core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_001067315.1|JUTD01000087.1@region_147011_159627@tool_cenote	cenote	CDS	147010	147918	GCA_001067315.1	JUTD01000087.1	GCA_001067315.1|JUTD01000087.1	GCA_001067315.1_JUTD01000087.1	GCA_001067315.1|JUTD01000087.1	GCA_001067315_1_74	GCA_001067315_1_74@C10	1	909	GCA_001067315_1_74_149	GCA_001067315_1_74_149	+	166505	.	TIGR01413	Dyp-type peroxidase family. A defined member of this superfamily is Dyp, a dye-decolorizing peroxidase that lacks a typical heme-binding region. A distinct, uncharacterized branch (TIGR01412) of this superfamily has a typical twin-arginine dependent signal sequence characteristic of exported proteins with bound redox cofactors.	MSHPQSAIIPDHAQAGIFIEADISDGRNEDIKSACRLSLEALAKLKTRFPNDILGLTIAFGSRAWQSFGHTDEGSEIKPFPELGNGLAPSTQHDLYIHIQATEQKAAYALAQSVLGAFGDSIRVATEEHGLRLYEDRGLDGFVDGTENPQGDDNVRNVAIIPEGKPDAGGSYVLLQKYLHDLKKWDAVPTAEQEASVGRSKETNDEFSKDVRLPDSHLGRVNVKENGVGLKIVRRSLPFGKISGEHGLMFTSYCNTLHNIEVQLLNMFGDADGKTDLLLKHLSKAVSGAYYYAPSVERLQNL*	mmseqs_cdd	nonviral_gene	C10	12617	147010	159627	GCA_001067315.1|JUTD01000087.1@region_147011_159627@tool_cenote_CDS_0001	persistent	direct	high	908	0.999	GCA_001067315.1_01893
GCA_001067315.1|JUTD01000087.1@region_147011_159627@tool_cenote	cenote	CDS	148170	148883	GCA_001067315.1	JUTD01000087.1	GCA_001067315.1|JUTD01000087.1	GCA_001067315.1_JUTD01000087.1	GCA_001067315.1|JUTD01000087.1	GCA_001067315_1_74	GCA_001067315_1_74@C10	1161	1874	GCA_001067315_1_74_150	GCA_001067315_1_74_150	-	166505	.	PDB:2FJR_A	Repressor-protein-CI	MTFKSRLQLLWPDSTLEDIASKIDMSYMGLNKVFAKDGLPKAETLIKIQEVTGCDLNWLLTGKGLPFADKSRPENVGAFPVSNTGSGAVDTLGNPVDLREFVFIPRYSVEAAAGHGQAVNDEKPLFCMAFRRYWIENYVTRQTDKLSVIAVKGDSMEGILNHGDNILINHAETEPCDGLYVLRIGNDLFVKNIQRLPGRLLVKSANPLYEPFEIDLTADNTDIAIIGRVEWFGRTVN*	common_virus_hmm	common_virus	C10	12617	147010	159627	GCA_001067315.1|JUTD01000087.1@region_147011_159627@tool_cenote_CDS_0002	shell	direct	high	713	0.999	GCA_001067315.1_01894
GCA_001067315.1|JUTD01000087.1@region_147011_159627@tool_cenote	cenote	CDS	149086	149349	GCA_001067315.1	JUTD01000087.1	GCA_001067315.1|JUTD01000087.1	GCA_001067315.1_JUTD01000087.1	GCA_001067315.1|JUTD01000087.1	GCA_001067315_1_74	GCA_001067315_1_74@C10	2077	2340	GCA_001067315_1_74_151	GCA_001067315_1_74_151	+	166505	.	pfam13693	Winged helix-turn-helix DNA-binding. 	METLKERLMVKIEDAERQKQDWHRAEIVAAVRKRGKTITALSIESGLSANTLKSALQFKYPKGERIISDFLGIPPQEIWPSRYPKQV*	mmseqs_cdd	nonviral_gene	C10	12617	147010	159627	GCA_001067315.1|JUTD01000087.1@region_147011_159627@tool_cenote_CDS_0003	cloud	direct	high	263	0.996	GCA_001067315.1_01895
GCA_001067315.1|JUTD01000087.1@region_147011_159627@tool_cenote	cenote	CDS	149393	150109	GCA_001067315.1	JUTD01000087.1	GCA_001067315.1|JUTD01000087.1	GCA_001067315.1_JUTD01000087.1	GCA_001067315.1|JUTD01000087.1	GCA_001067315_1_74	GCA_001067315_1_74@C10	2384	3100	GCA_001067315_1_74_152	GCA_001067315_1_74_152	+	166505	.	PFAM:PF07592.10	transposase	MSNTISLEELKNLSLPCLPKNLESIRYRAKTQDWPYIEEVGKARGGRLKKYLIASLPAEIRAAIMKRQSDELAEKMPKMLPQVRPGTAMSAQALAEAAKLLNEKQRSVADARCAVVAAVLGIKYEYDCSAKAAVAQFLGLLAEGKLDAVTLGNLEKANDRSRSAKVGERTLDGWISAYLKAENATERLVALAPKTTKAVKPIESYGWLPMFMQFPDGAYRPTGGKTPKRQNQAGGKCN*	phrogs_hmm	hypothetical_protein	C10	12617	147010	159627	GCA_001067315.1|JUTD01000087.1@region_147011_159627@tool_cenote_CDS_0004	shell	direct	high	716	0.999	GCA_001067315.1_01896
GCA_001067315.1|JUTD01000087.1@region_147011_159627@tool_cenote	cenote	CDS	150189	150977	GCA_001067315.1	JUTD01000087.1	GCA_001067315.1|JUTD01000087.1	GCA_001067315.1_JUTD01000087.1	GCA_001067315.1|JUTD01000087.1	GCA_001067315_1_74	GCA_001067315_1_74@C10	3180	3968	GCA_001067315_1_74_153	GCA_001067315_1_74_153	-	166505	.	CDD:COG5362	Large-Terminase	MQRLHENDIAGWLLDGGNGEEWEHLCLPAIQDDGTALWPEKHDIETLRRMEQAAPYVFAGQYLQKSAPPDGGTFKPDNLQFVKVLPAGNIRWVRGWDLASTANDGDYTAGGRLGVTEDGRYIIANIVRGQYGADERDRILKNTAQKDGVKTKISIPQDPGQAGKSQTLYLTRQLAGFSVSASPESGDKVTRAEPFAAQVNIGNVMLLDDGTWDTDALISEMRMFPNGQHDDQIDCLSRAFSELLDTRTGMIDYLRSQVEANK*	hallmark_hmm	common_virus	C10	12617	147010	159627	GCA_001067315.1|JUTD01000087.1@region_147011_159627@tool_cenote_CDS_0005	shell	direct	high	788	0.999	GCA_001067315.1_01897
GCA_001067315.1|JUTD01000087.1@region_147011_159627@tool_cenote	cenote	CDS	150980	151540	GCA_001067315.1	JUTD01000087.1	GCA_001067315.1|JUTD01000087.1	GCA_001067315.1_JUTD01000087.1	GCA_001067315.1|JUTD01000087.1	GCA_001067315_1_74	GCA_001067315_1_74@C10	3971	4531	GCA_001067315_1_74_154	GCA_001067315_1_74_154	-	166505	.	PDB:8DGC_F	Large-Terminase	MFTRWMFYQRRGYIWQRANHHALICNALERVFNGETKRLIINIPPRYSKTEIAVVNFIAWAMGCVPDCEFIHASYSATLAVNNSVQIRNLVQHEEYRAIFPDLALASESSHHWKTTAGGVMYATGTGARLPALARANTARGSAAQSYWTICTRPTKHEARSDGRMLSTGFKIRWNHGRTAPIHRLS*	hallmark_hmm	common_virus	C10	12617	147010	159627	GCA_001067315.1|JUTD01000087.1@region_147011_159627@tool_cenote_CDS_0006	cloud	direct	high	560	0.998	GCA_001067315.1_01898
GCA_001067315.1|JUTD01000087.1@region_147011_159627@tool_cenote	cenote	CDS	151555	151881	GCA_001067315.1	JUTD01000087.1	GCA_001067315.1|JUTD01000087.1	GCA_001067315.1_JUTD01000087.1	GCA_001067315.1|JUTD01000087.1	GCA_001067315_1_74	GCA_001067315_1_74@C10	4546	4872	GCA_001067315_1_74_155	GCA_001067315_1_74_155	+	166505	.	PFAM:PF14301.5	tail-protein	MIPGVFVKSVGKWFHTNDESCTQYILLRTMKELPVGLRWKTMENDFVLMTRELLDEMTTQMVLDEQADFANAERHKAAMLKAENPLEYDYSDGWTANYEQPAAELEEA*	phrogs_hmm	hypothetical_protein	C10	12617	147010	159627	GCA_001067315.1|JUTD01000087.1@region_147011_159627@tool_cenote_CDS_0007	shell	direct	high	326	0.997	GCA_001067315.1_01899
GCA_001067315.1|JUTD01000087.1@region_147011_159627@tool_cenote	cenote	CDS	151884	152360	GCA_001067315.1	JUTD01000087.1	GCA_001067315.1|JUTD01000087.1	GCA_001067315.1_JUTD01000087.1	GCA_001067315.1|JUTD01000087.1	GCA_001067315_1_74	GCA_001067315_1_74@C10	4875	5351	GCA_001067315_1_74_156	GCA_001067315_1_74_156	+	166505	.	PFAM:PF05708.11	enoyl-CoA-hydratase/carnithine-racemase-like	MKPRYYLALYKGHRGGSGWRVWCARATDWLTRILTRGQYSHAEIAYGPVEGGGYDCISSSVRDGGVRAKTMLLPADKWDLIPLPDSINEHGQLDRLYRNTVSQPYDWFGAVGVVFKTRQRGDKWFCSEWYAAALGLPDCWRWSPNDLATIVSVLKRQA*	phrogs_hmm	hypothetical_protein	C10	12617	147010	159627	GCA_001067315.1|JUTD01000087.1@region_147011_159627@tool_cenote_CDS_0008	cloud	direct	high	476	0.998	GCA_001067315.1_01900
GCA_001067315.1|JUTD01000087.1@region_147011_159627@tool_cenote	cenote	CDS	152798	153496	GCA_001067315.1	JUTD01000087.1	GCA_001067315.1|JUTD01000087.1	GCA_001067315.1_JUTD01000087.1	GCA_001067315.1|JUTD01000087.1	GCA_001067315_1_74	GCA_001067315_1_74@C10	5789	6487	GCA_001067315_1_74_157	GCA_001067315_1_74_157	+	166505	.	.	hypothetical protein	MNATNVVINAKDSAEIASNITANNVNITAGNGVIFTESANTASNQGTAVNVGIGAGATINVETGVAVPHVNGSVGVNKTDNASSTATGANVAAGNDIKINANNGDVNLHGTNLVSNNSIEVEGNKVNTSGAISSVNEKNLTVNVNGSYASGKPDGGINAKGKNEANVTNTANTIQSDNVVITTGSPTGLSVNNTTINGNNVAYYYDDSKAPAANRYTYRPRQPSYAKRRLRY*	.	hypothetical_protein	C10	12617	147010	159627	GCA_001067315.1|JUTD01000087.1@region_147011_159627@tool_cenote_CDS_0009	persistent	direct	high	698	0.999	GCA_001067315.1_01901
GCA_001067315.1|JUTD01000087.1@region_147011_159627@tool_cenote	cenote	CDS	153641	157297	GCA_001067315.1	JUTD01000087.1	GCA_001067315.1|JUTD01000087.1	GCA_001067315.1_JUTD01000087.1	GCA_001067315.1|JUTD01000087.1	GCA_001067315_1_74	GCA_001067315_1_74@C10	6632	10288	GCA_001067315_1_74_158	GCA_001067315_1_74_158	+	166505	.	PDB:4CEI_A	ATP-dependent-DNA-helicase	MSSALPFDALTLSIDGTNLIEASAGTGKTYGIAALFTRLIVLEKKDIEKILVVTFTKAATAELKTRLRARLDEVLQVLNEIQTLGGEPEHISDGLNKYYEKEKKSPDDFLNRLIPLALGEQDGQESCHRLILRLKAALSQFDNASIYTIHGFCQRVLRDYAFLCGAPLDVELSDDSRERLLIPAQDFWRQKVATDATLAQLVFDRKCTPEEMLAEIKSYTGRPYLKFRRPEGDLKEAQAKLQETWEKIYDQLEDLVKAFWTILPKLNGQTYKRKTFENVFTDLKTNAESSRLPRLSKQTLGKLSLFSIDTLNSKLKKEYKADADAPEIIQLQALANLGRDLQAMENSEEAAFICLQLDLLSYINQSIAEQKKSRRERVFDDLLLDVHQALITNEHGNALAKAAAANWEIALIDEFQDTDPLQYEIFRQIFIEQGCPLFLVGDPKQAIYSFRGADIYAYLQAAQDADRHYTLAVNYRSHAKLINGISALFKQKKHPFVLENIDYSDVSASRAKSRLSPHRPAIQVRWLNTDDQTGKEILRGRAAEYCADEIAFALNEAAEGRLNFKGRALESGDIAVLVRTNNEAAMIAGKLKQRRIQSVLLSRQSVFDSAEADSLSALIGFWLNPRQTDWLRFVLTGVLFGYTAKEIYELNHNEHQLLKWLESSAEAMEKWRKGGIFAAVQQFAALHDIETRLLKGGNERSLTNYYQILELLAEEDSQSRNPAALHKWLNEQIGRARSGHFPSDAQTIRLESDEKLVKIVTMHASKGLQYPLVYCPFAWDTKDNSKENWKILHNENHETELLATSQTSEAELSHLTDEKTAEDLRLLYVALTRAEEQLNIYAAANKYCTPNNPFVYLLEGLPDADRESVNQSYKSATDVVEMLKLNWQRFIKNAPENTEFAFTEEAPPETVYQYSRQQDQAFGAHSIKRRDFDFIRHTSFTGLSRHTKSTDEQHEPLQPAIDPAESADRAMPSENLPSPLSDGLDIHHFPRGTNAGVCLHEMLEKLDFAASAESQSEMIAEVLQRHSFEDKWLPTVSTMLDTCRLTPLIGESLSQIPPTRRLPEMGFTLYMDDFKLDDLRRWFASSEANLPPECVQAAQLLDFHDLQGYLNGFIDMVCQDSDGNVVLIDYKSNHLGNDASAYTQQAMNEAVAHHHYYLQALIYAVAIARYYALRGKPLTKIAIRYLFLRGMDGSERGIWKWDIDTALLSTFVERKTNS*	common_virus_hmm	common_virus	C10	12617	147010	159627	GCA_001067315.1|JUTD01000087.1@region_147011_159627@tool_cenote_CDS_0010	persistent	direct	high	3656	1.0	GCA_001067315.1_01902
GCA_001067315.1|JUTD01000087.1@region_147011_159627@tool_cenote	cenote	CDS	157435	158493	GCA_001067315.1	JUTD01000087.1	GCA_001067315.1|JUTD01000087.1	GCA_001067315.1_JUTD01000087.1	GCA_001067315.1|JUTD01000087.1	GCA_001067315_1_74	GCA_001067315_1_74@C10	10426	11484	GCA_001067315_1_74_159	GCA_001067315_1_74_159	-	166505	.	PRK02406	DNA polymerase IV; Validated	MSQRKIIHIDMDAFYASVELREQPHLKGLPVVVAWDGTRSVICAASYEARKFGLHSAMSVATAKRLCPQAVFVPPHFDLYRQVSAQIHAVFRRYTNLIEPLSLDEAYLDVTRNFENIPYASEVAKRIRAEIFEETGLTASAGIAPNKFLSKIASDWHKPNGQFVLPPQKIMAFLESLPLGKIPGVGKVTLKKMNALGMQTAGDLRRFERGELLNHFGRYGYRLYDLARGIDERPVKAERERLQISTEITLPEDLSLAQVSSHLPHLAEDLWRQIERKNVEAKGVTLKLKTHDFRIITRSLTYSSVLPDSTSLLQAAHTLLQRIPPQREDAFRLIGIGVSHLLPKNQQQTLWL*	mmseqs_cdd	nonviral_gene	C10	12617	147010	159627	GCA_001067315.1|JUTD01000087.1@region_147011_159627@tool_cenote_CDS_0011	persistent	direct	high	1058	0.999	GCA_001067315.1_01903
GCA_001067315.1|JUTD01000087.1@region_147011_159627@tool_cenote	cenote	CDS	158571	159626	GCA_001067315.1	JUTD01000087.1	GCA_001067315.1|JUTD01000087.1	GCA_001067315.1_JUTD01000087.1	GCA_001067315.1|JUTD01000087.1	GCA_001067315_1_74	GCA_001067315_1_74@C10	11562	12617	GCA_001067315_1_74_160	GCA_001067315_1_74_160	-	166505	.	COG1613	ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism]. 	MNIRTLSFAALTAALALSACSPKTEQSADNASQAAGGKGGEVKLLNVSYDVARDFYKEYNPLFVKEFAAKNGGQTVEVQQSHGGSSKQALAVANGLAADVVTMNQTSDIELLVKKGLVKADWNTRLPDNAVPYTSNVVFLVRKGNPKHIQDWGDLAKDGVQIVLANPKTTGNGRYAFLGAYGYGLKVNNGDEGKTKDFVAALLKNTPVFENGGRAATTTFSQRNIGDVLVTFENEANYVSKKLTQDQFEIVYPSYTILSEAPVAVVDSVVDKKGTRATAEAYLQNLWSEPAQELAANLYLRPRNAEVLAKHKADFPEIETFNPNEKFGTWEEIMKKFFADGRLFDQLSSKK*	mmseqs_cdd	nonviral_gene	C10	12617	147010	159627	GCA_001067315.1|JUTD01000087.1@region_147011_159627@tool_cenote_CDS_0012	persistent	direct	high	1055	0.999	GCA_001067315.1_01904