nonviral_gene	C3	22987	36635	59622	GCA_001063965.1|JVQC01000046.1@region_36636_59622@tool_cenote_CDS_0025	persistent	direct	high	494	0.998	GCA_001063965.1_00943