core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_001188045.2|CP030101.1@region_1671524_1683834@tool_cenote	cenote	CDS	1671523	1672221	GCA_001188045.2	CP030101.1	GCA_001188045.2|CP030101.1	GCA_001188045.2_CP030101.1	GCA_001188045.2|CP030101.1	GCA_001188045_2_2	GCA_001188045_2_2@C101	1	699	GCA_001188045_2_2_1596	GCA_001188045_2_2_1596	+	2899513	.	COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant) [Signal transduction mechanisms]. 	MKFQLFIQPKLDVLQGNIVEYEILLRDDSAVPRFPLSELEAVLADEELYLAFSEWFSEAFLDVLKKYPNDRFAINIAPQQLFYIETLHWLDKLKSESHRITVEMTEDIFDVPGHKRHLNANDKNAFILNKIKVIHGLGYHIAIDDVSCGLNSLERVMSYLPYIIEIKFSLIHFKNIPLEDLLLFIKAWANFAQKNKLDFVVEGIETKETMTLLESHGVSIFQGYLVNKPFPV*	mmseqs_cdd	nonviral_gene	C101	12311	1671523	1683834	GCA_001188045.2|CP030101.1@region_1671524_1683834@tool_cenote_CDS_0001	persistent	direct	high	698	0.999	GCA_001188045.2_01730
GCA_001188045.2|CP030101.1@region_1671524_1683834@tool_cenote	cenote	CDS	1672191	1672886	GCA_001188045.2	CP030101.1	GCA_001188045.2|CP030101.1	GCA_001188045.2_CP030101.1	GCA_001188045.2|CP030101.1	GCA_001188045_2_2	GCA_001188045_2_2@C101	669	1364	GCA_001188045_2_2_1597	GCA_001188045_2_2_1597	-	2899513	.	4CYD_A	PROBABLE TRANSCRIPTION REGULATOR, PROBABLE EXPRESSION	MFHTIDFSDIFSSDYSNKISFKKGEIIHSYRDYEEKTPQIGAILEGTAVLEGPTNEGRWMINALIGQHSLFGMESLLETKTAPELTEYRVRALENGTVLFIDREFLLNYLYANPQFFHLILDEVIVRYLFTSKNYKNINQAPIVKVTRILVEIIELLHLHQTEGAIELPVYVTQTFLADYCRSSRARVTEVLEELRESGLLLSKKPITISSHENLLNQIDSFQTGNGLLTR*	hhsuite_tools	hypothetical_protein	C101	12311	1671523	1683834	GCA_001188045.2|CP030101.1@region_1671524_1683834@tool_cenote_CDS_0002	persistent	direct	high	695	0.999	GCA_001188045.2_01731
GCA_001188045.2|CP030101.1@region_1671524_1683834@tool_cenote	cenote	CDS	1673105	1673566	GCA_001188045.2	CP030101.1	GCA_001188045.2|CP030101.1	GCA_001188045.2_CP030101.1	GCA_001188045.2|CP030101.1	GCA_001188045_2_2	GCA_001188045_2_2@C101	1583	2044	GCA_001188045_2_2_1598	GCA_001188045_2_2_1598	-	2899513	.	PDB:3DTE_A	IrrE-protein	MILLYEKLVNKYQDEVTIREEKMPYKLPGLYLNGTIFISKDQSSIEKGCVLVEELMHYKYTVGNITKQETIMDKKQEIFARRKGYEELIPLDDIIACFYLGLREYFEVAEFLEVTEEFLRHTVTHYAEKYGPMYDYGGYFINFGNSIDVYKKF*	common_virus_hmm	common_virus	C101	12311	1671523	1683834	GCA_001188045.2|CP030101.1@region_1671524_1683834@tool_cenote_CDS_0003	persistent	direct	high	461	0.998	GCA_001188045.2_01732
GCA_001188045.2|CP030101.1@region_1671524_1683834@tool_cenote	cenote	CDS	1673563	1673898	GCA_001188045.2	CP030101.1	GCA_001188045.2|CP030101.1	GCA_001188045.2_CP030101.1	GCA_001188045.2|CP030101.1	GCA_001188045_2_2	GCA_001188045_2_2@C101	2041	2376	GCA_001188045_2_2_1599	GCA_001188045_2_2_1599	-	2899513	.	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain  [Transcription]. 	MELNKFVGNKIKQYREERGLNQEALAEKLHTTRQTISRYENGDRKANQDVLFELAKIFNKRLDDFFPERNLPPVDERLVTIAAHIDDDVTEEEMRDILAYIEMKKKLHRGM*	mmseqs_cdd	nonviral_gene	C101	12311	1671523	1683834	GCA_001188045.2|CP030101.1@region_1671524_1683834@tool_cenote_CDS_0004	persistent	direct	high	335	0.997	GCA_001188045.2_01733
GCA_001188045.2|CP030101.1@region_1671524_1683834@tool_cenote	cenote	CDS	1674115	1674543	GCA_001188045.2	CP030101.1	GCA_001188045.2|CP030101.1	GCA_001188045.2_CP030101.1	GCA_001188045.2|CP030101.1	GCA_001188045_2_2	GCA_001188045_2_2@C101	2593	3021	GCA_001188045_2_2_1600	GCA_001188045_2_2_1600	+	2899513	.	PF10654.9	Protein of unknown function (DUF2481)	MDRKLLKEKQIQLIFQLEQEENRFIRKRLIEELEFFEALGDREKGLLTAEQKLLILTPSEYREYKRTKSDVQISRLIGVSRSSLAEWKRKKGLNRKKPQPVQQEMIDVLAFHLDKTKDEIGALPASAIECQYEAFVINEAHN*	hhsuite_tools	hypothetical_protein	C101	12311	1671523	1683834	GCA_001188045.2|CP030101.1@region_1671524_1683834@tool_cenote_CDS_0005	persistent	direct	high	428	0.998	GCA_001188045.2_01734
GCA_001188045.2|CP030101.1@region_1671524_1683834@tool_cenote	cenote	CDS	1674555	1674971	GCA_001188045.2	CP030101.1	GCA_001188045.2|CP030101.1	GCA_001188045.2_CP030101.1	GCA_001188045.2|CP030101.1	GCA_001188045_2_2	GCA_001188045_2_2@C101	3033	3449	GCA_001188045_2_2_1601	GCA_001188045_2_2_1601	+	2899513	.	TIGR01637	phage transcriptional regulator, ArpU family. This model represents a family of phage proteins, including ArpU, called a putative autolysin regulatory protein. ArpU was described as a regulator of cellular muramidase-2 of Enterococcus hirae but appears to have been cloned from a prophage. This family appears related to the RinA family of bacteriophage transcriptional activators and to some sporulation-specific sigma factors. We propose that this is a phage transcriptional activator family. [Mobile and extrachromosomal element functions, Prophage functions, Regulatory functions, DNA interactions]	MQVLVLPENKDINYIKTVQEVKRFFADFERFRMITGLSKKPQLLRNGFLEEPQFAPVAFSARYNKEVILEARWLVEKYTEMLNQMDDLYRTILMECYVERKQDVAVMMDLPYEIAQFKRIKKRAVLEIATLMGILVRK*	mmseqs_cdd	common_virus	C101	12311	1671523	1683834	GCA_001188045.2|CP030101.1@region_1671524_1683834@tool_cenote_CDS_0006	persistent	direct	high	416	0.998	GCA_001188045.2_01735
GCA_001188045.2|CP030101.1@region_1671524_1683834@tool_cenote	cenote	CDS	1675251	1675640	GCA_001188045.2	CP030101.1	GCA_001188045.2|CP030101.1	GCA_001188045.2_CP030101.1	GCA_001188045.2|CP030101.1	GCA_001188045_2_2	GCA_001188045_2_2@C101	3729	4118	GCA_001188045_2_2_1602	GCA_001188045_2_2_1602	+	2899513	.	PDB:4ACV_B	Antigen-protein	MKSLSFMRVLEAVRTMLQEKGGLDVSIVMRDQVEMPTTMIEMIDQEEEESQTAWKEKYRFAIHHYTNETDLAGVEMIDTLIQTGFTLPEGYKLIAVRHYGKQNLVKENTLIHAKTSFEVSICRELKVKI*	common_virus_hmm	common_virus	C101	12311	1671523	1683834	GCA_001188045.2|CP030101.1@region_1671524_1683834@tool_cenote_CDS_0007	persistent	direct	high	389	0.997	GCA_001188045.2_01736
GCA_001188045.2|CP030101.1@region_1671524_1683834@tool_cenote	cenote	CDS	1675653	1676165	GCA_001188045.2	CP030101.1	GCA_001188045.2|CP030101.1	GCA_001188045.2_CP030101.1	GCA_001188045.2|CP030101.1	GCA_001188045_2_2	GCA_001188045_2_2@C101	4131	4643	GCA_001188045_2_2_1603	GCA_001188045_2_2_1603	+	2899513	.	PDB:5A21_H	major-tail-protein	MAFEENLYCDYTPGAAKAVAGKDVILAVFNAAGDKLLAVAGQQGLTVNRSKDSIEITSKDTVGGWKSKIGGMKEWSIENDGLYVADAESHKELAKYFESDSPVCVKIINQASKKGLFGGLAIVADYSFEAPFDEAMTYSVKLDGMGALVDLTITEGGDQMPGETPVAPAE*	hallmark_hmm	common_virus	C101	12311	1671523	1683834	GCA_001188045.2|CP030101.1@region_1671524_1683834@tool_cenote_CDS_0008	persistent	direct	high	512	0.998	GCA_001188045.2_01737
GCA_001188045.2|CP030101.1@region_1671524_1683834@tool_cenote	cenote	CDS	1676213	1676515	GCA_001188045.2	CP030101.1	GCA_001188045.2|CP030101.1	GCA_001188045.2_CP030101.1	GCA_001188045.2|CP030101.1	GCA_001188045_2_2	GCA_001188045_2_2@C101	4691	4993	GCA_001188045_2_2_1604	GCA_001188045_2_2_1604	+	2899513	.	PFAM:PF12363.7	tail-protein	MFEVNDTTYILRFNKQKVKTVELTSGISLVAALTANKGILSYQVIETLFVSGLVEEKGLVPVKQKEALEIFDKLVEEQGLISLNVAVIEKLQEDMGFLFR*	phrogs_hmm	hypothetical_protein	C101	12311	1671523	1683834	GCA_001188045.2|CP030101.1@region_1671524_1683834@tool_cenote_CDS_0009	persistent	direct	high	302	0.997	GCA_001188045.2_01738
GCA_001188045.2|CP030101.1@region_1671524_1683834@tool_cenote	cenote	CDS	1676569	1676961	GCA_001188045.2	CP030101.1	GCA_001188045.2|CP030101.1	GCA_001188045.2_CP030101.1	GCA_001188045.2|CP030101.1	GCA_001188045_2_2	GCA_001188045_2_2@C101	5047	5439	GCA_001188045_2_2_1605	GCA_001188045_2_2_1605	+	2899513	.	.	hypothetical protein	MNHDFDLEKQFAFFVVNFQMSKHDFEELTEVEKNFIMKEWENKVIFESTMLRNAVLNAEQNLNRKRNSRFIDLHKKRQKKADVNYTVNALQAISDNEAKEGKAWIDRIYGANGLRRPKNKEERGKVNGGF*	.	hypothetical_protein	C101	12311	1671523	1683834	GCA_001188045.2|CP030101.1@region_1671524_1683834@tool_cenote_CDS_0010	persistent	direct	high	393	1.0	GCA_001188045.2_01739
GCA_001188045.2|CP030101.1@region_1671524_1683834@tool_cenote	cenote	CDS	1676948	1678816	GCA_001188045.2	CP030101.1	GCA_001188045.2|CP030101.1	GCA_001188045.2_CP030101.1	GCA_001188045.2|CP030101.1	GCA_001188045_2_2	GCA_001188045_2_2@C101	5426	7294	GCA_001188045_2_2_1606	GCA_001188045_2_2_1606	+	2899513	.	UniProtKB:A0A0R1V141_9LACO	minor-tail-protein-	MADSKSFTFELNESVLTAQVGRLDEMAMVVERRFSELKMTIEDVGNADPGSKISESLGGLQSGLGTISSAFGQLGSSSEAITSGFGTAVGSVGGITDAFKNLGSSVQNGTLFSSLATGIGGMSTMLGGVSGGVQGITNLASGFMELKKHLGGLMSSIGGVGGIMGKLTSPMGLVIIGIVALVAAFAYLMTTNESFRNTVMSVVTQVAQLFGQLVASLMPIIMQIVTAVMQIGAALMPMVMQFISFFAQLLAQLMPFINMLISMLMPVIMQIVQVVMSLVSALLPSIMTVIQGIMSVIQFLIPIIMQIATVVVQIVVTIISYISKIMPIVMTIIGVIVSIITTIISYVVIIATTIASVIGKIISFIASVITAVIGIVQPIIGFITNIFTTIVTIIGAAFQMVFTVASKIWNAIMTTISGIIEGIKAVITGISTTVSSVFNGVKRIITGVFDGIKSAWGGLTDFVGNIFDGVSSAIQTVVDNVKGFVNVVIRGINGAIGLINKIPGVEIGKIPQLISGTTNFQGGFARMNEGGRGEMVVLPSGSQVIPHDATMKYARESARGNKSMLYTSQGADLARVENLLERLLQKNPVIKMDDKVVAEVVSRNQANSFDQYNYTMGGAAYS*	hallmark_hmm	common_virus	C101	12311	1671523	1683834	GCA_001188045.2|CP030101.1@region_1671524_1683834@tool_cenote_CDS_0011	persistent	direct	high	1868	0.999	GCA_001188045.2_01740
GCA_001188045.2|CP030101.1@region_1671524_1683834@tool_cenote	cenote	CDS	1678813	1679631	GCA_001188045.2	CP030101.1	GCA_001188045.2|CP030101.1	GCA_001188045.2_CP030101.1	GCA_001188045.2|CP030101.1	GCA_001188045_2_2	GCA_001188045_2_2@C101	7291	8109	GCA_001188045_2_2_1607	GCA_001188045_2_2_1607	+	2899513	.	PDB:2X8K_A	Distal-Tail-Protein	MSDLFLELNGKVHSLSETFPGLSVQEVSRQSPQLSMETAEIAGTDGVIPGMTQFKPFIFSAKCNLQALDIPDYHLAVREIYEFLFQRDSYYIWSDQMPGIRYEVHPKPVDFSRESDRVGLLTIEFDVFKGYAESRGTSLDPMTFEVDLWQMGMNLSNRDDLFYIFKENTFRVYNAGSDRVNPLMRHELDIAMTANGTPTIHNHTTGESFEYRKELQKTDVLLLNNIYPLVNNRRVGKDTNHGIITLEKGWNDFEIKGVTDVTIAFNFPFIYR*	hallmark_hmm	common_virus	C101	12311	1671523	1683834	GCA_001188045.2|CP030101.1@region_1671524_1683834@tool_cenote_CDS_0012	persistent	direct	high	818	0.999	GCA_001188045.2_01741
GCA_001188045.2|CP030101.1@region_1671524_1683834@tool_cenote	cenote	CDS	1679641	1680777	GCA_001188045.2	CP030101.1	GCA_001188045.2|CP030101.1	GCA_001188045.2_CP030101.1	GCA_001188045.2|CP030101.1	GCA_001188045_2_2	GCA_001188045_2_2@C101	8119	9255	GCA_001188045_2_2_1608	GCA_001188045_2_2_1608	+	2899513	.	PDB:3GS9_A	tail-protein-	MDYVIIQSMDKEVEEILTDIDYGSFSYDYEKNTSRAISFTVNKTKQNAAIFDLVGNEAILTYQGQQFVIKKCTPKSIGGTLSKQITAQHICYTVQDHVQYNVKSGRKKYSIQTVLEFALQDNVLGFSYEIQGSFPLVELEDLGNKNGLELVNLCLEEFGAILFADNKKLYFYDEKSWYVRTEKQFRYLYNTEEVSVDTNTDNLKTEIKCYGKQKENADKLTGDNKYMAVVTYTSPNEAIYGKRMANAKSDDKITNNDDLLIFAKKQILDVPETALTISYKGKEPVLERDVWYFIHEPMGFETEVKVTKIKSSHPWSKKFQEIGFSNSRRDMVRIQTQIANQVKKASVDTNKINSFSSIAMNAYDSRILTEVVGVVDGD*	hallmark_hmm	common_virus	C101	12311	1671523	1683834	GCA_001188045.2|CP030101.1@region_1671524_1683834@tool_cenote_CDS_0013	persistent	direct	high	1136	0.999	GCA_001188045.2_01742
GCA_001188045.2|CP030101.1@region_1671524_1683834@tool_cenote	cenote	CDS	1680767	1681066	GCA_001188045.2	CP030101.1	GCA_001188045.2|CP030101.1	GCA_001188045.2_CP030101.1	GCA_001188045.2|CP030101.1	GCA_001188045_2_2	GCA_001188045_2_2@C101	9245	9544	GCA_001188045_2_2_1609	GCA_001188045_2_2_1609	+	2899513	.	.	hypothetical protein	MATEIRVLKNVDDTVFYPKTHVTAVEGLDSATTTTSGLMPASDKTKLNGIEANAEKNNVTAIDIANWNKKQDAILVSENGSNFKITVTNAGELKATKVE*	.	hypothetical_protein	C101	12311	1671523	1683834	GCA_001188045.2|CP030101.1@region_1671524_1683834@tool_cenote_CDS_0014	persistent	direct	high	299	0.997	GCA_001188045.2_01743
GCA_001188045.2|CP030101.1@region_1671524_1683834@tool_cenote	cenote	CDS	1681081	1681656	GCA_001188045.2	CP030101.1	GCA_001188045.2|CP030101.1	GCA_001188045.2_CP030101.1	GCA_001188045.2|CP030101.1	GCA_001188045_2_2	GCA_001188045_2_2@C101	9559	10134	GCA_001188045_2_2_1610	GCA_001188045_2_2_1610	+	2899513	.	PFAM:PF07602.10	tail-protein	MKLDLWKWEMLLQGREFRNKTNDNWQKLMDWSDFISTGLSAIYVYVNKADATLNNKIDTVDKAVNARVNELISGTEQLSEVVDARVDAFGARYPVLRERLNQEQLIYNKKSTVQFDVNTIINMEKQDIGLLTSKTISEAQTVCFLNISSLNEDADIVLEKTGETSFSENLTSLVFAKIGTNERYQMELVGA*	phrogs_hmm	hypothetical_protein	C101	12311	1671523	1683834	GCA_001188045.2|CP030101.1@region_1671524_1683834@tool_cenote_CDS_0015	persistent	direct	high	575	0.998	GCA_001188045.2_01744
GCA_001188045.2|CP030101.1@region_1671524_1683834@tool_cenote	cenote	CDS	1681671	1682150	GCA_001188045.2	CP030101.1	GCA_001188045.2|CP030101.1	GCA_001188045.2_CP030101.1	GCA_001188045.2|CP030101.1	GCA_001188045_2_2	GCA_001188045_2_2@C101	10149	10628	GCA_001188045_2_2_1611	GCA_001188045_2_2_1611	+	2899513	.	.	hypothetical protein	MTEIKRMLQTKEDNSKEQFYPETHVAGIVGLTEYVSGQLPTGVVSVNGKSGSVLLEADDIYAAKKTHSHDVATYTTNGFMSSFDKQKIDELVSPEAGVVSVNGKTGIVDLFAADVEAAEINHTHREASAQESGFLSIDDKEKLDAIQVIALETIKEVIE*	.	hypothetical_protein	C101	12311	1671523	1683834	GCA_001188045.2|CP030101.1@region_1671524_1683834@tool_cenote_CDS_0016	persistent	direct	high	479	0.998	GCA_001188045.2_01745
GCA_001188045.2|CP030101.1@region_1671524_1683834@tool_cenote	cenote	CDS	1682147	1682683	GCA_001188045.2	CP030101.1	GCA_001188045.2|CP030101.1	GCA_001188045.2_CP030101.1	GCA_001188045.2|CP030101.1	GCA_001188045_2_2	GCA_001188045_2_2@C101	10625	11161	GCA_001188045_2_2_1612	GCA_001188045_2_2_1612	+	2899513	.	6R5W_A	Gp15 protein	MTKIVKMSEKNEHGTLEQFYPETHAEAVKGLVSVSEEEKTIWDQKESTAGAEQKANTALNSAKDYVDTIGEGTVIFKGANLMGAGQSFKWDASKLKFGMTLLFSRYDAANNTPQDYYYHSVFLSKAQLVELAGKGILVQMPSTTYGDRKYLYVSTTGLSGHFDNLNYAAWALRQVTIM*	hhsuite_tools	hypothetical_protein	C101	12311	1671523	1683834	GCA_001188045.2|CP030101.1@region_1671524_1683834@tool_cenote_CDS_0017	persistent	direct	high	536	0.998	GCA_001188045.2_01746
GCA_001188045.2|CP030101.1@region_1671524_1683834@tool_cenote	cenote	CDS	1682702	1683124	GCA_001188045.2	CP030101.1	GCA_001188045.2|CP030101.1	GCA_001188045.2_CP030101.1	GCA_001188045.2|CP030101.1	GCA_001188045_2_2	GCA_001188045_2_2@C101	11180	11602	GCA_001188045_2_2_1613	GCA_001188045_2_2_1613	+	2899513	.	PFAM:PF05105.11	Bacteriophage-holin	MEVILKIGILGFGAIFGYLFGEVDLLVKVLVCFIVADYISGLLASGYLGELSSKMGFKGIAKKIAILILVAIAHQIDLILGTHNTTRDAVIFFYLANELISILENFVRMGMKVPEVLKNLILIFDAKSGEDEEKHDKDMD*	common_virus_hmm	common_virus	C101	12311	1671523	1683834	GCA_001188045.2|CP030101.1@region_1671524_1683834@tool_cenote_CDS_0018	persistent	direct	high	422	0.998	GCA_001188045.2_01747
GCA_001188045.2|CP030101.1@region_1671524_1683834@tool_cenote	cenote	CDS	1683105	1683833	GCA_001188045.2	CP030101.1	GCA_001188045.2|CP030101.1	GCA_001188045.2_CP030101.1	GCA_001188045.2|CP030101.1	GCA_001188045_2_2	GCA_001188045_2_2@C101	11583	12311	GCA_001188045_2_2_1614	GCA_001188045_2_2_1614	+	2899513	.	PDB:5EMI_A	Cell-wall-hydrolase-autolysin	MTKIWIDAGHGGKDSGASGNGLVEKNWVLTVAKQLQTELVKAGFEVGMTRTNDTFYELSDRAKKANSFKADLFISLHFNAGGGKGYEDYIYTSVPAATVEIQKIIHKNIIAKVTKHGMNDRGMKKANFAVLRETAMDAILLEAGFCDSTDALILEKKAYQTDYCLGIVAAVQEIFGAMVTKYRAGKYLTSDDAISGTNIKGYLEAGTKVFVYKETEKTLNLTTTKGVPGSWVLKTEVNTGKR*	common_virus_hmm	common_virus	C101	12311	1671523	1683834	GCA_001188045.2|CP030101.1@region_1671524_1683834@tool_cenote_CDS_0019	persistent	direct	high	728	0.999	GCA_001188045.2_01748