core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_001239225.1|CUEO01000001.1@region_115749_128096@tool_cenote	cenote	CDS	115748	116362	GCA_001239225.1	CUEO01000001.1	GCA_001239225.1|CUEO01000001.1	GCA_001239225.1_CUEO01000001.1	GCA_001239225.1|CUEO01000001.1	GCA_001239225_1_1	GCA_001239225_1_1@C9	1	615	GCA_001239225_1_1_107	GCA_001239225_1_1_107	-	833122	.	.	hypothetical protein	MYESVSFGGSNMEHQQHVEELVKILKNECRTSFKFHGEVAMQLFLSDNFILPSRVDICVERKQLVEVLKVIPSTYHLNYYDKNNKLMNRDQLSVPEIAHIDITFNEKLLMNIFIYDVVNEEWIFRLDSNIRIPKNSIYFHSLTWGVDYIKPEIVLMYDLLDNQNYHQLPNYKMVLDSLSYYQFVILKVVVGEQRINEALAHNKL*	.	hypothetical_protein	C9	12348	115748	128096	GCA_001239225.1|CUEO01000001.1@region_115749_128096@tool_cenote_CDS_0001	persistent	direct	high	614	0.998	GCA_001239225.1_00113
GCA_001239225.1|CUEO01000001.1@region_115749_128096@tool_cenote	cenote	CDS	116616	117473	GCA_001239225.1	CUEO01000001.1	GCA_001239225.1|CUEO01000001.1	GCA_001239225.1_CUEO01000001.1	GCA_001239225.1|CUEO01000001.1	GCA_001239225_1_1	GCA_001239225_1_1@C9	869	1726	GCA_001239225_1_1_108	GCA_001239225_1_1_108	+	833122	.	.	hypothetical protein	MTLTIILIVIIVILILAFILNQRYMQDRVDTEVYARNQMVTKNATLSNENLELKNQMLSSNNDVSSHAKRNAKHVLTSILDKYKDEGKLKYYDIITTSNLATKHPFFEYARTFDYIVVSDVGLINIDVKNWKQKTFYHFDAPVDDDMQVDTNDVNQIVGHYVSKQYHSQFDSPRSEIYTFVEKIQNNRVIYEFYDHDPYEQAAINSKVLKDGIENHFNHKVQSIGVVYFSDGSVNIIEGSEERAQYVDTVSTKSSLEAVIKNAIDLSKHPLSEDQVTKIVNSFNN*	.	hypothetical_protein	C9	12348	115748	128096	GCA_001239225.1|CUEO01000001.1@region_115749_128096@tool_cenote_CDS_0002	persistent	direct	high	857	0.999	GCA_001239225.1_00114
GCA_001239225.1|CUEO01000001.1@region_115749_128096@tool_cenote	cenote	CDS	117536	118072	GCA_001239225.1	CUEO01000001.1	GCA_001239225.1|CUEO01000001.1	GCA_001239225.1_CUEO01000001.1	GCA_001239225.1|CUEO01000001.1	GCA_001239225_1_1	GCA_001239225_1_1@C9	1789	2325	GCA_001239225_1_1_109	GCA_001239225_1_1_109	-	833122	.	PDB:1RKN_A	Thermonuclease	MNSKKSLSIIVLAVLVVGVLAFQFINHTGPFKNNGSQSSNSTNIKDKEKVHVDRVVDGDTFVATNSEGKEIKVRLIGIDTPETVKPNTPVQPYGKEASNYSKQHLNGKDVYLEYDKEKEDRYGRTLAYVWLDENTMYNEELVKNGLAREKYFSPNGKYRHLFEKDEQQAKKDKVNLWS*	common_virus_hmm	common_virus	C9	12348	115748	128096	GCA_001239225.1|CUEO01000001.1@region_115749_128096@tool_cenote_CDS_0003	persistent	direct	high	536	0.998	GCA_001239225.1_00115
GCA_001239225.1|CUEO01000001.1@region_115749_128096@tool_cenote	cenote	CDS	118240	118431	GCA_001239225.1	CUEO01000001.1	GCA_001239225.1|CUEO01000001.1	GCA_001239225.1_CUEO01000001.1	GCA_001239225.1|CUEO01000001.1	GCA_001239225_1_1	GCA_001239225_1_1@C9	2493	2684	GCA_001239225_1_1_110	GCA_001239225_1_1_110	+	833122	.	.	hypothetical protein	MSEKNENLVTVIAVIIAIIVGVILQIVYKLPIIVSVVVAVLLGVLVGFIAYIIQSIIRKRKNK*	.	hypothetical_protein	C9	12348	115748	128096	GCA_001239225.1|CUEO01000001.1@region_115749_128096@tool_cenote_CDS_0004	persistent	direct	high	191	0.995	GCA_001239225.1_00116
GCA_001239225.1|CUEO01000001.1@region_115749_128096@tool_cenote	cenote	CDS	118672	118851	GCA_001239225.1	CUEO01000001.1	GCA_001239225.1|CUEO01000001.1	GCA_001239225.1_CUEO01000001.1	GCA_001239225.1|CUEO01000001.1	GCA_001239225_1_1	GCA_001239225_1_1@C9	2925	3104	GCA_001239225_1_1_111	GCA_001239225_1_1_111	+	833122	.	PF17412.2	Family of unknown function	MEILDVIIDNHGLIYKVQTQNGHVFEHTLAKDTPPDKVAQVLRLLATHVDNLETQKRDN*	hhsuite_tools	hypothetical_protein	C9	12348	115748	128096	GCA_001239225.1|CUEO01000001.1@region_115749_128096@tool_cenote_CDS_0005	persistent	direct	high	179	0.994	GCA_001239225.1_00117
GCA_001239225.1|CUEO01000001.1@region_115749_128096@tool_cenote	cenote	CDS	119005	119607	GCA_001239225.1	CUEO01000001.1	GCA_001239225.1|CUEO01000001.1	GCA_001239225.1_CUEO01000001.1	GCA_001239225.1|CUEO01000001.1	GCA_001239225_1_1	GCA_001239225_1_1@C9	3258	3860	GCA_001239225_1_1_112	GCA_001239225_1_1_112	-	833122	.	cd19930	phosphoacceptor receiver (REC) domain of DesR and similar proteins. This group is composed of Bacillus subtilis DesR, Streptococcus pneumoniae response regulator spr1814, and similar proteins, all containing an N-terminal REC domain and a C-terminal LuxR family helix-turn-helix (HTH) DNA-binding output domain. DesR is a response regulator that, together with its cognate sensor kinase DesK, comprises a two-component regulatory system that controls membrane fluidity. Phosphorylation of the REC domain of DesR is allosterically coupled to two distinct exposed surfaces of the protein, controlling noncanonical dimerization/tetramerization, cooperative activation, and DesK binding. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	MISIVIAEDQNMLRKAMIQLIEFHDDLKVIDDFDNGIDALQSINSQQPDIAILDIEIPGMTGLEVLSQLRENKINTKVIIVTTFKRPGYFERAVANDVDAYVLKERSVDDLVATIHKVLNGEKEYSTSLMTSLFKEANPLTHKEQVVLREIGEGLSNKEVADKLYLSNGTVRNYTSNIIDKLEAENRFDAWKKANEKGWI*	mmseqs_cdd	nonviral_gene	C9	12348	115748	128096	GCA_001239225.1|CUEO01000001.1@region_115749_128096@tool_cenote_CDS_0006	persistent	direct	high	602	0.998	GCA_001239225.1_00118
GCA_001239225.1|CUEO01000001.1@region_115749_128096@tool_cenote	cenote	CDS	119604	120701	GCA_001239225.1	CUEO01000001.1	GCA_001239225.1|CUEO01000001.1	GCA_001239225.1_CUEO01000001.1	GCA_001239225.1|CUEO01000001.1	GCA_001239225_1_1	GCA_001239225_1_1@C9	3857	4954	GCA_001239225_1_1_113	GCA_001239225_1_1_113	-	833122	.	COG4585	Signal transduction histidine kinase  [Signal transduction mechanisms]. 	MKRSLGAKMGEISSLIYLIFPYYGLYLTWQDDSFLLNLFIVIIFTFAYASLILFHEALSHRINLILFFIHFLAIIYFVYAYNPTLSLFFFFSAFAIPFLFKRGVKSIEFMLLISSMITCIIITIIQTNHFYVVSIIIYYIVILAILFGDFKIMKERQYRQQIEEKNKYINILIAEQERNRIGQDLHDTLGHVFASLSVKSELAAKLIDKDPIAAKKEILNINEISKDTLEKVRHIIENLKVQTFEEEIQSIEQILKDANIHFNFENIRGASSLNPTKQTILSMILREAVNNVIKHAEASEINGKIESYDNGIKLIISDNGIGLKQPSEVKLKSINDRVALLSGTVNITSKQGTTIDIMIPREGVQ*	mmseqs_cdd	nonviral_gene	C9	12348	115748	128096	GCA_001239225.1|CUEO01000001.1@region_115749_128096@tool_cenote_CDS_0007	persistent	direct	high	1097	0.999	GCA_001239225.1_00119
GCA_001239225.1|CUEO01000001.1@region_115749_128096@tool_cenote	cenote	CDS	120702	121439	GCA_001239225.1	CUEO01000001.1	GCA_001239225.1|CUEO01000001.1	GCA_001239225.1_CUEO01000001.1	GCA_001239225.1|CUEO01000001.1	GCA_001239225_1_1	GCA_001239225_1_1@C9	4955	5692	GCA_001239225_1_1_114	GCA_001239225_1_1_114	-	833122	.	COG0842	ABC-type multidrug transport system, permease component [Defense mechanisms]. 	MTNIITLLDIEYKLLFRRKLSSFMAFIFPLAFYLLFTSLIDMPADAKKVFYKEYMYSMTVFSLMGFCLMQFPLEIIEERNSGWYKRLISTPITVLNYYLAKIIKTMTLFLASILLLFSVAHFYKGVDLSASEWILSGVSLWLGASMFLTLGLIITQFSETQKASSVANLFNIVLAIIGGLWFPVSTFPDWMQIIAKLTPTYHLRHLALEFGKGNGFNVQSFIILGIYSIIFLIIALLINKRKEVE*	mmseqs_cdd	nonviral_gene	C9	12348	115748	128096	GCA_001239225.1|CUEO01000001.1@region_115749_128096@tool_cenote_CDS_0008	persistent	direct	high	737	0.999	GCA_001239225.1_00120
GCA_001239225.1|CUEO01000001.1@region_115749_128096@tool_cenote	cenote	CDS	121443	122309	GCA_001239225.1	CUEO01000001.1	GCA_001239225.1|CUEO01000001.1	GCA_001239225.1_CUEO01000001.1	GCA_001239225.1|CUEO01000001.1	GCA_001239225_1_1	GCA_001239225_1_1@C9	5696	6562	GCA_001239225_1_1_115	GCA_001239225_1_1_115	-	833122	.	COG1131	ABC-type multidrug transport system, ATPase component [Defense mechanisms]. 	MIYINQLKKSFGKKTVLNNISLDIEEGKCTALIGKNGAGKSTLIDILIGHKHANSGTVEDKFNLISSHNMGILFQTTNLPKLIKVKELYHLYQQLYTNPMTFNEFQKLTQFSNLQLEQYANKLSGGQKRLLDFVLTLIGKPQFLILDEPTTSMDIETREHFWNLIEQLKEDGITILYTSHYIEEVERMADKVVYLEQGSIKINDTPHNILFSQNNSIIEIMTFTEEQYQILSETYDIEITNGNLKIQTENVEAVITNLIKINVDLNQITIYKKSLLELMFSKEERVVQ*	mmseqs_cdd	nonviral_gene	C9	12348	115748	128096	GCA_001239225.1|CUEO01000001.1@region_115749_128096@tool_cenote_CDS_0009	persistent	direct	high	866	0.999	GCA_001239225.1_00121
GCA_001239225.1|CUEO01000001.1@region_115749_128096@tool_cenote	cenote	CDS	122499	123980	GCA_001239225.1	CUEO01000001.1	GCA_001239225.1|CUEO01000001.1	GCA_001239225.1_CUEO01000001.1	GCA_001239225.1|CUEO01000001.1	GCA_001239225_1_1	GCA_001239225_1_1@C9	6752	8233	GCA_001239225_1_1_116	GCA_001239225_1_1_116	-	833122	.	PDB:2ZE9_A	Phospholipase-D	MKFMFGPDLGTVFTILLALGFVINLVLAFIIIFLERNRRSASSTWAWLFVLFVLPLIGFILYLFFGRTVSKRKMEKNNGKELDTFKSVIKEQVKQFDAHNYQTDNQQVTKHRDLIRMLLNKQDAFLTEDNHIDLFTDGHKLYEKVIEDIYNAKNYIHLEYYTFELDGLGHRILDALETKLKEGLEVKILYDDVGSKKVRMSKFHHFKSLGGEVEAFFASKFPLINFRMNNRNHRKIIVIDGQVGYIGGFNIGDDYLGLGKLGYWRDTHIRVEGDVIDALQIRFILDWNSQAHRPQFEYDDKYFPKKRQHKGKSAIQIASSGPAFDLHQIEYGYTKMIMSAKKSIYMQSPYFIPDQSYINALKMAANAGVDVHLMIPCKPDHPFVYWATFSNAAELLSSGVKIYTYQNGFIHSKVMMIDDEICSVGSANMDYRSFALNFEVNAFIYDKEIAKKIRAAYEEDIEKSKLLTLEEYKKRSLSIKVKEDIAKLVSPIL*	common_virus_hmm	common_virus	C9	12348	115748	128096	GCA_001239225.1|CUEO01000001.1@region_115749_128096@tool_cenote_CDS_0010	persistent	direct	high	1481	0.999	GCA_001239225.1_00122
GCA_001239225.1|CUEO01000001.1@region_115749_128096@tool_cenote	cenote	CDS	124019	124213	GCA_001239225.1	CUEO01000001.1	GCA_001239225.1|CUEO01000001.1	GCA_001239225.1_CUEO01000001.1	GCA_001239225.1|CUEO01000001.1	GCA_001239225_1_1	GCA_001239225_1_1@C9	8272	8466	GCA_001239225_1_1_117	GCA_001239225_1_1_117	-	833122	.	.	hypothetical protein	MSKIKFKKIQEKTLDELEKEINMYLESDEGSQFEVLNISIDKIEERKFPNNEEVLNAILILNAK*	.	hypothetical_protein	C9	12348	115748	128096	GCA_001239225.1|CUEO01000001.1@region_115749_128096@tool_cenote_CDS_0011	persistent	direct	high	194	0.995	GCA_001239225.1_00123
GCA_001239225.1|CUEO01000001.1@region_115749_128096@tool_cenote	cenote	CDS	124426	125451	GCA_001239225.1	CUEO01000001.1	GCA_001239225.1|CUEO01000001.1	GCA_001239225.1_CUEO01000001.1	GCA_001239225.1|CUEO01000001.1	GCA_001239225_1_1	GCA_001239225_1_1@C9	8679	9704	GCA_001239225_1_1_118	GCA_001239225_1_1_118	+	833122	.	COG2008	Threonine aldolase [Amino acid transport and metabolism]. 	MISFENDYLEGAHENVLQRLFDTNLIQASGYGDDQFSKQAAEHIKSVINCPEATVRFLVGGTQTNQVVINSVLEPYEGVISADTGHVAVHEGGAIEFSGHKVLTVPSHEGKIRPNEVNAYLDTFYNDFKREHMVFPGMVYISHPTEYGTLYSKEELKNLADVCKEHQVPLFMDGARLGYGLMSDQSDLTFEDIAKYCDIFYIGGTKIGALCGEAIVFTKNNEPKHFTTRIKQHGALLAKGRLVGVQFLELFTNNLYLDISRHAINMANKMKKGFLEKGYQLYFDSPTNQQFFVLSEEKIKELKEKVKFTIWEKYDDNHRVVRFATSWATTEENVDKLLELI*	mmseqs_cdd	nonviral_gene	C9	12348	115748	128096	GCA_001239225.1|CUEO01000001.1@region_115749_128096@tool_cenote_CDS_0012	persistent	direct	high	1025	0.999	GCA_001239225.1_00124
GCA_001239225.1|CUEO01000001.1@region_115749_128096@tool_cenote	cenote	CDS	125751	126029	GCA_001239225.1	CUEO01000001.1	GCA_001239225.1|CUEO01000001.1	GCA_001239225.1_CUEO01000001.1	GCA_001239225.1|CUEO01000001.1	GCA_001239225_1_1	GCA_001239225_1_1@C9	10004	10282	GCA_001239225_1_1_119	GCA_001239225_1_1_119	-	833122	.	.	hypothetical protein	MSNITIHIDETFMNKLIEYKLENLLKNYERQYASVGIKDLVTLTGLSKSTLQNKIVCEPEIVEVTRRIGSRVIYLYPQVLEAYQKVINRIGV*	.	hypothetical_protein	C9	12348	115748	128096	GCA_001239225.1|CUEO01000001.1@region_115749_128096@tool_cenote_CDS_0013	shell	direct	high	278	0.996	GCA_001239225.1_00125
GCA_001239225.1|CUEO01000001.1@region_115749_128096@tool_cenote	cenote	CDS	126453	126830	GCA_001239225.1	CUEO01000001.1	GCA_001239225.1|CUEO01000001.1	GCA_001239225.1_CUEO01000001.1	GCA_001239225.1|CUEO01000001.1	GCA_001239225_1_1	GCA_001239225_1_1@C9	10706	11083	GCA_001239225_1_1_120	GCA_001239225_1_1_120	-	833122	.	PDB:6B0X_d	capsid-scaffolding-protein	MENNQSNITEEAKSNEKLETPNEQAQHNEKTFSQEEVSQMIKDRLAREKRKSDERIKDAIQEAEKLAKMNKDQKSQYEIEKLMKENEALKAEKALSQMRNETRSMLSESGVENFDDQIVDIIGKP*	hallmark_hmm	common_virus	C9	12348	115748	128096	GCA_001239225.1|CUEO01000001.1@region_115749_128096@tool_cenote_CDS_0014	shell	direct	high	377	0.997	GCA_001239225.1_00126
GCA_001239225.1|CUEO01000001.1@region_115749_128096@tool_cenote	cenote	CDS	126988	127230	GCA_001239225.1	CUEO01000001.1	GCA_001239225.1|CUEO01000001.1	GCA_001239225.1_CUEO01000001.1	GCA_001239225.1|CUEO01000001.1	GCA_001239225_1_1	GCA_001239225_1_1@C9	11241	11483	GCA_001239225_1_1_121	GCA_001239225_1_1_121	-	833122	.	.	hypothetical protein	MKKLKEDNQVIVYEYIPQDKIENGKGKITVNKLDSKVIDYNLSKIEIEKNILAYRNKTFFAIRTFIENKEFPENHLVAWY*	.	hypothetical_protein	C9	12348	115748	128096	GCA_001239225.1|CUEO01000001.1@region_115749_128096@tool_cenote_CDS_0015	cloud	direct	high	242	0.996	GCA_001239225.1_00127
GCA_001239225.1|CUEO01000001.1@region_115749_128096@tool_cenote	cenote	CDS	127250	128095	GCA_001239225.1	CUEO01000001.1	GCA_001239225.1|CUEO01000001.1	GCA_001239225.1_CUEO01000001.1	GCA_001239225.1|CUEO01000001.1	GCA_001239225_1_1	GCA_001239225_1_1@C9	11503	12348	GCA_001239225_1_1_122	GCA_001239225_1_1_122	-	833122	.	PFAM:PF06152.10	minor-capsid-protein	MALVQKEVERTASNVLLRGRHPNEYVSNFKKQTNSTTYNASRLLVTESARVQAESQKLTYLKDLGEDGEYKYVAKIDKKTSKICHTLNGKVFKVKDMVPGINAPPMHPWCRSTTVPHVGSWRDKFFKEREGKYQVENKKNEHEKITRPSGALNNLNDPYQEKRDNHAIIYYQSVRKRNKNIEIDKISKNTNLNKNLVKRAYEHLFENKYRLNNGIYNFYPDYNIAVSWQRLREGKNIKEQDLILLRHEALEHYLMNKYNYNYREAHEIVERKYDFASYIEK*	hallmark_hmm	common_virus	C9	12348	115748	128096	GCA_001239225.1|CUEO01000001.1@region_115749_128096@tool_cenote_CDS_0016	shell	direct	high	845	0.999	GCA_001239225.1_00128