core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	genomad_gene	genomad_length	genomad_strand	genomad_gc_content	genomad_genetic_code	genomad_rbs_motif	genomad_marker	genomad_evalue	genomad_bitscore	genomad_uscg	genomad_plasmid_hallmark	genomad_virus_hallmark	genomad_taxid	genomad_taxname	genomad_annotation_conjscan	genomad_annotation_amr	genomad_annotation_accessions	genomad_annotation_description	genomad_element_name_std	genomad_element_name_orig	genomad_element_gene_wrt_to_contig	genomad_element_gene_wrt_to_element	genomad_element_gene_start	genomad_element_gene_end	genomad_protein_translation	genomad_phage_region_id	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad	genomad	CDS	39217	40431	GCA_001228845.1	CUFO01000009.1	GCA_001228845.1|CUFO01000009.1	GCA_001228845.1_CUFO01000009.1	GCA_001228845.1|CUFO01000009.1|provirus_39217_54864_42	1215	-1	0.328	11	AGGAG	GENOMAD.111131.VV	6.291e-16	83	0	0	0	1246	Caudoviricetes	NA	NA	NA	NA	GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad	GCA_001228845.1|CUFO01000009.1	42	1	1	1215	MWHEKFTNKHCETKYRYYEKYKDPLTNKWRRVSVVLNKNGKQSQKEAQKRLNERIEAKVNDKTPTTLKTLTFHAACDEWFEHYKLISGSKQSTITTKSYKVAHIKRNIDKDILVQNMNAKVIQDLINSSLKDGLSHKVVKDDLSIIKNILRYTQKKYNITDISYIDDVVMPKKATTREEIKAKRENYLEMAEILAIAEELKRIANKKRASYMKRSYLFTAYIVEFQALNGMRIGELLAIQPDNIDFENKKLLIDGTIHWRKDGNKIGFKDTTKTASSYRTISLTTRSCDILRKVMLENKRAIQWENMYVDRGFIFTSHRGNPLPLTSINRNIQIATQNIGIEKHVTSHSMRHSHISLLSQLGVSLRAIMDRVGHTDHKTTLQIYSHVTEQMDKDMMNKLEKVGN	GCA_001228845.1|CUFO01000009.1|provirus_39217_54864	GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad_CDS_0001	shell	direct	high	1215	1.0	GCA_001228845.1_01655
GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad	genomad	CDS	40480	40713	GCA_001228845.1	CUFO01000009.1	GCA_001228845.1|CUFO01000009.1	GCA_001228845.1_CUFO01000009.1	GCA_001228845.1|CUFO01000009.1|provirus_39217_54864_43	234	-1	0.286	11	AGGAG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad	GCA_001228845.1|CUFO01000009.1	43	2	1264	1497	MYFNDWKVIINGKGSHDVVTNEDTLLILQDYQHVEIALKLVNDTIQVKSLGYGEDVCINPITKEITVNVTNLLEDDE	GCA_001228845.1|CUFO01000009.1|provirus_39217_54864	GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad_CDS_0002	shell	direct	high	234	1.0	GCA_001228845.1_01656
GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad	genomad	CDS	40765	40902	GCA_001228845.1	CUFO01000009.1	GCA_001228845.1|CUFO01000009.1	GCA_001228845.1_CUFO01000009.1	GCA_001228845.1|CUFO01000009.1|provirus_39217_54864_44	138	-1	0.297	11	AGGAG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad	GCA_001228845.1|CUFO01000009.1	44	3	1549	1686	MEKLDLHKLNDEHVKSLINDLKYPTTHIDEIEVIGKVIYNYQTFD	GCA_001228845.1|CUFO01000009.1|provirus_39217_54864	GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad_CDS_0003	shell	direct	high	138	1.0	GCA_001228845.1_01657
GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad	genomad	CDS	40943	41347	GCA_001228845.1	CUFO01000009.1	GCA_001228845.1|CUFO01000009.1	GCA_001228845.1_CUFO01000009.1	GCA_001228845.1|CUFO01000009.1|provirus_39217_54864_45	405	-1	0.296	11	AGGAG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad	GCA_001228845.1|CUFO01000009.1	45	4	1727	2131	MFEKLLTSIGIESLEINTVLKTQQVHSNGVLDGSVVIESGASEQTINRIELTLIERYDNPDKRSQFPILENELQTFTLHVDRSICENTKEIEHFQFNIDELEFKTNPNKLILKTHAYLSHSVDAYDEDEIRLID	GCA_001228845.1|CUFO01000009.1|provirus_39217_54864	GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad_CDS_0004	shell	direct	high	405	1.0	GCA_001228845.1_01658
GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad	genomad	CDS	41413	41574	GCA_001228845.1	CUFO01000009.1	GCA_001228845.1|CUFO01000009.1	GCA_001228845.1_CUFO01000009.1	GCA_001228845.1|CUFO01000009.1|provirus_39217_54864_46	162	-1	0.302	11	AGGAG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad	GCA_001228845.1|CUFO01000009.1	46	5	2197	2358	MKKFLALIFASTLILGACDTKDVEDSTKKRKDPKTEVDDKGRAKGEKIEKELK	GCA_001228845.1|CUFO01000009.1|provirus_39217_54864	GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad_CDS_0005	shell	direct	high	162	1.0	GCA_001228845.1_01659
GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad	genomad	CDS	41639	41833	GCA_001228845.1	CUFO01000009.1	GCA_001228845.1|CUFO01000009.1	GCA_001228845.1_CUFO01000009.1	GCA_001228845.1|CUFO01000009.1|provirus_39217_54864_47	195	-1	0.256	11	AGGAG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad	GCA_001228845.1|CUFO01000009.1	47	6	2423	2617	MLIFIIILFLISIILYVLSFFLAQNEGLYYKNNCRTISIILIAIGTLCLMGYLVQYLSSHYLGI	GCA_001228845.1|CUFO01000009.1|provirus_39217_54864	GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad_CDS_0006	.	unmatched_CDS	none	0	0	.
GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad	genomad	CDS	41883	42050	GCA_001228845.1	CUFO01000009.1	GCA_001228845.1|CUFO01000009.1	GCA_001228845.1_CUFO01000009.1	GCA_001228845.1|CUFO01000009.1|provirus_39217_54864_48	168	-1	0.220	11	GGA/GAG/AGG	GENOMAD.170087.VV	1.647e-24	96	0	0	0	1	NA	NA	NA	PF17412	NA	GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad	GCA_001228845.1|CUFO01000009.1	48	7	2667	2834	MEILNYKISYEYDSDLYTVTAKTNKGKTFTYTFSENHTLKEIRYTLEEIAKQLDI	GCA_001228845.1|CUFO01000009.1|provirus_39217_54864	GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad_CDS_0007	shell	direct	high	168	1.0	GCA_001228845.1_01660
GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad	genomad	CDS	42220	43611	GCA_001228845.1	CUFO01000009.1	GCA_001228845.1|CUFO01000009.1	GCA_001228845.1_CUFO01000009.1	GCA_001228845.1|CUFO01000009.1|provirus_39217_54864_49	1392	-1	0.216	11	GGAG/GAGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad	GCA_001228845.1|CUFO01000009.1	49	8	3004	4395	MKKVLYYFILISSFFMIIGGISKVSQDGLTIPDIFMFIIFISLVVFSIVKLFKHKKLDYKSNKSNNNHKNISNSETTQSKNVQPNNHIKKNNVIRDIETNNSRKEKQENLITNNKTNTLNENKINLNENLQKNNKDLVLEVKDDNNNNNHYSDLNANDILILHLNKNREVGKEVKNHFYLLENQINVDKILNKLINLNFLDIKSNFDVSLPYLKVPELKDILREYKLKLGGNKPELIERVKTNIDENAIELPHVYVPTSKGNEIIGETEYILHFYNSPIISLGSAHKIAKEVLNVDDKIEYIYLYLLQQNQKSNNSDHRAENIINNLVFYYKKTNKNKNVIRKYTNYATYLSVTQGIHSAAFLYSNEENIIDRLFIYFNYHLEYYENMLFIDNISRRLFKNLFYEDIKSFENTDKNFCDEICELLFAQIYNNNNITLNNLPTINYILEKIKNENELRVTKYDF	GCA_001228845.1|CUFO01000009.1|provirus_39217_54864	GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad_CDS_0008	shell	direct	high	1392	1.0	GCA_001228845.1_01661
GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad	genomad	CDS	43731	44387	GCA_001228845.1	CUFO01000009.1	GCA_001228845.1|CUFO01000009.1	GCA_001228845.1_CUFO01000009.1	GCA_001228845.1|CUFO01000009.1|provirus_39217_54864_50	657	-1	0.277	11	AGGAG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad	GCA_001228845.1|CUFO01000009.1	50	9	4515	5171	MELFAMSDSHGRLIQSYRKQKNMTLVELGRKTNLSHAYLSKIENNKATPSREVLKKISEILDPDGNEDLFNKLATATGKTHKVEKDSEVYKWLLKSGRIKENGLGKIEVLEYSYFKLNYILEECSPLVYDVKKEIEGEPLATIPLTERMINKIYAAINKIVFQELVENPDLLNSIENEEILSHHVREQEDKLHLLSNSINNLTLEELAMIIHDDDKLV	GCA_001228845.1|CUFO01000009.1|provirus_39217_54864	GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad_CDS_0009	cloud	direct	high	657	1.0	GCA_001228845.1_01662
GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad	genomad	CDS	44542	44763	GCA_001228845.1	CUFO01000009.1	GCA_001228845.1|CUFO01000009.1	GCA_001228845.1_CUFO01000009.1	GCA_001228845.1|CUFO01000009.1|provirus_39217_54864_51	222	1	0.261	11	GGAG/GAGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad	GCA_001228845.1|CUFO01000009.1	51	10	5326	5547	MNIKPKTEIIKLLMFKKGHSLRSFSIANNLSAPYLSDVLNLKVIPSGRYAKKIANGLNVEISEIFEIEQKEEV	GCA_001228845.1|CUFO01000009.1|provirus_39217_54864	GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad_CDS_0010	cloud	direct	high	222	1.0	GCA_001228845.1_01663
GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad	genomad	CDS	44767	45039	GCA_001228845.1	CUFO01000009.1	GCA_001228845.1|CUFO01000009.1	GCA_001228845.1_CUFO01000009.1	GCA_001228845.1|CUFO01000009.1|provirus_39217_54864_52	273	1	0.333	11	AGGAG	GENOMAD.111065.VV	8.586e-40	142	0	0	0	17384	Triavirus	NA	NA	PF18010;COG3311;TIGR02417	Predicted DNA-binding transcriptional regulator AlpA	GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad	GCA_001228845.1|CUFO01000009.1	52	11	5551	5823	MPHVKLQDLPTKQNTALEEKQIVFPVKYAKPKLICEIFNISYSTCYRLLKSYEDDNLGIEDMYIDISSTLTLVNVEQFEKYLKAKHKKYL	GCA_001228845.1|CUFO01000009.1|provirus_39217_54864	GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad_CDS_0011	shell	direct	high	273	1.0	GCA_001228845.1_01664
GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad	genomad	CDS	45059	45217	GCA_001228845.1	CUFO01000009.1	GCA_001228845.1|CUFO01000009.1	GCA_001228845.1_CUFO01000009.1	GCA_001228845.1|CUFO01000009.1|provirus_39217_54864_53	159	1	0.296	11	GGAG/GAGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad	GCA_001228845.1|CUFO01000009.1	53	12	5843	6001	MAKFIFKLILISAISFLSGWLLGIHVAFAIHMLGSLIAALNIEENGGVVNEQ	GCA_001228845.1|CUFO01000009.1|provirus_39217_54864	GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad_CDS_0012	shell	direct	high	159	1.0	GCA_001228845.1_01665
GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad	genomad	CDS	45207	45620	GCA_001228845.1	CUFO01000009.1	GCA_001228845.1|CUFO01000009.1	GCA_001228845.1_CUFO01000009.1	GCA_001228845.1|CUFO01000009.1|provirus_39217_54864_54	414	1	0.239	11	AGGAG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad	GCA_001228845.1|CUFO01000009.1	54	13	5991	6404	MNNKQKFNKQIKFGEENKKMKNLTNQDFKDIENKVKHDLIFKDKKHIKKMTKLLQKRRNKDISIIKKMYPYLSNNEILEITNDYQEYKNLVQATETFTDFPIIYQDSNISKFLTEENIEDLKMAVEEMLVFVERLEE	GCA_001228845.1|CUFO01000009.1|provirus_39217_54864	GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad_CDS_0013	shell	direct	high	414	1.0	GCA_001228845.1_01666
GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad	genomad	CDS	45624	45827	GCA_001228845.1	CUFO01000009.1	GCA_001228845.1|CUFO01000009.1	GCA_001228845.1_CUFO01000009.1	GCA_001228845.1|CUFO01000009.1|provirus_39217_54864_55	204	1	0.309	11	AGGAG	GENOMAD.102223.VV	2.083e-13	65	0	0	0	1246	Caudoviricetes	NA	NA	PF23767	NA	GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad	GCA_001228845.1|CUFO01000009.1	55	14	6408	6611	MDKDIEIIKSIYKTLDYAVKDKRTEYTHIVEEGNQEWKETLNREQQLQFICEWVMQQIENNFEWENL	GCA_001228845.1|CUFO01000009.1|provirus_39217_54864	GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad_CDS_0014	cloud	direct	high	204	1.0	GCA_001228845.1_01667
GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad	genomad	CDS	45828	46136	GCA_001228845.1	CUFO01000009.1	GCA_001228845.1|CUFO01000009.1	GCA_001228845.1_CUFO01000009.1	GCA_001228845.1|CUFO01000009.1|provirus_39217_54864_56	309	1	0.269	11	GGAG/GAGG	GENOMAD.225715.VP	4.126e-45	158	0	0	0	1246	Caudoviricetes	NA	NA	PF07342	NA	GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad	GCA_001228845.1|CUFO01000009.1	56	15	6612	6920	MNFELNNALCDLELLKERIDDVVTSFVWFNDEYFTHEPNHVLNKEDILNHGYRYHEHRIKNSQTIDLMLMYQKEFSDLVERFKKIEKTLPDMNSLATKSDNA	GCA_001228845.1|CUFO01000009.1|provirus_39217_54864	GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad_CDS_0015	cloud	direct	high	309	1.0	GCA_001228845.1_01668
GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad	genomad	CDS	46231	47103	GCA_001228845.1	CUFO01000009.1	GCA_001228845.1|CUFO01000009.1	GCA_001228845.1_CUFO01000009.1	GCA_001228845.1|CUFO01000009.1|provirus_39217_54864_57	873	1	0.322	11	GGAG/GAGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad	GCA_001228845.1|CUFO01000009.1	57	16	7015	7887	MDFQKVKLNNNFNIHIVQYKNLYSNSCSSFDLYNWSDWLNKLQIPMINEDKYKRGLCVYGDFEDIEKDNQNISKYRSDATLINRSAITLDYDEINDFKGLYEVLKAKLEHVSWVFHTTYSYTAEKPRIRLIVPLNEPVSASDYRKYSNGLARYIGYPVDESSFVPSQAMALPVKKSKDSIYIFKYNDAPAIKKEDLNKMVVNDEPITVKYSNQINKRDSSYWREIAFGVGEGERNQTLASLTGYLLRRYVDANLVYGLVSAWAMTCRPPIEQKEVNRTFKSILKKDSNNK	GCA_001228845.1|CUFO01000009.1|provirus_39217_54864	GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad_CDS_0016	cloud	direct	high	873	1.0	GCA_001228845.1_01669
GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad	genomad	CDS	47116	48603	GCA_001228845.1	CUFO01000009.1	GCA_001228845.1|CUFO01000009.1	GCA_001228845.1_CUFO01000009.1	GCA_001228845.1|CUFO01000009.1|provirus_39217_54864_58	1488	1	0.331	11	AGGAG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad	GCA_001228845.1|CUFO01000009.1	58	17	7900	9387	MEDVTKEEVFELIDENNYLANSDDWRSKLRRSATTQALKKTTANAELIMENDESLKGLVQYDSFEKITKLKRLPYWRTNDDNNYYWADIDTTHVISHIDRYYNVQFSRDIMDSVIEKEAYHNKFHPIKSMIESKSWDGIERIETLFIDYLGAEDNHYNREVTKKWMMGAVARIYHPGIKYDSMIILYGGQGDGKSTTVSKLGGHWYNQSLKTFKGDESYKKIQGSWLCEIEELAAFQKSTIEDIKSFISAIVDIYRASYGKRIERYPRQCVFIGTTNNYEFLKDQTGNRRFFPITTDKNKATKSPFDDLTQDIVQQMFAEAKVYFDEDPTDKALLLDKEASETALKVQEEHSEKDALVGEIEEFLERPIPSDYWYRTLEEKRVSAHDVIDQDYIKLYGDGKLIELPNTKPGAYVWRDKVCSMEIWKVMMKRDDQPQPHNLRKIDKALRNTRYCGQSKSRYRFGEGIGRQYGFQIDLSSYYRDLKNENNNKGTTGQ	GCA_001228845.1|CUFO01000009.1|provirus_39217_54864	GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad_CDS_0017	cloud	direct	high	1488	1.0	GCA_001228845.1_01670
GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad	genomad	CDS	48874	49236	GCA_001228845.1	CUFO01000009.1	GCA_001228845.1|CUFO01000009.1	GCA_001228845.1_CUFO01000009.1	GCA_001228845.1|CUFO01000009.1|provirus_39217_54864_59	363	1	0.306	11	AGGAG	GENOMAD.224407.VP	4.246e-21	90	0	0	0	1246	Caudoviricetes	NA	NA	NA	NA	GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad	GCA_001228845.1|CUFO01000009.1	59	18	9658	10020	MNKNQLKSEILEYIESHGGTTFVEIENVFKENNFNYKGDGAYTSGQHPNVVFWIGWNQEAFNIIAELKRDGLIEMDICPPIIYLVDGKGLDLPIVKSKHIKTDHWLPVAFNICKKEMEFV	GCA_001228845.1|CUFO01000009.1|provirus_39217_54864	GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad_CDS_0018	cloud	direct	high	363	1.0	GCA_001228845.1_01671
GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad	genomad	CDS	49238	49882	GCA_001228845.1	CUFO01000009.1	GCA_001228845.1|CUFO01000009.1	GCA_001228845.1_CUFO01000009.1	GCA_001228845.1|CUFO01000009.1|provirus_39217_54864_60	645	1	0.327	11	GGAG/GAGG	GENOMAD.223476.VP	4.344e-124	392	0	0	0	1246	Caudoviricetes	NA	NA	PF16560	Putative mobile pathogenicity island	GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad	GCA_001228845.1|CUFO01000009.1	60	19	10022	10666	MNIEIIANEFETRAATLLRYFTGLCESSYKMPIAFKIYNDPFNTVYLVSKGKMYAHILIKDCEVRKSFEIASEKHTEKLIESIEGYYTGYDLHDGTHDTISDMMASFMFDNEYFMYGLETFAESNNSDMFDYMSKDFNIDELEGVQTSNADVIGNMEALYQLATGINEPAPELVEGLKIITEFIQNEKANEVDSKALIKRLNELKQSYYDGVKA	GCA_001228845.1|CUFO01000009.1|provirus_39217_54864	GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad_CDS_0019	shell	direct	high	645	1.0	GCA_001228845.1_01672
GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad	genomad	CDS	50251	50583	GCA_001228845.1	CUFO01000009.1	GCA_001228845.1|CUFO01000009.1	GCA_001228845.1_CUFO01000009.1	GCA_001228845.1|CUFO01000009.1|provirus_39217_54864_61	333	1	0.300	11	GGAG/GAGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad	GCA_001228845.1|CUFO01000009.1	61	20	11035	11367	MTITIEKELTNDHIRVLNVLRNTKHEIITKQNIFNQLNMEFNRNNDRWLRNTINSLVVDYGYPIGYSYKKDARGYFMVKSEEQKELALRSIKRHIEGSLKRYEALKKTEI	GCA_001228845.1|CUFO01000009.1|provirus_39217_54864	GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad_CDS_0020	shell	direct	high	333	1.0	GCA_001228845.1_01673
GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad	genomad	CDS	50593	51345	GCA_001228845.1	CUFO01000009.1	GCA_001228845.1|CUFO01000009.1	GCA_001228845.1_CUFO01000009.1	GCA_001228845.1|CUFO01000009.1|provirus_39217_54864_62	753	1	0.299	11	GGA/GAG/AGG	GENOMAD.131437.VV	3.87e-126	400	0	0	0	1246	Caudoviricetes	NA	NA	NA	NA	GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad	GCA_001228845.1|CUFO01000009.1	62	21	11377	12129	MSAAIEIIQEKVSDYELFTRFNTYYIQSRIALIESDIEDMYNRTTPSLCSDIVSESIYYESYSVENLAIAILEERQKLERYKSRSQRDLNAFYTVLGRFSTKEQKYIKNYVNTHSEAHMNVIERFKIELYKYIQTNRNERNKGIENNYSYINDKHQKLKTYPHKLTLNQEKTLREKEDGATEKSMNNDEFVAKLNDLDKKSFKEFIYNRNENNIDFEKVLILLQTIPKRLPQKEIKKPYNYIREIGLNTN	GCA_001228845.1|CUFO01000009.1|provirus_39217_54864	GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad_CDS_0021	shell	direct	high	753	1.0	GCA_001228845.1_01674
GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad	genomad	CDS	51360	51947	GCA_001228845.1	CUFO01000009.1	GCA_001228845.1|CUFO01000009.1	GCA_001228845.1_CUFO01000009.1	GCA_001228845.1|CUFO01000009.1|provirus_39217_54864_63	588	1	0.321	11	GGAG/GAGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad	GCA_001228845.1|CUFO01000009.1	63	22	12144	12731	MKTAKYFDEYNEYVTGQRENINKIENERQELSQRIKEDKAKYKELIANSQDDEADALYTTFDSNEKKLKALEKRLSTKKEVFDEARRKKAIELIKHQADLPHLYKKDKERILAKFEPIVEEYNKVVDEIAALNDEYEYEFYRFVGPYDKENFEKDKEVRAEIKNHFSPNKYSNYVSGDELPFIDIRNKMQLRGAK	GCA_001228845.1|CUFO01000009.1|provirus_39217_54864	GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad_CDS_0022	shell	direct	high	588	1.0	GCA_001228845.1_01675
GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad	genomad	CDS	51947	52156	GCA_001228845.1	CUFO01000009.1	GCA_001228845.1|CUFO01000009.1	GCA_001228845.1_CUFO01000009.1	GCA_001228845.1|CUFO01000009.1|provirus_39217_54864_64	210	1	0.295	11	GGAG/GAGG	GENOMAD.189122.VV	2.688e-26	102	0	0	0	1	NA	NA	NA	PF16722	Pathogenicity island protein gp6 in Staphylococcus	GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad	GCA_001228845.1|CUFO01000009.1	64	23	12731	12940	MARKYNLDKVSNYLLTETTLSAEETQKVLDVVEEQFSQNIQQQRKDELTQQSQRERKLMKMFEENRIVK	GCA_001228845.1|CUFO01000009.1|provirus_39217_54864	GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad_CDS_0023	shell	direct	high	210	1.0	GCA_001228845.1_01676
GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad	genomad	CDS	52211	52648	GCA_001228845.1	CUFO01000009.1	GCA_001228845.1|CUFO01000009.1	GCA_001228845.1_CUFO01000009.1	GCA_001228845.1|CUFO01000009.1|provirus_39217_54864_65	438	1	0.308	11	GGAG/GAGG	GENOMAD.131910.VV	2.948e-69	230	0	0	0	1246	Caudoviricetes	NA	NA	COG5577	Spore coat protein CotF	GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad	GCA_001228845.1|CUFO01000009.1	65	24	12995	13432	MNLKRVKYPLIYHENKISEYTLLTEYNPKFINTKIKAITMQIEMMYHLNISHMTTNDVHGVVSISYPLEKLVIDIIGEKEKLKRFKTKANRNMQQLKQVIKRYTPVEQKEIMYYMQSNGSTIDYSLIERLQRDLYAYKHKVSVAT	GCA_001228845.1|CUFO01000009.1|provirus_39217_54864	GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad_CDS_0024	shell	direct	high	438	1.0	GCA_001228845.1_01677
GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad	genomad	CDS	52645	52983	GCA_001228845.1	CUFO01000009.1	GCA_001228845.1|CUFO01000009.1	GCA_001228845.1_CUFO01000009.1	GCA_001228845.1|CUFO01000009.1|provirus_39217_54864_66	339	1	0.313	11	None	GENOMAD.156435.VV	1.094e-47	166	0	0	0	1246	Caudoviricetes	NA	NA	PF11242;K01994;TIGR03879;COG1342	probable regulatory domain	GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad	GCA_001228845.1|CUFO01000009.1	66	25	13429	13767	MMYDKQAIKQFIMDYQKEKAPNVVSYDDTDIDDFFSLSDEVEPFELSENTGNQVFFNELDQLIYAVATRREYYIFFLLCEGKSINEIAKIFELSRERIRQLLNSLLDKLEEG	GCA_001228845.1|CUFO01000009.1|provirus_39217_54864	GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad_CDS_0025	shell	direct	high	339	1.0	GCA_001228845.1_01678
GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad	genomad	CDS	52985	53557	GCA_001228845.1	CUFO01000009.1	GCA_001228845.1|CUFO01000009.1	GCA_001228845.1_CUFO01000009.1	GCA_001228845.1|CUFO01000009.1|provirus_39217_54864_67	573	1	0.375	11	AGGAG	GENOMAD.168355.VP	9.726e-34	130	0	0	1	1246	Caudoviricetes	NA	NA	PF03592;COG3728;K07474	Phage terminase, small subunit	GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad	GCA_001228845.1|CUFO01000009.1	67	26	13769	14341	MSDLNPRQEKFISEYLKTLNVTQSAIKAGYSPHTASVQGSRLLKNEKVAKYIDEQRKKVIDEGVLSANELLHILSNAAVGDESEVREVVVKRGEFQRNPDTDKMNLVYNEHVEMVEIPIKPSDRLRARDMLGKYHKLFTERKEFTGDTPVIVNIGEWSEGDEEETQRELDKIKENYPDRTMIVDDIPLED	GCA_001228845.1|CUFO01000009.1|provirus_39217_54864	GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad_CDS_0026	shell	direct	high	573	1.0	GCA_001228845.1_01679
GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad	genomad	CDS	53612	53740	GCA_001228845.1	CUFO01000009.1	GCA_001228845.1|CUFO01000009.1	GCA_001228845.1_CUFO01000009.1	GCA_001228845.1|CUFO01000009.1|provirus_39217_54864_68	129	1	0.240	11	None	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad	GCA_001228845.1|CUFO01000009.1	68	27	14396	14524	MNYLLPSPETITFKILDGLVFGVLTVLLINWIIGFFNKYSQK	GCA_001228845.1|CUFO01000009.1|provirus_39217_54864	GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad_CDS_0027	.	unmatched_CDS	none	0	0	.
GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad	genomad	CDS	53881	54498	GCA_001228845.1	CUFO01000009.1	GCA_001228845.1|CUFO01000009.1	GCA_001228845.1_CUFO01000009.1	GCA_001228845.1|CUFO01000009.1|provirus_39217_54864_69	618	1	0.272	11	GGAG/GAGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad	GCA_001228845.1|CUFO01000009.1	69	28	14665	15282	MIQTIVTAAILYIATAVDLLVILLIFFARAKTRKEYRDIYVGQYLGSSILILVSLFLAFVLNYVPEKWILGLLGLIPIYLGIKVAIYDDCEGEKRAKKELNEKGLSKLVGTVAIVTIASCGADNIGLFVPYFVTLSVTNLLITLFVFLILIFFLVLTAQKLANIPGVGEIVEKFSRWIMAVIYIALGLFIIIENDTIQTILGFIF	GCA_001228845.1|CUFO01000009.1|provirus_39217_54864	GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad_CDS_0028	shell	direct	high	618	1.0	GCA_001228845.1_01680
GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad	genomad	CDS	54517	54864	GCA_001228845.1	CUFO01000009.1	GCA_001228845.1|CUFO01000009.1	GCA_001228845.1_CUFO01000009.1	GCA_001228845.1|CUFO01000009.1|provirus_39217_54864_70	348	1	0.250	11	GGA/GAG/AGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad	GCA_001228845.1|CUFO01000009.1	70	29	15301	15648	MSYENTCDVICVHEDKVNNALSFLEDDKSKKLLNILEKICDEKKLKIILSLIKEDELCVCDISLILKMSVASTSHHLRLLYKNDVLDFYKEGKMAYYFIKDDEIREFFSKNQEGF	GCA_001228845.1|CUFO01000009.1|provirus_39217_54864	GCA_001228845.1|CUFO01000009.1@region_39217_54864@tool_genomad_CDS_0029	shell	direct	high	348	1.0	GCA_001228845.1_01681