core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_001067255.1|JUTK01000117.1@region_6837_18293@tool_cenote	cenote	CDS	6836	7891	GCA_001067255.1	JUTK01000117.1	GCA_001067255.1|JUTK01000117.1	GCA_001067255.1_JUTK01000117.1	GCA_001067255.1|JUTK01000117.1	GCA_001067255_1_99	GCA_001067255_1_99@C1	1	1056	GCA_001067255_1_99_7	GCA_001067255_1_99_7	+	165844	.	COG1613	ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism]. 	MNIRTLSFAALTAALALSACSPKTEQSADNASQAAGGKGGEVKLLNVSYDVARDFYKEYNPLFVKEFAAKNGGQTVEVQQSHGGSSKQALAVANGLAADVVTMNQTSDIELLVKKGLVKADWNTRLPDNAVPYTSNVVFLVRKGNPKHIQDWGDLAKDGVQIVLANPKTTGNGRYAFLGAYGYGLKVNNGDEGKTKDFVAALLKNTPVFENGGRAATTTFSQRNIGDVLVTFENEANYVSKKLTQDQFEIVYPSYTILSEAPVAVVDSVVDKKGTRATAEAYLQNLWSEPAQELAANLYLRPRNAEVLAKHKADFPEIETFNPNEKFGTWEEIMKKFFADGRLFDQLSSKK*	mmseqs_cdd	nonviral_gene	C1	11457	6836	18293	GCA_001067255.1|JUTK01000117.1@region_6837_18293@tool_cenote_CDS_0001	persistent	direct	high	1055	0.999	GCA_001067255.1_01894
GCA_001067255.1|JUTK01000117.1@region_6837_18293@tool_cenote	cenote	CDS	7969	9027	GCA_001067255.1	JUTK01000117.1	GCA_001067255.1|JUTK01000117.1	GCA_001067255.1_JUTK01000117.1	GCA_001067255.1|JUTK01000117.1	GCA_001067255_1_99	GCA_001067255_1_99@C1	1134	2192	GCA_001067255_1_99_8	GCA_001067255_1_99_8	+	165844	.	PRK02406	DNA polymerase IV; Validated	MSQRKIIHIDMDAFYASVELREQPHLKGLPVVVAWDGTRSVICAASYEARKFGLHSAMSVATAKRLCPQAVFVPPHFDLYRQVSAQIHAVFRRYTNLIEPLSLDEAYLDVTRNFENIPYASEVAKRIRAEIFEETGLTASAGIAPNKFLSKIASDWHKPNGQFVLPPQKIMAFLESLPLGKIPGVGKVTLKKMNALGMQTAGDLRRFERGELLNHFGRYGYRLYDLARGIDERPVKAERERLQISTEITLPEDLSLAQVSSHLPHLAEDLWRQIERKNVEAKGVTLKLKTHDFRIITRSLTYSSVLPDSTSLLQAAHTLLQRIPPQREDAFRLIGIGVSHLLPKNQQQTLWL*	mmseqs_cdd	nonviral_gene	C1	11457	6836	18293	GCA_001067255.1|JUTK01000117.1@region_6837_18293@tool_cenote_CDS_0002	persistent	direct	high	1058	0.999	GCA_001067255.1_01895
GCA_001067255.1|JUTK01000117.1@region_6837_18293@tool_cenote	cenote	CDS	9165	12821	GCA_001067255.1	JUTK01000117.1	GCA_001067255.1|JUTK01000117.1	GCA_001067255.1_JUTK01000117.1	GCA_001067255.1|JUTK01000117.1	GCA_001067255_1_99	GCA_001067255_1_99@C1	2330	5986	GCA_001067255_1_99_9	GCA_001067255_1_99_9	-	165844	.	PDB:4CEI_A	ATP-dependent-DNA-helicase	MSSALPFDALTLSIDGTNLIEASAGTGKTYGIAALFTRLIVLEKKDIEKILVVTFTKAATAELKTRLRARLDEVLQVLNEIQTLGGEPEHISDGLNKYYEKEKKSPDDFLNRLIPLALGEQDGQESCHRLILRLKAALSQFDNASIYTIHGFCQRVLRDYAFLCGAPLDVELSDDSRERLLIPAQDFWRQKVATDATLAQLVFDRKCTPEEMLAEIKSYTGRPYLKFRRPEGDLKEAQAKLQETWEKIYDQLEDLVKAFWTILPKLNGQTYKRKTFENVFTDLKTNAESSRLPRLSKQTLGKLSLFSIDTLNSKLKKEYKADADAPEIIQLQALANLGRDLQAMENSEEAAFICLQLDLLSYINQSIAEQKKSRRERVFDDLLLDVHQALITNEHGNALAKAAAANWEIALIDEFQDTDPLQYEIFRQIFIEQGCPLFLVGDPKQAIYSFRGADIYAYLQAAQDADRHYTLAVNYRSHAKLINGISALFKQKKHPFVLENIDYSDVSASRAKSRLSPHRPAIQVRWLNTDDQTGKEILRGRAAEYCADEIAFALNEAAEGRLNFKGRALESGDIAVLVRTNNEAAMIAGKLKQRRIQSVLLSRQSVFDSAEADSLSALIGFWLNPRQTDWLRFVLTGVLFGYTAKEIYELNHNEHQLLKWLESSAEAMEKWRKGGIFAAVQQFAALHDIETRLLKGGNERSLTNYYQILELLAEEDSQSRNPAALHKWLNEQIGRARSGHFPSDAQTIRLESDEKLVKIVTMHASKGLQYPLVYCPFAWDTKDNSKENWKILHNENHETELLATSQTSEAELSHLTDEKTAEDLRLLYVALTRAEEQLNIYAAANKYCTPNNPFVYLLEGLPDADRESVNQSYKSATDVVEMLKLNWQRFIKNAPENTEFAFTEEAPPETVYQYSRQQDQAFGAHSIKRRDFDFIRHTSFTGLSRHTKSTDEQHEPLQPAIDPAESADRAMPSENLPSPLSDGLDIHHFPRGTNAGVCLHEMLEKLDFAASAESQSEMIAEVLQRHSFEDKWLPTVSTMLDTCRLTPLIGESLSQIPPTRRLPEMGFTLYMDDFKLDDLRRWFASSEANLPPECVQAAQLLDFHDLQGYLNGFIDMVCQDSDGNVVLIDYKSNHLGNDASAYTQQAMNEAVAHHHYYLQALIYAVAIARYYALRGKPLTKIAIRYLFLRGMDGSERGIWKWDIDTALLSTFVERKTNS*	common_virus_hmm	common_virus	C1	11457	6836	18293	GCA_001067255.1|JUTK01000117.1@region_6837_18293@tool_cenote_CDS_0003	persistent	direct	high	3656	1.0	GCA_001067255.1_01896
GCA_001067255.1|JUTK01000117.1@region_6837_18293@tool_cenote	cenote	CDS	12966	13664	GCA_001067255.1	JUTK01000117.1	GCA_001067255.1|JUTK01000117.1	GCA_001067255.1_JUTK01000117.1	GCA_001067255.1|JUTK01000117.1	GCA_001067255_1_99	GCA_001067255_1_99@C1	6131	6829	GCA_001067255_1_99_10	GCA_001067255_1_99_10	-	165844	.	.	hypothetical protein	MNATNVVINAKDSAEIASNITANNVNITAGNGVIFTESANTASNQGTAVNVGIGAGATINVETGVAVPHVNGSVGVNKTDNASSTATGANVAAGNDIKINANNGDVNLHGTNLVSNNSIEVEGNKVNTSGAISSVNEKNLTVNVNGSYASGKPDGGINAKGKNEANVTNTANTIQSDNVVITTGSPTGLSVNNTTINGNNVAYYYDDSKAPAANRYTYRPRQPSYAKRRLRY*	.	hypothetical_protein	C1	11457	6836	18293	GCA_001067255.1|JUTK01000117.1@region_6837_18293@tool_cenote_CDS_0004	persistent	direct	high	698	0.999	GCA_001067255.1_01897
GCA_001067255.1|JUTK01000117.1@region_6837_18293@tool_cenote	cenote	CDS	14102	14578	GCA_001067255.1	JUTK01000117.1	GCA_001067255.1|JUTK01000117.1	GCA_001067255.1_JUTK01000117.1	GCA_001067255.1|JUTK01000117.1	GCA_001067255_1_99	GCA_001067255_1_99@C1	7267	7743	GCA_001067255_1_99_11	GCA_001067255_1_99_11	-	165844	.	PFAM:PF05708.11	enoyl-CoA-hydratase/carnithine-racemase-like	MKPRYYLALYKGHRGGSGWRVWCARATDWLTRILTRGQYSHAEIAYGPVEGGGYDCISSSVRDGGVRAKTMLLPADKWDLIPLPDSINEHGQLDRLYRNTVSQPYDWFGAVGVVFKTRQRGDKWFCSEWYAAALGLPDCWRWSPNDLATIVSVLKRQA*	phrogs_hmm	hypothetical_protein	C1	11457	6836	18293	GCA_001067255.1|JUTK01000117.1@region_6837_18293@tool_cenote_CDS_0005	cloud	direct	high	476	0.998	GCA_001067255.1_01898
GCA_001067255.1|JUTK01000117.1@region_6837_18293@tool_cenote	cenote	CDS	14581	14907	GCA_001067255.1	JUTK01000117.1	GCA_001067255.1|JUTK01000117.1	GCA_001067255.1_JUTK01000117.1	GCA_001067255.1|JUTK01000117.1	GCA_001067255_1_99	GCA_001067255_1_99@C1	7746	8072	GCA_001067255_1_99_12	GCA_001067255_1_99_12	-	165844	.	PFAM:PF14301.5	tail-protein	MIPGVFVKSVGKWFHTNDESCTQYILLRTMKELPVGLRWKTMENDFVLMTRELLDEMTTQMVLDEQADFANAERHKAAMLKAENPLEYDYSDGWTANYEQPAAELEEA*	phrogs_hmm	hypothetical_protein	C1	11457	6836	18293	GCA_001067255.1|JUTK01000117.1@region_6837_18293@tool_cenote_CDS_0006	shell	direct	high	326	0.997	GCA_001067255.1_01899
GCA_001067255.1|JUTK01000117.1@region_6837_18293@tool_cenote	cenote	CDS	14922	15482	GCA_001067255.1	JUTK01000117.1	GCA_001067255.1|JUTK01000117.1	GCA_001067255.1_JUTK01000117.1	GCA_001067255.1|JUTK01000117.1	GCA_001067255_1_99	GCA_001067255_1_99@C1	8087	8647	GCA_001067255_1_99_13	GCA_001067255_1_99_13	+	165844	.	PDB:8DGC_F	Large-Terminase	MFTRWMFYQRRGYIWQRANHHALICNALERVFNGETKRLIINIPPRYSKTEIAVVNFIAWAMGCVPDCEFIHASYSATLAVNNSVQIRNLVQHEEYRAIFPDLALASESSHHWKTTAGGVMYATGTGARLPALARANTARGSAAQSYWTICTRPTKHEARSDGRMLSTGFKIRWNHGRTAPIHRLS*	hallmark_hmm	common_virus	C1	11457	6836	18293	GCA_001067255.1|JUTK01000117.1@region_6837_18293@tool_cenote_CDS_0007	cloud	direct	high	560	0.998	GCA_001067255.1_01900
GCA_001067255.1|JUTK01000117.1@region_6837_18293@tool_cenote	cenote	CDS	15485	16273	GCA_001067255.1	JUTK01000117.1	GCA_001067255.1|JUTK01000117.1	GCA_001067255.1_JUTK01000117.1	GCA_001067255.1|JUTK01000117.1	GCA_001067255_1_99	GCA_001067255_1_99@C1	8650	9438	GCA_001067255_1_99_14	GCA_001067255_1_99_14	+	165844	.	CDD:COG5362	Large-Terminase	MQRLHENDIAGWLLDGGNGEEWEHLCLPAIQDDGTALWPEKHDIETLRRMEQAAPYVFAGQYLQKSAPPDGGTFKPDNLQFVKVLPAGNIRWVRGWDLASTANDGDYTAGGRLGVTEDGRYIIANIVRGQYGADERDRILKNTAQKDGVKTKISIPQDPGQAGKSQTLYLTRQLAGFSVSASPESGDKVTRAEPFAAQVNIGNVMLLDDGTWDTDALISEMRMFPNGQHDDQIDCLSRAFSELLDTRTGMIDYLRSQVEANK*	hallmark_hmm	common_virus	C1	11457	6836	18293	GCA_001067255.1|JUTK01000117.1@region_6837_18293@tool_cenote_CDS_0008	shell	direct	high	788	0.999	GCA_001067255.1_01901
GCA_001067255.1|JUTK01000117.1@region_6837_18293@tool_cenote	cenote	CDS	16353	17069	GCA_001067255.1	JUTK01000117.1	GCA_001067255.1|JUTK01000117.1	GCA_001067255.1_JUTK01000117.1	GCA_001067255.1|JUTK01000117.1	GCA_001067255_1_99	GCA_001067255_1_99@C1	9518	10234	GCA_001067255_1_99_15	GCA_001067255_1_99_15	-	165844	.	PFAM:PF07592.10	transposase	MSNTISLEELKNLSLPCLPKNLESIRYRAKTQDWPYIEEVGKARGGRLKKYLIASLPAEIRAAIMKRQSDELAEKMPKMLPQVRPGTAMSAQALAEAAKLLNEKQRSVADARCAVVAAVLGIKYEYDCSAKAAVAQFLGLLAEGKLDAVTLGNLEKANDRSRSAKVGERTLDGWISAYLKAENATERLVALAPKTTKAVKPIESYGWLPMFMQFPDGAYRPTGGKTPKRQNQAGGKCN*	phrogs_hmm	hypothetical_protein	C1	11457	6836	18293	GCA_001067255.1|JUTK01000117.1@region_6837_18293@tool_cenote_CDS_0009	shell	direct	high	716	0.999	GCA_001067255.1_01902
GCA_001067255.1|JUTK01000117.1@region_6837_18293@tool_cenote	cenote	CDS	17113	17376	GCA_001067255.1	JUTK01000117.1	GCA_001067255.1|JUTK01000117.1	GCA_001067255.1_JUTK01000117.1	GCA_001067255.1|JUTK01000117.1	GCA_001067255_1_99	GCA_001067255_1_99@C1	10278	10541	GCA_001067255_1_99_16	GCA_001067255_1_99_16	-	165844	.	pfam13693	Winged helix-turn-helix DNA-binding. 	METLKERLMVKIEDAERQKQDWHRAEIVAAVRKRGKTITALSIESGLSANTLKSALQFKYPKGERIISDFLGIPPQEIWPSRYPKQV*	mmseqs_cdd	nonviral_gene	C1	11457	6836	18293	GCA_001067255.1|JUTK01000117.1@region_6837_18293@tool_cenote_CDS_0010	cloud	direct	high	263	0.996	GCA_001067255.1_01903
GCA_001067255.1|JUTK01000117.1@region_6837_18293@tool_cenote	cenote	CDS	17579	18292	GCA_001067255.1	JUTK01000117.1	GCA_001067255.1|JUTK01000117.1	GCA_001067255.1_JUTK01000117.1	GCA_001067255.1|JUTK01000117.1	GCA_001067255_1_99	GCA_001067255_1_99@C1	10744	11457	GCA_001067255_1_99_17	GCA_001067255_1_99_17	+	165844	.	PDB:2FJR_A	Repressor-protein-CI	MTFKSRLQLLWPDSTLEDIASKIDMSYMGLNKVFAKDGLPKAETLIKIQEVTGCDLNWLLTGKGLPFADKSRPENVGAFPVSNTGSGAVDTLGNPVDLREFVFIPRYSVEAAAGHGQAVNDEKPLFCMAFRRYWIENYVTRQTDKLSVIAVKGDSMEGILNHGDNILINHAETEPCDGLYVLRIGNDLFVKNIQRLPGRLLVKSANPLYEPFEIDLTADNTDIAIIGRVEWFGRTVN*	common_virus_hmm	common_virus	C1	11457	6836	18293	GCA_001067255.1|JUTK01000117.1@region_6837_18293@tool_cenote_CDS_0011	shell	direct	high	713	0.999	GCA_001067255.1_01904