core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote	cenote	CDS	1	2142	GCA_001071295.1	JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295.1_JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295_1_1	GCA_001071295_1_1@C0	2	2143	GCA_001071295_1_1_1	GCA_001071295_1_1_1	-	19591	.	Uniprot:T2PM72_GARVA	tail-tape-measure-protein-	MADGKIVIDVQVNGKKLSELANDLKRLETEARRSGQGVKSAGDGIQATGDKALRAGQGFKRAGDRMAEGAKLSETSSNGFRRAGEKIKESSEVASNSGNGFKRAGEKIKESSELAGRSGSGFKQAGEKVKESSDLAQRSGDGFKQASNKIKSASNEASSGGEGFKQAGHKVKASGEEAKGGGAGFKKAGEDAKAGGDKAGQGAKGFEKIKDAIKNFSVGAVAFKAVSSAMNLVSQSMDKAIDRFDTLQRFPKVMKSLGHSSKDVAASTKLLAEGIEGLPTSLDTVVATTQKLTSMTGNLKQSTKLTIALNNAFLASGASTEEASRGLTQYTQMLSSGKVDLQSWKTLQETMSYALQKTAESFGYAGASAQNDLYKALQDGKITFSDFSKRLVELNKGVNGFAEMAKKNSEGIKTSFNNIILAVAKGIANIITEFDNLSKAVTGKSIAKHLDSIKDAINNTFNIIIGVIRGATPVVKSLVSVLGFLKPVLDPLISVFAGVVGAVLLFKGAMLGLSIIKGIGSLIGTLITSLVSLTSTSLIAQGATTGLAGALASLSSGGVFLVVGAIAGLVSWLTQESEEVKKAKAENEEFKRSIDDLHDSVSKGNESYKDRRNEIKATAEDNERLVRKIDELNAVENKTAAQKKELASAAEILNSRIDGLNLVYDKATGTINMTTDAIRKQIEISKQSAEAEAAQQRMVEIAKKRLEIEDKEAE	hallmark_hmm	common_virus	C0	19592.0	0	19592	GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote_CDS_0001	cloud	ambiguous	low	690	0.322	GCA_001071295.1_00007
GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote	cenote	CDS	2142	2711	GCA_001071295.1	JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295.1_JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295_1_1	GCA_001071295_1_1@C0	2143	2712	GCA_001071295_1_1_2	GCA_001071295_1_1_2	-	19591	.	pfam06854	Bacteriophage Gp15 protein. This family consists of bacteriophage Gp15 proteins and related bacterial sequences. The function of this family is unknown	MKLNEPIQNSFELNGRTYEVDCSFDLVLDVFEMFDNGVMNNLEKMRTAVLMMTDEALDNPEDIVAVWEYIDEHFLKTKKERVVYDRHGNPMPIAKDEEDDTRLIDFEVDAQEIYASFVQAYNINLFEAQGRLTWPEFIALLNGMPEGTAVSRLVEIRSWKPSKHDSSEYKSKMRRLQNKYRLDGKEGDE*	mmseqs_cdd	common_virus	C0	19592.0	0	19592	GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote_CDS_0002	shell	direct	high	569	0.998	GCA_001071295.1_00008
GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote	cenote	CDS	2727	3203	GCA_001071295.1	JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295.1_JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295_1_1	GCA_001071295_1_1@C0	2728	3204	GCA_001071295_1_1_3	GCA_001071295_1_1_3	-	19591	.	PF10666.9	Phage tail assembly chaperone protein Gp14 ()A118	MSISIELKRNHIPIKIGEIELQFDTSLENISRLATLQEDITERFNKYQLELIDRSNNGEFDDLKEGVINKRVIDEAFEMQKKMTEIKYDVLFGDGTFAKLYERYPDLDALDHAFDEVDTLLGAELDRMGQERAKASGAVAESFVKKAKAKKTKKTSKK*	hhsuite_tools	hypothetical_protein	C0	19592.0	0	19592	GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote_CDS_0003	shell	direct	high	476	0.998	GCA_001071295.1_00009
GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote	cenote	CDS	3266	3718	GCA_001071295.1	JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295.1_JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295_1_1	GCA_001071295_1_1@C0	3267	3719	GCA_001071295_1_1_4	GCA_001071295_1_1_4	-	19591	.	PFAM:PF08813.10	tail-tube-protein	MARQKNALRGHFIAPVTDPKTEPDKTAYKELAKWIEDVDDDTDEATTSVAYYDGDGTEETTVTSVKGSYTFKGTYDKEDEAMALIAGLKYKLGNDRLVWHKVVDSDGKNQHVGIATVSAIKAGSGAAANYEEFSCKISYNSLPKTTAVVG*	hallmark_hmm	common_virus	C0	19592.0	0	19592	GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote_CDS_0004	shell	direct	high	452	0.998	GCA_001071295.1_00010
GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote	cenote	CDS	3722	4132	GCA_001071295.1	JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295.1_JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295_1_1	GCA_001071295_1_1@C0	3723	4133	GCA_001071295_1_1_5	GCA_001071295_1_1_5	-	19591	.	PFAM:PF12691.6	Minor-capsid-protein	MKSNNDFNVVLRDFINTLGLPLACELDFLSELDSLVLYPLPGGKVERVYMDGSRDVTLIFEIAVKVKNQVTASECLWEINKALSEFDLVLPSQNNSYIFNNLTTTQPSLNERDEQGFYIYLQDITANLTILNNKGV*	hallmark_hmm	common_virus	C0	19592.0	0	19592	GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote_CDS_0005	cloud	direct	high	410	0.998	GCA_001071295.1_00011
GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote	cenote	CDS	4129	4491	GCA_001071295.1	JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295.1_JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295_1_1	GCA_001071295_1_1@C0	4130	4492	GCA_001071295_1_1_6	GCA_001071295_1_1_6	-	19591	.	PFAM:PF11114.7	Minor-capsid-protein	MGINVTIDLSGATKKVSQASERKAQLEIANQALLDMEPYVPLLHGPLRSSGHVAGNGSQIIYNTPYARAQFYGGAYNKYRSFSFGKYTTPGTGKRWDLKASANHGNKWAEVGLKAMGFNK*	hallmark_hmm	common_virus	C0	19592.0	0	19592	GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote_CDS_0006	cloud	direct	high	362	0.997	GCA_001071295.1_00012
GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote	cenote	CDS	4491	4850	GCA_001071295.1	JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295.1_JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295_1_1	GCA_001071295_1_1@C0	4492	4851	GCA_001071295_1_1_7	GCA_001071295_1_1_7	-	19591	.	PFAM:PF10665.8	Minor-capsid-protein	MVVIDKRTLVDSVTISKPTGKKDGWGKEEFSYPILLSPVRFDRNFDGPGSVNNPSGQKNPSFRAPGVIFVYPRYCNVELDSSFRNSIVKDGDDEYIVNKIVPVYEPFNRKVFCYEIEVM*	hallmark_hmm	common_virus	C0	19592.0	0	19592	GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote_CDS_0007	cloud	direct	high	359	0.997	GCA_001071295.1_00013
GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote	cenote	CDS	4837	5235	GCA_001071295.1	JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295.1_JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295_1_1	GCA_001071295_1_1@C0	4838	5236	GCA_001071295_1_1_8	GCA_001071295_1_1_8	-	19591	.	CDD:cd08053	Head-Tail-Connector-Protein	MAYLTHEEYRELGFDSTSEFESLLKRAELAIDLFIRHYYDFHDFDTDHKTRKKAVKLATAYQIQYLDSTGILTAEDKQTISSTTLGRTSVSYSSNNGSRASETASGYNLSLDAFNTLKSAGFLYSGVDYGRY*	hallmark_hmm	common_virus	C0	19592.0	0	19592	GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote_CDS_0008	cloud	direct	high	398	0.997	GCA_001071295.1_00014
GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote	cenote	CDS	5244	5438	GCA_001071295.1	JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295.1_JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295_1_1	GCA_001071295_1_1@C0	5245	5439	GCA_001071295_1_1_9	GCA_001071295_1_1_9	-	19591	.	.	hypothetical protein	MAKYKATCNFLIESTDQNFDEGTVYELTTAEAEEINQKTSFAFGEEWLEIVSDSGPVAQEVISE*	.	hypothetical_protein	C0	19592.0	0	19592	GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote_CDS_0009	cloud	direct	high	194	0.995	GCA_001071295.1_00015
GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote	cenote	CDS	5442	5588	GCA_001071295.1	JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295.1_JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295_1_1	GCA_001071295_1_1@C0	5443	5589	GCA_001071295_1_1_10	GCA_001071295_1_1_10	-	19591	.	.	hypothetical protein	MAEETKTTKTEAVTEQAVTVLVKDDVTFTITDPNLVSAFLTSGYEIKE*	.	hypothetical_protein	C0	19592.0	0	19592	GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote_CDS_0010	cloud	direct	high	146	0.993	GCA_001071295.1_00016
GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote	cenote	CDS	5599	6423	GCA_001071295.1	JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295.1_JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295_1_1	GCA_001071295_1_1@C0	5600	6424	GCA_001071295_1_1_11	GCA_001071295_1_1_11	-	19591	.	PDB:2XD8_E	Major-Capsid-protein	MTINYAAKFDAKVDERFAKEALSTGIVNQDFDFTGVDTVKVYSIPTTAMNDYALTGNTRYGTAAELENNAQTLTLTKDRSFTFTIDKRSVQDTNGTMEAGKALARQLSEVVIPEVDKYRFGKVVAGADTDHVKTGAVTKNNAYEAVLDGQVKLTDALVPEEGRKLHVSPEFYKLIKLDPSFVKNSDLGQEVAFKGQVGAIDGLPVILTPTSRLPENVAFVIAHPIATTSPVKLEDYKIHDNPPGINGYLVEGRIRYDAFVLDSKKKAIYVHKTA*	hallmark_hmm	common_virus	C0	19592.0	0	19592	GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote_CDS_0011	cloud	direct	high	824	0.999	GCA_001071295.1_00017
GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote	cenote	CDS	6450	7019	GCA_001071295.1	JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295.1_JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295_1_1	GCA_001071295_1_1@C0	6451	7020	GCA_001071295_1_1_12	GCA_001071295_1_1_12	-	19591	.	PFAM:PF06810.10	minor-structural-protein	MSLKREMLVDAGIEDKDTIERIMAAYGSAIKEAKSEVQAENDSLKTQLEQRDQAIKDLQAKEGASEEAKKQLENLQAQFESYKTDSEANLAQVKKTNAVALALKDVGAHNSEDLMKFIDLDKIELTEDGKPKLEETINGLKESSPYLFVTKEEPQEPQPKFALGGNPSAGGDSDLSPEEQALFAGFDSI*	hallmark_hmm	common_virus	C0	19592.0	0	19592	GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote_CDS_0012	cloud	direct	high	569	0.998	GCA_001071295.1_00018
GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote	cenote	CDS	7183	8343	GCA_001071295.1	JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295.1_JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295_1_1	GCA_001071295_1_1@C0	7184	8344	GCA_001071295_1_1_13	GCA_001071295_1_1_13	-	19591	.	PFAM:PF06152.10	minor-capsid-protein	MARNKYPVLFNEEQLELRASQVGDIYHQMARDLFDEVIDRLLERGAESLDDNPYIWQLERMSQMHMLNEQNLDTIARYSKIGREQLRKVIEDEGFKIYQTTKEQLIDDLGGGDFGNSKHAQELLAGYFEQSHGDISNLINTTLPGIVTDVYRQMVQEVVARQVVGLVTHDKAVSQTVMKWQEIGFKGFIDRGGHYWKVDNYARTVIKTTVMRSYREMRTMPADELGVDTFYYSKKATAREACAPLQHRIVTYGPAREEHGISILSLADHGLGTPGGCLGINCGHMLTPFVPGINELPELGPDVKNITQEEAIKNANAQSKQRAYERAIRKSKEKLHVAEKLGDQELISKFKTKIRDQQATLRDYIADKPFLHRDYSRERYFEPNKE*	hallmark_hmm	common_virus	C0	19592.0	0	19592	GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote_CDS_0013	cloud	direct	high	1160	0.999	GCA_001071295.1_00019
GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote	cenote	CDS	8348	9805	GCA_001071295.1	JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295.1_JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295_1_1	GCA_001071295_1_1@C0	8349	9806	GCA_001071295_1_1_14	GCA_001071295_1_1_14	-	19591	.	PFAM:PF05133.13	Portal-protein	MTSQSLGNITEHPKIAINKDEYDRIQKNLKYYQSKWDPIRYRNSNRVDKQRARNHLPIARTACKKIASLVFNEQAEISVANGTTNEFIQTVLLNDRFNKNFERYLESCLALGGLAMRPYVDDDKIKISFVQAPVFYPLQSNTQDVSSAAIINKSQKTVGKETIYYTLVELHEWTKDKKYTITNELYRSSERERVGDRVPLSEIYEDLEEEVTLDGLTRPLFTYLKPPGMNNKDINSPLGLSIFDNAKSTIDFINTTYDEFKWEVRMGQRRVLVPDQTVRIGFDHHGDTDLVTREFDPEQNVYEQIDGGKDTPINITDLTTPIRSDDYIKAINEGLALFEMQVGVSPGMFTFDGKSMKTATEVVSENSDTYQLRNSIVSLVDQSIKELVISICEIGKLYGLYSGPIPEMDDITVNLDDGVFVDKNNELDYYAKALLSGLVSKQYAISKALGLSDQEAKQMLADIKKETAESMELERSTSEVDIYGE*	hallmark_hmm	common_virus	C0	19592.0	0	19592	GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote_CDS_0014	cloud	direct	high	1457	0.999	GCA_001071295.1_00020
GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote	cenote	CDS	9870	11219	GCA_001071295.1	JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295.1_JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295_1_1	GCA_001071295_1_1@C0	9871	11220	GCA_001071295_1_1_15	GCA_001071295_1_1_15	-	19591	.	PDB:5OEA_B	Large-Terminase	MSQSSSSTISRTTKPTIKLSEEINSKFYKVWRSAKPYNVLKGGRNSFKSSVIALLLVFKMIRAITLGQCVEIIIVRKVGNTIFDSVYKKIIWALDKFGMANQFKRTKSPYKIVHRRTGSTFHFYGQDDFQKLKSNEVGKVIAVWYEEAAEFADSEEFDQSNSTFMRQKHPDYPFVQFFWSYNPPRNPYNWINEWVDSLRTADKYLIHESSYLDDELGFVTEQMLDEIERIKTNDYDYYRYLYLGEPVGLGTNVYNMDLFKRADKIPDGERVIGQLFAADTGHQQSATTCLHAVVTNRSNLYLVDNYYYSPAGKVKKKAPSVLSKELHDFVIKQTQKYPNVPVIEMTIDSAEGALRNQYLEDFGIRWHPVAKKKKIIMTEYVQSLLANGRFYYFPTENNLKYFIEEHKRYQWDEKTVKDDDPKVIKEDDHTCDAFQYMIVDNAQLLRLKA*	hallmark_hmm	common_virus	C0	19592.0	0	19592	GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote_CDS_0015	shell	direct	high	1349	0.999	GCA_001071295.1_00021
GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote	cenote	CDS	11179	11625	GCA_001071295.1	JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295.1_JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295_1_1	GCA_001071295_1_1@C0	11180	11626	GCA_001071295_1_1_16	GCA_001071295_1_1_16	-	19591	.	.	hypothetical protein	MANEENLIPFNERTEKEQREIQRKGGIASGKTRKRKANMKKTLEALLVSKVSNPQLSRVLQDMGFEDDYESALLLVAMQKALKGSSRHMELISKIVNSEGAKDTLDKKEQKARIKALELENKRKAQALDEAGGGADESILIIDDIPND*	.	hypothetical_protein	C0	19592.0	0	19592	GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote_CDS_0016	cloud	direct	high	446	0.998	GCA_001071295.1_00022
GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote	cenote	CDS	11654	12898	GCA_001071295.1	JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295.1_JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295_1_1	GCA_001071295_1_1@C0	11655	12899	GCA_001071295_1_1_17	GCA_001071295_1_1_17	-	19591	.	PDB:5HFJ_C	Adenine-specific-DNA-methyltransferase	MKIEKINISEITEYENNAKLHPREQIEQIKKSIQEFGNNDPIAIDKNNVIIEGHGRYKALQELGYDEVEVIRLSHMDDEQKRAYILAHNKLTMNSGFDIELLNSELESIVNIDMEDFGFDYYEPESEVEEDDFEVEETKEPIAKLGDIYQLGRHRLMCGDSTDPEQLAKLVDGQQIDLIVTDPPYNVAYEGGTEEALTIMNDSMDNESFRKFLRDAFFAADTVLREGGAFYIWHADSEGYNFRGACSDIGWTVRQCLIWNKNTLVLGRQDYQWKHEPCLYGWKEGAAHYFVNDRSLTTIIEDVEDLNKMTKAELVEYIERMQANSPTTIINENKPTRNGLHPTMKPLKLIERLVRNSSKKGWNVLDSFNGSGSTMIVCEDLGRTYFGMELDPRYVDATIQRWEEHTGQTAVKLN*	common_virus_hmm	common_virus	C0	19592.0	0	19592	GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote_CDS_0017	cloud	direct	high	1244	0.999	GCA_001071295.1_00023
GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote	cenote	CDS	13237	13671	GCA_001071295.1	JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295.1_JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295_1_1	GCA_001071295_1_1@C0	13238	13672	GCA_001071295_1_1_18	GCA_001071295_1_1_18	-	19591	.	TIGR01637	phage transcriptional regulator, ArpU family. This model represents a family of phage proteins, including ArpU, called a putative autolysin regulatory protein. ArpU was described as a regulator of cellular muramidase-2 of Enterococcus hirae but appears to have been cloned from a prophage. This family appears related to the RinA family of bacteriophage transcriptional activators and to some sporulation-specific sigma factors. We propose that this is a phage transcriptional activator family. [Mobile and extrachromosomal element functions, Prophage functions, Regulatory functions, DNA interactions]	MLFGEVLKNKTKENADNTLKNYRVLLRIAGEEYSPKVTATYSLEPKSAPSSPSRQTEQMVIRRVSAQQELELMASAINRLSDLNLSQILIERYCRVRFRQDKAIYPSLGYSESEYYRLLDRALLEFAEAYKAGELLEYRFLGDN*	mmseqs_cdd	common_virus	C0	19592.0	0	19592	GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote_CDS_0018	cloud	direct	high	434	0.998	GCA_001071295.1_00025
GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote	cenote	CDS	13672	14055	GCA_001071295.1	JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295.1_JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295_1_1	GCA_001071295_1_1@C0	13673	14056	GCA_001071295_1_1_19	GCA_001071295_1_1_19	-	19591	.	.	hypothetical protein	MDLKKEFFQEADKAIAEFDSIYDFFKVAKSHNAYQDGARYEKYKKQNRMPSSAIVAKFVGFVETDLLYECMKESLDKVGPGRSSEDLVERFYRDNHNYKRNEERKRERRLRRKLEALDLISRMEGWD*	.	hypothetical_protein	C0	19592.0	0	19592	GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote_CDS_0019	cloud	direct	high	383	0.997	GCA_001071295.1_00026
GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote	cenote	CDS	14006	14260	GCA_001071295.1	JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295.1_JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295_1_1	GCA_001071295_1_1@C0	14007	14261	GCA_001071295_1_1_20	GCA_001071295_1_1_20	-	19591	.	.	hypothetical protein	MIRAIRFENESRLGDPRSPAEKLEIFINKTSCEVLNVVVTSTTKFENSSYEKRSWADEILLIYRRREKDGLEERVLPGSRQGDS*	.	hypothetical_protein	C0	19592.0	0	19592	GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote_CDS_0020	cloud	ambiguous	low	51	0.2	GCA_001071295.1_00026
GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote	cenote	CDS	14262	14537	GCA_001071295.1	JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295.1_JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295_1_1	GCA_001071295_1_1@C0	14263	14538	GCA_001071295_1_1_21	GCA_001071295_1_1_21	-	19591	.	PFAM:PF10828.7	Rz-like-spanin	MTNNAKLVCANIAFVFFILFVVCINLNARVRVLETSNSDLQRTIQTQKDELEKIEEKNTMQDVIINKLNNDYNSRMAQELQEIADMNGVGG*	phrogs_hmm	hypothetical_protein	C0	19592.0	0	19592	GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote_CDS_0021	cloud	direct	high	275	0.996	GCA_001071295.1_00027
GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote	cenote	CDS	14534	14776	GCA_001071295.1	JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295.1_JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295_1_1	GCA_001071295_1_1@C0	14535	14777	GCA_001071295_1_1_22	GCA_001071295_1_1_22	-	19591	.	.	hypothetical protein	MKFLMLGLEKPEKFFTKFIVNTSKIVAVTDYALFGERCLKLVLDDGGDRCCTHILTGNGDYARIGSIGQFYKDLISEDER*	.	hypothetical_protein	C0	19592.0	0	19592	GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote_CDS_0022	cloud	direct	high	242	0.996	GCA_001071295.1_00028
GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote	cenote	CDS	14877	15164	GCA_001071295.1	JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295.1_JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295_1_1	GCA_001071295_1_1@C0	14878	15165	GCA_001071295_1_1_23	GCA_001071295_1_1_23	-	19591	.	.	hypothetical protein	MSLNKTRKRLIRKYRGYYNGRLLGLKIKTADDKKWTILSPTVEDFDPDSMVMEAGVIDASVLSGNGITLENKEITISFGFSKKGNRKLREALRGY*	.	hypothetical_protein	C0	19592.0	0	19592	GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote_CDS_0023	cloud	direct	high	287	0.997	GCA_001071295.1_00029
GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote	cenote	CDS	15155	15295	GCA_001071295.1	JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295.1_JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295_1_1	GCA_001071295_1_1@C0	15156	15296	GCA_001071295_1_1_24	GCA_001071295_1_1_24	-	19591	.	.	hypothetical protein	MTRPNRYPYTKSQWEEETTLVCFGDDTSFKLRVERNRITKESRQCH*	.	hypothetical_protein	C0	19592.0	0	19592	GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote_CDS_0024	shell	direct	high	140	0.993	GCA_001071295.1_00030
GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote	cenote	CDS	15298	15636	GCA_001071295.1	JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295.1_JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295_1_1	GCA_001071295_1_1@C0	15299	15637	GCA_001071295_1_1_25	GCA_001071295_1_1_25	-	19591	.	.	hypothetical protein	MSTNLLDETVEFLEKYGKTLDDVLYIQGDDFEITKKNFETVARDTEYYSGYGAQRVAKDLVLVGEDWWIERYEYDGAEWWDFKSIPIRKRYMKNITNLGKGMWDTLKEMNEE*	.	hypothetical_protein	C0	19592.0	0	19592	GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote_CDS_0025	shell	direct	high	338	0.997	GCA_001071295.1_00031
GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote	cenote	CDS	15633	16142	GCA_001071295.1	JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295.1_JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295_1_1	GCA_001071295_1_1@C0	15634	16143	GCA_001071295_1_1_26	GCA_001071295_1_1_26	-	19591	.	pfam07852	Protein of unknown function (DUF1642). The sequences making up this family are derived from various hypothetical phage and prophage proteins. The region in question is approximately 140 amino acids long.	MNKQELIKHFEEMEYVSIVQMGKKAFIDMIEQLDEPQKVTIPQFVADWYEEHKSDLDYELWDYVSDWEDQKPSEFKEGFNKSDKAFQTLVNMHQFGYTIEKEKRYLVKMKGLREDTSYLNYDSIDAEWYFADAENGPAVGTHCTRKELESAGFGWVFDCESIEFVEVEE*	mmseqs_cdd	common_virus	C0	19592.0	0	19592	GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote_CDS_0026	cloud	direct	high	509	0.998	GCA_001071295.1_00032
GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote	cenote	CDS	16190	17815	GCA_001071295.1	JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295.1_JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295_1_1	GCA_001071295_1_1@C0	16191	17816	GCA_001071295_1_1_27	GCA_001071295_1_1_27	-	19591	.	PF11766.8	Cell-wall agglutinin N-terminal ligand-sugar binding	MNKKIIFTTAALAAVATAQGVKADEVQGTTGAGDQTSTVTTNQITSVQNDHDTATRSDQQPATESGVTDTGSTSDDNQQRGNSTQFSKNGDVIEVKNPEVVVDQSNGTGKYQPFSVEYKNVHFPDDLAINEGDKVTFTLPEEVKFQTNFDFDVYNPEKQVVGKATTDTATNTVTTVFNNYFKDHPLNKQMSLKMDATWTDKVESGKPVTANFNGTLVTANIGKEQVIGKDELISKWGSQDKDDPTVINWAVRLNYARKTLNYVKIIDEMSDNQKLVDDSFVINYVDSVDTWIDKGSAMELVKSMAKSDHGFEITMNRLDRMIYLWYKTKLTNTVKESHNPTNKIELKAETDGAISHSYVQLVGGRGDASGENKPVWEIPNDAPKYEKPSIDLNDIPLMPPAPVLEKPEWKGGTTPFDAPQLDKPEWKGGVTPPDAPVLDKPELVIDIPDPKRDESKPQPKEDKPNTPAPKTNEDPKVEEVKIVKSREKSSENHAKNESEETVEAYSAPAVLPATGSDLGLSLVALGISVATLAFTLKKKEN*	hhsuite_tools	hypothetical_protein	C0	19592.0	0	19592	GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote_CDS_0027	shell	direct	high	1625	0.999	GCA_001071295.1_00033
GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote	cenote	CDS	17838	18341	GCA_001071295.1	JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295.1_JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295_1_1	GCA_001071295_1_1@C0	17839	18342	GCA_001071295_1_1_28	GCA_001071295_1_1_28	-	19591	.	PFAM:PF03819.16	MazG-like-pyrophosphatase	MDIDKIEELTELTKQWFLDRDITQGDVFKQTLKLFEELGELCAGYAKQKEQLTKDSIGDCAVVVVGLAMMIKLDPVDILIKASRSKRNSIEDCFELMIENASEFQFTRKNEVNTTGEFNLCRIISHLKSIAHKLGYDFADCFEIAYNEIKDRKGRWVEGSFVKEEDL*	phrogs_hmm	common_virus	C0	19592.0	0	19592	GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote_CDS_0028	shell	direct	high	503	0.998	GCA_001071295.1_00034
GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote	cenote	CDS	18331	18525	GCA_001071295.1	JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295.1_JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295_1_1	GCA_001071295_1_1@C0	18332	18526	GCA_001071295_1_1_29	GCA_001071295_1_1_29	-	19591	.	.	hypothetical protein	MEKENLLRSKRIYEKRLSEELQLKTISNTRGHHYSANYREWLHKEIKAIDKKLKEIEGDMIDGY*	.	hypothetical_protein	C0	19592.0	0	19592	GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote_CDS_0029	shell	direct	high	194	0.995	GCA_001071295.1_00035
GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote	cenote	CDS	18527	19036	GCA_001071295.1	JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295.1_JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295_1_1	GCA_001071295_1_1@C0	18528	19037	GCA_001071295_1_1_30	GCA_001071295_1_1_30	-	19591	.	cd22992	Monokaryotic chloroplast 1 protein (MOC1) and similar proteins. Monokaryotic chloroplast 1 protein (MOC1) is a Holliday junction (HJ) resolvase, originally identified from the green algae Chlamydomonas reinhardtii, but was later shown to be genetically conserved among green plants, such as Arabidopsis thaliana and Zea mays. Nicotiana tabacum MOC1 (NtMOC1) is exclusively localized to chloroplasts, and is essential for chloroplast nucleoid segregation. Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. NtMOC1 cleaves only four-way junctions and specifically introduces nicks between two cytosines at the homology core. NtMOC1 has the highest structural similarity to RuvC resolvase, suggesting their potentially similar HJ binding and resolution activities. However, the molecular basis for specific HJ resolution by MOC1 remains elusive. This family also includes bacterial homologs.	MKELTLSLDASTSATGWAVYDGPDLLESGVVNPKGTFLERALQMANKLKAIQSRLILKYNKPFKEIVIEQNNVGGGNQQTMVKIGIATGIIISRLIADRVYFVNVRTWRKHFAIKGKGRQVLKQQAIDIVADKFNKDVKDDEADAILIGLYFEEMYRFRDGLENHRLGI*	mmseqs_cdd	nonviral_gene	C0	19592.0	0	19592	GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote_CDS_0030	shell	direct	high	509	0.998	GCA_001071295.1_00036
GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote	cenote	CDS	19011	19370	GCA_001071295.1	JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295.1_JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295_1_1	GCA_001071295_1_1@C0	19012	19371	GCA_001071295_1_1_31	GCA_001071295_1_1_31	-	19591	.	.	hypothetical protein	MKQQKEFYAIANDNNNRFLVDYKNNDRALTFTAKTTDDIRFASIFEKGNEKTDKSIENLAKAVGGRLVKIKAEYEITEEDGSDLKELEVNDEEDEIKAFFEPFIEAWFGVANERIDIIA*	.	hypothetical_protein	C0	19592.0	0	19592	GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote_CDS_0031	cloud	direct	high	359	0.997	GCA_001071295.1_00037
GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote	cenote	CDS	19395	19589	GCA_001071295.1	JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295.1_JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295_1_1	GCA_001071295_1_1@C0	19396	19590	GCA_001071295_1_1_32	GCA_001071295_1_1_32	-	19591	.	PDB:1Z9F_A	Single-stranded-DNA-binding-protein	TRNYENQQGQRVYVTEVVAETFQLLESRKDREAGHSQGYSQPDFGRHEPMNANPMDISDDDLPF*	common_virus_hmm	common_virus	C0	19592.0	0	19592	GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote_CDS_0032	.	unmatched_CDS	none	0	0	.
GCA_001071295.1|JVCZ01000006.1@region_1_2339@tool_cenote	cenote	CDS	1	1158	GCA_001071295.1	JVCZ01000006.1	GCA_001071295.1|JVCZ01000006.1	GCA_001071295.1_JVCZ01000006.1	GCA_001071295.1|JVCZ01000006.1	GCA_001071295_1_4	GCA_001071295_1_4	2	1159	GCA_001071295_1_4_1	GCA_001071295_1_4_1	-	2339	.	PDB:3GS9_A	tail-protein	MRPILYNANETAFETYGLGEIDATKAQVTRERNGNYTLYIEYPASGPLAGTFKNDMRIKSDAGLRTKNQTFFISRILKDSTGILKVYAKHISHLTEKMAIRNNTNATGTAQSALAIWALNALGGIRFDTWSDIDLTSKTSWNIADFKTARDALGGVKGSILDVWGGEYEFDNTVIRLHKQLGRKSPTVLEYGRNILRAEDDQDIEGAYTSVYPYATYTPENQGTGEGGATSQQVTVELPEKYVDGPYIGLYNERRVLIVDFSSNFKDKEVPTVDKLRRLAKEYATNNRLGLPKINTKIEYVDLSKTLDYKLTQILEEAELCDIVPVYYPQIGLTSEDAKLTTIVYDVLLEQNDSVEVGVIGDGFKSSMTSNLSGKIDDLANNQQRL	hallmark_hmm	common_virus	NaN	.	0	2339	GCA_001071295.1|JVCZ01000006.1@region_1_2339@tool_cenote_CDS_0001	shell	ambiguous	low	3	0.003	GCA_001071295.1_00059
GCA_001071295.1|JVCZ01000006.1@region_1_2339@tool_cenote	cenote	CDS	1155	1868	GCA_001071295.1	JVCZ01000006.1	GCA_001071295.1|JVCZ01000006.1	GCA_001071295.1_JVCZ01000006.1	GCA_001071295.1|JVCZ01000006.1	GCA_001071295_1_4	GCA_001071295_1_4	1156	1869	GCA_001071295_1_4_2	GCA_001071295_1_4_2	-	2339	.	PDB:2X8K_A	Distal-Tail-Protein	MGSFTFNGVSSTTHGLRVTSDYIISSTGSDVETVAVPGRDGDLLISKNRLKSVTIELPCTVLSNRKLTDAESEISNWLNVDGYKDLTLSWDPDFIYRSAFIETFEVSSLMRQFGKVKLNFLTYPVKFYKQGRTTQTLTNGVAINGLGNVNAKPIITLVGSGDCTLTINGRKTKLKGVQNRITLDMQANQVYSGNLQAWDKVVRSPQFQMPYLDSGRNLISWDGNFTVSMIPNWGVKL*	hallmark_hmm	common_virus	NaN	.	0	2339	GCA_001071295.1|JVCZ01000006.1@region_1_2339@tool_cenote_CDS_0002	shell	direct	high	713	0.999	GCA_001071295.1_00059
GCA_001071295.1|JVCZ01000006.1@region_1_2339@tool_cenote	cenote	CDS	1868	2338	GCA_001071295.1	JVCZ01000006.1	GCA_001071295.1|JVCZ01000006.1	GCA_001071295.1_JVCZ01000006.1	GCA_001071295.1|JVCZ01000006.1	GCA_001071295_1_4	GCA_001071295_1_4	1869	2339	GCA_001071295_1_4_3	GCA_001071295_1_4_3	-	2339	.	.	hypothetical protein	IYAMAGAVASAASSIAFGAVAAARSALAINSPSKVFRDQVGRAIPEGMAVGIEKYGYYVDDSMTDLANKTVESGKKYTDGFGFNLPGRGDLVSGLTDTLATRFGFAGGGNSSSNVTNNYTLNANGTANDNFFSPENMRRLLRELAYYTNLEGGRMA*	.	hypothetical_protein	NaN	.	0	2339	GCA_001071295.1|JVCZ01000006.1@region_1_2339@tool_cenote_CDS_0003	shell	direct	moderate	462	0.981	GCA_001071295.1_00060
GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote	cenote	tRNA	13061	13136	GCA_001071295.1	JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295.1_JVCZ01000003.1	GCA_001071295.1|JVCZ01000003.1	GCA_001071295_1_1	GCA_001071295_1_1@C0	13062	13137	tRNA-Lys	tRNA-Lys	-	19591	.	tRNAscan-SE score: 30.4	Lys	NA	tRNAscan-SE	.	C0	19592.0	0	19592	GCA_001071295.1|JVCZ01000003.1@region_1_19592@tool_cenote_tRNA_0001	.	.	.	.	.	.