core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote	cenote	CDS	1	2231	GCA_001076955.1	JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955.1_JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955_1_39	GCA_001076955_1_39@C0	1	2232	GCA_001076955_1_39_1	GCA_001076955_1_39_1	-	31948	.	PDB:3GS9_A	tail-protein	MRPILYNANETAFETYGLGEIDATKAQVTRERNGNYTLYIEYPASGPLAGTFKNDMRIKSDAGLRTKNQTFFISRILKDSTGILKVYAKHISHLTEKMAIRNNTNATGTAQSALAIWALNALGGIRFDTWSDIDLTSKTSWNIADFKTARDALGGVKGSILDVWGGEYEFDNTVIRLHKQLGRKSPTVLEYGRNILRAEDDQDIEGAYTSVYPYATYTPENQGTGEGGATSQQVTVELPEKYVDGPYIGLYNERRVLIVDFSSNFKDKEVPTVDKLRRLAKEYATNNRLGLPKINTKIEYVDLSKTLDYKLTQILEEAELCDIVPVYYPQIGLTSEDAKLTTIVYDVLLEQNDSVEVGVIGDGFKSSMTSNLSGKIDDLANNQQRLVNTLPDYLLNAQGNKVWYNKPDDKEHKIGDIWFEKNGLYDRMYVWNGSQWEKRIDTEDVDKIKKEVDKQLEQAKQSTAIEIEKANAKAQEALVKAGTIPDASKLSDQIKTLILNSPDLSRKVTETFNNADNGDTIYSKIVSKVATNFATTAEVSGVYDRVNNLSDKIAKQTVEFNKLTESNKLYERILGTSETGAPDQLSRLVMSSQIFQTEVGKYSTTGGPNMLRNSRADDGLKYWTEANGRLNFTAHQFYLNGQKRMFSLRPGAFVHSPRFIIKQNTNYMLNLIAFDANTARFKIAFCKRRKGSTNDFDEMQIIFDKTGSPAFNSERAVKKSFSFNTGAFDEGYLLFNYQGNPNGW	hallmark_hmm	common_virus	C0	31949	0	31949	GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote_CDS_0001	shell	ambiguous	low	3	0.001	GCA_001076955.1_00995
GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote	cenote	CDS	2228	2941	GCA_001076955.1	JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955.1_JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955_1_39	GCA_001076955_1_39@C0	2229	2942	GCA_001076955_1_39_2	GCA_001076955_1_39_2	-	31948	.	PDB:2X8K_A	Distal-Tail-Protein	MGSFTFNGVSSTTHGLRVTSDYIISSTGSDVETVAVPGRDGDLLISKNRLKSVTIELPCTVLSNRKLTDAESEISNWLNVDGYKDLTLSWDPDFIYRSAFIETFEVSSLMRQFGKVKLNFLTYPVKFYKQGRTTQTLTNGVAINGLGNVNAKPIITLVGSGDCTLTINGRKTKLKGVQNRITLDMQANQVYSGNLQAWDKVVRSPQFQMPYLDSGRNLISWDGNFTVSMIPNWGVKL*	hallmark_hmm	common_virus	C0	31949	0	31949	GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote_CDS_0002	shell	direct	high	713	0.999	GCA_001076955.1_00995
GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote	cenote	CDS	2941	7104	GCA_001076955.1	JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955.1_JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955_1_39	GCA_001076955_1_39@C0	2942	7105	GCA_001076955_1_39_3	GCA_001076955_1_39_3	-	31948	.	Uniprot:T2PM72_GARVA	tail-tape-measure-protein-	MADGKIVIDVQVNGKKLSELANDLKRLETEARRSGQGVKSAGDGIQATGDKALRAGQGFKRAGDRMAEGAKLSETSSNGFRRAGEKIKESSEVASNSGNGFKRAGEKIKESSELAGRSGSGFKQAGEKVKESSDLAQRSGDGFKQASNKIKSASNEASSGGEGFKQAGHKVKASGEEAKGGGAGFKKAGEDAKAGGDKAGQGAKGFEKIKDAIKNFSVGAVAFKAVSSAMNLVSQSMDKAIDRFDTLQRFPKVMKSLGHSSKDVAASTKLLAEGIEGLPTSLDTVVATTQKLTSMTGNLKQSTKLTIALNNAFLASGASTEEASRGLTQYTQMLSSGKVDLQSWKTLQETMSYALQKTAESFGYAGASAQNDLYKALQDGKITFSDFSKRLVELNKGVNGFAEMAKKNSEGIKTSFNNIILAVAKGIANIITEFDNLSKAVTGKSIAKHLDSIKDAINNTFNIIIGVIRGATPVVKSLVSVLGFLKPVLDPLISVFAGVVGAVLLFKGAMLGLSIIKGIGSLIGTLITSLVSLTSTSLIAQGATTGLAGALASLSSGGVFLVVGAIAGLVSWLTQESEEVKKAKAENEEFKRSIDDLHDSVSKGNESYKDRRNEIKATAEDNERLVRKIDELNAVENKTAAQKKELASAAEILNSRIDGLNLVYDKATGTINMTTDAIRKQIEISKQSAEAEAAQQRMVEIAKKRLEIEDKEAEVKKKHAQAIEEVDSKETHLGLTWAENTLKAGMRKKVDEEAEEASKKLQDAKAQLGEQEERLTGIIQNSLEAQAKATEDASGRMIYNMKTMNDEQKKAVEMMQQEFANLKGEVQNAFQAIEQQTALSADQMTANLQNNIDAVDKWSQNLETLAKRGLDQGLIEQMRQAGPKMADQTQALVNASDEQLGALNTKWTEAGDKAKEGFLRGIRATGQELPPEIQSMVTAIGDEFRMALADAGFEVKGREIPQKTAEGIRSGKGDVQQAASEVTEASKQAFNNLPTEAKYSGSQVSGGYAQGITENQGSVQGAVDGLKNASLGVLANLFGEGQAKGAELGAGVGDGVLSRSDVVQGAANTLKSNATATMAGMATDGQAKGSEFGSGIALGIGVGQQVAVGAASAMNLAISAQFLAMSMNGQQYGSQFGTGIGGGINSSQGIATGASNAMKMMINASVRSLGHDGRNAGSQFGTGVTSGVASHNGAVFNASSNLKASAHNGMSGGYNGGYNAGMSIGEGMMGGIYAMAGAVASAASSIAFGAVAAARSALAINSPSKVFRDQVGRAIPEGMAVGIEKYGYYVDDSMTDLANKTVESGKKYTDGFGFNLPGRGDLVSGLTDTLATRFGFAGGGNSSSNVTNNYTLNANGTANDNFFSPENMRRLLRELAYYTNLEGGRMA*	hallmark_hmm	common_virus	C0	31949	0	31949	GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote_CDS_0003	shell	direct	high	4163	1.0	GCA_001076955.1_00996
GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote	cenote	CDS	7104	7673	GCA_001076955.1	JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955.1_JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955_1_39	GCA_001076955_1_39@C0	7105	7674	GCA_001076955_1_39_4	GCA_001076955_1_39_4	-	31948	.	pfam06854	Bacteriophage Gp15 protein. This family consists of bacteriophage Gp15 proteins and related bacterial sequences. The function of this family is unknown	MKLNEPIQNSFELNGRTYEVDCSFDLVLDVFEMFDNGVMNNLEKMRTAVLMMTDEALDNPEDIVAVWEYIDEHFLKTKKERVVYDRHGNPMPIAKDEEDDTRLIDFEVDAQEIYASFVQAYNINLFEAQGRLTWPEFIALLNGMPEGTAVSRLVEIRSWKPSKHDSSEYKSKMRRLQNKYRLDGKEGDE*	mmseqs_cdd	common_virus	C0	31949	0	31949	GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote_CDS_0004	shell	direct	high	569	0.998	GCA_001076955.1_00997
GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote	cenote	CDS	7689	8165	GCA_001076955.1	JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955.1_JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955_1_39	GCA_001076955_1_39@C0	7690	8166	GCA_001076955_1_39_5	GCA_001076955_1_39_5	-	31948	.	PF10666.9	Phage tail assembly chaperone protein Gp14 ()A118	MSISIELKRNHIPIKIGEIELQFDTSLENISRLATLQEDITERFNKYQLELIDRSNNGEFDDLKEGVINKRVIDEAFEMQKKMTEIKYDVLFGDGTFAKLYERYPDLDALDHAFDEVDTLLGAELDRMGQERAKASGAVAESFVKKAKAKKTKKTSKK*	hhsuite_tools	hypothetical_protein	C0	31949	0	31949	GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote_CDS_0005	shell	direct	high	476	0.998	GCA_001076955.1_00998
GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote	cenote	CDS	8228	8680	GCA_001076955.1	JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955.1_JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955_1_39	GCA_001076955_1_39@C0	8229	8681	GCA_001076955_1_39_6	GCA_001076955_1_39_6	-	31948	.	PFAM:PF08813.10	tail-tube-protein	MARQKNALRGHFIAPVTDPKTEPDKTAYKELAKWIEDVDDDTDEATTSVAYYDGDGTEETTVTSVKGSYTFKGTYDKEDEAMALIAGLKYKLGNDRLVWHKVVDSDGKNQHVGIATVSAIKAGSGAAANYEEFSCKISYNSLPKTTAVVG*	hallmark_hmm	common_virus	C0	31949	0	31949	GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote_CDS_0006	shell	direct	high	452	0.998	GCA_001076955.1_00999
GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote	cenote	CDS	8684	9094	GCA_001076955.1	JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955.1_JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955_1_39	GCA_001076955_1_39@C0	8685	9095	GCA_001076955_1_39_7	GCA_001076955_1_39_7	-	31948	.	PFAM:PF12691.6	Minor-capsid-protein	MKSNNDFNVVLRDFINTLGLPLACELDFLSELDSLVLYPLPGGKVERVYMDGSRDVTLIFEIAVKVKNQVTASECLWEINKALSEFDLVLPSQNNSYIFNNLTTTQPSLNERDEQGFYIYLQDITANLTILNNKGV*	hallmark_hmm	common_virus	C0	31949	0	31949	GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote_CDS_0007	cloud	direct	high	410	0.998	GCA_001076955.1_01000
GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote	cenote	CDS	9091	9453	GCA_001076955.1	JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955.1_JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955_1_39	GCA_001076955_1_39@C0	9092	9454	GCA_001076955_1_39_8	GCA_001076955_1_39_8	-	31948	.	PFAM:PF11114.7	Minor-capsid-protein	MGINVTIDLSGATKKVSQASERKAQLEIANQALLDMEPYVPLLHGPLRSSGHVAGNGSQIIYNTPYARAQFYGGAYNKYRSFSFGKYTTPGTGKRWDLKASANHGNKWAEVGLKAMGFNK*	hallmark_hmm	common_virus	C0	31949	0	31949	GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote_CDS_0008	cloud	direct	high	362	0.997	GCA_001076955.1_01001
GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote	cenote	CDS	9453	9812	GCA_001076955.1	JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955.1_JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955_1_39	GCA_001076955_1_39@C0	9454	9813	GCA_001076955_1_39_9	GCA_001076955_1_39_9	-	31948	.	PFAM:PF10665.8	Minor-capsid-protein	MVVIDKRTLVDSVTISKPTGKKDGWGKEEFSYPILLSPVRFDRNFDGPGSVNNPSGQKNPSFRAPGVIFVYPRYCNVELDSSFRNSIVKDGDDEYIVNKIVPVYEPFNRKVFCYEIEVM*	hallmark_hmm	common_virus	C0	31949	0	31949	GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote_CDS_0009	cloud	direct	high	359	0.997	GCA_001076955.1_01002
GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote	cenote	CDS	9799	10197	GCA_001076955.1	JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955.1_JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955_1_39	GCA_001076955_1_39@C0	9800	10198	GCA_001076955_1_39_10	GCA_001076955_1_39_10	-	31948	.	CDD:cd08053	Head-Tail-Connector-Protein	MAYLTHEEYRELGFDSTSEFESLLKRAELAIDLFIRHYYDFHDFDTDHKTRKKAVKLATAYQIQYLDSTGILTAEDKQTISSTTLGRTSVSYSSNNGSRASETASGYNLSLDAFNTLKSAGFLYSGVDYGRY*	hallmark_hmm	common_virus	C0	31949	0	31949	GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote_CDS_0010	cloud	direct	high	398	0.997	GCA_001076955.1_01003
GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote	cenote	CDS	10206	10400	GCA_001076955.1	JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955.1_JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955_1_39	GCA_001076955_1_39@C0	10207	10401	GCA_001076955_1_39_11	GCA_001076955_1_39_11	-	31948	.	.	hypothetical protein	MAKYKATCNFLIESTDQNFDEGTVYELTTAEAEEINQKTSFAFGEEWLEIVSDSGPVAQEVISE*	.	hypothetical_protein	C0	31949	0	31949	GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote_CDS_0011	cloud	direct	high	194	0.995	GCA_001076955.1_01004
GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote	cenote	CDS	10404	10550	GCA_001076955.1	JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955.1_JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955_1_39	GCA_001076955_1_39@C0	10405	10551	GCA_001076955_1_39_12	GCA_001076955_1_39_12	-	31948	.	.	hypothetical protein	MAEETKTTKTEAVTEQAVTVLVKDDVTFTITDPNLVSAFLTSGYEIKE*	.	hypothetical_protein	C0	31949	0	31949	GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote_CDS_0012	cloud	direct	high	146	0.993	GCA_001076955.1_01005
GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote	cenote	CDS	10561	11385	GCA_001076955.1	JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955.1_JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955_1_39	GCA_001076955_1_39@C0	10562	11386	GCA_001076955_1_39_13	GCA_001076955_1_39_13	-	31948	.	PDB:2XD8_E	Major-Capsid-protein	MTINYAAKFDAKVDERFAKEALSTGIVNQDFDFTGVDTVKVYSIPTTAMNDYALTGNTRYGTAAELENNAQTLTLTKDRSFTFTIDKRSVQDTNGTMEAGKALARQLSEVVIPEVDKYRFGKVVAGADTDHVKTGAVTKNNAYEAVLDGQVKLTDALVPEEGRKLHVSPEFYKLIKLDPSFVKNSDLGQEVAFKGQVGAIDGLPVILTPTSRLPENVAFVIAHPIATTSPVKLEDYKIHDNPPGINGYLVEGRIRYDAFVLDSKKKAIYVHKTA*	hallmark_hmm	common_virus	C0	31949	0	31949	GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote_CDS_0013	cloud	direct	high	824	0.999	GCA_001076955.1_01006
GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote	cenote	CDS	11412	11981	GCA_001076955.1	JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955.1_JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955_1_39	GCA_001076955_1_39@C0	11413	11982	GCA_001076955_1_39_14	GCA_001076955_1_39_14	-	31948	.	PFAM:PF06810.10	minor-structural-protein	MSLKREMLVDAGIEDKDTIERIMAAYGSAIKEAKSEVQAENDSLKTQLEQRDQAIKDLQAKEGASEEAKKQLENLQAQFESYKTDSEANLAQVKKTNAVALALKDVGAHNSEDLMKFIDLDKIELTEDGKPKLEETINGLKESSPYLFVTKEEPQEPQPKFALGGNPSAGGDSDLSPEEQALFAGFDSI*	hallmark_hmm	common_virus	C0	31949	0	31949	GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote_CDS_0014	cloud	direct	high	569	0.998	GCA_001076955.1_01007
GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote	cenote	CDS	12145	13305	GCA_001076955.1	JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955.1_JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955_1_39	GCA_001076955_1_39@C0	12146	13306	GCA_001076955_1_39_15	GCA_001076955_1_39_15	-	31948	.	PFAM:PF06152.10	minor-capsid-protein	MARNKYPVLFNEEQLELRASQVGDIYHQMARDLFDEVIDRLLERGAESLDDNPYIWQLERMSQMHMLNEQNLDTIARYSKIGREQLRKVIEDEGFKIYQTTKEQLIDDLGGGDFGNSKHAQELLAGYFEQSHGDISNLINTTLPGIVTDVYRQMVQEVVARQVVGLVTHDKAVSQTVMKWQEIGFKGFIDRGGHYWKVDNYARTVIKTTVMRSYREMRTMPADELGVDTFYYSKKATAREACAPLQHRIVTYGPAREEHGISILSLADHGLGTPGGCLGINCGHMLTPFVPGINELPELGPDVKNITQEEAIKNANAQSKQRAYERAIRKSKEKLHVAEKLGDQELISKFKTKIRDQQATLRDYIADKPFLHRDYSRERYFEPNKE*	hallmark_hmm	common_virus	C0	31949	0	31949	GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote_CDS_0015	cloud	direct	high	1160	0.999	GCA_001076955.1_01008
GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote	cenote	CDS	13310	14767	GCA_001076955.1	JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955.1_JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955_1_39	GCA_001076955_1_39@C0	13311	14768	GCA_001076955_1_39_16	GCA_001076955_1_39_16	-	31948	.	PFAM:PF05133.13	Portal-protein	MTSQSLGNITEHPKIAINKDEYDRIQKNLKYYQSKWDPIRYRNSNRVDKQRARNHLPIARTACKKIASLVFNEQAEISVANGTTNEFIQTVLLNDRFNKNFERYLESCLALGGLAMRPYVDDDKIKISFVQAPVFYPLQSNTQDVSSAAIINKSQKTVGKETIYYTLVELHEWTKDKKYTITNELYRSSERERVGDRVPLSEIYEDLEEEVTLDGLTRPLFTYLKPPGMNNKDINSPLGLSIFDNAKSTIDFINTTYDEFKWEVRMGQRRVLVPDQTVRIGFDHHGDTDLVTREFDPEQNVYEQIDGGKDTPINITDLTTPIRSDDYIKAINEGLALFEMQVGVSPGMFTFDGKSMKTATEVVSENSDTYQLRNSIVSLVDQSIKELVISICEIGKLYGLYSGPIPEMDDITVNLDDGVFVDKNNELDYYAKALLSGLVSKQYAISKALGLSDQEAKQMLADIKKETAESMELERSTSEVDIYGE*	hallmark_hmm	common_virus	C0	31949	0	31949	GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote_CDS_0016	cloud	direct	high	1457	0.999	GCA_001076955.1_01009
GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote	cenote	CDS	14832	16181	GCA_001076955.1	JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955.1_JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955_1_39	GCA_001076955_1_39@C0	14833	16182	GCA_001076955_1_39_17	GCA_001076955_1_39_17	-	31948	.	PDB:5OEA_B	Large-Terminase	MSQSSSSTISRTTKPTIKLSEEINSKFYKVWRSAKPYNVLKGGRNSFKSSVIALLLVFKMIRAITLGQCVEIIIVRKVGNTIFDSVYKKIIWALDKFGMANQFKRTKSPYKIVHRRTGSTFHFYGQDDFQKLKSNEVGKVIAVWYEEAAEFADSEEFDQSNSTFMRQKHPDYPFVQFFWSYNPPRNPYNWINEWVDSLRTADKYLIHESSYLDDELGFVTEQMLDEIERIKTNDYDYYRYLYLGEPVGLGTNVYNMDLFKRADKIPDGERVIGQLFAADTGHQQSATTCLHAVVTNRSNLYLVDNYYYSPAGKVKKKAPSVLSKELHDFVIKQTQKYPNVPVIEMTIDSAEGALRNQYLEDFGIRWHPVAKKKKIIMTEYVQSLLANGRFYYFPTENNLKYFIEEHKRYQWDEKTVKDDDPKVIKEDDHTCDAFQYMIVDNAQLLRLKA*	hallmark_hmm	common_virus	C0	31949	0	31949	GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote_CDS_0017	shell	direct	high	1349	0.999	GCA_001076955.1_01010
GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote	cenote	CDS	16141	16587	GCA_001076955.1	JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955.1_JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955_1_39	GCA_001076955_1_39@C0	16142	16588	GCA_001076955_1_39_18	GCA_001076955_1_39_18	-	31948	.	.	hypothetical protein	MANEENLIPFNERTEKEQREIQRKGGIASGKTRKRKANMKKTLEALLVSKVSNPQLSRVLQDMGFEDDYESALLLVAMQKALKGSSRHMELISKIVNSEGAKDTLDKKEQKARIKALELENKRKAQALDEAGGGADESILIIDDIPND*	.	hypothetical_protein	C0	31949	0	31949	GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote_CDS_0018	cloud	direct	high	446	0.998	GCA_001076955.1_01011
GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote	cenote	CDS	16616	17860	GCA_001076955.1	JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955.1_JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955_1_39	GCA_001076955_1_39@C0	16617	17861	GCA_001076955_1_39_19	GCA_001076955_1_39_19	-	31948	.	PDB:5HFJ_C	Adenine-specific-DNA-methyltransferase	MKIEKINISEITEYENNAKLHPREQIEQIKKSIQEFGNNDPIAIDKNNVIIEGHGRYKALQELGYDEVEVIRLSHMDDEQKRAYILAHNKLTMNSGFDIELLNSELESIVNIDMEDFGFDYYEPESEVEEDDFEVEETKEPIAKLGDIYQLGRHRLMCGDSTDPEQLAKLVDGQQIDLIVTDPPYNVAYEGGTEEALTIMNDSMDNESFRKFLRDAFFAADTVLREGGAFYIWHADSEGYNFRGACSDIGWTVRQCLIWNKNTLVLGRQDYQWKHEPCLYGWKEGAAHYFVNDRSLTTIIEDVEDLNKMTKAELVEYIERMQANSPTTIINENKPTRNGLHPTMKPLKLIERLVRNSSKKGWNVLDSFNGSGSTMIVCEDLGRTYFGMELDPRYVDATIQRWEEHTGQTAVKLN*	common_virus_hmm	common_virus	C0	31949	0	31949	GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote_CDS_0019	cloud	direct	high	1244	0.999	GCA_001076955.1_01012
GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote	cenote	CDS	18199	18633	GCA_001076955.1	JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955.1_JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955_1_39	GCA_001076955_1_39@C0	18200	18634	GCA_001076955_1_39_20	GCA_001076955_1_39_20	-	31948	.	TIGR01637	phage transcriptional regulator, ArpU family. This model represents a family of phage proteins, including ArpU, called a putative autolysin regulatory protein. ArpU was described as a regulator of cellular muramidase-2 of Enterococcus hirae but appears to have been cloned from a prophage. This family appears related to the RinA family of bacteriophage transcriptional activators and to some sporulation-specific sigma factors. We propose that this is a phage transcriptional activator family. [Mobile and extrachromosomal element functions, Prophage functions, Regulatory functions, DNA interactions]	MLFGEVLKNKTKENADNTLKNYRVLLRIAGEEYSPKVTATYSLEPKSAPSSPSRQTEQMVIRRVSAQQELELMASAINRLSDLNLSQILIERYCRVRFRQDKAIYPSLGYSESEYYRLLDRALLEFAEAYKAGELLEYRFLGDN*	mmseqs_cdd	common_virus	C0	31949	0	31949	GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote_CDS_0020	cloud	direct	high	434	0.998	GCA_001076955.1_01014
GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote	cenote	CDS	18634	19017	GCA_001076955.1	JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955.1_JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955_1_39	GCA_001076955_1_39@C0	18635	19018	GCA_001076955_1_39_21	GCA_001076955_1_39_21	-	31948	.	.	hypothetical protein	MDLKKEFFQEADKAIAEFDSIYDFFKVAKSHNAYQDGARYEKYKKQNRMPSSAIVAKFVGFVETDLLYECMKESLDKVGPGRSSEDLVERFYRDNHNYKRNEERKRERRLRRKLEALDLISRMEGWD*	.	hypothetical_protein	C0	31949	0	31949	GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote_CDS_0021	cloud	direct	high	383	0.997	GCA_001076955.1_01015
GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote	cenote	CDS	18968	19222	GCA_001076955.1	JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955.1_JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955_1_39	GCA_001076955_1_39@C0	18969	19223	GCA_001076955_1_39_22	GCA_001076955_1_39_22	-	31948	.	.	hypothetical protein	MIRAIRFENESRLGDPRSPAEKLEIFINKTSCEVLNVVVTSTTKFENSSYEKRSWADEILLIYRRREKDGLEERVLPGSRQGDS*	.	hypothetical_protein	C0	31949	0	31949	GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote_CDS_0022	cloud	ambiguous	low	51	0.2	GCA_001076955.1_01015
GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote	cenote	CDS	19224	19499	GCA_001076955.1	JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955.1_JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955_1_39	GCA_001076955_1_39@C0	19225	19500	GCA_001076955_1_39_23	GCA_001076955_1_39_23	-	31948	.	PFAM:PF10828.7	Rz-like-spanin	MTNNAKLVCANIAFVFFILFVVCINLNARVRVLETSNSDLQRTIQTQKDELEKIEEKNTMQDVIINKLNNDYNSRMAQELQEIADMNGVGG*	phrogs_hmm	hypothetical_protein	C0	31949	0	31949	GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote_CDS_0023	cloud	direct	high	275	0.996	GCA_001076955.1_01016
GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote	cenote	CDS	19496	19738	GCA_001076955.1	JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955.1_JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955_1_39	GCA_001076955_1_39@C0	19497	19739	GCA_001076955_1_39_24	GCA_001076955_1_39_24	-	31948	.	.	hypothetical protein	MKFLMLGLEKPEKFFTKFIVNTSKIVAVTDYALFGERCLKLVLDDGGDRCCTHILTGNGDYARIGSIGQFYKDLISEDER*	.	hypothetical_protein	C0	31949	0	31949	GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote_CDS_0024	cloud	direct	high	242	0.996	GCA_001076955.1_01017
GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote	cenote	CDS	19839	20126	GCA_001076955.1	JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955.1_JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955_1_39	GCA_001076955_1_39@C0	19840	20127	GCA_001076955_1_39_25	GCA_001076955_1_39_25	-	31948	.	.	hypothetical protein	MSLNKTRKRLIRKYRGYYNGRLLGLKIKTADDKKWTILSPTVEDFDPDSMVMEAGVIDASVLSGNGITLENKEITISFGFSKKGNRKLREALRGY*	.	hypothetical_protein	C0	31949	0	31949	GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote_CDS_0025	cloud	direct	high	287	0.997	GCA_001076955.1_01018
GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote	cenote	CDS	20117	20257	GCA_001076955.1	JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955.1_JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955_1_39	GCA_001076955_1_39@C0	20118	20258	GCA_001076955_1_39_26	GCA_001076955_1_39_26	-	31948	.	.	hypothetical protein	MTRPNRYPYTKSQWEEETTLVCFGDDTSFKLRVERNRITKESRQCH*	.	hypothetical_protein	C0	31949	0	31949	GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote_CDS_0026	shell	direct	high	140	0.993	GCA_001076955.1_01019
GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote	cenote	CDS	20260	20598	GCA_001076955.1	JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955.1_JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955_1_39	GCA_001076955_1_39@C0	20261	20599	GCA_001076955_1_39_27	GCA_001076955_1_39_27	-	31948	.	.	hypothetical protein	MSTNLLDETVEFLEKYGKTLDDVLYIQGDDFEITKKNFETVARDTEYYSGYGAQRVAKDLVLVGEDWWIERYEYDGAEWWDFKSIPIRKRYMKNITNLGKGMWDTLKEMNEE*	.	hypothetical_protein	C0	31949	0	31949	GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote_CDS_0027	shell	direct	high	338	0.997	GCA_001076955.1_01020
GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote	cenote	CDS	20595	21104	GCA_001076955.1	JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955.1_JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955_1_39	GCA_001076955_1_39@C0	20596	21105	GCA_001076955_1_39_28	GCA_001076955_1_39_28	-	31948	.	pfam07852	Protein of unknown function (DUF1642). The sequences making up this family are derived from various hypothetical phage and prophage proteins. The region in question is approximately 140 amino acids long.	MNKQELIKHFEEMEYVSIVQMGKKAFIDMIEQLDEPQKVTIPQFVADWYEEHKSDLDYELWDYVSDWEDQKPSEFKEGFNKSDKAFQTLVNMHQFGYTIEKEKRYLVKMKGLREDTSYLNYDSIDAEWYFADAENGPAVGTHCTRKELESAGFGWVFDCESIEFVEVEE*	mmseqs_cdd	common_virus	C0	31949	0	31949	GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote_CDS_0028	cloud	direct	high	509	0.998	GCA_001076955.1_01021
GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote	cenote	CDS	21152	22777	GCA_001076955.1	JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955.1_JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955_1_39	GCA_001076955_1_39@C0	21153	22778	GCA_001076955_1_39_29	GCA_001076955_1_39_29	-	31948	.	PF11766.8	Cell-wall agglutinin N-terminal ligand-sugar binding	MNKKIIFTTAALAAVATAQGVKADEVQGTTGAGDQTSTVTTNQITSVQNDHDTATRSDQQPATESGVTDTGSTSDDNQQRGNSTQFSKNGDVIEVKNPEVVVDQSNGTGKYQPFSVEYKNVHFPDDLAINEGDKVTFTLPEEVKFQTNFDFDVYNPEKQVVGKATTDTATNTVTTVFNNYFKDHPLNKQMSLKMDATWTDKVESGKPVTANFNGTLVTANIGKEQVIGKDELISKWGSQDKDDPTVINWAVRLNYARKTLNYVKIIDEMSDNQKLVDDSFVINYVDSVDTWIDKGSAMELVKSMAKSDHGFEITMNRLDRMIYLWYKTKLTNTVKESHNPTNKIELKAETDGAISHSYVQLVGGRGDASGENKPVWEIPNDAPKYEKPSIDLNDIPLMPPAPVLEKPEWKGGTTPFDAPQLDKPEWKGGVTPPDAPVLDKPELVIDIPDPKRDESKPQPKEDKPNTPAPKTNEDPKVEEVKIVKSREKSSENHAKNESEETVEAYSAPAVLPATGSDLGLSLVALGISVATLAFTLKKKEN*	hhsuite_tools	hypothetical_protein	C0	31949	0	31949	GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote_CDS_0029	shell	direct	high	1625	0.999	GCA_001076955.1_01022
GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote	cenote	CDS	22800	23303	GCA_001076955.1	JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955.1_JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955_1_39	GCA_001076955_1_39@C0	22801	23304	GCA_001076955_1_39_30	GCA_001076955_1_39_30	-	31948	.	PFAM:PF03819.16	MazG-like-pyrophosphatase	MDIDKIEELTELTKQWFLDRDITQGDVFKQTLKLFEELGELCAGYAKQKEQLTKDSIGDCAVVVVGLAMMIKLDPVDILIKASRSKRNSIEDCFELMIENASEFQFTRKNEVNTTGEFNLCRIISHLKSIAHKLGYDFADCFEIAYNEIKDRKGRWVEGSFVKEEDL*	phrogs_hmm	common_virus	C0	31949	0	31949	GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote_CDS_0030	shell	direct	high	503	0.998	GCA_001076955.1_01023
GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote	cenote	CDS	23293	23487	GCA_001076955.1	JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955.1_JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955_1_39	GCA_001076955_1_39@C0	23294	23488	GCA_001076955_1_39_31	GCA_001076955_1_39_31	-	31948	.	.	hypothetical protein	MEKENLLRSKRIYEKRLSEELQLKTISNTRGHHYSANYREWLHKEIKAIDKKLKEIEGDMIDGY*	.	hypothetical_protein	C0	31949	0	31949	GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote_CDS_0031	shell	direct	high	194	0.995	GCA_001076955.1_01024
GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote	cenote	CDS	23489	23998	GCA_001076955.1	JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955.1_JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955_1_39	GCA_001076955_1_39@C0	23490	23999	GCA_001076955_1_39_32	GCA_001076955_1_39_32	-	31948	.	cd22992	Monokaryotic chloroplast 1 protein (MOC1) and similar proteins. Monokaryotic chloroplast 1 protein (MOC1) is a Holliday junction (HJ) resolvase, originally identified from the green algae Chlamydomonas reinhardtii, but was later shown to be genetically conserved among green plants, such as Arabidopsis thaliana and Zea mays. Nicotiana tabacum MOC1 (NtMOC1) is exclusively localized to chloroplasts, and is essential for chloroplast nucleoid segregation. Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. NtMOC1 cleaves only four-way junctions and specifically introduces nicks between two cytosines at the homology core. NtMOC1 has the highest structural similarity to RuvC resolvase, suggesting their potentially similar HJ binding and resolution activities. However, the molecular basis for specific HJ resolution by MOC1 remains elusive. This family also includes bacterial homologs.	MKELTLSLDASTSATGWAVYDGPDLLESGVVNPKGTFLERALQMANKLKAIQSRLILKYNKPFKEIVIEQNNVGGGNQQTMVKIGIATGIIISRLIADRVYFVNVRTWRKHFAIKGKGRQVLKQQAIDIVADKFNKDVKDDEADAILIGLYFEEMYRFRDGLENHRLGI*	mmseqs_cdd	nonviral_gene	C0	31949	0	31949	GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote_CDS_0032	shell	direct	high	509	0.998	GCA_001076955.1_01025
GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote	cenote	CDS	23973	24332	GCA_001076955.1	JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955.1_JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955_1_39	GCA_001076955_1_39@C0	23974	24333	GCA_001076955_1_39_33	GCA_001076955_1_39_33	-	31948	.	.	hypothetical protein	MKQQKEFYAIANDNNNRFLVDYKNNDRALTFTAKTTDDIRFASIFEKGNEKTDKSIENLAKAVGGRLVKIKAEYEITEEDGSDLKELEVNDEEDEIKAFFEPFIEAWFGVANERIDIIA*	.	hypothetical_protein	C0	31949	0	31949	GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote_CDS_0033	cloud	direct	high	359	0.997	GCA_001076955.1_01026
GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote	cenote	CDS	24357	24785	GCA_001076955.1	JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955.1_JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955_1_39	GCA_001076955_1_39@C0	24358	24786	GCA_001076955_1_39_34	GCA_001076955_1_39_34	-	31948	.	PDB:1Z9F_A	Single-stranded-DNA-binding-protein	MLNNVVLVGRMTKDPELRYTPNNQAVATFSLAVNRNFKGQNGEREADFINCVIWRQQAENLANWAKKGALIGITGRIQTRNYENQQGQRVYVTEVVAETFQLLESRKDREAGHSQGYSQPDFGRHEPMNANPMDISDDDLPF*	common_virus_hmm	common_virus	C0	31949	0	31949	GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote_CDS_0034	shell	direct	high	428	0.998	GCA_001076955.1_01027
GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote	cenote	CDS	24789	25433	GCA_001076955.1	JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955.1_JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955_1_39	GCA_001076955_1_39@C0	24790	25434	GCA_001076955_1_39_35	GCA_001076955_1_39_35	-	31948	.	pfam04404	ERF superfamily. The DNA single-strand annealing proteins (SSAPs), such as RecT, Red-beta, ERF and Rad52, function in RecA-dependent and RecA-independent DNA recombination pathways. This family includes proteins related to ERF.	MTKLSFSELQKKMQLEKKKSKDVKYAFRNAEDIYTKFKEVNTDWELTVFDDLVVISDRIFVKSTATVTDGERQFQSIGFAELDTVPVLNTQKGQFKQMQVPQWTGAVSSYARKYALQGLFGIGEKDVDEYPSDMNEPDQPKNKTKPKEQAEAVISVEKANYYLKEVAKISEEKGKQDGSVAQWFLRYLDVADYKQIKESQVEKADLLLNKLKGN*	mmseqs_cdd	common_virus	C0	31949	0	31949	GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote_CDS_0035	shell	direct	high	644	0.998	GCA_001076955.1_01028
GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote	cenote	CDS	25445	25918	GCA_001076955.1	JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955.1_JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955_1_39	GCA_001076955_1_39@C0	25446	25919	GCA_001076955_1_39_36	GCA_001076955_1_39_36	-	31948	.	PFAM:PF05565.10	resistance-protein	MATLYELTGQFLDIYNLDLDDETKQDTLDSIDWNEDYENKVEGYIKVIKNLDADIEARKNEMDRLKKLNDADKAKKDRMKSTLEESMELTGHERVDTTLFKVSFRRSKAVEVDMVLLPDEYKKVEYKADKTALKRLLTDGQEIAGATLVENKNLSIR*	common_virus_hmm	common_virus	C0	31949	0	31949	GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote_CDS_0036	shell	direct	high	473	0.998	GCA_001076955.1_01029
GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote	cenote	CDS	25924	26652	GCA_001076955.1	JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955.1_JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955_1_39	GCA_001076955_1_39@C0	25925	26653	GCA_001076955_1_39_37	GCA_001076955_1_39_37	-	31948	.	.	hypothetical protein	MAKGKYKKRHKFVNINSNELYFMSDKRMNEDVINEIRKYDENGKVENEYKKLTDEINFKKYDFFDNYVNTIANHIIGRIYTSYLNFKLEKVKEHTLKTKKQLLDEIGFNENKTIIAIGTAISSYPSPNNIRFLRNVNNRVDDVFQKETFGYDFGLRWPIEEVVRLSFNQFYRVSNRTIAVKETSPKKDENQDAIVVKEQSKNINDDLIFLKKKAILLNDAKTIEEVVDTANQILKLAEILGG*	.	hypothetical_protein	C0	31949	0	31949	GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote_CDS_0037	shell	direct	high	728	0.999	GCA_001076955.1_01030
GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote	cenote	CDS	26673	26798	GCA_001076955.1	JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955.1_JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955_1_39	GCA_001076955_1_39@C0	26674	26799	GCA_001076955_1_39_38	GCA_001076955_1_39_38	-	31948	.	.	hypothetical protein	MFPFDYDRDYLQPEIEKEHRDPDLWHWYGSGHRYIGDDDEI*	.	hypothetical_protein	C0	31949	0	31949	GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote_CDS_0038	cloud	direct	high	125	0.992	GCA_001076955.1_01031
GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote	cenote	CDS	26785	27117	GCA_001076955.1	JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955.1_JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955_1_39	GCA_001076955_1_39@C0	26786	27118	GCA_001076955_1_39_39	GCA_001076955_1_39_39	-	31948	.	PF09182.10	Bacterial purine repressor, N-terminal	MNERLQLILACIRVGRANVLTTRDIARMTNLSVRKVRGGIAELRLNYSVPIVASRSLPRGYYFAENDDEYTAWVLQYKKQIKTEQKLLDSLKKTSWDSYKKLKERENVSI*	hhsuite_tools	hypothetical_protein	C0	31949	0	31949	GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote_CDS_0039	shell	direct	high	332	0.997	GCA_001076955.1_01032
GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote	cenote	CDS	27114	27311	GCA_001076955.1	JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955.1_JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955_1_39	GCA_001076955_1_39@C0	27115	27312	GCA_001076955_1_39_40	GCA_001076955_1_39_40	-	31948	.	.	hypothetical protein	MFHSKKIKALKQEIHFQKIDLEGKNNILRVTLNDNRKLRKELNQKNQLLKKYQEVLMKYQEEGKL*	.	hypothetical_protein	C0	31949	0	31949	GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote_CDS_0040	cloud	direct	high	197	0.995	GCA_001076955.1_01033
GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote	cenote	CDS	27301	27558	GCA_001076955.1	JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955.1_JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955_1_39	GCA_001076955_1_39@C0	27302	27559	GCA_001076955_1_39_41	GCA_001076955_1_39_41	-	31948	.	.	hypothetical protein	MYNDILGCMTIAGTFFAAGFAGAVWDFKRAQRKKARQAKQDAIMQQYEEDLQEKFEEGYQAFQADLAYARKHSHSDNDWSMADVS*	.	hypothetical_protein	C0	31949	0	31949	GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote_CDS_0041	shell	direct	high	257	0.996	GCA_001076955.1_01034
GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote	cenote	CDS	27560	27700	GCA_001076955.1	JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955.1_JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955_1_39	GCA_001076955_1_39@C0	27561	27701	GCA_001076955_1_39_42	GCA_001076955_1_39_42	-	31948	.	.	hypothetical protein	MRNKNQWRPRIINIMADGSQVEDLTGYTIPGDSGYYNAIRRINKEI*	.	hypothetical_protein	C0	31949	0	31949	GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote_CDS_0042	.	unmatched_CDS	none	0	0	.
GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote	cenote	CDS	27913	28707	GCA_001076955.1	JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955.1_JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955_1_39	GCA_001076955_1_39@C0	27914	28708	GCA_001076955_1_39_43	GCA_001076955_1_39_43	-	31948	.	PDB:4M4W_K	Replicative-helicase	MDLPLVYHINEQETCEIHQCFKWSLNDDVKLQDERNRTFCPECQREKMAREEDQKIGQAHASTILRRTYDVLDKNSIIPSGLKEASFKNFTVTNQIDQEAKNYALRLVSHYLHDGKGNALIMGKAGRGKSHLAMAIASKLNADWKANKLPKSILFVNLPALFIKIQNSFNRKEGMTSNEWLELLKKVDYLILDDLGRSDNAQWKQDFLYSLLDERESTIITTNLVGSEMKSLFETGLVSRITKGGRDLYFKYPDNAEDRMKLPF*	rep_hall_hmm	common_virus	C0	31949	0	31949	GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote_CDS_0043	shell	direct	high	794	0.999	GCA_001076955.1_01035
GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote	cenote	CDS	28711	29565	GCA_001076955.1	JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955.1_JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955_1_39	GCA_001076955_1_39@C0	28712	29566	GCA_001076955_1_39_44	GCA_001076955_1_39_44	-	31948	.	PFAM:PF09681.9	replisome-organiser	MAERRMLSKKIFQSRKFLMMPFEAQALYTHLILSSDDDGVVEAFPIVRMIGAKEDSLGLLVVKKFILPLNDDMVYFITDFEEQNKIRADRVQPSRYRELLLEKTDMVVDGKRVTGQKKYIDGQVSDKCLTNDGQVSDKCPHSIGKDRIVEDSIGEYSLVESRSDNDDDAGQKSFSKIIKDSNIKINERHTQMLMDYIALDHFTIPMIQYAVEKTEDAGSTSFNYLKAILENWKKEGFTSLEQVEDHDRKRQAKQTKKEASPYPIKNPVFSPYTDLLPWEEDEEG*	rep_hall_hmm	common_virus	C0	31949	0	31949	GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote_CDS_0044	cloud	direct	high	854	0.999	GCA_001076955.1_01036
GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote	cenote	CDS	29603	29818	GCA_001076955.1	JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955.1_JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955_1_39	GCA_001076955_1_39@C0	29604	29819	GCA_001076955_1_39_45	GCA_001076955_1_39_45	-	31948	.	PFAM:PF10078.8	transcriptional-repressor	MVNVSKLKGKIVERNTTQEELASKIGVTKSTFYRKMKRNGNFSIKEVNLIVSALNLSKDEAMAIFFSETVA*	phrogs_hmm	hypothetical_protein	C0	31949	0	31949	GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote_CDS_0045	shell	direct	high	215	0.995	GCA_001076955.1_01037
GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote	cenote	CDS	29983	30336	GCA_001076955.1	JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955.1_JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955_1_39	GCA_001076955_1_39@C0	29984	30337	GCA_001076955_1_39_46	GCA_001076955_1_39_46	+	31948	.	PDB:1PRA_A	Repressor-protein	MNVGERIKLRRKELKISADTLAERVGVSRSTIFRYEKGDIEKVGPEVLKKISETLNISPADLMGWEEEAETTTETGYSETDLRKLAESAKTFDGKPLTENDIQAIQNIIEIYLQGRL*	common_virus_hmm	common_virus	C0	31949	0	31949	GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote_CDS_0046	shell	direct	high	353	0.997	GCA_001076955.1_01038
GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote	cenote	CDS	30333	30710	GCA_001076955.1	JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955.1_JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955_1_39	GCA_001076955_1_39@C0	30334	30711	GCA_001076955_1_39_47	GCA_001076955_1_39_47	+	31948	.	PDB:3DTE_A	IrrE-protein	MTIEEICDSEGVTLAYFDNDLWPRPGMIISDMRIIFVNKSLTREAQKRVVLHELGHLDHTEADYTINPIKCENEANRAMIHALLREELERVDKEDFNYLNFMERHKLKSVTDELMVIDEFYRLVG*	common_virus_hmm	common_virus	C0	31949	0	31949	GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote_CDS_0047	shell	direct	high	377	0.997	GCA_001076955.1_01039
GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote	cenote	CDS	30724	31191	GCA_001076955.1	JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955.1_JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955_1_39	GCA_001076955_1_39@C0	30725	31192	GCA_001076955_1_39_48	GCA_001076955_1_39_48	+	31948	.	.	hypothetical protein	MKKVTFAAVAILTLFIAGCSQQEADTDQSQEQSTEQVSSSSKASTSSTSSSDVLQGRSAYDVFVENFKAWVHGVDPKASVNSTEKDIAITISDALTDAQIKQAQPMVDGMLKIKQSGENELRQYDPNFKAPNLIVLDANAKVIAQEQNGKMVLDK*	.	hypothetical_protein	C0	31949	0	31949	GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote_CDS_0048	shell	direct	high	467	0.998	GCA_001076955.1_01040
GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote	cenote	CDS	31323	31946	GCA_001076955.1	JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955.1_JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955_1_39	GCA_001076955_1_39@C0	31324	31947	GCA_001076955_1_39_49	GCA_001076955_1_39_49	+	31948	.	PDB:4BQQ_A	Integrase	MNEINKVALYVRVSTTSQLEEGYSIEEQKAKLESYCDIKDWHIYKVYTDGGFSGSTTERPALEQLIKDAQSKLFDTVLVYKLDRLSRSQKDTLYLIEDIFLKNNIEFVSLLENFDTSTPFGRAVIGLLSVFAQLEREQIKERMQLGKLGRAKAGKSMMWAKTSYGYNYDKETGSMTVNEYEALAVKEIFTSYLAGMSITKLRDKINGE	common_virus_hmm	common_virus	C0	31949	0	31949	GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote_CDS_0049	.	unmatched_CDS	none	0	0	.
GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote	cenote	tRNA	18023	18098	GCA_001076955.1	JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955.1_JVCY01000043.1	GCA_001076955.1|JVCY01000043.1	GCA_001076955_1_39	GCA_001076955_1_39@C0	18024	18099	tRNA-Lys	tRNA-Lys	-	31948	.	tRNAscan-SE score: 30.4	Lys	NA	tRNAscan-SE	.	C0	31949	0	31949	GCA_001076955.1|JVCY01000043.1@region_1_31949@tool_cenote_tRNA_0001	.	.	.	.	.	.