core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_001402715.1|LLVU01000010.1@region_49497_57154@tool_cenote	cenote	CDS	49496	49771	GCA_001402715.1	LLVU01000010.1	GCA_001402715.1|LLVU01000010.1	GCA_001402715.1_LLVU01000010.1	GCA_001402715.1|LLVU01000010.1	GCA_001402715_1_10	GCA_001402715_1_10@C4	1	276	GCA_001402715_1_10_34	GCA_001402715_1_10_34	+	67515	.	.	hypothetical protein	MRDTLNKSLEVLIWIATTLMVVGACYLGAMVIRLSGVPGVPDPSWVMVFGFLMIIFGVTMSFVFAGICFQIMDIRTFTKHAAFALRMPQKR*	.	hypothetical_protein	C4	7658	49496	57154	GCA_001402715.1|LLVU01000010.1@region_49497_57154@tool_cenote_CDS_0001	shell	direct	high	275	0.996	GCA_001402715.1_01281
GCA_001402715.1|LLVU01000010.1@region_49497_57154@tool_cenote	cenote	CDS	49786	51138	GCA_001402715.1	LLVU01000010.1	GCA_001402715.1|LLVU01000010.1	GCA_001402715.1_LLVU01000010.1	GCA_001402715.1|LLVU01000010.1	GCA_001402715_1_10	GCA_001402715_1_10@C4	291	1643	GCA_001402715_1_10_35	GCA_001402715_1_10_35	+	67515	.	COG0515	Serine/threonine protein kinase  [Signal transduction mechanisms]. 	MSAGTQVLKPGSVVQDSYRIESLLGEGGMGATYRAINLATGHPVAVKVMSPAFAANRQAVELFRRESTHLRAVQHEAIIRYETTLQDREGRLFLVMEFVDGKPLKHYLARGQRLGSADVLGLGLRLAQGLDCIHALGLVHRDIAPDNILIPGDNVKKAKLIDFGLASDTIGTDKSIIGTGFAGKLDFCAPEQFGLFGNRVGAATDCYALGLVLMKVAGLAVPGEGKGLAAIEDRRDDIGIDGTRISEPLCRVLERLLVADPAGRATDLVPLFEQALLDTAHRLDKTPAAKAPPPSAVPPLPPAVEPAAGKANARAGLLIALGLVVLLALGGAGFALMGQHGSARSDAVALAGQALQDDDPMARVDALIATGGADNLNAALGSLMKLANDPVQPLEIRREATLAIARMYDPATHDPARSPFAAPDPAAAQRFYQKAAALTEDAAAQARVSP*	mmseqs_cdd	nonviral_gene	C4	7658	49496	57154	GCA_001402715.1|LLVU01000010.1@region_49497_57154@tool_cenote_CDS_0002	shell	direct	high	1352	0.999	GCA_001402715.1_01282
GCA_001402715.1|LLVU01000010.1@region_49497_57154@tool_cenote	cenote	CDS	51135	53177	GCA_001402715.1	LLVU01000010.1	GCA_001402715.1|LLVU01000010.1	GCA_001402715.1_LLVU01000010.1	GCA_001402715.1|LLVU01000010.1	GCA_001402715_1_10	GCA_001402715_1_10@C4	1640	3682	GCA_001402715_1_10_36	GCA_001402715_1_10_36	+	67515	.	PF17643.1	Type VI secretion system, TssR	MTLLRFSALIRCALLGLGLPLCSLALACPSRAETPLLMEGKTSLHQRVLIREITPRHSAPDQPLPDRLKPLQAFYVYAREGDWLKVGAEETGADLFWVRASATTDWKQNIVATLEGSENLGRLLFFDGYDSAYGVVEAEDPALAAAALRAEAEAAEAGGPRSERLVALGPRTTVDMRRNLYVMPILSSEEAVFENGNFVNLLQVAVARANPDRAEAPSASAAAPAPLTAADEVPLEDGEAPAPAAPGSGYRAGVVFVVDTTISMQPYIDATRAALTEIYAQAGRSGASDKFAFSLIGFRDDAAAVPGLDYQTRTFVTLQDGASPEKFLAGMEEMTEARVSTRSFREDSYAGIDQAISAIDWTGFGARFIVLVTDAGPREAGDPLSATGLSAEGLSALARERARAAIMVMHLRTPKGAKDHATAEAAYRRLAAQPNGDPLYFPIEQGTPEIYRQKAHDVGAFIVDQVTRFQDGASNLPDAPGVAAEPAPADAGLAAVASVGRTMHLAWLGSQKGEKAPDVFEAVVADRDFDRPGLKPLSIRVLISKSELSDLQEALKIIVQSAEDNVIDPDKFFAQVLGAAADMSRSPDKVKRRADASLADVTAISEYLEGLPYKSRIMAITNDDWLRLSISEQQTVVNELHEKIERYSRYNEATDAWVDYLGTGAGAAALVYPMRLDDLP*	hhsuite_tools	hypothetical_protein	C4	7658	49496	57154	GCA_001402715.1|LLVU01000010.1@region_49497_57154@tool_cenote_CDS_0003	shell	direct	high	2042	1.0	GCA_001402715.1_01283
GCA_001402715.1|LLVU01000010.1@region_49497_57154@tool_cenote	cenote	CDS	52993	53817	GCA_001402715.1	LLVU01000010.1	GCA_001402715.1|LLVU01000010.1	GCA_001402715.1_LLVU01000010.1	GCA_001402715.1|LLVU01000010.1	GCA_001402715_1_10	GCA_001402715_1_10@C4	3498	4322	GCA_001402715_1_10_37	GCA_001402715_1_10_37	-	67515	.	6TE9_F	Adaptor protein Rcc01688, Portal protein	MLDPALAFQTAVRAALITAPEVLAHVQPANIRAGSIRPERLPSVVLGDARTEFLGCAAGSQRLARVFVTLHIWAQEDGADTARQIGAAIHAALEFGPKDTAEISLDDWAQPCLVWLRDPQPEGVWRSPACVTHAAFRFGRLACDGKAVEVFPRPRACGQCRGSGGVAPASDGGSNVFEKVRRYRCNCDRGFGLGALPGLAGAALAARASPARRLRANRQAASDRPAPRLRPRCPDNPPRHRWPRCNGCSARSFHAARSPRSAVRKSTDEASRRW*	hhsuite_tools	hypothetical_protein	C4	7658	49496	57154	GCA_001402715.1|LLVU01000010.1@region_49497_57154@tool_cenote_CDS_0004	persistent	direct	high	824	0.999	GCA_001402715.1_01284
GCA_001402715.1|LLVU01000010.1@region_49497_57154@tool_cenote	cenote	CDS	53810	54289	GCA_001402715.1	LLVU01000010.1	GCA_001402715.1|LLVU01000010.1	GCA_001402715.1_LLVU01000010.1	GCA_001402715.1|LLVU01000010.1	GCA_001402715_1_10	GCA_001402715_1_10@C4	4315	4794	GCA_001402715_1_10_38	GCA_001402715_1_10_38	-	67515	.	PFAM:PF04883.11	type-I-neck-protein	MAELDLNAQAARLARRLEAIPATVLESLRPAVVQAAEDLAATARSLAPEAEGDLKASIVVTPPGAETPAYAEGGGRRIAGGNQALITVGNPEQRHGHLFEFGTKPHVNAGQFAGTQHPGTAAQPFLLPAARLTEDRARRRIARAIGQAVRKAAQGGDHA*	hallmark_hmm	common_virus	C4	7658	49496	57154	GCA_001402715.1|LLVU01000010.1@region_49497_57154@tool_cenote_CDS_0005	persistent	direct	high	479	0.998	GCA_001402715.1_01285
GCA_001402715.1|LLVU01000010.1@region_49497_57154@tool_cenote	cenote	CDS	54291	54575	GCA_001402715.1	LLVU01000010.1	GCA_001402715.1|LLVU01000010.1	GCA_001402715.1_LLVU01000010.1	GCA_001402715.1|LLVU01000010.1	GCA_001402715_1_10	GCA_001402715_1_10@C4	4796	5080	GCA_001402715_1_10_39	GCA_001402715_1_10_39	-	67515	.	CDD:cd08054	Head-Tail-Connector-Protein	MPFVTVPELKAQLNIDHDLDDALLSHQIDAAEAHVASFIGAPLTEPLPAAIRQAVLMLAAFWYEAREAAQAGGAPYAVPFGVHDLLQPHRVWVV*	hallmark_hmm	common_virus	C4	7658	49496	57154	GCA_001402715.1|LLVU01000010.1@region_49497_57154@tool_cenote_CDS_0006	persistent	direct	high	284	0.996	GCA_001402715.1_01286
GCA_001402715.1|LLVU01000010.1@region_49497_57154@tool_cenote	cenote	CDS	54746	55531	GCA_001402715.1	LLVU01000010.1	GCA_001402715.1|LLVU01000010.1	GCA_001402715.1_LLVU01000010.1	GCA_001402715.1|LLVU01000010.1	GCA_001402715_1_10	GCA_001402715_1_10@C4	5251	6036	GCA_001402715_1_10_40	GCA_001402715_1_10_40	-	67515	.	.	hypothetical protein	MSLVSFAPPGLFKFCAPEHNIFNGCNTIRVGTLWGFRDEENAHLRDEGEGTLDYKIRFPDLTPVSNEWISEIGGDIARNVHIGQMQFSNGIFSIREASIAASYANCWVFCVSTTSDAAGNISCAHNSKWTIPGEKVTDFATYIAQLLWESVDLLDLPATIRDTKSLQEIQRGLSLNAEMRPVTYRDRVIIATCEEDFPVSEVRALKESIPFIKPRSFESEREFRFLFHLSYQGKRISIENRPKILKLRPIDSLAQEWKPRA*	.	hypothetical_protein	C4	7658	49496	57154	GCA_001402715.1|LLVU01000010.1@region_49497_57154@tool_cenote_CDS_0007	shell	direct	high	785	0.999	GCA_001402715.1_01287
GCA_001402715.1|LLVU01000010.1@region_49497_57154@tool_cenote	cenote	CDS	55575	55871	GCA_001402715.1	LLVU01000010.1	GCA_001402715.1|LLVU01000010.1	GCA_001402715.1_LLVU01000010.1	GCA_001402715.1|LLVU01000010.1	GCA_001402715_1_10	GCA_001402715_1_10@C4	6080	6376	GCA_001402715_1_10_41	GCA_001402715_1_10_41	-	67515	.	.	hypothetical protein	MFEAPARRNPERNLWLEVLYRTVEDATKGPRHVPKPADKALIMREARDYLTRPSRDLAMVCALAGVDMGAVIARMRENLSKDLRSERPRAKIVDSRKI*	.	hypothetical_protein	C4	7658	49496	57154	GCA_001402715.1|LLVU01000010.1@region_49497_57154@tool_cenote_CDS_0008	persistent	direct	high	296	0.997	GCA_001402715.1_01288
GCA_001402715.1|LLVU01000010.1@region_49497_57154@tool_cenote	cenote	CDS	56367	56783	GCA_001402715.1	LLVU01000010.1	GCA_001402715.1|LLVU01000010.1	GCA_001402715.1_LLVU01000010.1	GCA_001402715.1|LLVU01000010.1	GCA_001402715_1_10	GCA_001402715_1_10@C4	6872	7288	GCA_001402715_1_10_42	GCA_001402715_1_10_42	+	67515	.	.	hypothetical protein	MIARFVRSEIAAGTIPATVPGVVVQRTGAEIIITANGFDAAVPMDQGPTLADVLKGAATLSVDPERKKQWLEGLAALSGIQVKRAGNGLKLVSGLTKREFPLALDVAVDLGEAIARAAEQERGDAATPPRPMKVYAII*	.	hypothetical_protein	C4	7658	49496	57154	GCA_001402715.1|LLVU01000010.1@region_49497_57154@tool_cenote_CDS_0009	shell	direct	high	417	1.0	GCA_001402715.1_01289
GCA_001402715.1|LLVU01000010.1@region_49497_57154@tool_cenote	cenote	CDS	56788	57153	GCA_001402715.1	LLVU01000010.1	GCA_001402715.1|LLVU01000010.1	GCA_001402715.1_LLVU01000010.1	GCA_001402715.1|LLVU01000010.1	GCA_001402715_1_10	GCA_001402715_1_10@C4	7293	7658	GCA_001402715_1_10_43	GCA_001402715_1_10_43	+	67515	.	.	hypothetical protein	MTANNERQAPAWKTAKLEALLADIKAENERKRAERNARRWKEERDPVAYEKQKKDQRATYAARKGEAELRRAEAEAKVARIKRDLVLKSLERDEADDALAQRPPDLLEDVLAAVERRLEAA*	.	hypothetical_protein	C4	7658	49496	57154	GCA_001402715.1|LLVU01000010.1@region_49497_57154@tool_cenote_CDS_0010	.	unmatched_CDS	none	0	0	.
GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote	cenote	CDS	32524	32772	GCA_001402715.1	LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715.1_LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715_1_11	GCA_001402715_1_11@C1	1	249	GCA_001402715_1_11_35	GCA_001402715_1_11_35	+	112450	.	COG3750	Uncharacterized conserved protein, UPF0335 family [Function unknown]. 	MSNDAYTVAADELRQFIEQYEHLEAEKKDITEQQKDIMSEAKARGYDTKVIKKIIAMRKRDKNDLAEEEAILDIYKAALGMS*	mmseqs_cdd	nonviral_gene	C1	39559	32524	72083	GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote_CDS_0001	persistent	direct	high	248	0.996	GCA_001402715.1_01334
GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote	cenote	CDS	32788	33675	GCA_001402715.1	LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715.1_LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715_1_11	GCA_001402715_1_11@C1	265	1152	GCA_001402715_1_11_36	GCA_001402715_1_11_36	-	112450	.	.	hypothetical protein	MDLVFHLGAHATDDERLVRTLATNPEAMTAAQSHAPAPAAYRMALRDALIGLKGQPADAATQDRLRTACLRGARGPVERLVFSYENFLALPERAIGASGLYPAAADKLVPLANLFPQDRTEFHLGLLDPALLLVALAARQPGRDFSELLCGHAPEDLRWGPVVARMAEAAGRVGAKLVLWCNEDLPLLFPEVLRRMGGLPEAGALMGEYGLAEALMQPEGARRLRAYLASHPPQTAEQRRKVLIAFLEKFARPEALVADVPLPGFTADLVAEIAARYAADLADMARLPGVTLITP*	.	hypothetical_protein	C1	39559	32524	72083	GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote_CDS_0002	persistent	direct	high	887	0.999	GCA_001402715.1_01335
GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote	cenote	CDS	33969	35633	GCA_001402715.1	LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715.1_LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715_1_11	GCA_001402715_1_11@C1	1446	3110	GCA_001402715_1_11_37	GCA_001402715_1_11_37	+	112450	.	COG1252	NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]. 	MVTRIVVLGGGFGGMYTARALARRLGRKAEIELINAENYFVFQPLLPEVGAGSIMPAHAVSPLRFLLKGVQVRKAVVDSVDFERKVVTVFQGIQRRPTEVPYDHLVIALGQGTDFSRMPGLEEHALKMKTLEDARRLREHVIEQLEHAQVTALPDTKRGALTFTVVGGGFSGVETVGEMKELLDRSLPFYSNIDPSEVRVLLVEYAPRILNEMPKELADYATKHLLGHGIELKLGTGVRSATHRQLVTSAGEVIDTRTIVATIGNAPLPVILRMGLPLEKGRVAVDRCLRVKGRTDVWALGDCALIPLKDDATERNDFAPPTAQFAVREAKRVAANITAVLKGRAPGVFAYSSRGALASLGAKRGVADIFGRNITGFPAWFIWRSYYLALLPGIGTRIRVMINWSLDLLGARSLVQLRTYQKPPMRHVYFRAGDRIYQAGDRSDGFYTVISGAVQMVRTDPESGEMTTRVIGPGGHFGERLILGATRRKTSVNAIEDTKVLVMNRAEFLMLVESFEAFRDYFRPYMDKHGVSLPGTAGPEPKAEPKEEPQRPGA*	mmseqs_cdd	nonviral_gene	C1	39559	32524	72083	GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote_CDS_0003	persistent	direct	high	1664	0.999	GCA_001402715.1_01337
GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote	cenote	CDS	36109	37317	GCA_001402715.1	LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715.1_LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715_1_11	GCA_001402715_1_11@C1	3586	4794	GCA_001402715_1_11_38	GCA_001402715_1_11_38	+	112450	.	CDD:cd00801	P4-integrase	MGARDKLTAVKIRAAAPGRYGDGAGLYLDRTEDGGKWLYRYTIAGRRRDMGLGSLDAVTLAQARRERDRWAAVLASGRDPISERAREREAAATREDPSLSDLVDTVFGAIKHTLKGEGEAGRWMSPLRVHVLPKIGTRPASSLRTADFVRVLQPIWRTKPTVAEKAYSRLNLCFKKGKRIGYAVDSDTLAAARELLGDLHIEPEHIAATRWQDAPALFTRLAGDTSGLMCLRLLLLTAVRGDAARGARFNEIDGSLWIVPKERVKGRLKAATDFRVPLSSQALAIVAEARRLSNDPETGLLFPGDRGEPISQNALLKAINKIGEAGRPHGFRTTFRTWVQDTLDGSHDLAAEAALGHVIGNKVRRAYARSDYLDQRAALMQRWADYVTGESAQVVQLRPSAG*	common_virus_hmm	common_virus	C1	39559	32524	72083	GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote_CDS_0004	persistent	direct	high	1208	0.999	GCA_001402715.1_01338
GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote	cenote	CDS	38079	38363	GCA_001402715.1	LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715.1_LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715_1_11	GCA_001402715_1_11@C1	5556	5840	GCA_001402715_1_11_39	GCA_001402715_1_11_39	+	112450	.	.	hypothetical protein	MAIMLLYLLPLFTADFGKLNWIMWVPTIAIFAFIAVTSHSYFFNPLLGAFGWHFYRVGTPQNVTSILITKRTIRKGDQTINGIELGDYVILETE*	.	hypothetical_protein	C1	39559	32524	72083	GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote_CDS_0005	shell	direct	high	285	1.0	GCA_001402715.1_01339
GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote	cenote	CDS	38367	39236	GCA_001402715.1	LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715.1_LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715_1_11	GCA_001402715_1_11@C1	5844	6713	GCA_001402715_1_11_40	GCA_001402715_1_11_40	+	112450	.	PF16162.5	Domain of unknown function (DUF4868)	MPRTLFALCNHDGQTVVRRVPLEDGVQGDVERIFDEQEQSFFLGKDEPIEFNGDWKPDENQLLCITDRDLLAQMNETLAIGAGAYDRLDISSYDTAGVKALFMHSEQIKGHILLQKFRTSQYLQRKGLTLAFNGNQFGKLSERGFSLDERLGAVVDGDTVMFVSFHVLRSILTVQEHFAEATAQEVDEFAQHASFHIENRAVFDSHMDERCRKLIRGISKSRVLVDHNAAEIIARAKTVGLTLVEDGGRIVLPSVKRDLKTVLSFLEESVYKGVFSEETFLTNSKRPLA*	hhsuite_tools	hypothetical_protein	C1	39559	32524	72083	GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote_CDS_0006	shell	direct	high	869	0.999	GCA_001402715.1_01340
GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote	cenote	CDS	39958	40470	GCA_001402715.1	LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715.1_LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715_1_11	GCA_001402715_1_11@C1	7435	7947	GCA_001402715_1_11_41	GCA_001402715_1_11_41	-	112450	.	COG0546	Phosphoglycolate phosphatase, HAD superfamily [Energy production and conversion]. 	MIIFDFDQTLVDTSSVEQLRAARNWKAVMAKAPQLPVYEGMTELLSELHASGHTLAIVTKSPDMVPKAFIRAHKWPIDIVVGYHQVKNKKPDPEGLLLAMSKAGASPENTYHVGDQPQDTEASRGAGVMALGSAWGCGDIQGLEASNPDEIFSTVADLAVFLKSGVVRVS*	mmseqs_cdd	nonviral_gene	C1	39559	32524	72083	GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote_CDS_0007	cloud	direct	high	512	0.998	GCA_001402715.1_01341
GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote	cenote	CDS	40472	41434	GCA_001402715.1	LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715.1_LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715_1_11	GCA_001402715_1_11@C1	7949	8911	GCA_001402715_1_11_42	GCA_001402715_1_11_42	-	112450	.	COG0758	Predicted Rossmann fold nucleotide-binding protein DprA/Smf involved in DNA uptake [Replication, recombination and repair]. 	MNEAAITPSTIGLAALLNLKGIGRRAALRIIRSPLEAGSARDQIAELARVGNISNIDFADAWSKAEDNLQRSIDSGIKAFSFYDESYPERLRHMPDPPAILYVKGDSSGLHAAHSVAVIGTRDPTAYGEKVARRSAATATEQRFVVVSGLAHGCDTLGHEGCLDQNGVGVAVMAHGLEKVYPAANRGLASRLLEAGGCLVSEYPIGMTPMRSAFAERDRIQSGLSDAVLVIETDVKGGTMHTIRFSREQKRALACIDHPQSWRHEPKTQGNQMLIAENWAVPIADGHALLAFLNSVKAIDKSAPTEFPVGTGKSQISMDF*	mmseqs_cdd	nonviral_gene	C1	39559	32524	72083	GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote_CDS_0008	shell	direct	high	962	0.999	GCA_001402715.1_01342
GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote	cenote	CDS	41438	42124	GCA_001402715.1	LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715.1_LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715_1_11	GCA_001402715_1_11@C1	8915	9601	GCA_001402715_1_11_43	GCA_001402715_1_11_43	-	112450	.	PF00156.27	Phosphoribosyl transferase domain	MIYYKSVSGWMEFPRLSMSNGLTATYTIAYRLKDKTGEHWTSRFNRFKNKENKAEWGAATVMYEAVPALMKHLGLNMHQTMFLPVLSSGETQANPNRSICWMTKECAGVCGANYSSTSLAKNIHQKIHNIYDASARSAELDKANYQAAKMQTNTFVIFDDIVTRGDTLSRVALAIHAANPGSTVYGIALAKSERVAYCPNPDNDHVPASWDNLWQQGENEHAQKNSKV*	hhsuite_tools	hypothetical_protein	C1	39559	32524	72083	GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote_CDS_0009	shell	direct	high	686	0.999	GCA_001402715.1_01343
GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote	cenote	CDS	42571	43767	GCA_001402715.1	LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715.1_LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715_1_11	GCA_001402715_1_11@C1	10048	11244	GCA_001402715_1_11_44	GCA_001402715_1_11_44	-	112450	.	COG2856	Zn-dependent peptidase ImmA, M78 family [Posttranslational modification, protein turnover, chaperones]. 	MKTGTPGFQAKRLVEARDSRGLTQIALAEMVGRKSSAISRWESGDHSPEPDALDALATALRLPVSYFLRSDLEHGSRPMFFRSLLSSTTQGERKRARVRLRWAQDISAVLQDWVDLPEVDVPSIEAKDHRDIRDEDIEAAALECRARWGLGLGPINDLLLAIENAGVVVVREEVGTSKMDGVSNWSDLDNRPYMLIASDKATAVRSRMDAAHELAHLVLHRFIPSKSLNGSADFKEIERQAFYFAGAFLMPAETFSSEIWSPSLNTFLALKERWKVSVGAMIMRCVNLGIVEGEYERRLWKHYSARGWRKSEPLDDTLIPEDPRLLSRSIKLLLDEGVRTRADLIADFRLSESDVESLCGLPPGSLSASKAEILPFPSLRAKSEVAGDRNNVVPLRRD*	mmseqs_cdd	nonviral_gene	C1	39559	32524	72083	GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote_CDS_0010	shell	direct	high	1196	0.999	GCA_001402715.1_01344
GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote	cenote	CDS	43797	44027	GCA_001402715.1	LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715.1_LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715_1_11	GCA_001402715_1_11@C1	11274	11504	GCA_001402715_1_11_45	GCA_001402715_1_11_45	-	112450	.	.	hypothetical protein	MCAMLVVTASKNGDPMLPAFAGVGIPSHDLSSWIKLSSIEDIIALYNAPAEQKDVPVDIADRAVPKLKRKGPSEQG*	.	hypothetical_protein	C1	39559	32524	72083	GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote_CDS_0011	shell	direct	high	230	0.996	GCA_001402715.1_01345
GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote	cenote	CDS	44793	45632	GCA_001402715.1	LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715.1_LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715_1_11	GCA_001402715_1_11@C1	12270	13109	GCA_001402715_1_11_46	GCA_001402715_1_11_46	-	112450	.	pfam09015	NgoMIV restriction enzyme. Members of this family are prokaryotic DNA restriction enzymes, exhibiting an alpha/beta structure, with a central region comprising a mixed six-stranded beta-sheet with alpha-helices on each side. A long 'arm' protrudes out of the core of the domain between strands beta2 and beta3 and is mainly involved in the tetramerisation interface of the protein. These restriction enzymes recognize the double-stranded sequence GCCGGC and cleave after G-1.	MRPWLLEARRKFHAECLAGPITETKGVPSIADVSNRPSRDIATALVAKIGASKSHAAKPAGQTAGAMFETATQNFVASCFAQLLHLRPGSFAVERGQAISQFDQYSHLDALRSLAIENKELRTLLGTDYLIKPDVVVLRRPEPDANINRQQLLVDDTVARHTALREANGVQASLHASISCKLTIRSDRVQNTRSEALNLVRNRKGRLPHIVAVTAEPTPSRIAAIALGTGDMDCVYHFALPELVETLREQDRETLELVETMIDGQRLRDIADLPLDLII*	mmseqs_cdd	nonviral_gene	C1	39559	32524	72083	GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote_CDS_0012	shell	direct	high	839	0.999	GCA_001402715.1_01346
GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote	cenote	CDS	45632	46504	GCA_001402715.1	LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715.1_LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715_1_11	GCA_001402715_1_11@C1	13109	13981	GCA_001402715_1_11_47	GCA_001402715_1_11_47	-	112450	.	PDB:3ME5_A	Cytosine-specific-methyltransferase	MDDWCRKTLNLNRKCWNVLEGPQSDLTQFDARPYAGVDLVAGGVPCPPFSKAGKQLGAADERDLFPSAIRVVDEVRPKAVMLENVRGFLDAVFHDYRQELKAQLRALGYTFAEWHLFNASDFGVSQLRPRVVIVAVHDRYADKFEWPKGSDMRPPTVGERLRDLMGANGWEGADAWAAQADEIAPTIVGGSKKHGGPDLGPTRAKRAWATLGVNGHTIAEDAPEPGFAGVPRLTVRMVARLQGFPDDWQFVGRKTAAYRQVGNAFPPPVARAVAQNLRKAITARRFHAVA*	common_virus_hmm	common_virus	C1	39559	32524	72083	GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote_CDS_0013	shell	direct	high	872	0.999	GCA_001402715.1_01347
GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote	cenote	CDS	46896	47705	GCA_001402715.1	LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715.1_LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715_1_11	GCA_001402715_1_11@C1	14373	15182	GCA_001402715_1_11_48	GCA_001402715_1_11_48	-	112450	.	PDB:2G1P_B	Adenine-specific-DNA-methyltransferase	MTESMIPVAPVAPAAPWLGGKRNLAKRICTILDETPCRTYCEPFVGMGGIFLRRRARPRAEVINDAGRDIANLFRILQRHYPQFLEILRFQLTVRSEFERLLATRPDTLTDLERAARFLYLQRTAFGGKISGRNFGVSRDRPGRFNLLTLEPMLEDLHARLSGVVIECLDFGAFIQRYDAPETLFYLDPPYWGCEGDYGKDLFSRDDFQRLADGLRGLKGRFLLSINDVPEIREIFSWAEIEPVRTTYSIAGKGQSIPAAELLIRGKVR*	common_virus_hmm	common_virus	C1	39559	32524	72083	GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote_CDS_0014	persistent	direct	high	809	0.999	GCA_001402715.1_01348
GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote	cenote	CDS	47875	48222	GCA_001402715.1	LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715.1_LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715_1_11	GCA_001402715_1_11@C1	15352	15699	GCA_001402715_1_11_49	GCA_001402715_1_11_49	-	112450	.	PFAM:PF10828.7	Rz-like-spanin	MTDTLLATILAQIVLPILATITTALIGWAAAKLRARWGIEIEAAQREALHQALMTGAQLALTRRGRRDDGRDLDLLARDAVAHAQASVPDAIRALAPRDGVLRSLAVAKIATLSR*	phrogs_hmm	hypothetical_protein	C1	39559	32524	72083	GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote_CDS_0015	persistent	direct	high	347	0.997	GCA_001402715.1_01349
GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote	cenote	CDS	48241	48930	GCA_001402715.1	LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715.1_LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715_1_11	GCA_001402715_1_11@C1	15718	16407	GCA_001402715_1_11_50	GCA_001402715_1_11_50	-	112450	.	PDB:1WTH_A	Tail-associated-lysozyme	MTTDWRAAQLRLRALGFDPGPIDGLCGPKTKAAITAFGRSRGLSAEPGFGPVIAALMRADAPCPDLPCPDLPWMTEALRLQGLHERRDTARLRAWLDPAAGAIDPRAVPWCGAFVASCLRAALPGVILPDTPLAARAWSRFGDPVAPVFGAVLVFWRGAPSGWQGHVGFYRGEDASAYHVLGGNQSDAVTVTRIAKTRLLAARWPAGVPVTGRPVRRTTKGLALSSNEA*	common_virus_hmm	common_virus	C1	39559	32524	72083	GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote_CDS_0016	persistent	direct	high	689	0.999	GCA_001402715.1_01350
GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote	cenote	CDS	48932	49252	GCA_001402715.1	LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715.1_LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715_1_11	GCA_001402715_1_11@C1	16409	16729	GCA_001402715_1_11_51	GCA_001402715_1_11_51	-	112450	.	PFAM:PF05106.11	holin/anti-holin	MSDARGLVELVDAIWGGAVTTMAAALAGRLMWHSTEVRARKRRFLSRELLWELPVAVGMAIIGEAVAAYFELGRTVTTGVVASLAYLGPRGAQVALTRVFFHNKES*	phrogs_hmm	hypothetical_protein	C1	39559	32524	72083	GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote_CDS_0017	persistent	direct	high	320	0.997	GCA_001402715.1_01351
GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote	cenote	CDS	49314	49808	GCA_001402715.1	LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715.1_LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715_1_11	GCA_001402715_1_11@C1	16791	17285	GCA_001402715_1_11_52	GCA_001402715_1_11_52	-	112450	.	PFAM:PF14301.5	tail-fiber-protein	MEHGFFHPAHGYWQTIGTPEAALRTAYPEGTAEVPLRPGADHLWTGEGWEPAPARLSVDQALANLKAARDAAIARGIEHDGLRLQTDDLSQSRLTAAALAAQLDPALTLRWKLATGEFVALSAPQIIALALAVRAHVQACFDREADLAAQIRAAADPAAVALTF*	phrogs_hmm	common_virus	C1	39559	32524	72083	GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote_CDS_0018	cloud	direct	high	494	0.998	GCA_001402715.1_01352
GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote	cenote	CDS	49808	50752	GCA_001402715.1	LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715.1_LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715_1_11	GCA_001402715_1_11@C1	17285	18229	GCA_001402715_1_11_53	GCA_001402715_1_11_53	-	112450	.	.	hypothetical protein	MAKPAKPTVPPPPLRSNPETFSARMEASLLFWKTFAEYLDALGDHAETQADAALAAALAAGAGTGLALRGNGGKLMAVNAGATALEFLTASGAGKAILANASAAGLALASDADAAAQRATLGLGTVTPLAEAVTDLNAITRSGWNRFTASLTDNTPFATGAGMVLTIFYDGSAAVQLVWGHNKGESDTGQWIRWRAASTWRAWVRLHGSQSEINGLIGALALGVAQSWQDVTAARLAGTNYQNTTGRPIAVSITTSGTTANTALYLGVAAPANILIAATGTGSTLRIMSHQAVVPAGHYYRFEGAAPATWAELR*	.	hypothetical_protein	C1	39559	32524	72083	GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote_CDS_0019	cloud	direct	high	944	0.999	GCA_001402715.1_01353
GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote	cenote	CDS	50752	51690	GCA_001402715.1	LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715.1_LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715_1_11	GCA_001402715_1_11@C1	18229	19167	GCA_001402715_1_11_54	GCA_001402715_1_11_54	-	112450	.	.	hypothetical protein	MKILTPIAVTDATLISCSIPETDFPRWNAQTTYPRGAFVISPATHTVYRALQGDNTGHDPDLEQAALADPLIDDPDPVFWQVIGATNRWRLFDGKPSVLARAAEIIRVTLAPGVAVGGVAGFGISAAEIRVTMTDAGAVVYRRAIAMQDETVVSDGLGYYVEPITELSEFVLTDLPPYAAAQITIEAIRRGGQVSVGQIVLGPVWALGRPVIGGTGFQGVDFSYVKQDDYGDLTTVRRAATRLSTFETCLPNARLLGFDTRMRSLRGGTAAVWIGSDDPRKAAINYGFYRSYRAAYQTDAWSLISIEVQGIV*	.	hypothetical_protein	C1	39559	32524	72083	GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote_CDS_0020	persistent	direct	high	938	0.999	GCA_001402715.1_01354
GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote	cenote	CDS	51687	52757	GCA_001402715.1	LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715.1_LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715_1_11	GCA_001402715_1_11@C1	19164	20234	GCA_001402715_1_11_55	GCA_001402715_1_11_55	-	112450	.	Uniprot:Q5G7N8_9CAUD	tail-tape-measure-protein-	MVFSFFKKKVTQLDAGLRLTVTDMDTLVETFSKTKTSRFWGLSKKTRETFTEAGAAIADPIEAAVAGIVGGVADMADTLGIAGRDALKGFATQIKISTHGLSDSDAQEAIRAGFTQLSDELARIILAAGEGVSGNLSAFTSAFARRGESASETLTRLSSALATANAWLDRLGKTAYDTSLAGADAASKWAGAFGGLEAMSEAVSSYYAGFYSPAERLAQAREELSQALAGLGIDALPGSRQAFRQLIDAAFASGDSDLAAKLIQLAPAMAEITDQAQALTAALKDLDTQSLYRSGAEALYAATSEGHRRRLTGTDATVQGLLAEVVRAIREGDINNARLTARLLAVQERMSLDPAR*	hallmark_hmm	common_virus	C1	39559	32524	72083	GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote_CDS_0021	persistent	direct	high	1070	0.999	GCA_001402715.1_01355
GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote	cenote	CDS	52700	54697	GCA_001402715.1	LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715.1_LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715_1_11	GCA_001402715_1_11@C1	20177	22174	GCA_001402715_1_11_56	GCA_001402715_1_11_56	-	112450	.	Uniprot:A0A0P9JG44_PSESX	tail-tape-measure-protein-	MSASAVIGALRVNLGLDSASFQKGVARSTASLGTLKGAAMAASAAVSAIGAAIGGPALAAIVTAAARSAREITRLSQVAGASAQELQHWSFGARTVGIEQEKLADILKDVNDKVGDYLSTGGGAMADFFEKIAPRVGVTAQAFRDLSGPQALQLYVSSLEKAGLSQAEMTFYMEAIASDSTLLLPLLRANGAEMARLGETASSFGAVLGTDAITALRAAERALDDISVVIEATRNRIAADLAPAVEAMARAFVNAMREGGFLRGVIDGLMAALPHLTAYAAAFTAGLIAWQAAALAARLATMALSVSMAGLRAAIAATGVGVLVVAMGELGLAILDAVRKAGGFAAAWYKLKAKFFEVLRDMAGGWVEFTWALADGMNDLFGTRLMGADAGITQTLRDLQIGAEDAAAAAQEVSAAATEAEGTLTGLGGAGSGAGKKVKKGLTEAQKAAQEFADALRDGVRSSVEGAVDWMLDGFQGGFKGLVSLARDALKQVVALFLKNRITLSLGLGVSGGAATGAAAGAAGAAVSGAAAGGFAGPLGLLGTAGSFLGAIGSGAAGLGTALFGGRRPWRRGHLSXGTARPPWHRGQLSRRDRLGRRGWAPRFSGRAAALAPRAPISPRSSAARRAASGPSAPPSARRCRSLPGWAWSSRSSRRRSPSLTPGCG*	hallmark_hmm	common_virus	C1	39559	32524	72083	GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote_CDS_0022	persistent	direct	high	1997	0.999	GCA_001402715.1_01356
GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote	cenote	CDS	54748	54981	GCA_001402715.1	LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715.1_LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715_1_11	GCA_001402715_1_11@C1	22225	22458	GCA_001402715_1_11_57	GCA_001402715_1_11_57	-	112450	.	.	hypothetical protein	MILRGAAAQRRAEVETARALNHQLAGLVAFAFHDPQHLPEFRPDDTAATAAPAQGAREVDHERVRGALIAMALRPRP*	.	hypothetical_protein	C1	39559	32524	72083	GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote_CDS_0023	persistent	direct	high	233	0.996	GCA_001402715.1_01357
GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote	cenote	CDS	55059	55424	GCA_001402715.1	LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715.1_LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715_1_11	GCA_001402715_1_11@C1	22536	22901	GCA_001402715_1_11_58	GCA_001402715_1_11_58	-	112450	.	PFAM:PF12363.7	tail-protein	MTGMTSLRGAVPFAGERYFRLSTNALVRYQDAAGETLLEAMAALEQSPGDTRRIRRMVWAALSHEGLTEEAAGDLMDEIGQTEAARLLGEAIRAAFPQAGAQTGDAGETGGNGASRKKRTP*	phrogs_hmm	hypothetical_protein	C1	39559	32524	72083	GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote_CDS_0024	persistent	direct	high	365	0.997	GCA_001402715.1_01358
GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote	cenote	CDS	55421	55861	GCA_001402715.1	LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715.1_LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715_1_11	GCA_001402715_1_11@C1	22898	23338	GCA_001402715_1_11_59	GCA_001402715_1_11_59	-	112450	.	PFAM:PF16463.4	tail-tube-protein	MANSQIIAYGATVERSTDGVAWTAIPGCKGIAIPAPSTDYIDATSLDSPNGFKEYIRGMRDAGEISVPCGYTAAGYEQQIADSLRDEPVYYRTTLKPAPGQKTGDVFQFRGFPTPQVEGNDVTGLIAMTISIRATGNVTWTKGTKA*	hallmark_hmm	common_virus	C1	39559	32524	72083	GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote_CDS_0025	persistent	direct	high	440	0.998	GCA_001402715.1_01359
GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote	cenote	CDS	55872	56240	GCA_001402715.1	LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715.1_LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715_1_11	GCA_001402715_1_11@C1	23349	23717	GCA_001402715_1_11_60	GCA_001402715_1_11_60	-	112450	.	PDB:2LFP_A	tail-completion-protein	MEESFRAALLASGAVTALAGDRIDFGANPQDTACPRLVLWTIAETGGLLLSGPDGISRGRVQVDCYAESYGAAKRLSRAVRAVLDGYSGGGFQGVFHAGTRDSHDSEAPFRVSLDFITVFTS*	hallmark_hmm	common_virus	C1	39559	32524	72083	GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote_CDS_0026	persistent	direct	high	368	0.997	GCA_001402715.1_01360
GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote	cenote	CDS	56240	56743	GCA_001402715.1	LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715.1_LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715_1_11	GCA_001402715_1_11@C1	23717	24220	GCA_001402715_1_11_61	GCA_001402715_1_11_61	-	112450	.	PFAM:PF04883.11	type-I-neck-protein	MTGTVKLEGLRDLEQALAQIERTATAKAVMRRALKTAARPVVDLAAALAPEGPTGNLKRSISISTKLSKRQQQANRKLQAEGKAAVEMFLGPDYKQAGNHAHLVEFGTKPHRNRGQFAGTQHPGTAPRPFLRPAWEAEGRPTLDRLGKTLWVEIEKAARRAAAKEKG*	hallmark_hmm	common_virus	C1	39559	32524	72083	GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote_CDS_0027	persistent	direct	high	503	0.998	GCA_001402715.1_01361
GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote	cenote	CDS	56740	57075	GCA_001402715.1	LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715.1_LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715_1_11	GCA_001402715_1_11@C1	24217	24552	GCA_001402715_1_11_62	GCA_001402715_1_11_62	-	112450	.	CDD:pfam05521	Head-Tail-Connector-protein	MGECLDTRATILRPRLGDDGLSRSLTGWDEHATLWASLRETAGEEAAAAGQIGTRRDARLRLRASRLARQITAADRVRARGQLWEIRGICAPGAGLIELSLAAIMIGKAAG*	hallmark_hmm	common_virus	C1	39559	32524	72083	GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote_CDS_0028	persistent	direct	high	335	0.997	GCA_001402715.1_01362
GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote	cenote	CDS	57078	57671	GCA_001402715.1	LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715.1_LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715_1_11	GCA_001402715_1_11@C1	24555	25148	GCA_001402715_1_11_63	GCA_001402715_1_11_63	-	112450	.	CDD:cd08054	Head-Tail-Connector-Protein	MRVLGPVPGVVSVAEFKRATHMDEGTEDDATLAACLAAAQSLVEQATNRPLGPREVEITLEAVPGLRRWWFPCAPVVAVAQVVVETETGAQALDPARWRLRLAHDEPRLDFAAGALPSGAAPCPVTITATVGADPESPALLPLRQAIVLIARDWHAAGITIAGEAASPGALSFGARAMLRQARYLRPRVMAGGLSGG*	hallmark_hmm	common_virus	C1	39559	32524	72083	GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote_CDS_0029	persistent	direct	high	593	0.998	GCA_001402715.1_01363
GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote	cenote	CDS	57671	58177	GCA_001402715.1	LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715.1_LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715_1_11	GCA_001402715_1_11@C1	25148	25654	GCA_001402715_1_11_64	GCA_001402715_1_11_64	-	112450	.	.	hypothetical protein	MARLVTVRFLRGSAPYNTGEIAGFEAPVARALIASGAAEAVKAAPSLPATAAGPEACKRVVLTFLAAAPPYHAGDVAGFDPLEAAALVARGKAVPLTTRTAAGEDPAEEEEPAADHAADPAAEGPDDETDDDAPEPEFVLVDPDDDGAGEDLDDDGEDGAPPVQGRAG*	.	hypothetical_protein	C1	39559	32524	72083	GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote_CDS_0030	persistent	direct	high	506	0.998	GCA_001402715.1_01364
GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote	cenote	CDS	58232	59557	GCA_001402715.1	LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715.1_LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715_1_11	GCA_001402715_1_11@C1	25709	27034	GCA_001402715_1_11_65	GCA_001402715_1_11_65	-	112450	.	PDB:6B23_B	Major-Capsid-Protein	MTIDDLRRARKAAADGMSERAEALAALEAAETPDAAAISAAETAFAAAQGAFEAADKQVKRAEAVEAAKAAAAGPGDTDPGATPGAAPAPGVAAVPKDPAHKGIEVGLIVGALAAQKGDLGRAVAQLERAGFGQVAAALNATDATAGGVTVPRPLAADLIEMLRPRVVMRRAGARVVPMPAGQLRKARQAGSASAGYGGETVAPRASAPGFEAVDQSFKKLRALVPISNSLLSYSSLQMGALVRDDLLKVMGAREDLAFLRGDGTNEAPKGARNWIPAGHWLGAVAGTDALAIDKALRKLVSLVEDANILMVTPGWIMRPGAKNFLAALKDLHGNALYPSIDARGELMGFPIHTTTQLPNNLGAGANETEVMFADFSYLVIGESGLLRIAQSTEAAYLDANGEMQSAFANDQTLMRAIAEHDFAPEHEVAIAGLQGIGWAL*	hallmark_hmm	common_virus	C1	39559	32524	72083	GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote_CDS_0031	persistent	direct	high	1325	0.999	GCA_001402715.1_01365
GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote	cenote	CDS	59693	60601	GCA_001402715.1	LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715.1_LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715_1_11	GCA_001402715_1_11@C1	27170	28078	GCA_001402715_1_11_66	GCA_001402715_1_11_66	-	112450	.	cd07022	Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.	MGRTVREVLAAGGGLMALDTARAADLLATAWPAAAAAEPQALAGDPARYTRERGLAVMPVRGLLTPNSALLERYLGWATYRGIAEACAELAADAAVSAVVVEFDTPGGYTLGIEDAVTALRDLAAVKPVHALAAPLAASAGYWLASQARELVMTPGAAVGSIGVAVTAAANVAPGAASGVQLFDFTSRHARAKWPDPATEDGKAEIRRGLDRTEARFHAAVAEGRGIAPEDLAARLSVSDDPEDGGAVFDPAEALARGLADRIETRAAFYARLRAAHARAPRKGLARGARALAAAARAKARL*	mmseqs_cdd	common_virus	C1	39559	32524	72083	GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote_CDS_0032	persistent	direct	high	908	0.999	GCA_001402715.1_01366
GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote	cenote	CDS	60605	61909	GCA_001402715.1	LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715.1_LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715_1_11	GCA_001402715_1_11@C1	28082	29386	GCA_001402715_1_11_67	GCA_001402715_1_11_67	-	112450	.	CDD:pfam04860	Portal-protein	MNLRGLLGLGARAMPPAMPPAAARIEPALTGPALGRATAGAAALPVSHDAGWREFGIAGASRVRSLPRVTPDLAQKHATVVAACTVIAGDLAKLPLGVFQRAGSGREIRLRDHPLDHLLNAEAAPGVPAHVMRFAIGYAFTLRGRGFAFAPRDGAGEVTLIEAIRPDHCTVLRAGRERYYEFEDGAQVHRRVSGRVMAHLRYMAEDGWTGRSPIEVAAETLGIALARQEAAARLAGGKGFKAVAKLEDFGADDETWQRARARLKAAMAEDADEGVLIIGQSDDIKSLGLSAADLELLASQKFDREQIAALYRVPPAKLQMLEYGVKANGEQQALDYKAECLTHWGRFLESGLGQGLLSAAERRAGLFLRHQYDALLMATTKERYEAITKAVGGPILTPNEGRAIEGKDPIAGGDALYPPPNMTRKDEAATGKED*	hallmark_hmm	common_virus	C1	39559	32524	72083	GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote_CDS_0033	persistent	direct	high	1304	0.999	GCA_001402715.1_01367
GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote	cenote	CDS	61906	63579	GCA_001402715.1	LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715.1_LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715_1_11	GCA_001402715_1_11@C1	29383	31056	GCA_001402715_1_11_68	GCA_001402715_1_11_68	-	112450	.	CDD:pfam03354	Terminase-large-subunit	MRPALDHPVSRYATDVMEGRIVAGELVRLACARHLRDLDTGAERGLYFDCAAADRIINFARMLQHTVGPMAGRPLELQPWQVFRHGSVFGWKREGSGLRRFRSTYHQVGKKNGKTTDTAVPMLFTQLLDGEAAPQGFCAATTRDQAGLLFKEVGRIVKRSPVLCRMMQTMRHEIVTPRVDGVIKCLSRDGDSSDGINPSFLARDEMHRWTDRELAETIVESMIARAQPIDWVITTAGHDRQSLCGELRGYAEGVLRGAITDDAFFGFVAEPPADCDPLDPAFWPMGNPNLGVSKPIGKMHEAASKAAAIAASMPNFKRFHCNLWTEGEQMWIARESWDQGAADAPFDPRRLYGRDAWVGVDLSNKIDTTAIVVAVPLDGLIYLIAYTFLPAGPKGFIVRAQKEKREYVAWRDQGWLEVHTGGAIDEAQIEARIGWIAKTFAVQEIAYDPWGMKYMADRLAKRRLPMVEHRQGFASMSNPMKRVEELVAQNRLRHGGNPVLAWQVGNVHRDEDAAENIKPNKKRSTGRIDAAVAMIMAVGRAAAGERRRKQARGVETL*	hallmark_hmm	common_virus	C1	39559	32524	72083	GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote_CDS_0034	persistent	direct	high	1673	0.999	GCA_001402715.1_01368
GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote	cenote	CDS	63563	64003	GCA_001402715.1	LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715.1_LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715_1_11	GCA_001402715_1_11@C1	31040	31480	GCA_001402715_1_11_69	GCA_001402715_1_11_69	-	112450	.	CDD:pfam05119	Small-Terminase	MRGAKGTLRIVTPMKGEDETIPAPPEFMSADARAVWLRLAPQLVRLKRLEPHYHELFAGYCEEVAVYIAMTRDIGANGVTYETGAGRNGNQKRTRPEVHLRKSALEGMIRLGALFGLSPIDEKRLGAASQGDLFEDLMRAVNAPCA*	hallmark_hmm	common_virus	C1	39559	32524	72083	GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote_CDS_0035	persistent	direct	high	440	0.998	GCA_001402715.1_01369
GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote	cenote	CDS	64128	64532	GCA_001402715.1	LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715.1_LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715_1_11	GCA_001402715_1_11@C1	31605	32009	GCA_001402715_1_11_70	GCA_001402715_1_11_70	-	112450	.	PDB:5H0M_A	HNH-endonuclease	MRAFLFSGDDMAIRKLCSAPGCEALALPGGSRCPEHLARDRERKAKAARSAEATRWHALYHDPRWRRAAAAFLAAHPLCADCAELGVIEAAREVDHITRHRGDARAFWDRTNWQPLCKRCHSRKTAREIWHGAD*	common_virus_hmm	common_virus	C1	39559	32524	72083	GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote_CDS_0036	persistent	direct	high	404	0.998	GCA_001402715.1_01370
GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote	cenote	CDS	64625	65536	GCA_001402715.1	LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715.1_LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715_1_11	GCA_001402715_1_11@C1	32102	33013	GCA_001402715_1_11_71	GCA_001402715_1_11_71	-	112450	.	.	hypothetical protein	MSLMTFPGGRVVPATVLADLAVRHLTGTADPAAIRALAARDRAQFRFWVEVLDWALTTKAVARSELWARRGGAGGPLEVVLSVTRMQALAQACVMARAAAPQSCGPEIAAAPARGAALRFQPVAMVPKGAAGFAAEPAGYRGRDAVRRADLFDKMDRAAQRRGQAAPFSPGQVLAGRSYAALAEFVSAGGVRCSSLEGRLGGGGAGGLDWIERHAQAAARLARMQARIGPGAALSVRRVRPSKRAEEGGARLIADRALVDGFCLQGQSLGDVLLAHGWAKSGQNIEALRKALAAALERMRLCA*	.	hypothetical_protein	C1	39559	32524	72083	GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote_CDS_0037	persistent	direct	high	911	0.999	GCA_001402715.1_01371
GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote	cenote	CDS	65533	66144	GCA_001402715.1	LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715.1_LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715_1_11	GCA_001402715_1_11@C1	33010	33621	GCA_001402715_1_11_72	GCA_001402715_1_11_72	-	112450	.	.	hypothetical protein	MTGQDQEQDVERPDGERPDGGRSEARVRAELLGPMAGLRRSRKVTAGDHARDQAMIARRLSYMSRQNLRGLCEMALKQARGVWPEPALLLSWAYGLEQPPPQRSDYVASLLRSAAGREARDGGYLVELMRMARRLGPPPGRYMISKLREEAADNARRRAGLRQMLERGSSLRREDHAWLEAYHADLALAEAMMKSSDAEDRAA*	.	hypothetical_protein	C1	39559	32524	72083	GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote_CDS_0038	persistent	direct	high	611	0.998	GCA_001402715.1_01372
GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote	cenote	CDS	66318	66983	GCA_001402715.1	LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715.1_LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715_1_11	GCA_001402715_1_11@C1	33795	34460	GCA_001402715_1_11_73	GCA_001402715_1_11_73	-	112450	.	PFAM:PF07120.10	replication-protein	MVEAFHGAGIQRAALFKPVGAEEIRDYPLSNEDRLDSHYFVPWERRRWLNSDMRLRGTAECRALYLDLIFISYDQSPVGTLPIDTDILARLVMVDPVHMRALCSLPYGPLHRWERCRCDGGEIRLMHPMVLRTLTEAIARKEDNRAKNEAANAAKRRQRLRITISGYAADLAKNDAALLFMDEWLVSQGCEYRSSVWVERALAAWSDHMLALTMRARSDRP*	phrogs_hmm	hypothetical_protein	C1	39559	32524	72083	GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote_CDS_0039	persistent	direct	high	665	0.998	GCA_001402715.1_01373
GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote	cenote	CDS	67093	67413	GCA_001402715.1	LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715.1_LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715_1_11	GCA_001402715_1_11@C1	34570	34890	GCA_001402715_1_11_74	GCA_001402715_1_11_74	-	112450	.	.	hypothetical protein	MSGAALRIETGRMARFLGLMRDRLALLGDGEIDAVERFCDAAGLVRLVQGPPEGGALVLLAVPSLRMLHFLDRIGCAPWAAMAVAFAGVEVPPELGEVDDLLARAF*	.	hypothetical_protein	C1	39559	32524	72083	GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote_CDS_0040	persistent	direct	high	320	0.997	GCA_001402715.1_01375
GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote	cenote	CDS	67410	67856	GCA_001402715.1	LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715.1_LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715_1_11	GCA_001402715_1_11@C1	34887	35333	GCA_001402715_1_11_75	GCA_001402715_1_11_75	-	112450	.	PFAM:PF10078.8	transcriptional-regulator	MRNGTLISQEDAARRIEDALRLRVGRGRRFSFPALSDATGIPTRTLESYVQGATPQLNALLSICSVLGPSFTSDILAACGQMAHEASPGEPEHLRVAASLGELVMQISEAVADGYVDHREAAQMRPLAARLIELLEPLAYDPAARGRP*	phrogs_hmm	hypothetical_protein	C1	39559	32524	72083	GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote_CDS_0041	persistent	direct	high	446	0.998	GCA_001402715.1_01376
GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote	cenote	CDS	69244	69462	GCA_001402715.1	LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715.1_LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715_1_11	GCA_001402715_1_11@C1	36721	36939	GCA_001402715_1_11_76	GCA_001402715_1_11_76	+	112450	.	.	hypothetical protein	MRRDEPRFLRLRDGLAVSHHPSLSFPAYAAILAATLLFGHLGLRTALNLTLALEPHICHPALAAAPLYPECR*	.	hypothetical_protein	C1	39559	32524	72083	GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote_CDS_0042	persistent	direct	high	218	0.995	GCA_001402715.1_01377
GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote	cenote	CDS	69532	69825	GCA_001402715.1	LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715.1_LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715_1_11	GCA_001402715_1_11@C1	37009	37302	GCA_001402715_1_11_77	GCA_001402715_1_11_77	+	112450	.	COG3750	Uncharacterized conserved protein, UPF0335 family [Function unknown]. 	MLDQTPMKETAADRAVRDRAYAVAADELRQFVEQYEQLDAEKKDIAEQQKDIMAEARGRGYDTRVIRKIIALRKRDKADVAEEEAILDLYKSALGMI*	mmseqs_cdd	nonviral_gene	C1	39559	32524	72083	GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote_CDS_0043	persistent	direct	high	293	0.997	GCA_001402715.1_01378
GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote	cenote	CDS	69912	70124	GCA_001402715.1	LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715.1_LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715_1_11	GCA_001402715_1_11@C1	37389	37601	GCA_001402715_1_11_78	GCA_001402715_1_11_78	+	112450	.	.	hypothetical protein	MTFPVRVEVIDPELDEVIRDTGRCEIDYHTPAGRGWLQGQIMSRLLSGLALKITPLARPRHGIPRGRSET*	.	hypothetical_protein	C1	39559	32524	72083	GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote_CDS_0044	persistent	direct	high	212	0.995	GCA_001402715.1_01379
GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote	cenote	CDS	70497	71507	GCA_001402715.1	LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715.1_LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715_1_11	GCA_001402715_1_11@C1	37974	38984	GCA_001402715_1_11_79	GCA_001402715_1_11_79	+	112450	.	PDB:1Z19_B	Integrase	MPDISIGRLRGGYCVYWHDDTGRRRYQLEARTRKEAESEAIAVYRQKAAASTSVATVSSIWADYVRDLGDKPTAKTMGYTGKAILPAFGHMAPEQIDRTACRAYAAAREAAGISQGSIWTELGHLQSALNYGKKTRLYAGEAVHLWRPPKPDPEKRILNAGEARRLIEHASAPHIRLALILLLGTGARVGAVLDLTWDRVDFERNCINLRIADSKTRKGRAIVPMNASVRAALATAREAALSDSVIEYAGGPVACIRNGVSAAVRRARLGHVTIHELRHTAAVHMLGAGVPLEKVSQVLGHSNTAVTFRTYARYLPNQMDDAVAALDFMNLRRVPK*	common_virus_hmm	common_virus	C1	39559	32524	72083	GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote_CDS_0045	shell	direct	high	1010	0.999	GCA_001402715.1_01380
GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote	cenote	CDS	71684	72082	GCA_001402715.1	LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715.1_LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715_1_11	GCA_001402715_1_11@C1	39161	39559	GCA_001402715_1_11_80	GCA_001402715_1_11_80	-	112450	.	PFAM:PF00216.20	DNA-binding-protein	MRKSTKKSTAAKAVPPQPVPEELAPEAAPEAAPVAVRVQVKKKDFVERVVLRSGAKKPVVRDLTEAVLAVLGEALAKGETLVLPPLGKISVARSVGKAGGEILHVKLRRMAAPEDAKKDEDSASNPLADAEE*	phrogs_hmm	hypothetical_protein	C1	39559	32524	72083	GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote_CDS_0046	persistent	direct	high	398	0.997	GCA_001402715.1_01382
GCA_001402715.1|LLVU01000011.1@region_80840_91684@tool_cenote	cenote	CDS	80839	82260	GCA_001402715.1	LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715.1_LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715_1_11	GCA_001402715_1_11@C3	1	1422	GCA_001402715_1_11_86	GCA_001402715_1_11_86	+	112450	.	PDB:1Z19_B	Integrase	MGLVLKHVERTKAGSWQYRRRVPKEVASVITKREFKRKLGDSEKAALAAYPRYHAEVEREIAEAKRRLAGAAAASSSEASDREAYVEALRRRADLIERGATEEDLALEAASLADSFPQDHFEPIGVPPVERHTINLLRLGPKRYPAPAATLEDAKRLYLEERAKSGEAGDALARFAGQVERIVGHVRAALGSDPVLVDLTRDDARRVRDYMLSRFKDNGEKISPASVARDMNGLKAVINFAATELPLPATFQNPFNKLTLGTVRGRASDGEKRDPLPATVLRKVRERIVGHAKADLVLIWRILEGTGCRLAEVTGLRVEDVVTGGEFPHIKVTWHENRRLKTEASRRSVPLAGDALEAAKEALKLPRQGNLLFPAYASERGADAASASLMKHLRTVTKDPKHVVHSLRHNMKDALILAEVATLEQNLILGHALGSVGDRVYGGEVAKLRQTTKAMRKALGLPAVEADGAEDQP*	common_virus_hmm	common_virus	C3	10845	80839	91684	GCA_001402715.1|LLVU01000011.1@region_80840_91684@tool_cenote_CDS_0001	persistent	direct	high	1421	0.999	GCA_001402715.1_01389
GCA_001402715.1|LLVU01000011.1@region_80840_91684@tool_cenote	cenote	CDS	82530	83075	GCA_001402715.1	LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715.1_LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715_1_11	GCA_001402715_1_11@C3	1692	2237	GCA_001402715_1_11_87	GCA_001402715_1_11_87	-	112450	.	PFAM:PF10547.8	P22_AR-repressor-domain-protein	MQSLNIISESGLYALALRSNKPEAKAFRKWVTATVLPTIRKTGSYVRGEEAFDVTTEEGLAAATMHVMAALQAKADGFKAMYEAAKPKADAFAVIEEATGSMTVTEAAKALKAKRVDLYGFLEHRKWVTKGKGRQATAYALRTGYMDTRTHTDTRGRVHTTPVVTPKGLAYLAQIKAQQRA*	common_virus_hmm	common_virus	C3	10845	80839	91684	GCA_001402715.1|LLVU01000011.1@region_80840_91684@tool_cenote_CDS_0002	persistent	direct	high	545	0.998	GCA_001402715.1_01390
GCA_001402715.1|LLVU01000011.1@region_80840_91684@tool_cenote	cenote	CDS	83310	83795	GCA_001402715.1	LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715.1_LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715_1_11	GCA_001402715_1_11@C3	2472	2957	GCA_001402715_1_11_88	GCA_001402715_1_11_88	-	112450	.	.	hypothetical protein	MERRFQLRWDEEELARAFRVTPKDVREYLTDGRRVSFIIERRLMWENPGWKLAPSEGAGYDLLDPEGGMWEVRSITRQGVYFNPSNQVGSGRVFNEEGFQAKLSGIKGFILSDIVGFPVVDVFVVPVDNVLRWHRGRALGSNAKISRDKFLNILARDIRHE*	.	hypothetical_protein	C3	10845	80839	91684	GCA_001402715.1|LLVU01000011.1@region_80840_91684@tool_cenote_CDS_0003	shell	direct	high	485	0.998	GCA_001402715.1_01391
GCA_001402715.1|LLVU01000011.1@region_80840_91684@tool_cenote	cenote	CDS	83867	84109	GCA_001402715.1	LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715.1_LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715_1_11	GCA_001402715_1_11@C3	3029	3271	GCA_001402715_1_11_89	GCA_001402715_1_11_89	+	112450	.	.	hypothetical protein	MKRVILDAVEIARLMQPTVGQGGFQSLLQYLQGKLDQQTGRIDLTDEDRGKICRYAYDYGNGGWENQLKSIFGNHLSEMN*	.	hypothetical_protein	C3	10845	80839	91684	GCA_001402715.1|LLVU01000011.1@region_80840_91684@tool_cenote_CDS_0004	cloud	direct	high	242	0.996	GCA_001402715.1_01392
GCA_001402715.1|LLVU01000011.1@region_80840_91684@tool_cenote	cenote	CDS	84111	85340	GCA_001402715.1	LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715.1_LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715_1_11	GCA_001402715_1_11@C3	3273	4502	GCA_001402715_1_11_90	GCA_001402715_1_11_90	-	112450	.	PDB:1G60_B	Adenine-specific-DNA-methyltransferase	MNQLSIFDQDQFAATAETFIDDLRAFDEFGQRTVTETVEGIPYLINEFWTAGQRQAHSIHEVSYRACFKAQLPEFFINRLTKPGDVVFDPFMGRGTTPVQAALMGRQAFGNDINPLSVLLTRPRLRPITLQAVAAALQTVDWSRGEIEREDLLAFYHPETLRKLEALRLWLAERAPLGGESVDPVADWIRMVAINRLSGHSPGFFSGRSMPPNQAVSVKAQLKINEKLGVSPPDRDVAAVILKKSKTLLKDGCAPSQVRSGLHTGAAWDLRGIADASVDLTVTSPPFLDIVHYAADNWLRCWFAGIDPETVAIDMHRTEEAWTAMVHRVLAEQARILRPSGYVAFEVGEVRNGKVLLERLVWKAAEGLPFNRLGVMVNDQEFTKTANCWGVDNGAKGTNTNRIVLLQRD*	common_virus_hmm	common_virus	C3	10845	80839	91684	GCA_001402715.1|LLVU01000011.1@region_80840_91684@tool_cenote_CDS_0005	shell	direct	high	1229	0.999	GCA_001402715.1_01393
GCA_001402715.1|LLVU01000011.1@region_80840_91684@tool_cenote	cenote	CDS	85556	86674	GCA_001402715.1	LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715.1_LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715_1_11	GCA_001402715_1_11@C3	4718	5836	GCA_001402715_1_11_91	GCA_001402715_1_11_91	+	112450	.	TIGR04474	three-Cys-motif partner protein. Members of this family occur regularly as a partner to as a member of family pfam07505, which has been called a phage protein but which seems to occur also in other contexts. Members average about 400 residues in length, but the conserved region covered by the model averages 260 residues and excludes the C-terminus. Conserved motifs suggest enzymatic activity. Note that its frequent partner protein (see pfam07505) has a three-cysteine motif that resembles the Cx3CxxC motif of radical SAM proteins, and that in one branch (see TIGR04471) actually becomes Cx3CxxC. We suggest the name three-Cys-motif partner protein (tcmP), and renaming pfam07505 to three-Cys-motif family protein	MTKQFFEERGDQSVVKARIVQKYFVAWANIIVAAAAKFGDAKIAYIDLYAGPGRYKDGAASTPLLVLEKAIESEPIRKALVALFNDRDQNNSKTLEQEIAALPGIEKLKHKPIVNCNEVGADAEAYFSETKIIPSFTFFDPFGYKGLSLKLINGVIKDWGCDCVFFFNYNRINAGLSNPMVKSHLDALFGVERAESLRGKVENAKPAHRQEMVLEELSNALIEMGAAFVLPFRFKNQEGRLTHHLVFVSKSFKGYEVMKEIMAKESSTEEQGVSSFAYSPADETMPFLFEFQRPLDELGDMLTRAFSGQTISMRDIYCQHSVGRPYLSRHYKEVLGKLEEADKIKVTDPEGKKRRKNSFADRLLVTFLEAAG*	mmseqs_cdd	nonviral_gene	C3	10845	80839	91684	GCA_001402715.1|LLVU01000011.1@region_80840_91684@tool_cenote_CDS_0006	shell	direct	high	1118	0.999	GCA_001402715.1_01394
GCA_001402715.1|LLVU01000011.1@region_80840_91684@tool_cenote	cenote	CDS	86674	87426	GCA_001402715.1	LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715.1_LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715_1_11	GCA_001402715_1_11@C3	5836	6588	GCA_001402715_1_11_92	GCA_001402715_1_11_92	+	112450	.	COG4422	Bacteriophage protein gp37  [Mobilome: prophages, transposons]. 	MGTNSRIEWTEATWNPVAGCSIVSPGCTNCYAMRMARRLEAMGQDKYSGLTRTSGGRPKWNGLIRLDESSLRIPLGWKVGRMIFVNSMSDLFHEDVPLSFIQQVFAVMRDCPHHTFQVLTKRSEQLVEVAPYLDWTPNIWMGVSVESEDYKFRIENLRKTPAKVKFLSLEPLLGDLGALNLKGIDWAIAGGESGPAARDMQPEWVRSIRDQCISSGVAFHFKQWGGVNKKKSGRTLDGRTWDELPVSVVA*	mmseqs_cdd	nonviral_gene	C3	10845	80839	91684	GCA_001402715.1|LLVU01000011.1@region_80840_91684@tool_cenote_CDS_0007	shell	direct	high	752	0.999	GCA_001402715.1_01395
GCA_001402715.1|LLVU01000011.1@region_80840_91684@tool_cenote	cenote	CDS	87553	88269	GCA_001402715.1	LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715.1_LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715_1_11	GCA_001402715_1_11@C3	6715	7431	GCA_001402715_1_11_93	GCA_001402715_1_11_93	-	112450	.	PDB:4IDH_A	Large-Terminase	MSSSIDLVFMPDGRVVNDTHQDPAIPRVTGFQNYWVAADLGQAHDYSAVCVIKDQALPTVDEGRVIVGSRERTVVFADRFRGVSYVDVVDHLIRLKNVPPFGGKSNLVIDGTSIGRVVSDMLHEQNVPHFAIQMTGGQEWTKKGRYVNAGKTAMIETLAVMFAAGEIKFAHDCPLRAEIEADLASFTTQTTAAGNQIITQGRNGSGHGDLGIALIVGGFASQHLKPQRMEVAHLSGYY*	hallmark_hmm	common_virus	C3	10845	80839	91684	GCA_001402715.1|LLVU01000011.1@region_80840_91684@tool_cenote_CDS_0008	shell	direct	high	716	0.999	GCA_001402715.1_01396
GCA_001402715.1|LLVU01000011.1@region_80840_91684@tool_cenote	cenote	CDS	88254	88895	GCA_001402715.1	LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715.1_LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715_1_11	GCA_001402715_1_11@C3	7416	8057	GCA_001402715_1_11_94	GCA_001402715_1_11_94	-	112450	.	PFAM:PF03354.14	Terminase	MRPLVVWATGLLAVFAVIVGQLVLTICIAPAERQAKIIAREIGRQLRRTDLVITRSTLTELEMSNGARVVALPSTSDTIRGFPSVSLLIIDECAFLKGDDDEETRGETLISGVLPMLTTQGQVFFSSTPAGKQNYFAKLFLDAKPDDGIHRIVVKGTAIPRLAEKVERMRRTLSATKFRQEIEVEMLADGASYFDLSIIEQATSTESAICPRL*	hallmark_hmm	common_virus	C3	10845	80839	91684	GCA_001402715.1|LLVU01000011.1@region_80840_91684@tool_cenote_CDS_0009	shell	direct	high	641	0.998	GCA_001402715.1_01397
GCA_001402715.1|LLVU01000011.1@region_80840_91684@tool_cenote	cenote	CDS	88895	89245	GCA_001402715.1	LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715.1_LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715_1_11	GCA_001402715_1_11@C3	8057	8407	GCA_001402715_1_11_95	GCA_001402715_1_11_95	-	112450	.	PFAM:PF05099.12	tellurite-resistance	MAALVSAADGEIEDSEVGAILDALSNHATLSAAFKAPEIEAALNKQLARAKGGMAGKLALKREIAEMKDKNTHDELEMAFVIAIDVSLSDGEMEPAEKKVLDDLGKSLGFSLASYL*	phrogs_hmm	hypothetical_protein	C3	10845	80839	91684	GCA_001402715.1|LLVU01000011.1@region_80840_91684@tool_cenote_CDS_0010	shell	direct	high	350	0.997	GCA_001402715.1_01398
GCA_001402715.1|LLVU01000011.1@region_80840_91684@tool_cenote	cenote	CDS	89633	89911	GCA_001402715.1	LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715.1_LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715_1_11	GCA_001402715_1_11@C3	8795	9073	GCA_001402715_1_11_96	GCA_001402715_1_11_96	-	112450	.	.	hypothetical protein	MQPPQSRAERFLSRFTRFSDDFGQIPFLPSGQKLVADDDQPGLYLKVGKTAKSWVVQTEVRVLDDKMKPSGCRVERGDVAPFSGAHQERAGA*	.	hypothetical_protein	C3	10845	80839	91684	GCA_001402715.1|LLVU01000011.1@region_80840_91684@tool_cenote_CDS_0011	.	unmatched_CDS	none	0	0	.
GCA_001402715.1|LLVU01000011.1@region_80840_91684@tool_cenote	cenote	CDS	89980	90852	GCA_001402715.1	LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715.1_LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715_1_11	GCA_001402715_1_11@C3	9142	10014	GCA_001402715_1_11_97	GCA_001402715_1_11_97	-	112450	.	.	hypothetical protein	MDYASQTDFLSMAREVLAKGPVAVILAEDLVEVESTLRHHLKLGFRTLILCAPTALRLPDDLAAQVHRIPWIADHPEAFVDALNPLIAAAPEGTWFYYGFNAEYLFFPFCETRSIREMLAFHTEERRFGMLSYVIDLYAADLDKNPDGVNLAEAMLDRTGYYALGRPDPDNPGRPRERQLDFFGGLRWRFDEHIPPARRKIDRIALFRTAPGLRLRADHTLSDEERNTYACPWHHNLTAAIASFRVAKALKRNPGSTYDISTFRWHNSVPFAWSSRQLLDLGLMEPGQWF*	.	hypothetical_protein	C3	10845	80839	91684	GCA_001402715.1|LLVU01000011.1@region_80840_91684@tool_cenote_CDS_0012	persistent	direct	high	872	0.999	GCA_001402715.1_01399
GCA_001402715.1|LLVU01000011.1@region_80840_91684@tool_cenote	cenote	CDS	90955	91683	GCA_001402715.1	LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715.1_LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715_1_11	GCA_001402715_1_11@C3	10117	10845	GCA_001402715_1_11_98	GCA_001402715_1_11_98	-	112450	.	PRK06476	pyrroline-5-carboxylate reductase; Reviewed	MRIGILGTGAIAEAVVRGIAADGHEITVSDRSATRAAALARDVVGLRVASNQAVLEAADVVILGLVAGVAGAVLPGLRFRPGQRVISLMAGAGLAEVAAWVAPARAEAVMLPYPAIATGGSPILAFGETGLITALFGARNRIFARASEAELADFLVAQAVLSPLALALADTAAWLAPRISDPAAAEVFLRDLVATSLAAGPLRDLLAALDTEGGYNRRLRQHMERAGMTRDLRAGLDRLADP*	mmseqs_cdd	nonviral_gene	C3	10845	80839	91684	GCA_001402715.1|LLVU01000011.1@region_80840_91684@tool_cenote_CDS_0013	persistent	direct	high	728	0.999	GCA_001402715.1_01400
GCA_001402715.1|LLVU01000019.1@region_1_7249@tool_cenote	cenote	CDS	1	530	GCA_001402715.1	LLVU01000019.1	GCA_001402715.1|LLVU01000019.1	GCA_001402715.1_LLVU01000019.1	GCA_001402715.1|LLVU01000019.1	GCA_001402715_1_19	GCA_001402715_1_19@C0	1	531	GCA_001402715_1_19_1	GCA_001402715_1_19_1	-	24748	.	PFAM:PF03629.17	tail-protein	MTTGVNTTNLVTAALLDSVLGNRNGTSAKASIADLAAQLAASGALADRLNDLDAAMAGKPFVIFVAGQSNAARRVAYAPFSPPPNLYMWSYTGTALSAAAATTTIGTFQTGAAIAGTSNWGTMIGARAAIEYPTRPVFVINISRGGIPIAQWDAAAADPNMWTATLANVPAALAEIA	phrogs_hmm	hypothetical_protein	C0	7249	0	7249	GCA_001402715.1|LLVU01000019.1@region_1_7249@tool_cenote_CDS_0001	.	unmatched_CDS	none	0	0	.
GCA_001402715.1|LLVU01000019.1@region_1_7249@tool_cenote	cenote	CDS	539	2068	GCA_001402715.1	LLVU01000019.1	GCA_001402715.1|LLVU01000019.1	GCA_001402715.1_LLVU01000019.1	GCA_001402715.1|LLVU01000019.1	GCA_001402715_1_19	GCA_001402715_1_19@C0	540	2069	GCA_001402715_1_19_2	GCA_001402715_1_19_2	-	24748	.	COG4733	Phage-related protein, tail component  [Mobilome: prophages, transposons]. 	MSDRLTRRAAVMAKVEAVYGTAETTFAATRGDAIALSHDVLSRVQLAARVKSVQGAAVEIDDVFAMTAGETYACRFRVFETEEDTVGISVVRPVMTLPGETQILTLTGSGPMPVVGDLVHVGPARVESYAQIVTRIEATQDMCAIVRTVDAAPQIDTILAATPIPAWSSRVGAEIDDNLLQPSAPRFVALTSGLAATGLANRISYAVAPGTGSVPTIEIGLDHRISGAESWSSTTIPVANGGGTIDSYTPGQSVDLRARGIGATGVAGPWSATITIVVGSADAALPAALDAASISITTLLGGALIQFATGDDAATARVQIYRSITSLLDRETDAVGAPIAVEPGQSYATTLGDTTRTDLIVGGGLEAAGSWTLGTGWTISGGVAAHAAGAAGRISQAVALTGGKYYRIGYDVVSISGSTVQAGLIGATLRPGTSVATTGPKLDRIQAVSGGTGIAISAEAGAAATIDNVRAYLETDACLEQGAHHIWIEPQNAAGVPGPVAGPFTIIIT*	mmseqs_cdd	common_virus	C0	7249	0	7249	GCA_001402715.1|LLVU01000019.1@region_1_7249@tool_cenote_CDS_0002	shell	direct	high	1529	0.999	GCA_001402715.1_02027
GCA_001402715.1|LLVU01000019.1@region_1_7249@tool_cenote	cenote	CDS	2068	2271	GCA_001402715.1	LLVU01000019.1	GCA_001402715.1|LLVU01000019.1	GCA_001402715.1_LLVU01000019.1	GCA_001402715.1|LLVU01000019.1	GCA_001402715_1_19	GCA_001402715_1_19@C0	2069	2272	GCA_001402715_1_19_3	GCA_001402715_1_19_3	-	24748	.	.	hypothetical protein	MSKSKTTPAPSVQPYPDRGGSFVLDEGSMTLTPVPKPGETADDTPVQGPVETDVETGPEPTPEQEPQ*	.	hypothetical_protein	C0	7249	0	7249	GCA_001402715.1|LLVU01000019.1@region_1_7249@tool_cenote_CDS_0003	cloud	direct	high	203	0.995	GCA_001402715.1_02028
GCA_001402715.1|LLVU01000019.1@region_1_7249@tool_cenote	cenote	CDS	2268	2708	GCA_001402715.1	LLVU01000019.1	GCA_001402715.1|LLVU01000019.1	GCA_001402715.1_LLVU01000019.1	GCA_001402715.1|LLVU01000019.1	GCA_001402715_1_19	GCA_001402715_1_19@C0	2269	2709	GCA_001402715_1_19_4	GCA_001402715_1_19_4	-	24748	.	PDB:2GJV_C	tail-completion-protein	MADVDDITARLKERVPGLGGRAWGAAEFGALTATGQLPQATPAAHVIPTGIKGGSQTPRTAAYVQSIERLYSVVLTVKAGDASGARALPVIGELIAAIIAALAGWDWGGRVGVMTFRGCTLSRAVAGAFVYDISFSIPDQLRFAPT*	hallmark_hmm	common_virus	C0	7249	0	7249	GCA_001402715.1|LLVU01000019.1@region_1_7249@tool_cenote_CDS_0004	cloud	direct	high	440	0.998	GCA_001402715.1_02029
GCA_001402715.1|LLVU01000019.1@region_1_7249@tool_cenote	cenote	CDS	2712	3461	GCA_001402715.1	LLVU01000019.1	GCA_001402715.1|LLVU01000019.1	GCA_001402715.1_LLVU01000019.1	GCA_001402715.1|LLVU01000019.1	GCA_001402715_1_19	GCA_001402715_1_19@C0	2713	3462	GCA_001402715_1_19_5	GCA_001402715_1_19_5	+	24748	.	COG3598	RecA-family ATPase  [Replication, recombination and repair]. 	MIAAARDTFVATPKLKLLLDADGVTLIAEAIRAAFPDAPPDVIVIDPIRNLFDGGPEGGGENDNTAMMFFLKDRVEVLREAVNPDAGVILAHHTRKAAKHQVKDDPFLALSGASALRGFYTSGLLMHRPDEDSTQRRLEIELRNGPALPGKLIDKVARRWVELNQMNERLVRKEPYGRRRRPKLCAFRPRMCCTSTGRLMPGRSGACRMRHPLWCDCFFWINTTTRNSTGKRRLRCSLASSPRTLRKNR*	mmseqs_cdd	nonviral_gene	C0	7249	0	7249	GCA_001402715.1|LLVU01000019.1@region_1_7249@tool_cenote_CDS_0005	cloud	direct	moderate	382	0.509	GCA_001402715.1_02029
GCA_001402715.1|LLVU01000019.1@region_1_7249@tool_cenote	cenote	CDS	3570	3824	GCA_001402715.1	LLVU01000019.1	GCA_001402715.1|LLVU01000019.1	GCA_001402715.1_LLVU01000019.1	GCA_001402715.1|LLVU01000019.1	GCA_001402715_1_19	GCA_001402715_1_19@C0	3571	3825	GCA_001402715_1_19_6	GCA_001402715_1_19_6	+	24748	.	.	hypothetical protein	MLVAATEVLTHARAVVDLCRLAGQPQMAGRFLERDTGIDDVRAALLATRAEAVPDISAAHPQPGRPSGARPWGDVIARTFRLKG*	.	hypothetical_protein	C0	7249	0	7249	GCA_001402715.1|LLVU01000019.1@region_1_7249@tool_cenote_CDS_0006	.	unmatched_CDS	none	0	0	.
GCA_001402715.1|LLVU01000019.1@region_1_7249@tool_cenote	cenote	CDS	3829	4194	GCA_001402715.1	LLVU01000019.1	GCA_001402715.1|LLVU01000019.1	GCA_001402715.1_LLVU01000019.1	GCA_001402715.1|LLVU01000019.1	GCA_001402715_1_19	GCA_001402715_1_19@C0	3830	4195	GCA_001402715_1_19_7	GCA_001402715_1_19_7	+	24748	.	PDB:1TCZ_D	Head-decoration-protein	MTTLTETRHAGGFLVWEALRDFCRSTVILASGDLQPGTILGKITASGKYAAHDPAASNGTQTAAAILWDSVDASSGDTNAVVLIRGPAIVNQYEISILGTPTAPQIAAAYAALLTLGILVR*	hallmark_hmm	common_virus	C0	7249	0	7249	GCA_001402715.1|LLVU01000019.1@region_1_7249@tool_cenote_CDS_0007	shell	direct	high	365	0.997	GCA_001402715.1_02030
GCA_001402715.1|LLVU01000019.1@region_1_7249@tool_cenote	cenote	CDS	4217	5530	GCA_001402715.1	LLVU01000019.1	GCA_001402715.1|LLVU01000019.1	GCA_001402715.1_LLVU01000019.1	GCA_001402715.1|LLVU01000019.1	GCA_001402715_1_19	GCA_001402715_1_19@C0	4218	5531	GCA_001402715_1_19_8	GCA_001402715_1_19_8	+	24748	.	PDB:6XGP_A	Major-Capsid-Protein	MATMDIFEGDAFSIIELTRALENIPYQPATLSASGLFGPRGVRSRTVVIESRDGTLSLIPFSERGSAYDQQTPERRDVRAFVCRQFKKQDVIWASEIQQVRDFGSESATQQVQAEVARKLGRLRNDAETTFEYHLFNGIQGLVKDPRDGATVVNDFTEFGITPATEVDFDLDNATPASGALRKRCQALIESVEDTMGGLATGAIALRAECGSAFFADLVAHKEVRETYLNTAAAADLRSRIADEVSFGGITFRRYRGGAGFGVATDKAVFYPEAVEGLFEIYHAPADTFETLNTLGQPLYARIIPDRDRDEWVRLEIESNPLPICTRPQVLRSAADVTGVSYVARGRSQFMPARRGSVPKLSRPNSRPSLGCSRMACAPLWPMRMRQVWRSTGCGAANAGQVSTARFAPPSGSRTDAYRMTSAPISRAASESCWQGP*	hallmark_hmm	common_virus	C0	7249	0	7249	GCA_001402715.1|LLVU01000019.1@region_1_7249@tool_cenote_CDS_0008	shell	direct	high	1313	0.999	GCA_001402715.1_02031
GCA_001402715.1|LLVU01000019.1@region_1_7249@tool_cenote	cenote	CDS	5975	6355	GCA_001402715.1	LLVU01000019.1	GCA_001402715.1|LLVU01000019.1	GCA_001402715.1_LLVU01000019.1	GCA_001402715.1|LLVU01000019.1	GCA_001402715_1_19	GCA_001402715_1_19@C0	5976	6356	GCA_001402715_1_19_9	GCA_001402715_1_19_9	-	24748	.	PFAM:PF10078.8	transcriptional-repressor	MAHPRNLAPAPDRNAVLTKAMLRAAERLGLSGRQLAEIVGVSEATVSRLKRGEATLEAGSKPFELAALLVRAFRSLDAITGGDEAVARVWMTAANAALAASPLERMATVQGLVDVTTYLDARRAPV*	phrogs_hmm	hypothetical_protein	C0	7249	0	7249	GCA_001402715.1|LLVU01000019.1@region_1_7249@tool_cenote_CDS_0009	shell	direct	high	380	0.997	GCA_001402715.1_02032
GCA_001402715.1|LLVU01000019.1@region_1_7249@tool_cenote	cenote	CDS	6414	6662	GCA_001402715.1	LLVU01000019.1	GCA_001402715.1|LLVU01000019.1	GCA_001402715.1_LLVU01000019.1	GCA_001402715.1|LLVU01000019.1	GCA_001402715_1_19	GCA_001402715_1_19@C0	6415	6663	GCA_001402715_1_19_10	GCA_001402715_1_19_10	+	24748	.	.	hypothetical protein	MSLAFETALELLFADPNLGRDVVYIADGGAPVSVLSRDLRAGCAVIFGGSGADGDRSKGAGRRAALAPGPTSPHSALARGDG*	.	hypothetical_protein	C0	7249	0	7249	GCA_001402715.1|LLVU01000019.1@region_1_7249@tool_cenote_CDS_0010	shell	ambiguous	low	3	0.012	GCA_001402715.1_02033
GCA_001402715.1|LLVU01000019.1@region_1_7249@tool_cenote	cenote	CDS	6659	7054	GCA_001402715.1	LLVU01000019.1	GCA_001402715.1|LLVU01000019.1	GCA_001402715.1_LLVU01000019.1	GCA_001402715.1|LLVU01000019.1	GCA_001402715_1_19	GCA_001402715_1_19@C0	6660	7055	GCA_001402715_1_19_11	GCA_001402715_1_19_11	+	24748	.	.	hypothetical protein	MTGIFAGMAAMAALAIWLRGRGADARLTPAVGCLALFALGLTVLLVLDGGPREDWQVLVLPPLPILLAHHVRSLAGPARWPRIEAALADLAAARPGLAAALAPLPPEVRRAYAATLAAPWGGTPSARIRWP*	.	hypothetical_protein	C0	7249	0	7249	GCA_001402715.1|LLVU01000019.1@region_1_7249@tool_cenote_CDS_0011	shell	direct	high	395	0.997	GCA_001402715.1_02033
GCA_001402715.1|LLVU01000019.1@region_1_7249@tool_cenote	cenote	CDS	7015	7248	GCA_001402715.1	LLVU01000019.1	GCA_001402715.1|LLVU01000019.1	GCA_001402715.1_LLVU01000019.1	GCA_001402715.1|LLVU01000019.1	GCA_001402715_1_19	GCA_001402715_1_19@C0	7016	7249	GCA_001402715_1_19_12	GCA_001402715_1_19_12	+	24748	.	.	hypothetical protein	MGGDAVRQDPLALIGKFDGPGLALYGGSDSRIDAAENAAALRRLAPKPGLEIEILPGLTPLFQPDPTGDPQITPATG*	.	hypothetical_protein	C0	7249	0	7249	GCA_001402715.1|LLVU01000019.1@region_1_7249@tool_cenote_CDS_0012	shell	direct	moderate	197	0.842	GCA_001402715.1_02034
GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote	cenote	CDS	1	159	GCA_001402715.1	LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715.1_LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715_1_33	GCA_001402715_1_33@C0	2	160	GCA_001402715_1_33_1	GCA_001402715_1_33_1	+	200434	.	PRK00174	acetyl-CoA synthetase; Provisional	WAPGLPKTRSGKIMRRILRKIAENDYGALGDISTLADPAVVQDLIDNRMNRA*	mmseqs_cdd	nonviral_gene	C0	28722	0	28722	GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote_CDS_0001	persistent	direct	moderate	119	0.748	GCA_001402715.1_02697
GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote	cenote	CDS	162	332	GCA_001402715.1	LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715.1_LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715_1_33	GCA_001402715_1_33@C0	163	333	GCA_001402715_1_33_2	GCA_001402715_1_33_2	+	200434	.	COG0563	Adenylate kinase or related kinase [Nucleotide transport and metabolism]. 	MDTAETAQARLAACHAQTAPLIAHYRALGVLQRVDAMQGIDAVAQELGSIVSRVSA*	mmseqs_cdd	nonviral_gene	C0	28722	0	28722	GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote_CDS_0002	shell	direct	high	170	0.994	GCA_001402715.1_02698
GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote	cenote	CDS	394	651	GCA_001402715.1	LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715.1_LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715_1_33	GCA_001402715_1_33@C0	395	652	GCA_001402715_1_33_3	GCA_001402715_1_33_3	+	200434	.	COG4327	Uncharacterized membrane protein  [Function unknown]. 	MADNSSSNAYWKANVRIILISLAIWFACSFGMGIILRPALSGIHIGGADLGFWMAHNGSIYVFLGLIFTYAVLMNRLDREHGVEE*	mmseqs_cdd	nonviral_gene	C0	28722	0	28722	GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote_CDS_0003	shell	direct	high	257	0.996	GCA_001402715.1_02699
GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote	cenote	CDS	667	2586	GCA_001402715.1	LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715.1_LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715_1_33	GCA_001402715_1_33@C0	668	2587	GCA_001402715_1_33_4	GCA_001402715_1_33_4	+	200434	.	TIGR03648	probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.	MDQFTLNLIVVGITFAIYIGIAIWARAGSTAEFYAAGQGVHPVLNGMATGADWMSAASFISMAGIIAFGGYATGAYLMGWTGGYVLLALLLAPYLRKFGKFTVPEFIGDRFYSGGARLLAVICLIVISVTYVIGQMRGVGVTFSRFLEVSTDMGLYIGAAIVFAYAVFGGMKGITYTQVAQYVVLIIAYTIPALFISFNLTGNPIPQLGLIGGYAPSGGDVAFLAKLDAVVTELGFKAYTADSSNYFDMFLFTMSLMIGTAGLPHVIIRFFTVPKVADARSSAGWALVFIALLYTVAPAVGSMARLNLTTSMWPAAVTGNAFDGPAVSRADIDSKPELEWVKNWEKTGLLAMKDLNGDGLIQYVSEPAKLAANTKAMDEAAKAKDEAKLAALTTEREGLLATEQLAKTGKTFAELGLKGNEVVKVDNDIMVLANPEIANLPGWVIALVAAGALAAALSTAAGLLLAISSAISHDLIKGSINPNISEKGELLAARIAMGGAIVVATYLGLNPPGFAAQVVALAFGLAAATIFPVLMMGIFSKRVNKEGAIAGMLVGLVFTAVYIFIYKGWFFIPGTNNLPDTPANYMFGISPLSIGTVGAVMNFLTAFVVSAITKAPPQSVIDLVESIRVPKGAGKATHH*	mmseqs_cdd	nonviral_gene	C0	28722	0	28722	GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote_CDS_0004	shell	direct	high	1919	0.999	GCA_001402715.1_02700
GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote	cenote	CDS	2676	4502	GCA_001402715.1	LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715.1_LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715_1_33	GCA_001402715_1_33@C0	2677	4503	GCA_001402715_1_33_5	GCA_001402715_1_33_5	+	200434	.	pfam03445	Putative nucleotidyltransferase DUF294. This domain is found associated with pfam00571. This region is uncharacterized, however it seems to be similar to pfam01909, conserving the DXD motif. This strongly suggests that members of this family are also nucleotidyltransferases (Bateman A pers. obs.).	METDQKAITAFLETVHPYDTLPRDELADVARSFRRMEFRPEALIYVYQTPLGGLYLVKQGAVEITDGNGGLVSLLGPRNSFGERGLMRDGLAATQAKATEQTICLVLPTPTFKRLIETYPAFERFFNRKRGEKVSTEIATQKVADLIARKPLSCGPDTSVVAAAKMMRDAHVSSLGVVAEAERLLGIVTQRDLSNKVLAGELPGSTPVASVMTPDPVSLPPDALGSDILNIMLERRIGHLPITAEGRFVGMITQTDLTRFQAVSSAVLIRDVVSAETVADLAQVAGRIPQLLVQLVGGHHAHDVITRMITDIADAVTRRLLVMAEHELGPPPVPYLWLACGSQGRQEQTGVSDQDNCLIVEDAATAEDMGYFRALAKIVSDGLDACGYVYCPGDMMATAERWCQPARVWRDYFTGWIAKPSPEAQMLASVMFDLRPIGGGGIAMFEALQAETLELTAKNSIFVAHMIANSLKHTPPLGLLRGFATIRSGEHRNHIDMKMNGVVPVADLARIYALQGRLAPVNTRARLKAAEEAGVISPSGARDLIEAYDLIAAMRLDNQVTLIKSGRAPDNFLAPSDLSDFERAHLRDAFVVVRTMQSAVGHNKAVVS*	mmseqs_cdd	nonviral_gene	C0	28722	0	28722	GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote_CDS_0005	persistent	direct	high	1826	0.999	GCA_001402715.1_02701
GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote	cenote	CDS	4502	5029	GCA_001402715.1	LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715.1_LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715_1_33	GCA_001402715_1_33@C0	4503	5030	GCA_001402715_1_33_6	GCA_001402715_1_33_6	+	200434	.	.	hypothetical protein	MSNDLITMLAAGLFAAIVLYAARHATQKLLRRSLPTWLTPAAAGLAMILATVWGEYRWFADASARLPETAQVISANAASEPWRPWTYLWPVTTRFVALDGANRARPAPGVVATNLYLVARWQPVQPVTVAYDCVGGRQAVLGGEAAVTADGSLTSGAWSAAPEGDAGLKAACAGG*	.	hypothetical_protein	C0	28722	0	28722	GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote_CDS_0006	shell	direct	high	527	0.998	GCA_001402715.1_02702
GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote	cenote	CDS	5031	5435	GCA_001402715.1	LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715.1_LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715_1_33	GCA_001402715_1_33@C0	5032	5436	GCA_001402715_1_33_7	GCA_001402715_1_33_7	+	200434	.	COG0745	DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain [Signal transduction mechanisms, Transcription]. 	MNHDAAGRDRKRRVLIVEDEDNIAIALDYLLGREGLERVRIATGLGAVKRIRDDRPDLVLLDVMLPEVSGYEICQEVRADHSLSAVRIVMMTARGSALERRKALALGADGFIAKPFELKELRDELHRLLDGGGL*	mmseqs_cdd	nonviral_gene	C0	28722	0	28722	GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote_CDS_0007	persistent	direct	high	404	0.998	GCA_001402715.1_02703
GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote	cenote	CDS	5435	7537	GCA_001402715.1	LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715.1_LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715_1_33	GCA_001402715_1_33@C0	5436	7538	GCA_001402715_1_33_8	GCA_001402715_1_33_8	+	200434	.	PDB:5M1S_D	DNA-polymerase-III-subunit-alpha	MPLTRLSLRLRIFLFFAALALGNLVALVAGLVFGFEKLGHSEALDGFVIGGVVAGLVITGLIVSVWYLFDENLAKPIERLAGHIRARTHTAIDTELDQTAGRYLGDLAPAAAAITQHLNETRSALTESVQRETIRLAQEKERLEALLSDVPVGVLLCSATHQLVFYNGQAVDLLGGAHAPGLDRRVFDYLNRAPILHAYERLLQATDPDAASDLLCATTADGRTLAARMRLISEGEDHAVTRKAGYVLTLRDVSADMLAHAGREALMDELFDRIRRPAAALQSLIGVLIADDGPTEPQARAQLRGAAQSEAGHLAQAIHTLFERHEAMRADWWPLAMIRASDFGEAVKARVAAEGAGDLLAVSAPLMLRIEGFEMVALIATLVARLGPGRGDKRLEILEEGAGALIALEWQGEAVAIAELEAWLSAPLDVGMADVTGRRVLAAHAADIWPERLHDGRHRLCLPLREARRIGNGPRPVARKVVYDFDLLGREKENEIAHTPLEKLTFVVFDTETTGLLPTEGDEIVQIAAVRIVNGRRVASEVFDTLVNPGRRIPAVSTAVHGITDAMVADAPDIIEVGRRFHKFAEGAVLVAHNAPFDLEFLRRKELLIGLNFDHPVLDTVLLSAVVFGQSEVHSLDALTHRLGITIPEEARHTAIGDTVATAEAFLRLLPSLKSRGLTTFGAVVAEVRKHGRLLRDANG*	common_virus_hmm	common_virus	C0	28722	0	28722	GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote_CDS_0008	shell	direct	high	2102	1.0	GCA_001402715.1_02704
GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote	cenote	CDS	7835	8143	GCA_001402715.1	LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715.1_LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715_1_33	GCA_001402715_1_33@C0	7836	8144	GCA_001402715_1_33_9	GCA_001402715_1_33_9	+	200434	.	.	hypothetical protein	MNGFVSPFRRDLCTRTCAKAAIRGSLLPDASRSSSSHAFSFAVTGEPKISMIAFAAVTPTACSSEIRIRYAGSTSSALASEGTRSSGNLLLPDFRIEMKFAF*	.	hypothetical_protein	C0	28722	0	28722	GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote_CDS_0009	shell	direct	moderate	206	0.667	GCA_001402715.1_02705
GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote	cenote	CDS	8575	8781	GCA_001402715.1	LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715.1_LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715_1_33	GCA_001402715_1_33@C0	8576	8782	GCA_001402715_1_33_10	GCA_001402715_1_33_10	+	200434	.	.	hypothetical protein	MTINVNDYPQLRQLCWNRPDRAVVDGRTALALYERNWRFVDHDAFTPREQELLDRLVADYGNGHLMVA*	.	hypothetical_protein	C0	28722	0	28722	GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote_CDS_0010	shell	direct	high	206	0.995	GCA_001402715.1_02706
GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote	cenote	CDS	8781	9500	GCA_001402715.1	LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715.1_LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715_1_33	GCA_001402715_1_33@C0	8782	9501	GCA_001402715_1_33_11	GCA_001402715_1_33_11	+	200434	.	4OK0_B	Putative	MAASKVAELFTRRHHNDILHVLRCLNGDFLRDAECYFGGGTAIVLELGEYRESVDIDFLCASQEGYRKLRQALWGRSDLAGYLRPGAELALLRDVRMDQYGIRTLISVGDVAIKFEIVREARIGLTGEIDARYGVPVLSRDHMFAEKLLANADRWNDTGVLSRDILDLSMMMSRWGAVPEAAWALAEGAYGDTVRKSYDKAVERIRKPEWLRKCMHDMAMDPNLETEILAVHGGPVSPV*	hhsuite_tools	hypothetical_protein	C0	28722	0	28722	GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote_CDS_0011	shell	direct	high	719	0.999	GCA_001402715.1_02707
GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote	cenote	CDS	10167	10373	GCA_001402715.1	LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715.1_LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715_1_33	GCA_001402715_1_33@C0	10168	10374	GCA_001402715_1_33_12	GCA_001402715_1_33_12	+	200434	.	.	hypothetical protein	MRFILLGAGASKSYDASPTGQRMPIARDFFSTFFKLNAATNPWVLRDGLIHYLQSEKGIMDTDAFLAA*	.	hypothetical_protein	C0	28722	0	28722	GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote_CDS_0012	.	unmatched_CDS	none	0	0	.
GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote	cenote	CDS	10482	11102	GCA_001402715.1	LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715.1_LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715_1_33	GCA_001402715_1_33@C0	10483	11103	GCA_001402715_1_33_13	GCA_001402715_1_33_13	+	200434	.	cd01411	SIR2H	MFLFATTLNEIANGPVSQSHIDLANYLKPEDVVLTFNWDTLVDLAMMEATEWVSDSGYGIKPHRIFRDGWVDLIEKSSANALIKLHGSVNWLTAHPVYDGEELVLTHALPADSLFVYEYATRPYATHAGRYTGGYAKMTYGYYPPNLTDIPGRSAPEGYVIVKVQSEMSWMPKGQSGEQGIVSMPLIIPPVKTKSYQFFGTLFERL*	hhsuite_tools	hypothetical_protein	C0	28722	0	28722	GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote_CDS_0013	shell	direct	high	620	0.998	GCA_001402715.1_02708
GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote	cenote	CDS	11474	12046	GCA_001402715.1	LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715.1_LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715_1_33	GCA_001402715_1_33@C0	11475	12047	GCA_001402715_1_33_14	GCA_001402715_1_33_14	+	200434	.	PFAM:PF13701.5	Transposase-DDE-domain-protein	MAQMGFFDLSDRYASLDAKRDPLVEIDALVPWEEFRPVLERVWRKPEAARKSRAGRKPMDAVVMFKTLVLGALYNLSDDQIEYQVRDRLSFMRFLGLGLQDRVPDAKTVWLYREGLAQAGVVEALFRQFDGYLARQGYIARGGQILDASIVPVPRNHNTREENKAIKAGEMPEGWADKPANCARGRARIG*	common_virus_hmm	common_virus	C0	28722	0	28722	GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote_CDS_0014	shell	direct	high	572	0.998	GCA_001402715.1_02709
GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote	cenote	CDS	12176	12451	GCA_001402715.1	LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715.1_LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715_1_33	GCA_001402715_1_33@C0	12177	12452	GCA_001402715_1_33_15	GCA_001402715_1_33_15	-	200434	.	.	hypothetical protein	MTEEDRRESWKFAVVAGWVPFTFQSRDGDAVECRVLKVRAGKTFFGASKNTFRVFKGLETGRFIFISEHSTTLKAMWGVFKLMTEMGVRGG*	.	hypothetical_protein	C0	28722	0	28722	GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote_CDS_0015	.	unmatched_CDS	none	0	0	.
GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote	cenote	CDS	13002	13583	GCA_001402715.1	LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715.1_LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715_1_33	GCA_001402715_1_33@C0	13003	13584	GCA_001402715_1_33_16	GCA_001402715_1_33_16	+	200434	.	PDB:1ZR4_E	gamma-delta-Resolvase,-site-specific-recombination	MLIGYARTSTLDQKAGLDAQRRDLEAVGCERIFVEQVSSVDVVSRAQLAEALTFAREGDTLVVTKLDRLARSVAHLVGILGQLEEKGVALRILSMGIDTATPTGKLMLTILGGVAEFEREIMLERQREGIAKAKAEGKYKGRAPTARAKAEEVLRLHAEGIGGTEIAKRLGIGRASVYRIIGDGIAAEATSEA*	common_virus_hmm	common_virus	C0	28722	0	28722	GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote_CDS_0016	cloud	direct	high	581	0.998	GCA_001402715.1_02710
GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote	cenote	CDS	14221	14358	GCA_001402715.1	LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715.1_LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715_1_33	GCA_001402715_1_33@C0	14222	14359	GCA_001402715_1_33_17	GCA_001402715_1_33_17	+	200434	.	.	hypothetical protein	MKRTSQTRHNRITNRPCLSGGGYKSKEINLNQDTTSDTRACEAMP*	.	hypothetical_protein	C0	28722	0	28722	GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote_CDS_0017	shell	direct	high	137	0.993	GCA_001402715.1_02711
GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote	cenote	CDS	14355	15014	GCA_001402715.1	LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715.1_LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715_1_33	GCA_001402715_1_33@C0	14356	15015	GCA_001402715_1_33_18	GCA_001402715_1_33_18	+	200434	.	.	hypothetical protein	MTARICAVPHCGSPAASDYSPHCRRHKSTLRRHGAPDQSGVTKTELAPYLARIGARIAKNPDNETWPLLEAAWANIVTEAEATASRRIGNRYARNAANEIVGIAQDVAPGTVVATVLAMVLMWHDRPLRFRTDDALRVQIARRVRALSGRHVGLRYDHRTGQQIRVYREMTPKAAALLGRQLMLAFGATGLHLAALDERDRKAATETKQRLATAISNLQ*	.	hypothetical_protein	C0	28722	0	28722	GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote_CDS_0018	cloud	direct	high	659	0.998	GCA_001402715.1_02712
GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote	cenote	CDS	15011	15553	GCA_001402715.1	LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715.1_LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715_1_33	GCA_001402715_1_33@C0	15012	15554	GCA_001402715_1_33_19	GCA_001402715_1_33_19	+	200434	.	PDB:1JL1_A	RIBONUCLEASE-HI	MKDEPLNQAMTAALPPVPTCIVIYTGSSWQTQLGVGGYAAILCRYRDGKIEKRRPVTGGAVETSNIQMEMSAVIDALKQIRRDETAPIFVFTCNDLIMKGMTEWLPGWVAKGWRNGKGKRVENVDLWQEIVQLCEGLSVTFRWARNQPGNPMNDEVARVATKECDKWVRQHCRELFGDAA*	common_virus_hmm	common_virus	C0	28722	0	28722	GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote_CDS_0019	shell	direct	high	542	0.998	GCA_001402715.1_02713
GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote	cenote	CDS	15625	16326	GCA_001402715.1	LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715.1_LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715_1_33	GCA_001402715_1_33@C0	15626	16327	GCA_001402715_1_33_20	GCA_001402715_1_33_20	+	200434	.	PFAM:PF05766.11	HNH-endonuclease	MIETQSCSTPSPEAKASVLPAQPSETEPTASICPRCGASFKPRSNKTYCTSTCAKAAIRNRTRGPRADASDDRYRNYRSFGCLHWLNETYYMTPPGARLGLLKDWLDAARAGNAHLAHVLTNPMFFAPAEERKKSVSFRGKRAYPPIPFLADMYCRKFLGCRVWQWTNGTTSEPETGEVQTALPRKRPSGIRSETANLSNEKETRTIYVSQDPQAFLGWLKAQRDPEEMKTAA*	phrogs_hmm	hypothetical_protein	C0	28722	0	28722	GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote_CDS_0020	shell	direct	moderate	428	0.61	GCA_001402715.1_02714
GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote	cenote	CDS	16420	17970	GCA_001402715.1	LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715.1_LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715_1_33	GCA_001402715_1_33@C0	16421	17971	GCA_001402715_1_33_21	GCA_001402715_1_33_21	-	200434	.	PDB:1Z19_B	Integrase	MVLQMARPQKNPKSGVYYFRQKTPADLVAVFGRKEVSRSLGTKDPAEAKERNIDAVRKQALIWDRLRKRPEPLPHQQIVALSGVLYRDHMAAMELEPGEPGVWVETLKLLDRIAATPEALERWYGPTVDTLLLERGIVTDDTSRQRLIQETDRAFRQVAEQQLKRAEGDYSPDPRANRFPPVEAATAPANAPTEKLSITALFKLWERDHLANGKSARTVGDFRQKIESLIAFLGHDEARNVTAENIADWCDHLRHEKGLAARTVSQKYLTVIKVIFGVAVEKRKLKENPAKENRVRFTKPQRLRQKGFTDDEANAILKAALADPAELGRRTTENKRAIRWGPWICAFSGARITEVMQMRTDDLVEDHGVLCLRITPEAGSVKTGTFRLVPIHPQLLDMGLARMFRALPPGPVFYSLAPVRGKPADPVERAQSAGAKVGQWVREVVGISDPNVQPNHAWRHRFKTVAREVGIAPEYSDAITGHEDGRAASDYGETTVKALWREVQKLPRYEVTAKRM*	common_virus_hmm	common_virus	C0	28722	0	28722	GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote_CDS_0021	shell	direct	high	1550	0.999	GCA_001402715.1_02715
GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote	cenote	CDS	18212	18610	GCA_001402715.1	LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715.1_LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715_1_33	GCA_001402715_1_33@C0	18213	18611	GCA_001402715_1_33_22	GCA_001402715_1_33_22	+	200434	.	.	hypothetical protein	MKRASFADSIKPEHKRMSRLLGYCLTLSSVDAWLSFSLIARVRLSAIERGALAYALLKSLDRDTAEMTAAAVIGQGGDPLPPFLGGMDDARQWASWASPQELKAYALAAFEAMPPKDQAAFHRHISTMEVAA*	.	hypothetical_protein	C0	28722	0	28722	GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote_CDS_0022	shell	direct	high	398	0.997	GCA_001402715.1_02716
GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote	cenote	CDS	18607	19161	GCA_001402715.1	LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715.1_LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715_1_33	GCA_001402715_1_33@C0	18608	19162	GCA_001402715_1_33_23	GCA_001402715_1_33_23	+	200434	.	CDD:cd08054	Head-Tail-Connector-Protein	MRMLVNREYTGDQLPFSLFELKTHLRVDHNDEDLAIQDIGLTAAADVESFAQIALLSQLIRVNIFEPAIGCHGIKLPIGPVLDAASVAITVDGEAFTGFEVATGGRPFVTWKASYAELVPSRLGIEYTAGFGASASNIPADLRLAIMDQAAAIYDGRSPSDAKTLATSPHMARIGARYRGVSVS*	hallmark_hmm	common_virus	C0	28722	0	28722	GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote_CDS_0023	shell	direct	high	554	0.998	GCA_001402715.1_02717
GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote	cenote	CDS	19158	19394	GCA_001402715.1	LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715.1_LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715_1_33	GCA_001402715_1_33@C0	19159	19395	GCA_001402715_1_33_24	GCA_001402715_1_33_24	+	200434	.	.	hypothetical protein	MTDIELDQILTFKWPMIIRRVMADVNADGFAKGFVRSIARHGKRKDWRPSQRQERVMRQMLIDYSADREPEPELFERE*	.	hypothetical_protein	C0	28722	0	28722	GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote_CDS_0024	shell	direct	high	236	0.996	GCA_001402715.1_02718
GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote	cenote	CDS	19745	21397	GCA_001402715.1	LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715.1_LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715_1_33	GCA_001402715_1_33@C0	19746	21398	GCA_001402715_1_33_25	GCA_001402715_1_33_25	+	200434	.	PFAM:PF03354.15	Large-Terminase	MAKENTAALADLFGGSGPNAPKSIGPKTEVLPVPFSLLKKIGGKSQSVRAIQFLGLLHIPEGKKAGKPLKLADFQRKFVKGALAKKIMVGVLSIGRGNAKTALSAGLALAELVGALEENPQPKREIIFAARNRDQAKTAFQFLVGYIQGLPDADQSLFTIRRGSKLEVEFDGNGGGLARVIAADGKSILGGAPTLAIMDERAAWEREKGDSLENAILSGLGKRDGRALIISTSAPDDANTFSRWLDDPPPGTYVQEHRPPFGLPADDLDSLLIANPGATEGIGAAPEWLVSQAQRAIARGGAALSSFRNLNRNERVSTEDRSVLVTVDEWMSAEVSPDDLPEREGPCILGVDLGGSRSMSAAAFYWPETGRLEALGTFPAAPSLADRGASDGVSDRYCQMQERGELSVMGEATVPPGPWLAQIVQHLDGITPDCIVGDRFRHAEFTEAMQAAGLGRVPFIWRGFGWKDGSEDVERFRRALFDGEVKVVPSMLLRFAFADAITLIDPAGNHKLAKARSLGRIDAAAATVLAVAQGARMKAAPVRKARALWL*	hallmark_hmm	common_virus	C0	28722	0	28722	GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote_CDS_0025	shell	ambiguous	low	9	0.005	GCA_001402715.1_02720
GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote	cenote	CDS	21388	21729	GCA_001402715.1	LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715.1_LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715_1_33	GCA_001402715_1_33@C0	21389	21730	GCA_001402715_1_33_26	GCA_001402715_1_33_26	+	200434	.	CDD:pfam05521	Head-Tail-Connector-protein	MAVNVARLDRRVQFLRAVTGDDGFGNVTLSWAAHGGTVWASRKDISDAEQVAAGRVLATVTARFVVRHSSFSAGLTPADRLSCDGATWEIEGIKEVSAPRRGFLEVTATKGAV*	hallmark_hmm	common_virus	C0	28722	0	28722	GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote_CDS_0026	shell	direct	high	341	0.997	GCA_001402715.1_02720
GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote	cenote	CDS	21726	22061	GCA_001402715.1	LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715.1_LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715_1_33	GCA_001402715_1_33@C0	21727	22062	GCA_001402715_1_33_27	GCA_001402715_1_33_27	+	200434	.	PDB:5H0M_A	HNH-endonuclease	MSKRDDFARHSKAVTRTKRWAVLRQQILERDGWACQRCGKRALRLEVDHVKPVRLRPDLAFDPRNLQSLCGPCHTRKTRIECGHKEKSPERKAWADAVAELATETATREKE*	common_virus_hmm	common_virus	C0	28722	0	28722	GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote_CDS_0027	shell	direct	high	335	0.997	GCA_001402715.1_02721
GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote	cenote	CDS	22065	23330	GCA_001402715.1	LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715.1_LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715_1_33	GCA_001402715_1_33@C0	22066	23331	GCA_001402715_1_33_28	GCA_001402715_1_33_28	+	200434	.	PDB:3QPR_G	Major-Capsid-Protein	MLESVKIARRQSEIRQKLAELAGKPTPTEDEIRSMEALDGEYRANETRYRAALIAEDTERREAGADLETRAGREWSELVAGFQMRQVIAVLNGEGRPLDGRTAEVVTELRNAGGYRGIPVPLLALEARAGETVSTGTPDPVQTRPIIDRLFPASVAARMGAQMIAIGAGAVEWPVATSTVSAGWATGETGAVAGPTAYATTDKALKPEQTLGVQMRITRKALMQSGEALEAAIRRDMAGAMQAELDRAIFLGTGANGQPLGVIIGAATYGITATAVDAAASWATFRNAVVRFMARNAASTPADVLALIRPEVWSFMEDQLTATAAPKYEFDRMAEKLGGIAMSSTALAAPTGTPAACNALLTTSAGGVAPIFVGMWGAVDLIRDPFSDAASGGLRLTALTTCDVTVARGAQLELLTGVQVA*	hallmark_hmm	common_virus	C0	28722	0	28722	GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote_CDS_0028	shell	direct	high	1265	0.999	GCA_001402715.1_02722
GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote	cenote	CDS	23330	23884	GCA_001402715.1	LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715.1_LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715_1_33	GCA_001402715_1_33@C0	23331	23885	GCA_001402715_1_33_29	GCA_001402715_1_33_29	+	200434	.	CDD:COG3740	head-maturation-protease	MLWGAASGALEIRSEGGATALRAVFPYGAETELAPGKREVFAPHAFRARIEAGEEIHLLAQHNYQWPLASTAAGTLRLRSTDLAVEIEATVDGATSWGRDFLAAHRAGLIRGLSPGFRVPNGGERVERRGADLVRTVTQAALFEVSAVTVPAYPQAQIEARGWETHQDRQPFRGAVNPLNRWRL*	hallmark_hmm	common_virus	C0	28722	0	28722	GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote_CDS_0029	shell	direct	high	554	0.998	GCA_001402715.1_02723
GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote	cenote	CDS	23887	24954	GCA_001402715.1	LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715.1_LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715_1_33	GCA_001402715_1_33@C0	23888	24955	GCA_001402715_1_33_30	GCA_001402715_1_33_30	+	200434	.	CDD:pfam04860	Portal-protein	MWPFKRKTETRSAMAAGYTAQIIAARESYVAGVSGIAELTATVQTCVSLWESAFAQADVTGTDLLDRRTMALIARSAAIRGEAVLLIRDRLIPCADWDLSTKDGTPRAYRVTVPEAGGSTSTTVLAAEVLHLRLGVDPVAPWTGQAPLRRASLTASLLHEIETALRDTWRDAPIGSQIAHMPEGSADDMAAMRSAFKGRRGSALIVEGVAQAVGAGMHPNAGKVPDQLTPDLQRAMPADLLDAARGAICAAYGVLPAMFSLSAQGPLVREAQRHLAGWILQPMAELLAEEASAKLGGAVMIDVGRPLQAFDAGGRARALSQLIEAMGRAKELGLSPEELAGALKAVNWGGGDALA*	hallmark_hmm	common_virus	C0	28722	0	28722	GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote_CDS_0030	shell	direct	high	1067	0.999	GCA_001402715.1_02724
GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote	cenote	CDS	25092	25313	GCA_001402715.1	LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715.1_LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715_1_33	GCA_001402715_1_33@C0	25093	25314	GCA_001402715_1_33_31	GCA_001402715_1_33_31	-	200434	.	.	hypothetical protein	MIEVGKKYTLVMLELTDAGYCKGSTGVTVTGRDGNLIEVNGCEVINTASPLFHSLTDDEGQKAYFEKLEASLF*	.	hypothetical_protein	C0	28722	0	28722	GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote_CDS_0031	shell	direct	high	221	0.995	GCA_001402715.1_02725
GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote	cenote	CDS	25306	25647	GCA_001402715.1	LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715.1_LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715_1_33	GCA_001402715_1_33@C0	25307	25648	GCA_001402715_1_33_32	GCA_001402715_1_33_32	-	200434	.	PFAM:PF16777.4	partition-protein-ATPase	MAKQDDWIRITLRLPRDLHARITAAVGAASLNATIVTSLEERFPVSAEERLRALLDEYDEAMAEDGPNKENLRKLYEWGRQILERELRAKKTRKPLRRLPQHRKQKVEEINDD*	phrogs_hmm	hypothetical_protein	C0	28722	0	28722	GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote_CDS_0032	shell	ambiguous	low	9	0.026	GCA_001402715.1_02725
GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote	cenote	CDS	25821	26180	GCA_001402715.1	LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715.1_LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715_1_33	GCA_001402715_1_33@C0	25822	26181	GCA_001402715_1_33_33	GCA_001402715_1_33_33	+	200434	.	.	hypothetical protein	MPAINPASGNAPGLPAARISPFNSADEPNSVRYVRVLLDIPALGYREGDLIELTPVDRIDADAKFRLITGEIAQFSMWPGGKFRVVSPDGAIHFLDRDECHAIVIGRVTRVFRDVCYLQ*	.	hypothetical_protein	C0	28722	0	28722	GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote_CDS_0033	shell	direct	high	359	0.997	GCA_001402715.1_02726
GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote	cenote	CDS	26654	26935	GCA_001402715.1	LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715.1_LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715_1_33	GCA_001402715_1_33@C0	26655	26936	GCA_001402715_1_33_34	GCA_001402715_1_33_34	+	200434	.	.	hypothetical protein	MIEDAALDSILIAEAEQSFGVAGMRTPEWLIIWANGKTQFYYDEDISEETFFGNTFFADDHIQGPVILFCMGAMAHMVLDRLPRPAIRLAQGA*	.	hypothetical_protein	C0	28722	0	28722	GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote_CDS_0034	shell	direct	high	281	0.996	GCA_001402715.1_02727
GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote	cenote	CDS	27146	28210	GCA_001402715.1	LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715.1_LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715_1_33	GCA_001402715_1_33@C0	27147	28211	GCA_001402715_1_33_35	GCA_001402715_1_33_35	+	200434	.	PDB:1Z19_B	Integrase	MPRHKQPARLYFRHDERQWVIRDGSTQKRTGYGLEQRGEAEAALAEYLARKQIERRHGPAHPGELTVGEVLALYAEDRGRLLASPQTLACSIQALAPFWADLTCDAVKGSTCRRYERERAKPRKIETTSKTGKAISRVVTAGASTVRRELGVLQAALNYAHQEGILIHPITVSLPDAGEPRDRWLTRQEAAKLLRHAEPHVRRFILLSLYTGRRASAILELTWTRIDLDQGTVRFREEGQAETNKRRGRIRLPRQMRGHLSRWGTHRGTHVVMYRGKPVQNIKTGIRRAAERAGLEDVSPHVLKHTAITWAISAGLGVEDAAEYFNTSPETIRKHYWHHSPHHQEPALEVIERR*	common_virus_hmm	common_virus	C0	28722	0	28722	GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote_CDS_0035	shell	direct	high	1064	0.999	GCA_001402715.1_02728
GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote	cenote	CDS	28557	28721	GCA_001402715.1	LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715.1_LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715_1_33	GCA_001402715_1_33@C0	28558	28722	GCA_001402715_1_33_36	GCA_001402715_1_33_36	+	200434	.	.	hypothetical protein	MTKDTPSRKTASDATRDARLAAALRANLTRRKAQARARSAEENNNETAETGPEE*	.	hypothetical_protein	C0	28722	0	28722	GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote_CDS_0036	persistent	direct	high	164	0.994	GCA_001402715.1_02730
GCA_001402715.1|LLVU01000062.1@region_140457_147370@tool_cenote	cenote	CDS	140456	141124	GCA_001402715.1	LLVU01000062.1	GCA_001402715.1|LLVU01000062.1	GCA_001402715.1_LLVU01000062.1	GCA_001402715.1|LLVU01000062.1	GCA_001402715_1_35	GCA_001402715_1_35@C7	1	669	GCA_001402715_1_35_138	GCA_001402715_1_35_138	-	235327	.	.	hypothetical protein	MPLFLVVRSGSSPRGRGTEGASCATCSGIRFIPAWAGNSSPADAGRNGSAVHPRVGGEQAPCVSVCRLSTGSSPRGRGTDATGRVREAWERFIPAWAGNRRRCRFPRPTTPVHPRVGGEQSMCLTIEVSGAGSSPRGRGTAAWSFSPNPPARFIPAWAGNSQAAAECGWCRSVHPRVGGEQVRRAEAEHDLRGSSPRGRGTVVCEAPKLAIHRFIPAWAGNR*	.	hypothetical_protein	C7	6914	140456	147370	GCA_001402715.1|LLVU01000062.1@region_140457_147370@tool_cenote_CDS_0001	.	unmatched_CDS	none	0	0	.
GCA_001402715.1|LLVU01000062.1@region_140457_147370@tool_cenote	cenote	CDS	142219	143178	GCA_001402715.1	LLVU01000062.1	GCA_001402715.1|LLVU01000062.1	GCA_001402715.1_LLVU01000062.1	GCA_001402715.1|LLVU01000062.1	GCA_001402715_1_35	GCA_001402715_1_35@C7	1764	2723	GCA_001402715_1_35_139	GCA_001402715_1_35_139	-	235327	.	COG4388	Mu-like prophage I protein  [Mobilome: prophages, transposons]. 	MTHKPSTSLALCAAQPLPEGDAPEWVHLLPSAGGTILTHDGRGPYRVTDPAAIIAASLQADARDAGGLIIDENHSADLAAPLGLPSPARGHIVAMEARPDGVWGQVEWNPAGVALLAERAYRGISPVIIHAADGTVRRIARASLVNYPNLRGLVALNSESDMDLTKLARALGLAETATLDEIIAAVEAMTGAKGKPEEDVALQSELGTILGVDGNRDALIAAARLAVSGKDTLIALQAQVTAQAAELKGIRDAANRRCAGGPHSRWSVHPRVGGEQEIDLGAPFLQGGSSPRGRGTALLTAPRCILRRFIPAWAGNRHP*	mmseqs_cdd	nonviral_gene	C7	6914	140456	147370	GCA_001402715.1|LLVU01000062.1@region_140457_147370@tool_cenote_CDS_0002	.	unmatched_CDS	none	0	0	.
GCA_001402715.1|LLVU01000062.1@region_140457_147370@tool_cenote	cenote	CDS	143284	143739	GCA_001402715.1	LLVU01000062.1	GCA_001402715.1|LLVU01000062.1	GCA_001402715.1_LLVU01000062.1	GCA_001402715.1|LLVU01000062.1	GCA_001402715_1_35	GCA_001402715_1_35@C7	2829	3284	GCA_001402715_1_35_140	GCA_001402715_1_35_140	-	235327	.	PFAM:PF05069.12	Virion-morphogenesis-family	MITIEFRDGKILAGIDRLQDQLGDMTTFMSDLGELLVASTKARFPAGTDPDGTAWTPNSAATLARKTDSRPLFGTSGSLNSQIFSAAGADYVQIGSDRVYAAMMQFGGTKEQWPHLWGDIPARPYLGLSDEDKENILAETRDWLSGAFSGD*	hallmark_hmm	common_virus	C7	6914	140456	147370	GCA_001402715.1|LLVU01000062.1@region_140457_147370@tool_cenote_CDS_0003	persistent	direct	high	455	0.998	GCA_001402715.1_03198
GCA_001402715.1|LLVU01000062.1@region_140457_147370@tool_cenote	cenote	CDS	143736	144068	GCA_001402715.1	LLVU01000062.1	GCA_001402715.1|LLVU01000062.1	GCA_001402715.1_LLVU01000062.1	GCA_001402715.1|LLVU01000062.1	GCA_001402715_1_35	GCA_001402715_1_35@C7	3281	3613	GCA_001402715_1_35_141	GCA_001402715_1_35_141	-	235327	.	.	hypothetical protein	MSKTRVIAVHDHPRGAGRIEFDIDFATGTIDGLVVDPAHEAYVRSVLNDLSAHPDEPAHFAWQQSYPAPDPMHVPKSMAWQLMAIGWTLEGELAKYPPPEADPLPDGALS*	.	hypothetical_protein	C7	6914	140456	147370	GCA_001402715.1|LLVU01000062.1@region_140457_147370@tool_cenote_CDS_0004	persistent	direct	high	332	0.997	GCA_001402715.1_03199
GCA_001402715.1|LLVU01000062.1@region_140457_147370@tool_cenote	cenote	CDS	144076	145632	GCA_001402715.1	LLVU01000062.1	GCA_001402715.1|LLVU01000062.1	GCA_001402715.1_LLVU01000062.1	GCA_001402715.1|LLVU01000062.1	GCA_001402715_1_35	GCA_001402715_1_35@C7	3621	5177	GCA_001402715_1_35_142	GCA_001402715_1_35_142	-	235327	.	PFAM:PF04233.13	minor-capsid-component	MRIRAHKLDGVEYRAAANIGPVIVPTIVVLHDTAGPLTKGSSAAYLASKNTAGVSVHFVVETDGTITQLVPTHRRATHAGASIYHSREGCNAFSIGIEIVNPGRMEPVDRGDGVVRGRAWWGQMFEDPVGILGLVRKATSSHGDGVWMMSMPYLIYNHGNSMEPRQEHLAWHGLVLPRDHPFWLTHAPINGWGCTCYLSGARSPEAARRRGGDPDKALPAGWDAIDPRTGAPKGIDKGWDYAPGASVARDLAGIVDKKAATLPPPIAKDFKDSVRSVVPPAEDPAAQSPKSPEDAIARGKEVLARLRTQATDLAAAEQAGDLTGAAMALQDAVRAELRKLRPVGEAPIALVPGSRKQAKEVMQSVADVMPSDWVQAANAIPLKVHVSETKRGGYLPGNPPQITTSESSTAVHEYLHHLQARLPDLDALFQDLHRQRTKGEPLIQIRKGEWARKDHYYTAYQGREYAFAKPKPALEMLTMALQPVLGSDIKSVRMLRDLTKGDPEMLEMALGVLFYWKV*	hallmark_hmm	common_virus	C7	6914	140456	147370	GCA_001402715.1|LLVU01000062.1@region_140457_147370@tool_cenote_CDS_0005	persistent	direct	high	1556	0.999	GCA_001402715.1_03200
GCA_001402715.1|LLVU01000062.1@region_140457_147370@tool_cenote	cenote	CDS	145721	146014	GCA_001402715.1	LLVU01000062.1	GCA_001402715.1|LLVU01000062.1	GCA_001402715.1_LLVU01000062.1	GCA_001402715.1|LLVU01000062.1	GCA_001402715_1_35	GCA_001402715_1_35@C7	5266	5559	GCA_001402715_1_35_143	GCA_001402715_1_35_143	-	235327	.	PFAM:PF08765.10	late-transcriptional-activator	MLGTTLIFPSNRDKAMAEEFGIERAAEIARTAEHLPRRVPLAKEWIAAVWSNQGLTDAEIARRLHVTDVTVRAWRAKKLWRGLRKAKSADPRQLPLI*	phrogs_hmm	hypothetical_protein	C7	6914	140456	147370	GCA_001402715.1|LLVU01000062.1@region_140457_147370@tool_cenote_CDS_0006	shell	direct	moderate	249	0.847	GCA_001402715.1_03201
GCA_001402715.1|LLVU01000062.1@region_140457_147370@tool_cenote	cenote	CDS	146047	146589	GCA_001402715.1	LLVU01000062.1	GCA_001402715.1|LLVU01000062.1	GCA_001402715.1_LLVU01000062.1	GCA_001402715.1|LLVU01000062.1	GCA_001402715_1_35	GCA_001402715_1_35@C7	5592	6134	GCA_001402715_1_35_144	GCA_001402715_1_35_144	+	235327	.	cd06571	Bac_DnaA_C	MRALQPFEAVAEAALAEWVRSNDDAPTPAAIVQLIAARRQPTKMRSIAELVAVQHGVTFAELVGPMKPPHLVAARRDAVGRMMAEGFSTAQIGRTLNRDARSIRQAKPIERAFRDIADRLTRHPAFAGAYVGNKPTAKPENYGSRAIPLADFLAITAREIAEHNARPGRFALAHVGVNFS*	hhsuite_tools	hypothetical_protein	C7	6914	140456	147370	GCA_001402715.1|LLVU01000062.1@region_140457_147370@tool_cenote_CDS_0007	shell	direct	moderate	533	0.982	GCA_001402715.1_03202
GCA_001402715.1|LLVU01000062.1@region_140457_147370@tool_cenote	cenote	CDS	146938	147369	GCA_001402715.1	LLVU01000062.1	GCA_001402715.1|LLVU01000062.1	GCA_001402715.1_LLVU01000062.1	GCA_001402715.1|LLVU01000062.1	GCA_001402715_1_35	GCA_001402715_1_35@C7	6483	6914	GCA_001402715_1_35_145	GCA_001402715_1_35_145	+	235327	.	TIGR02160	phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA. [Energy metabolism, Other]	MLGLMAPDYLEREVFCRGPEPFMRGVKESLAALGFDLTRYHQESFGPPETAPAPEVEAPEIRFTASGVSTACAPGETVLAAAKRAGLNIPSGCNFGLCGTCKVRKTAGGVQMLHNGGISEDDIAAGCILACGSRPLGKVAVEI*	mmseqs_cdd	nonviral_gene	C7	6914	140456	147370	GCA_001402715.1|LLVU01000062.1@region_140457_147370@tool_cenote_CDS_0008	persistent	direct	high	431	0.998	GCA_001402715.1_03203
GCA_001402715.1|LLVU01000005.1@region_93699_110355@tool_cenote	cenote	CDS	93698	94516	GCA_001402715.1	LLVU01000005.1	GCA_001402715.1|LLVU01000005.1	GCA_001402715.1_LLVU01000005.1	GCA_001402715.1|LLVU01000005.1	GCA_001402715_1_5	GCA_001402715_1_5@C5	1	819	GCA_001402715_1_5_91	GCA_001402715_1_5_91	-	182811	.	PRK11132	serine acetyltransferase; Provisional	MSKIRAKVAAIDPVWMRICEEAHDAVGQEPLLGALIHAGLLHHATMEKALAYRFSLKLASGEMSEQLLREIADDAYGSDPDLGAAARADLVAVHDRDPACHRFLQPILFFKGYQALQSYRIAHWLWRQGRKDMAYFVQMRTSEAFGVDIHPAARIGRGVMIDHAHSIVIGETAVVGDNVSMLHSVTLGGTGKEEQDRHPKIGNGVLIGAGAKVLGNIHVGDNSRIAAGSVVLADVPRCKTVAGVPAKIVGEAGCAQPSVNMDQQLRGCDCEG*	mmseqs_cdd	nonviral_gene	C5	16657	93698	110355	GCA_001402715.1|LLVU01000005.1@region_93699_110355@tool_cenote_CDS_0001	persistent	direct	high	818	0.999	GCA_001402715.1_00823
GCA_001402715.1|LLVU01000005.1@region_93699_110355@tool_cenote	cenote	CDS	94878	98792	GCA_001402715.1	LLVU01000005.1	GCA_001402715.1|LLVU01000005.1	GCA_001402715.1_LLVU01000005.1	GCA_001402715.1|LLVU01000005.1	GCA_001402715_1_5	GCA_001402715_1_5@C5	1181	5095	GCA_001402715_1_5_92	GCA_001402715_1_5_92	-	182811	.	PFAM:PF13550.5	tail-protein	MATILLSAAGAAIGGGFGGTILGLSGAVIGRAVGATLGRVIDQRLLGSGSQSVETGRVDRLRLSSASEGEAVGRLWGRMRVAGQVIWATRFFETAQVEKSGKGAPRATVARYSYSLSLALALCEGEILRVGRVWADGSEIEVSSLNMRVYRGGEDQLPDPKIAAVEGAEAAPAYRGIAYVVIEDLHLAPFGNRVPQFTFEVVRAAQGALAEAEPDLTRGLRAVALIPGTGEYALATTPVYVGTETGITATQGVANQTAPGGQTDLVAALQRLDEELPNCGAVSLVVSWFGDDLRCGACDVKPKVASRQEEGANMPWRVAGLERAGAEEVPRLSSSSVYGGTPADAAVIEAIGALRAAGKAVTFYPFILMEQLAGNGLPDPWSDATGQPALPWRGRITLSVAPGRAGSPDGTAAAVAQVAGFFGTAQPGDFAIAGGQVVYSGPEEWSMRRFILHYAHLCKLAGGVDAFCIGTEMVALTQIRGAANSYPAVAAFRQLAGEVKAILGPGCKIGYAADWSEYWGHAPGNGDRFFHLDPLWADENIDFIGIDNYLPLSDWRDGEDHADAGWGSIYALDYLRANIEGGEYHDWYYAAPEHRDAQIRTPISDGDHDEPWIWRAKDIRNWWLNDHHERVGGVRSEVATAWVPQSKPIWFTEMGCAAIDKGTNQPNKFLDPKSSESSLPHHSDGRRDELIQMQYLRAMTSYWGEAAKNPVSAVYGGPMLDMSRAHVWAWDARPWPQFPLNTALWSDGANYARGHWISGRAVAQPLASVVAEICGLAGITDIDVSGLYGLVRGYTMTGDQTGRAGLQALMLAYGFEVLEREGKLVFRMRDGRIDADLVAADLALGEGGSMVETVRAAEAEIAGRVRLAYVEAEGDFEVRAVEAVFPDVAAGAAAGSELPLALTRAQAQGIVGRWLAEARVARDTARFALPPSQAHLGTGDVVRLDLPEGKRRYRLDRIEQAGLLQVEAVRVEPGIYAPADEVEDPANLRPFAAPVPVRAVFLDLPLMKGDEDPVAPHLAVTATPWPGTVAVWSADEDAGYALNATLGTRAVIGQTLTPLFRAPPGLWDRGAALRVKLASGALESATALRVLNGANAMAIGDGSSDKWEVFQFVEAALVDGKVWEISLRLRGQLGTDALMPEVWPEGSVVVALNGAPEQILLPASARGLARHYRIGSAARSYDDPSFVHRIEAFAGAGLRPFSPCHLRATPGASGWDFRWLRRTRIDGDSWQGYEVPLGETAELYLLRVIEGTAVKRELTVGAASWSYPAALQAADGIAGGFTLEVAQVSDVYGPGLAARITVGA*	common_virus_hmm	common_virus	C5	16657	93698	110355	GCA_001402715.1|LLVU01000005.1@region_93699_110355@tool_cenote_CDS_0002	persistent	direct	high	3914	1.0	GCA_001402715.1_00824
GCA_001402715.1|LLVU01000005.1@region_93699_110355@tool_cenote	cenote	CDS	98793	99245	GCA_001402715.1	LLVU01000005.1	GCA_001402715.1|LLVU01000005.1	GCA_001402715.1_LLVU01000005.1	GCA_001402715.1|LLVU01000005.1	GCA_001402715_1_5	GCA_001402715_1_5@C5	5096	5548	GCA_001402715_1_5_93	GCA_001402715_1_5_93	-	182811	.	TIGR02219	putative phage cell wall peptidase, NlpC/P60 family. Members of this family show sequence similarity to members of the NlpC/P60 family described by pfam00877 and by Anantharaman and Aravind (). The NlpC/P60 family includes a number of characterized bacterial cell wall hydrolases. Members of this related family are all found in prophage regions of bacterial genomes. [Mobile and extrachromosomal element functions, Prophage functions]	MSAIGLRAVAIARDWIGTPYRHQVSVQGAGTDCLGLLRGVWRALYGAEPELVPPYTADWSEPAREEVLWRAAARHLLALPPARGPERPGEVLLFRMRHGAVAKHLGIAAEIGAGASFVHAYTGHGVVESPLSEPWARRIVARFQFPEGGR*	mmseqs_cdd	nonviral_gene	C5	16657	93698	110355	GCA_001402715.1|LLVU01000005.1@region_93699_110355@tool_cenote_CDS_0003	persistent	direct	high	452	0.998	GCA_001402715.1_00825
GCA_001402715.1|LLVU01000005.1@region_93699_110355@tool_cenote	cenote	CDS	99242	100132	GCA_001402715.1	LLVU01000005.1	GCA_001402715.1|LLVU01000005.1	GCA_001402715.1_LLVU01000005.1	GCA_001402715.1|LLVU01000005.1	GCA_001402715_1_5	GCA_001402715_1_5@C5	5545	6435	GCA_001402715_1_5_94	GCA_001402715_1_5_94	-	182811	.	PFAM:PF05100.11	Minor-tail-protein	MAYPQDLKAHLQGGVTTLARAWALARTDGRVLGFTDHDRGLSFEGIAFEPGSGMTAKAVLQGTGLSVDNTESYGALSSEAITEADLLAGRYDGAAVTVWLVNWADPGMRAVIFRGHLGEVSRGAGAFTAELRGLTEALGLDQGRIYHPRCAAVLGDGKCRFDLTKDGYALETALGAIEEAVVLRLAEGAGFEDRWFEKGRLLVLEGAAAGLVGVVKNDRLQADGSRIIELWQRLGADPVAGDRVRIEPGCDKRAETCRLKFDNFLNFRGFPHIPGEDWLVSYPVQSGTNDGGSLFK*	hallmark_hmm	common_virus	C5	16657	93698	110355	GCA_001402715.1|LLVU01000005.1@region_93699_110355@tool_cenote_CDS_0004	persistent	direct	high	890	0.999	GCA_001402715.1_00826
GCA_001402715.1|LLVU01000005.1@region_93699_110355@tool_cenote	cenote	CDS	100132	100764	GCA_001402715.1	LLVU01000005.1	GCA_001402715.1|LLVU01000005.1	GCA_001402715.1_LLVU01000005.1	GCA_001402715.1|LLVU01000005.1	GCA_001402715_1_5	GCA_001402715_1_5@C5	6435	7067	GCA_001402715_1_5_95	GCA_001402715_1_5_95	-	182811	.	PFAM:PF09343.9	glycoside-hydrolase	MAFHEVRFPANLSFGSVGGPERRTEIVTLASGHEERNSPWAHSRRHYDAGVGLRSLDDVERLIAFFEARAGQLHGFRWKDWADHKSCPASRAVAHEDQLIGIGDGVTTAFQLVKTYASGGQSYLRPIVKPVEGTVKLGIAGDHQAEAVNFALDPTTGIVTFNEAPSKGARVTAGFEFDVPVRFDTDRIAVSVQSFQAGDLPQVPVLEVRI*	phrogs_hmm	nonviral_gene	C5	16657	93698	110355	GCA_001402715.1|LLVU01000005.1@region_93699_110355@tool_cenote_CDS_0005	persistent	direct	high	632	0.998	GCA_001402715.1_00827
GCA_001402715.1|LLVU01000005.1@region_93699_110355@tool_cenote	cenote	CDS	100775	101434	GCA_001402715.1	LLVU01000005.1	GCA_001402715.1|LLVU01000005.1	GCA_001402715.1_LLVU01000005.1	GCA_001402715.1|LLVU01000005.1	GCA_001402715_1_5	GCA_001402715_1_5@C5	7078	7737	GCA_001402715_1_5_96	GCA_001402715_1_5_96	-	182811	.	COG5281	Phage-related minor tail protein  [Mobilome: prophages, transposons]. 	MIEVDGLDALGRQAAELEQALGGAEGVAASFNDELGRMRESLTYTGREVGSLSQSFGRSVRRAFDGVIFDGMKLSDALSSVAEGMAQAAYSVAMRPVQEAIGGALASSISGMLGGVFGFAQGGAFSQGRVMPFAKGGVVSSPTTFPMRGATGLMGEAGPEAILPLARGADGRLGVQAGGGRVINVVMNVTTPDAAGFARSQGQIAAQVNRALARGSRNA*	mmseqs_cdd	common_virus	C5	16657	93698	110355	GCA_001402715.1|LLVU01000005.1@region_93699_110355@tool_cenote_CDS_0006	persistent	direct	high	659	0.998	GCA_001402715.1_00828
GCA_001402715.1|LLVU01000005.1@region_93699_110355@tool_cenote	cenote	CDS	101645	101971	GCA_001402715.1	LLVU01000005.1	GCA_001402715.1|LLVU01000005.1	GCA_001402715.1_LLVU01000005.1	GCA_001402715.1|LLVU01000005.1	GCA_001402715_1_5	GCA_001402715_1_5@C5	7948	8274	GCA_001402715_1_5_97	GCA_001402715_1_5_97	-	182811	.	pfam11836	Phage tail tube protein, GTA-gp10. This is a family of phage tail tube proteins.	MANPWAGEVEVVLGAERRVAKLTLGALAELEAGLGEASLMDLVRRFESGAFSSRDVLALIVAGLRGGGWEGRAEDLRTVEIGGGPVGAARIAAELLARAFTVPGQGGT*	mmseqs_cdd	nonviral_gene	C5	16657	93698	110355	GCA_001402715.1|LLVU01000005.1@region_93699_110355@tool_cenote_CDS_0007	persistent	direct	high	326	0.997	GCA_001402715.1_00830
GCA_001402715.1|LLVU01000005.1@region_93699_110355@tool_cenote	cenote	CDS	101979	102392	GCA_001402715.1	LLVU01000005.1	GCA_001402715.1|LLVU01000005.1	GCA_001402715.1_LLVU01000005.1	GCA_001402715.1|LLVU01000005.1	GCA_001402715_1_5	GCA_001402715_1_5@C5	8282	8695	GCA_001402715_1_5_98	GCA_001402715_1_5_98	-	182811	.	PFAM:PF06199.10	tail-tube-protein	MAAQNGKDLLIKLDLTGSGQFETIAGLRATRISFNAETVDVTSLESQGGWRELLGGAGVRSASISGAGVFKDADTDERARQIFFDGEVPEFQVIIPDFGIVQGPFMITSIDYAGSHNGEASYELALASAGALGFTAI*	hallmark_hmm	common_virus	C5	16657	93698	110355	GCA_001402715.1|LLVU01000005.1@region_93699_110355@tool_cenote_CDS_0008	persistent	direct	high	413	0.998	GCA_001402715.1_00831
GCA_001402715.1|LLVU01000005.1@region_93699_110355@tool_cenote	cenote	CDS	102452	102859	GCA_001402715.1	LLVU01000005.1	GCA_001402715.1|LLVU01000005.1	GCA_001402715.1_LLVU01000005.1	GCA_001402715.1|LLVU01000005.1	GCA_001402715_1_5	GCA_001402715_1_5@C5	8755	9162	GCA_001402715_1_5_99	GCA_001402715_1_5_99	-	182811	.	PDB:5A21_G	tail-completion-protein	MSYAVAGALQAAVYQHLRADAVLAALVGTAVYDAVPPGTLVGTYVSLGPEDVADASDKTGEGAVHDFVISVITDAAGFATAKAAAAAVSDALVGADLALARGRLVGLWFLRAKARRVEKADTRRIDLVFRARVEG*	hallmark_hmm	common_virus	C5	16657	93698	110355	GCA_001402715.1|LLVU01000005.1@region_93699_110355@tool_cenote_CDS_0009	persistent	direct	high	407	0.998	GCA_001402715.1_00832
GCA_001402715.1|LLVU01000005.1@region_93699_110355@tool_cenote	cenote	CDS	102856	103194	GCA_001402715.1	LLVU01000005.1	GCA_001402715.1|LLVU01000005.1	GCA_001402715.1_LLVU01000005.1	GCA_001402715.1|LLVU01000005.1	GCA_001402715_1_5	GCA_001402715_1_5@C5	9159	9497	GCA_001402715_1_5_100	GCA_001402715_1_5_100	-	182811	.	CDD:pfam05521	Head-Tail-Connector-protein	MSMPRLNRKLVLEEALRVADGAGGHWLDWVAKGVLWAEVTAGSGTERAGEFVTLASVPWTIVVRAAPVGAASRPKPEQRFREGSRIFRILAVAERDREGHYLTCFAREEVVA*	hallmark_hmm	common_virus	C5	16657	93698	110355	GCA_001402715.1|LLVU01000005.1@region_93699_110355@tool_cenote_CDS_0010	persistent	direct	high	338	0.997	GCA_001402715.1_00833
GCA_001402715.1|LLVU01000005.1@region_93699_110355@tool_cenote	cenote	CDS	103191	103784	GCA_001402715.1	LLVU01000005.1	GCA_001402715.1|LLVU01000005.1	GCA_001402715.1_LLVU01000005.1	GCA_001402715.1|LLVU01000005.1	GCA_001402715_1_5	GCA_001402715_1_5@C5	9494	10087	GCA_001402715_1_5_101	GCA_001402715_1_5_101	-	182811	.	CDD:cd08054	Head-Tail-Connector-Protein	MMLNEVTAVPSAALPVAEFRDHLRLGTGFADLGAEDAALLSYLRAAIAAIEGRTAKALISRAFRLALTGWRWGDMQTLPIAPVSAVTALRLVDAAGAETPVAAGWRLVPDMARPRIEALGAALPAIPGGGRVEIDFTAGFGASWSALPVDLAQAVFLLAAQYYELRHDGAAEGGAMPFGVMALIERWRTVRVLGGRP*	hallmark_hmm	common_virus	C5	16657	93698	110355	GCA_001402715.1|LLVU01000005.1@region_93699_110355@tool_cenote_CDS_0011	persistent	direct	high	593	0.998	GCA_001402715.1_00834
GCA_001402715.1|LLVU01000005.1@region_93699_110355@tool_cenote	cenote	CDS	103959	105155	GCA_001402715.1	LLVU01000005.1	GCA_001402715.1|LLVU01000005.1	GCA_001402715.1_LLVU01000005.1	GCA_001402715.1|LLVU01000005.1	GCA_001402715_1_5	GCA_001402715_1_5@C5	10262	11458	GCA_001402715_1_5_102	GCA_001402715_1_5_102	-	182811	.	CDD:TIGR01554	phage-major-capsid-protein,-HK97-family	MKTETKARAGTGMPEGADPVAEVKTALAGFLREVKGFQDDVKTRLQQQEERVTMLQTKTFAGRHALATAATEEAPHQKAFAAYLRTGDDDGLRGLCLEGKALNSAVAAEGGYLVDPQTSETIRGVLRSTASLRQIASVVNVEATSFDVLVDKTDMGSGWASETAALSETATPQIDRISIPLHELAAMPKASQRLLDDSAFDIETWLANRIADKFARAEAAAFISGDGVDKPTGFLTKAKVANGAWAWGSLGYVATGAAGDFAAVNASDAVVDLVYALGAEYRANASFVMNSKTAGAVRKMKDADGRFLWADSLAAGEPARLMGYPVLIAEDMPDIAANAYAIAFGDFGNGYTIAERPDLRVLRDPFSAKPHVLFYASKRVGGDVSDFAAIKLLKFAAS*	hallmark_hmm	common_virus	C5	16657	93698	110355	GCA_001402715.1|LLVU01000005.1@region_93699_110355@tool_cenote_CDS_0012	persistent	direct	high	1196	0.999	GCA_001402715.1_00835
GCA_001402715.1|LLVU01000005.1@region_93699_110355@tool_cenote	cenote	CDS	105187	105741	GCA_001402715.1	LLVU01000005.1	GCA_001402715.1|LLVU01000005.1	GCA_001402715.1_LLVU01000005.1	GCA_001402715.1|LLVU01000005.1	GCA_001402715_1_5	GCA_001402715_1_5@C5	11490	12044	GCA_001402715_1_5_103	GCA_001402715_1_5_103	-	182811	.	PFAM:PF04586.16	prohead-serine-protease	MERGESGLERKFCGAQPVQLQEGARIEGYASLFGLPDQGGDVVAQGAYAKSLAAIAARGGSVKMLWQHDPAQPIGVWDEIREDARGLWVKGRLLPEVARAREALALIAAGAIDGLSIGYRTIAAEKDAKGQRLLAELELWEVSLVTFPMLREARVAAKGETLDAAIWRDLARALSAATAELAAR*	hallmark_hmm	common_virus	C5	16657	93698	110355	GCA_001402715.1|LLVU01000005.1@region_93699_110355@tool_cenote_CDS_0013	persistent	direct	high	554	0.998	GCA_001402715.1_00836
GCA_001402715.1|LLVU01000005.1@region_93699_110355@tool_cenote	cenote	CDS	105752	105985	GCA_001402715.1	LLVU01000005.1	GCA_001402715.1|LLVU01000005.1	GCA_001402715.1_LLVU01000005.1	GCA_001402715.1|LLVU01000005.1	GCA_001402715_1_5	GCA_001402715_1_5@C5	12055	12288	GCA_001402715_1_5_104	GCA_001402715_1_5_104	-	182811	.	.	hypothetical protein	MVVGGSRFLKEPFEVHEQRFEATERIMELQFTQVERRLERIEVMIERLEKRLFMTVYGVIAVILTQAVQGILDYAPK*	.	hypothetical_protein	C5	16657	93698	110355	GCA_001402715.1|LLVU01000005.1@region_93699_110355@tool_cenote_CDS_0014	persistent	direct	high	233	0.996	GCA_001402715.1_00837
GCA_001402715.1|LLVU01000005.1@region_93699_110355@tool_cenote	cenote	CDS	105989	107179	GCA_001402715.1	LLVU01000005.1	GCA_001402715.1|LLVU01000005.1	GCA_001402715.1_LLVU01000005.1	GCA_001402715.1|LLVU01000005.1	GCA_001402715_1_5	GCA_001402715_1_5@C5	12292	13482	GCA_001402715_1_5_105	GCA_001402715_1_5_105	-	182811	.	PDB:6TE9_A	Portal-Protein	MGLNFFRKAAPEAQVQTAVERKASVTGRIVAMASGAGRPVWGPRDTVSLMRTGFSGNPVGFRSVKLIAEAAAAVPLICQDAERRYEIHPVLDLLRRPNAGQGRAELFEALIGQILLSGNGYLEAVCPEPGVPRELHVLRSDRMAVVPGADGWPVAYDYTVAGRKHRFDMTGHPDPICHIKSFHPTDDHYGLSPMQAAAVAFDVHNAASAWSKALLDNAARPSGAIIYKGADGQGVLAPEQYERLIFEMETHHQGARNAGRPMLLEGGLDWKPMGFSPSDMEFHETKAAAAREIALAFGVPPMLIGIPGDATYANYAEANRAFYRLTVLPLLTRVSAALAWWLSGYLGAQIELKPDLDQVPALAVERDQLWARIGAAGFLSDAEKRVLLGLPPVAEG*	hallmark_hmm	common_virus	C5	16657	93698	110355	GCA_001402715.1|LLVU01000005.1@region_93699_110355@tool_cenote_CDS_0015	persistent	direct	high	1190	0.999	GCA_001402715.1_00838
GCA_001402715.1|LLVU01000005.1@region_93699_110355@tool_cenote	cenote	CDS	107369	108787	GCA_001402715.1	LLVU01000005.1	GCA_001402715.1|LLVU01000005.1	GCA_001402715.1_LLVU01000005.1	GCA_001402715.1|LLVU01000005.1	GCA_001402715_1_5	GCA_001402715_1_5@C5	13672	15090	GCA_001402715_1_5_106	GCA_001402715_1_5_106	-	182811	.	CDD:COG5323	Large-Terminase	MLKNFADKLPVSGPDASLTSTQPGLRSGAAWLASATPQEVDAFLGGLGDNALLALPWIFEFWALPHQLPPVGAWKSWVIMGGRGAGKTRAGAEWVRAQVEGAGPADAGPAHRVALVGETFDQVRDVMIFGESGILACSPPDRRPEWEATKRRLVWANGATAQAFSAQEPEALRGPQFDAAWVDELAKWRRAEETWDMLQFALRLGRHPQQVITTTPRNVGVLKAILNNPSTVVTHAPTEANRAYLAESFLAEVQARYAGTRLGRQELEGVLLEDVEGALWTTAQLEGLRLAAPPAMDRVVVALDPAVTGGAGSDECGIVVAGAVTRGPVQDWRGYVLEDASVRGRPTDWARAAIAAMERWGAEKLVAEVNQGGEMVESVLRQIDPLVPFRALRASRGKSARAEPVAALYEQGRVKHCRDGRLGALEDQMCRMTVQGYAGKGSPDRVDALVWALTELILEPAAHWRRPQVRGL*	hallmark_hmm	common_virus	C5	16657	93698	110355	GCA_001402715.1|LLVU01000005.1@region_93699_110355@tool_cenote_CDS_0016	persistent	direct	high	1416	0.998	GCA_001402715.1_00839
GCA_001402715.1|LLVU01000005.1@region_93699_110355@tool_cenote	cenote	CDS	109182	110354	GCA_001402715.1	LLVU01000005.1	GCA_001402715.1|LLVU01000005.1	GCA_001402715.1_LLVU01000005.1	GCA_001402715.1|LLVU01000005.1	GCA_001402715_1_5	GCA_001402715_1_5@C5	15485	16657	GCA_001402715_1_5_107	GCA_001402715_1_5_107	-	182811	.	COG1559	Cell division protein YceG, involved in septum cleavage [Cell cycle control, cell division, chromosome partitioning]. 	MMWRNIVSNFLTLLIVLMVVSGGMVTWAKRQYDGPGPLAAGMCLRVEPGAKFRDVSETLKEKGAISSAYIFRAGADYDQKAGKLKVGSYLIAPGASMAGIVDQITAGGPSSCGTELNYRIGVNGQQMILRELDPALGDYVETAKFDPKREAAPEGFAEDAAQSDVRLRVTLAEGVTSWQVVEALKSADFLTGEVAKLPPEGSLSPDSYEMKRGAKRADLIAEMTERQKAVLAEAWAARAPGLPYKTPEEALVMASLVEKETGVAEERARVASVFVNRLAQGMRLQTDPAVIYGVTKGQGVLGRGLRQSELRRETPYNTYVIDGLPPGPICNPGTQAIRAALNPDSTRFLYFVADGTGGHAFAETITEHNRNVARWREIEKTLKPGASDGN*	mmseqs_cdd	nonviral_gene	C5	16657	93698	110355	GCA_001402715.1|LLVU01000005.1@region_93699_110355@tool_cenote_CDS_0017	persistent	direct	high	1172	0.999	GCA_001402715.1_00840
GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote	cenote	CDS	85206	85664	GCA_001402715.1	LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715.1_LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715_1_6	GCA_001402715_1_6@C3	1	459	GCA_001402715_1_6_79	GCA_001402715_1_6_79	+	134937	.	COG3393	Predicted acetyltransferase, GNAT family  [General function prediction only]. 	MIEIELSSPLAPELALLHERHTVAMHADTPPESIHMLPASALAAPGIWFYVLRFEGRPVGMGALKRIDAHHAEVKSMHVLSEMRGMGLARALVVHLVGEARRLGFARVSLETGSQDSFGPARALYLAEGFVECGPFEGYGHDPNSVFMTRAL*	mmseqs_cdd	nonviral_gene	C3	49732	85206	134938	GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote_CDS_0001	persistent	direct	high	458	0.998	GCA_001402715.1_00987
GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote	cenote	CDS	85872	87068	GCA_001402715.1	LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715.1_LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715_1_6	GCA_001402715_1_6@C3	667	1863	GCA_001402715_1_6_80	GCA_001402715_1_6_80	+	134937	.	PDB:1Z19_B	Integrase	MATLEMTFTKGALDKAAHTGGAATRYRDSRYPNLYLEVGARSKTWRFRKFWKGQNFTETLGTWPAMTVIEAAQTAAEFNTRIEDAGVIVRNDAPRNAPEITLRVALEQHVTKALDPRQRHVSEETAAGYAAMLRLHTPRWLDMPITDITRQMVNEKIKAMANKPTTASCLLRALGAIYGTQLAYRDDGYEHDPTYRVKGYEARTRELLFDEAKRWPAMEAISKVPNMTRRAAWLALLFTGFRMCNIRALRWQDIDFDEKMLTLGRMKNGLRRTFPLSDAALDVFRLTPRTHDQIVFEGRHYNKPITGLRQIDIDGNDVDNGGVLRPHDTRHLFSSAAAKAGLSGPVINWMRGDVTIMQGAAGRYMHDLGSHADANAIANQIVSKSAPALSVEDMLRRA*	common_virus_hmm	common_virus	C3	49732	85206	134938	GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote_CDS_0002	shell	direct	high	1196	0.999	GCA_001402715.1_00988
GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote	cenote	CDS	87245	87478	GCA_001402715.1	LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715.1_LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715_1_6	GCA_001402715_1_6@C3	2040	2273	GCA_001402715_1_6_81	GCA_001402715_1_6_81	+	134937	.	PFAM:PF12964.6	HTH-DNA-binding-protein	MTPDSLLAELRTAIEAQSFPEIMTPAQAAQFLGVSEDYLRDHRKRRSGPPYSQPASKIVRYMRSDLIAWLNRSRIAA*	phrogs_hmm	hypothetical_protein	C3	49732	85206	134938	GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote_CDS_0003	shell	direct	high	233	0.996	GCA_001402715.1_00989
GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote	cenote	CDS	87633	88031	GCA_001402715.1	LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715.1_LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715_1_6	GCA_001402715_1_6@C3	2428	2826	GCA_001402715_1_6_82	GCA_001402715_1_6_82	+	134937	.	.	hypothetical protein	MNRQAKTKAWISEIEVYDQLGGHVLALQCQTPDLKPFELTLVFNPQSPRNSTRGHNWWLIQKMIGDGFAAEFEAVHFDAKALAAKVRNTFHWFRLDVDGKSIWLRDVRPCEPFALHDETAAILALEELFHVR*	.	hypothetical_protein	C3	49732	85206	134938	GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote_CDS_0004	shell	direct	high	398	0.997	GCA_001402715.1_00990
GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote	cenote	CDS	88021	88878	GCA_001402715.1	LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715.1_LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715_1_6	GCA_001402715_1_6@C3	2816	3673	GCA_001402715_1_6_83	GCA_001402715_1_6_83	+	134937	.	PFAM:PF09250.10	DNA-primase	MFADVAAKMVPNGWHNIIPLTIDTGQKKPAVKWAAYQHEDIPLDTLREWYRGRMGRMPLTGMVFGECREIVALDIDLTDPALNRRITEIGGYDCGIQSEFVRVGNHPKYMAFFRGAVRSQKLNGVEVFGSSGQVAIFGTHPTTKKAYDWPGRSLLDVTPGDLPEVTQEQVTAWLDTIKPLLETRDHHGRKLGWTGIDELRESLRKDGIDAAQRAIIGLHDGSRHPTCLTVTAWLVSQGYSPEDIATFIENNFPAHLRTDDWRKLRPRIRQMAEDAVKKFFGEEKW*	phrogs_hmm	hypothetical_protein	C3	49732	85206	134938	GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote_CDS_0005	shell	direct	high	857	0.999	GCA_001402715.1_00991
GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote	cenote	CDS	88878	90590	GCA_001402715.1	LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715.1_LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715_1_6	GCA_001402715_1_6@C3	3673	5385	GCA_001402715_1_6_84	GCA_001402715_1_6_84	+	134937	.	COG5519	Uncharcterized protein, DUF927 family [Function unknown]. 	MEDITMRTPENVPAEPLVITRYDLDSKTSIEIREDGVWFIESKVSKAGKAYDETVRVASSIIDIEGLVDPIDSEVDAGLLVRIDDRRATVKREDLIQAQDIGKWLAARKAYFNPKHLSLLARMFMETRPPEVIGYTRNGWQRNGAFVVGDTVLLGVGHVLKTEANLAVYDRRSTFDDWEREVLSRAQQKPAWLFAILVGLSSVLLEPLGIETGTAFNAYGPSGSGKTAALKAAAGCWGRPDASGCLKSFITTENALEGLFEGGNGIGLSLDELKTANKNILGQFAYLFGNGMGKERMKSNAEMQRRRRWLLNCIMSSEKSVEGIFEAMEQQQAAGMVTRLVDIDMTDWLPIIDGAAVNEFEAMLRMHYGTAGPEFVRRVVGMADLKERHGRAAQALYAGDDPKLGRAANAFAQLKLTGEVMGIDTAVVDQVWAQWSSEVREVFDDDLQIGRAVLAFIERNLRVSIMQLAEEDGDDDGSPFGQDEGEIGNSYKERDGWFDSEFVYLRAEAMAKIMDGFGRARLYGWLHLRGILHRPAKGDKWTVRVPRLAHRPSALRIDLTRLQDVVGSGE*	mmseqs_cdd	nonviral_gene	C3	49732	85206	134938	GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote_CDS_0006	shell	direct	high	1712	0.999	GCA_001402715.1_00992
GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote	cenote	CDS	91243	91668	GCA_001402715.1	LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715.1_LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715_1_6	GCA_001402715_1_6@C3	6038	6463	GCA_001402715_1_6_85	GCA_001402715_1_6_85	+	134937	.	.	hypothetical protein	MKTEYLVGSSWLTRDHMRNCDVYPEYLNRIATFEQRLGAKLVRPRHANWTFFGDLRGHRSHYTHLGFEWTDHPAAFDGGNMRYLVTQPYLGTQDWQTCPKIDLARHWAGVMGFDTFEALDPSLGFWNPPACHVFVLTKARP*	.	hypothetical_protein	C3	49732	85206	134938	GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote_CDS_0007	shell	direct	high	425	0.998	GCA_001402715.1_00993
GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote	cenote	CDS	91930	92199	GCA_001402715.1	LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715.1_LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715_1_6	GCA_001402715_1_6@C3	6725	6994	GCA_001402715_1_6_86	GCA_001402715_1_6_86	+	134937	.	.	hypothetical protein	MTFSATLSGTTATIVLVNLNSTANLKIDGATNLGNELLAFVNDPSTAPVDNTPAYQVYPVETGLRITAMHGHIDLPWRWITPVANALNA*	.	hypothetical_protein	C3	49732	85206	134938	GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote_CDS_0008	shell	direct	high	269	0.996	GCA_001402715.1_00994
GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote	cenote	CDS	92203	92988	GCA_001402715.1	LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715.1_LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715_1_6	GCA_001402715_1_6@C3	6998	7783	GCA_001402715_1_6_87	GCA_001402715_1_6_87	+	134937	.	.	hypothetical protein	MGDSTPEVKLAAAILAQAFSDMTTTDSRDGESADTAAVAAIRFLTDRAGTSAQWRNLWCAAVNLDGDRFAARVRKLLDGEIEPTVEMRGRAHISAFDKGIARARERWARIKPAAPKAPPTPARPPTIKRPSPPPAAPVTRPTIEPEDVDLRHVPDDPFFVSQSGHVVASRPWSDGERSRILGPLPPFHSKAGQLIWQISQRSRSGKSAIETLGHTTDAAIRMVKDTLPQCDVLWSAKGERLPDYQLNAGLRLYLKQLPKAA*	.	hypothetical_protein	C3	49732	85206	134938	GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote_CDS_0009	shell	direct	high	785	0.999	GCA_001402715.1_00995
GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote	cenote	CDS	93131	93763	GCA_001402715.1	LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715.1_LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715_1_6	GCA_001402715_1_6@C3	7926	8558	GCA_001402715_1_6_88	GCA_001402715_1_6_88	+	134937	.	.	hypothetical protein	MSENEKQMAAFIEALKPHIQSLVEEQLGGFKKHAEKLLDEVQDAKRAAKADPLFEKLEQQERDRRRESLNLVTQPDGSVRLASGKGDHGNAVVLDRESARNPQKYREAKAAAAARGVPLVIAEDGIDPTIRNTDRREVMQSKVFTFDDRHEMVRWLRADMQTDSGLVNRRLAAEREGFKVRTFHTLDDLPAHARQKFEMMEAAANAQADS*	.	hypothetical_protein	C3	49732	85206	134938	GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote_CDS_0010	shell	direct	high	632	0.998	GCA_001402715.1_00996
GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote	cenote	CDS	93744	94145	GCA_001402715.1	LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715.1_LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715_1_6	GCA_001402715_1_6@C3	8539	8940	GCA_001402715_1_6_89	GCA_001402715_1_6_89	+	134937	.	.	hypothetical protein	MRKLTPEDQACLEAARRIVCGDQDDILVFEDGSLLVHTAHFKLRPSRDATDALIIATAKVMKLHLRGVDLGDLREKLLGRDVSEDLADFANFVHEHLVSFSVEDWDAIRARAGWYAEFNVETALPDTDKAGDS*	.	hypothetical_protein	C3	49732	85206	134938	GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote_CDS_0011	shell	direct	high	401	0.998	GCA_001402715.1_00997
GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote	cenote	CDS	94147	94725	GCA_001402715.1	LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715.1_LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715_1_6	GCA_001402715_1_6@C3	8942	9520	GCA_001402715_1_6_90	GCA_001402715_1_6_90	+	134937	.	PFAM:PF10654.8	DNA-binding-protein	MQGGNKNSGRRAVIDMRPDKQEIIKDIVLGRRTLTEIAKRIGVDYTTIQRYRDSKITEEMRRSIMAEQRIRQVEAETEVINQDRMDVATTYESLARRVEKLITKAEANEDDAFALAAMEGLRKVLRDIATMQGKLATALTVNVTLAEAKEWVTLRTILQEVCDEVPAAREPLLRRMRHHVLSVTREDAGVGI*	phrogs_hmm	hypothetical_protein	C3	49732	85206	134938	GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote_CDS_0012	shell	direct	high	578	0.998	GCA_001402715.1_00998
GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote	cenote	CDS	94706	95500	GCA_001402715.1	LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715.1_LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715_1_6	GCA_001402715_1_6@C3	9501	10295	GCA_001402715_1_6_91	GCA_001402715_1_6_91	+	134937	.	PFAM:PF03354.14	Terminase	MRALAFDGFRQWCEQVERDLDPGAQMLHFLRQEVPSATEAEWYQVEALTSTASTLALNICRQAGKSSTLAAMGVRELQAGGTTIALCPAERQVRELTRKVQLYLRATDLIVERGTQSEIECNTGGRFIAVPASGATIRGYTASRLLVDEAAWIQDDESIITALLPMLTDNGTVVYASTPAGRNNFFARLFLDRKPNDGIHRITVPGTSIPRLASRVERLRQQLSATRFRQEVLGEFLADGTSYFDLSAIEQATNPQEGAVCPRM*	hallmark_hmm	common_virus	C3	49732	85206	134938	GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote_CDS_0013	shell	direct	moderate	785	0.987	GCA_001402715.1_00999
GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote	cenote	CDS	95485	96213	GCA_001402715.1	LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715.1_LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715_1_6	GCA_001402715_1_6@C3	10280	11008	GCA_001402715_1_6_92	GCA_001402715_1_6_92	+	134937	.	PDB:4IDH_A	Large-Terminase	MSAHVIPKLDLIYLPDGRVVNETNQDPAIPRVTGYSRFQIAADLGQANDYSAVVVIKDEALPIVDDGAVIVGPRKRTVVYADRFRGVSYVAVVDHLIRLTNAPPFGGKSELAIDGTSIGRVVSDMLWDQNIDHKAVQMTGGQDWTRKGRYVNAGKTFMIENLAVLFAAGEIRFAHDLPLRAEIEQDLASFTTQTTAAGNQIITQSRSAAGHGDLGIALIVGAFATQYLSNQVVGQFKLRGAF*	hallmark_hmm	common_virus	C3	49732	85206	134938	GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote_CDS_0014	shell	direct	high	728	0.999	GCA_001402715.1_01000
GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote	cenote	CDS	96443	96877	GCA_001402715.1	LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715.1_LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715_1_6	GCA_001402715_1_6@C3	11238	11672	GCA_001402715_1_6_93	GCA_001402715_1_6_93	+	134937	.	PFAM:PF09607.9	transposase	MLDEKEGGDVVVWGIPVITADNGRRIWPDELKAMAVKKIEAGTKIVTVAKEIGANESLVAKWVRAELPELPRRGRPQGKSASERNAPQFVEVMAPSEPVRATRQTGTPDTAACQIRIGDAEISVGGDFPAEQLAEILRAVRASQ*	phrogs_hmm	hypothetical_protein	C3	49732	85206	134938	GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote_CDS_0015	cloud	direct	high	434	0.998	GCA_001402715.1_01001
GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote	cenote	CDS	96874	97224	GCA_001402715.1	LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715.1_LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715_1_6	GCA_001402715_1_6@C3	11669	12019	GCA_001402715_1_6_94	GCA_001402715_1_6_94	+	134937	.	NF033819	IS66 family insertion sequence element accessory protein TnpB. The IS66 family insertion sequence element encodes a DDE transposase TnpC, and two accessory proteins, TnpA and TnpB. It has been assumed that the TnpA, TnpB, and TnpC proteins are produced independently in appropriate amounts and form a complex, which acts as a transposase to promote the transposition of an IS66 family element.	MSYHTPSYRIYLATEPIDFRKGMDGLVAHVASQFQLDPFDGAIWVFRSRRADKLKMIVWDGTGLVLTMKRLDGKRFVWPKAQSGPMMLNQVQFDALFAGVDWRGIAVNAPRKPVIA*	mmseqs_cdd	nonviral_gene	C3	49732	85206	134938	GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote_CDS_0016	cloud	direct	high	350	0.997	GCA_001402715.1_01002
GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote	cenote	CDS	97301	98401	GCA_001402715.1	LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715.1_LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715_1_6	GCA_001402715_1_6@C3	12096	13196	GCA_001402715_1_6_95	GCA_001402715_1_6_95	+	134937	.	KOG2004	KOG2004, Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]	MLRHKILLVKYPSDQTQKSIELRLSEHLKNLRRAMIHVELDAIRDEDPPRPTGPEVDIIIKLEDADCRKIARRAKRLIERREAASGLAHLRKEDRDRLAALRDGVNLIRLPSEHRADEIAAELHAEYPWMAPATEVVWHALRKSVREGWPGIRLPPLLLDGPPGIGKSTWARHLAAALRMPSMSVEATVENASFGVLGCQRGWATAGPGRLLQLILQERVGNPIVVIDELEKAGRVTGTNGGSYDLCGGLLPLLEPATASHWTCPYFQVPFDLGQVSWVMTVNATRPLPEPLLSRCPPIRLPHLTTRDLTGFARRQGARRGLSDVGIEVIVEAIEASAGPVQPISLRTVMRMIARAETLEAGPRQH*	mmseqs_cdd	nonviral_gene	C3	49732	85206	134938	GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote_CDS_0017	cloud	direct	high	1100	0.999	GCA_001402715.1_01003
GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote	cenote	CDS	98453	98692	GCA_001402715.1	LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715.1_LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715_1_6	GCA_001402715_1_6@C3	13248	13487	GCA_001402715_1_6_96	GCA_001402715_1_6_96	+	134937	.	.	hypothetical protein	MAFSFEDRARQKAEARARDEDRLARGEISAADLQKENAHFARALGGQNGPLRVGFPVKGKPGKRRYVEFPPNKLPKDDS*	.	hypothetical_protein	C3	49732	85206	134938	GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote_CDS_0018	cloud	direct	high	239	0.996	GCA_001402715.1_01004
GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote	cenote	CDS	99085	100287	GCA_001402715.1	LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715.1_LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715_1_6	GCA_001402715_1_6@C3	13880	15082	GCA_001402715_1_6_97	GCA_001402715_1_6_97	+	134937	.	pfam13289	SIR2-like domain. This family of proteins are related to the sirtuins.	MFEKLPAGADAYEYWRQKLDDDMVAIGSVLAEMAFEWAWKEGRNHFPPEYYSSRVNKDIFLKHMVCGHIQTVTPRTKDVTGGDLEDELAAFAEIKPHAIITTNYDMFLEQVFDGYEPVSGQTILRYNTNSFGEIFHIHGDVSNPPSIVLTRADYDEWSEKKKYVSAKLLTYFAEHPVFIMGYGLGDPNVKSILRDIGELVAGEDGLIPNVYQIVWRPDRIERHPPDQAIFAVDGKEYRIRAIHTNEFDWIFRALKSQSALKSINPKLVRALAARTMKLVRHDIPSGAVEVNYETLEKVADEKDFLPTLLGITAVSNPNFSHPLTISQLAQRVGLPNWQALNKLIHRVREEKGIDLRSSDNRYQCRIKTGTKATSVARKWSHDAVSLFKKVAAGEKYDLAM*	mmseqs_cdd	nonviral_gene	C3	49732	85206	134938	GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote_CDS_0019	shell	direct	moderate	1136	0.944	GCA_001402715.1_01005
GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote	cenote	CDS	100602	101603	GCA_001402715.1	LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715.1_LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715_1_6	GCA_001402715_1_6@C3	15397	16398	GCA_001402715_1_6_98	GCA_001402715_1_6_98	+	134937	.	.	hypothetical protein	MTVFTLTRPTIYQAPKGLKFEEFKSLIPDSGRRRLLCTHGDFDTRAALLGTKIEDHWEPEVKETWMRNHAAIMKGLAYEFGENEIIEKSERFIEIDTKPMSIISYHNEFFAQVRSAYVMGHFYPSLVGACALGERILNHLIIDMRPMFQNTAEYQKVYRKNSFDNWDAPISTLEAWGILLPEVAKEFRELKVLRHRSIHFNKSTYETLRKDSISAVLHMRKIIDCQFGTWGIRPWFISGTKGSTFVAKDFELHPFVRTYFAPQFPYVGPLFGIRNFEGHGLEVMDVPDYGDGEWTDEEFAQQFNNRNEDKVIKEPPEMILAEDAPLFNKQPSK*	.	hypothetical_protein	C3	49732	85206	134938	GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote_CDS_0020	shell	direct	high	1001	0.999	GCA_001402715.1_01006
GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote	cenote	CDS	101889	102443	GCA_001402715.1	LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715.1_LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715_1_6	GCA_001402715_1_6@C3	16684	17238	GCA_001402715_1_6_99	GCA_001402715_1_6_99	+	134937	.	.	hypothetical protein	MEHLNEFNQELLADIREESAVSGLDAQDLAFERMCSTLEAEGELETSDRIKYRGAASGKTLRIDGHGGDPRDAEGILSVVVCELFEDDAPVSVNAADVKKLFGHLINFVAACRRREFRDQLPLGTPEFGTATMIAEAWPAVSKVKLILVTNGAYNARTDAVLAGKIDDIPVTYNIWDLGRLHRV*	.	hypothetical_protein	C3	49732	85206	134938	GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote_CDS_0021	shell	direct	high	554	0.998	GCA_001402715.1_01007
GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote	cenote	CDS	102471	104003	GCA_001402715.1	LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715.1_LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715_1_6	GCA_001402715_1_6@C3	17266	18798	GCA_001402715_1_6_100	GCA_001402715_1_6_100	+	134937	.	pfam10592	AIPR protein. This family of proteins was identified in as an abortive infection phage resistance protein often found in restriction modification system operons.	MNFADDFGGALPALAASGPETALPAYLAVINGRQLADLYDKWGARLLESNIRSFIQARRKSVNEGIRDTIKGEPEMFFSYNNGLSATADSVETVVDGAGVRILSAKNLQIVNGGQTTASLHAARKHSPDALANIHVQMKLTVVPAEASEQVVPNISKFANSQNKVSAADFFSNHPFHMRMEGYSRRVFAPPAQGASRQTRWFYERARGQYQVERNKLGTADRRRFDNEHPKSQLFSKTDLAKVELSFRMKPDTVSKGAQKNFAAFASDIGEAWSASDRKYDETWFKRLVAKVIIFRALERAIPKQEWYPGGYRANIVTYGIAKMVQDADEKGKLLDLDSVWNAQQVPDVMMAALLASCEAAASVITVPESGIRNITEWAKKQACWAAVMRLEVDHAENFDDCLVEPQDANAAQRDGRREAAMVSGIEAQAKVIEHGGAFWERLRQWAAPNRQFSLKDDGILKACAQQDRRLPSERQCVGAVEILGRARAEGYFDIEETPRIRISGGSRVH*	mmseqs_cdd	nonviral_gene	C3	49732	85206	134938	GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote_CDS_0022	shell	direct	high	1532	0.999	GCA_001402715.1_01008
GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote	cenote	CDS	104025	104468	GCA_001402715.1	LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715.1_LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715_1_6	GCA_001402715_1_6@C3	18820	19263	GCA_001402715_1_6_101	GCA_001402715_1_6_101	-	134937	.	cd10016	N-terminal domain of type IIE restriction endonuclease EcoRII and similar proteins. N-terminal domain of type IIE restriction endonuclease EcoRII and similar proteins. Type II restriction endonucleases are components of restriction modification (RM) systems that protect bacteria and archaea against invading foreign DNA. They usually function as homodimers or homotetramers that cleave DNA at defined sites of 4 to 8 bp in length, and they require Mg2+,  not ATP or GTP, for catalysis. EcoRII is specific for the 5'-CCWGG sequence (W stands for A or T). EcoRII consists of 2 domains, the C-terminal catalytic/dimerization domain (EcoRII-C), and the N-terminal effector DNA binding domain (EcoRII-N). To be catalytically active, EcoRII has to form a dimer.	MSTQTFIKTLSANDVGTTGGHMGGILVPRGDGQLLAFLPPLDPGVLNPDAWINCVTPDGEVLRLRFVYYNNRLHAPTGTRNEYRITYLTKFLRDAGAKEGDTFEISKDDDAGTYRIRVISREAAMPEPTDDDGPVRIRLTTGWRRVH*	mmseqs_cdd	nonviral_gene	C3	49732	85206	134938	GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote_CDS_0023	shell	direct	high	443	0.998	GCA_001402715.1_01009
GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote	cenote	CDS	104465	106285	GCA_001402715.1	LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715.1_LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715_1_6	GCA_001402715_1_6@C3	19260	21080	GCA_001402715_1_6_102	GCA_001402715_1_6_102	-	134937	.	PDB:5JXR_A	Chromatin-remodeling-complex-ATPase	MIDLAAQPPSFEAMATSVPDGFSVSERILEPVILIGREDGRIQVRLGGRRVVRGEEKVFVAPSPGHAWVADGNVLRPIPADAPALLSRMLGGEPAENISYPTAIRLLRACSDEIAVQAAPDVLHAGKLAAEELSAEVDIPGLHADLFPYQARGVQWMWETVNRTGGLILADEMGLGKTLQIIALLLLDPPEKTAPALIVCPTSLIANWVREFQKFAPGISIMVHRGAHRAGIYRDLQVASVVITTYETMVNDVSIFSSFEWSWVICDEAQAIKNPHSNRRKAIVTIPRRHSIPMTGTPVENTLLDLWSLADFAIPGMLGDRTVFEAEFPDTVEAGKALGALTDPVILKRRVRDVAADLPERIDIDLPVELDDRLARHYDDVREATLQKYPVAGALVATLQLQLVCAHPWLRVPDAETADWDDVKIVTHDELPLITPKMERVIDLLREAFQNGRKVIVFALFNRIGDLLRQACKDFTGVHWGAINGSTPQQERQAIVDAFTEFDGAACLVLNPKAAGAGLNITAATVVIHFTPVWNPALEAQASARAHRRGQTEPVTIYRLFYKNTVEEVMLERSAWKSDLANETVPVSSRDADDLKRALEISPVRT*	common_virus_hmm	common_virus	C3	49732	85206	134938	GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote_CDS_0024	shell	direct	high	1820	0.999	GCA_001402715.1_01010
GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote	cenote	CDS	106282	107115	GCA_001402715.1	LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715.1_LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715_1_6	GCA_001402715_1_6@C3	21077	21910	GCA_001402715_1_6_103	GCA_001402715_1_6_103	-	134937	.	COG3183	Predicted restriction endonuclease, HNH family [Defense mechanisms]. 	MLSAQQELIRKELENGTGAAIGMRVDPTGTRTRLSIWFSDLDERHGPVAELRPVGLKGYQVTLGFGTFAGDVVRQIRAASDEDVRLAQALLGSIPSSIELDLGGQDVTSWRVETGQTKVIATARRLPQEPEAALTAMCKDAIVPMMAAMAELIGYDVIEAEDEAEGEFEGAILLSTVRRRERNPRNRLLCIRLHGEKCACCGFEPRQAYGAAGGIIEVHHLEALSLLSAPRPYNPATDLVPLCPNCHRAVHTRRPAPYSLEEIRRLLGLGDAREVNG*	mmseqs_cdd	nonviral_gene	C3	49732	85206	134938	GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote_CDS_0025	shell	direct	high	833	0.999	GCA_001402715.1_01011
GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote	cenote	CDS	107117	108745	GCA_001402715.1	LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715.1_LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715_1_6	GCA_001402715_1_6@C3	21912	23540	GCA_001402715_1_6_104	GCA_001402715_1_6_104	-	134937	.	pfam13589	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. This family represents, additionally, the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90.	MSDLINNPNAARLIYGLRDTGYNVKTAAADIIDNSIAAGATEINIDVQMLTGGRKIVSFGDNGHGMDAAGIRDAMRYGANKRPDPKSLGKFGLGLKTASTSVCKRFSVISRKSPDADLAKYTWDLEHVAAQNAWEMLAPPVTADEIDLFEDLCGPTGTLVVWENCDRILSKDYMDETKEKAALKRMTEALSRHVSLVFHRFLDVTDKREKDVVIRIDGTPAKPWNPFYPQRSEQVLAANKQKLIVELPDGSEETAGIKAWILPHRRDMEKDEEAEFARITNRAQGFYVYREGRLIQDGGWMDVFGPPEPHTSLLRIEFDFGHELDDAFSIDVKKSRILFHPDLGDGLEKFLSPIRREAEARYRRISREDANKKNTVDHSSANKNIANTPNTAKPQVAGVDVATQTAEVNNNRGVKIRIKAPIQNDVSPDSIHVEAVTTITNGHLWEPAYRSPGASGHVPGVILNKHHDFYQKIYQRAAANGYAVEGMDLLLYAFAMAEQNNTDPELEPVFEDIREEISSNLRKLLRNMPDPEPSELTEADED*	mmseqs_cdd	nonviral_gene	C3	49732	85206	134938	GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote_CDS_0026	shell	direct	high	1628	0.999	GCA_001402715.1_01012
GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote	cenote	CDS	109243	110319	GCA_001402715.1	LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715.1_LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715_1_6	GCA_001402715_1_6@C3	24038	25114	GCA_001402715_1_6_105	GCA_001402715_1_6_105	-	134937	.	PDB:3ME5_A	Cytosine-specific-methyltransferase	MDQTQTNSFRFIDLFAGIGGLRRGFDAIGGQCVFTSELNKYSQMTYRANFGEDHEIAGDITKVDAADIPEHDLLLAGFPCQPFSLAGVSKKNSLGRAHGFADETQGTLFFDVVRILRHHKPKAFLLENVKNLLSHDRGNTMRVILHALDELGYEVDHKVIDARSWVPQHRERIFIAGFRRDHKTTFSFNDVSIPAGPNPTLSSILHPEDGSEAPDAHFTVGPEAKVSDRYTLTDGLWSYLQRYAAKHRAAGNGFGFGLVGPDSVARTLSARYHKDGSEILVAQPGKNPRRLTPRECARLMGFDRPGSNDPWKIPVSDTQAYRQFGNAVAAPVSVAIAEAMAPWLGNVIAIRGRRNKIA*	common_virus_hmm	common_virus	C3	49732	85206	134938	GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote_CDS_0027	shell	direct	high	1076	0.999	GCA_001402715.1_01013
GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote	cenote	CDS	110564	110950	GCA_001402715.1	LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715.1_LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715_1_6	GCA_001402715_1_6@C3	25359	25745	GCA_001402715_1_6_106	GCA_001402715_1_6_106	-	134937	.	pfam18478	PIN like domain. This is a bacterial domain of unknown function suggested to resemble PIN like domains.	MLDENLPPAMAKALAALFVNEHQIIHLRDRFGSGVTDIAWMTELARDGAWVILSADRRISKNRSEKRVFTESRLIGFFFAPSLQKAPTLKKMERLMAVWDTIEKQVPLVRGGSMFEIPGKGNLLQPIA*	mmseqs_cdd	nonviral_gene	C3	49732	85206	134938	GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote_CDS_0028	shell	direct	high	386	0.997	GCA_001402715.1_01014
GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote	cenote	CDS	110956	111660	GCA_001402715.1	LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715.1_LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715_1_6	GCA_001402715_1_6@C3	25751	26455	GCA_001402715_1_6_107	GCA_001402715_1_6_107	-	134937	.	5AF3_A	VAPBC49	MTAHKSPHEFVGIGLYTIDEAAKLLKSPTRTVRRWLLGHDFKARNGETRHSPPLWATDLPHADGAAELSFRDLVELRFVRAFVEMGLDIRIVRSCLETARECIQSDRPFSSGRFRTDGKRIFLQSLEQDDTPVLIDLKRKQFVFHQIVERTFKDLDLEDDIVTRWRPFHGRASIVVDPKRAFGQPIAAESGVPTIVLAEAVVAEGSVTRVAALYEVDRAAVQDAVTFHKELAAA*	hhsuite_tools	hypothetical_protein	C3	49732	85206	134938	GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote_CDS_0029	shell	direct	high	704	0.999	GCA_001402715.1_01015
GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote	cenote	CDS	111856	112566	GCA_001402715.1	LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715.1_LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715_1_6	GCA_001402715_1_6@C3	26651	27361	GCA_001402715_1_6_108	GCA_001402715_1_6_108	-	134937	.	.	hypothetical protein	MINLPESQKAAISAINADLLRGSIEREIERRGAGALSEYSLWQCGEFIEGKRQIFAKALDTFRQAKSQAKTERTEREARKAGDDILYAVSMMKARVLEEERDALLFVVDDYVGRPLINRDELKVGIGYRWRASAEDEWKFGHITFLHKSTPWPHLGSQTSPRKVSKAQQARENENRLEKEWDDMVLNALCSVRDFFRAGGDGKDIPAEFRAIPSRFGCGLDNHSLKFWGDRYKSQP*	.	hypothetical_protein	C3	49732	85206	134938	GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote_CDS_0030	shell	direct	high	710	0.999	GCA_001402715.1_01016
GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote	cenote	CDS	112684	113934	GCA_001402715.1	LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715.1_LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715_1_6	GCA_001402715_1_6@C3	27479	28729	GCA_001402715_1_6_109	GCA_001402715_1_6_109	-	134937	.	COG3174	Uncharacterized membrane protein, DUF4010 family [Function unknown]. 	MDTLPILVPPALNLVSAIAVGALIGTERERRKGEGPARSPAGLRTFAIASTAGAVAFSLGGAVLLAVVAASVAGLLAVSYGKRPHQDPGLTTEIVLLLTVLLGGLCIPAPQMAAAIAVTVTVLLHLKAWLHTLVTTLISKDELDDALIFAAATLVILPLVPDRPMGPWLALNPHSLGIVIVLVMAIGAAGYLAVRVFGARFGLPLSGALSGFVSSTATIGAMGARALQSPEMRAACVAAAVLSTVATVLQMALVLAAVSLPTLRQLILPLVFAGFTAVAYGVVLTLAAMRHPAPETPGPGSAFSLKTALIFGTVLALVLILAAGLQANFGGSGVLLAATVAGLVDTHASAISVATLVAAGKVAPEAAAVPILAGLSANTATKILVATISGGRSFALRVVPGLVLVILAAWAGSLLM*	mmseqs_cdd	nonviral_gene	C3	49732	85206	134938	GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote_CDS_0031	cloud	direct	high	1250	0.999	GCA_001402715.1_01017
GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote	cenote	CDS	114366	117446	GCA_001402715.1	LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715.1_LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715_1_6	GCA_001402715_1_6@C3	29161	32241	GCA_001402715_1_6_110	GCA_001402715_1_6_110	+	134937	.	PFAM:PF13884.5	tail-fiber-protein	MARNMTTQLSRIAPEGDRARSGLTGVARHLLSVSVIALLFGLSPAAAQFRIDRAGEVTEESSGVIQSTVGYLADTTTGGGDNLGDHIATQGLNMAGFGISGILTPDGSDPGAGVNVQYVEDMFGAYTPPEPDLSDYVTKSGMPQTITSAKTFDGPVLFSDDVQVTKVPASTRDVTNKAYVDDAIDDLVTLTTNQSVSGDKSFTGSVAVRTPTGDMGAANKLYVDNAISAAGGSYVTMGTNQIIGGTPITGAKGFTGAVTFGGEVNVTSTPDDANDAVNKAYVDNLTDGLAGRVTVLEGDVTALTASVTTLQGNVVSLRSDVTTLQGDVSTLDTRVTNLANRTITAGSGITASGTLGGGITVSVDPTVVRTSGNQTLAGVKNFSSLPTVPTAAPTLAGQVASKAYVDAQVAGAVGTTYAAGDGLSLAGTTFAVNGTVVRTTGDQTLAGVKTFSAPIAGSITGNAATATKLAAAKTINGVAFDGSAAITLPTVNTTGAQAVAGVKTFSDIPVIPITAPTVAGQVASKAYVDAQVASAEGTTYTAGSGLSLVGTTFAVDGSVVRTSGDQTLSGVKTFSAPIVGSITGNAATATKLAAAANINGVAFDGSAAIALPTVNTTGAQTVAGVKAFSSPIVGSITGNAATATKLVAPSAINGVAFDGSAAITLPTVNTTGAQTVAGVKTFSSPIVGSITGNAATATKLAVAANINGVAFDGSAAITLPTVNTTGAQTVAGVKTFSSPIVGSITGNAATATKLAAAANINGVAFDGSAAITLPTVNTTGAQTVAGTKTFTGTLTGTGTVNLPPATYIPAMGTTSTAVANKAYADTKVSLTGNQAIAGVKDFAAFPTVPIATDPTADNQVVSKKYADSLAFNITRRLDLGNIRMLIPAVKGDGATSNMYKNYYTSDRSMTINVGNPPSGYEWILKATLSSAAPITFSATRYFKALPGDVITSDGSSLHFNSNPWTTSALAQNGNGLYITDPLNRSVSGHFIEANSEDPLIISGKPSLGDVNGIYYSGSLELFLSPI*	phrogs_hmm	hypothetical_protein	C3	49732	85206	134938	GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote_CDS_0032	shell	direct	high	3080	1.0	GCA_001402715.1_01018
GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote	cenote	CDS	117364	117579	GCA_001402715.1	LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715.1_LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715_1_6	GCA_001402715_1_6@C3	32159	32374	GCA_001402715_1_6_111	GCA_001402715_1_6_111	-	134937	.	.	hypothetical protein	MKLEVGAKTGTDGGEKIFERLAQRNGNPLAHGLSMSSVVDNSQFFRSETEKAPSSQNNKYRLHLRVRVSQK*	.	hypothetical_protein	C3	49732	85206	134938	GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote_CDS_0033	shell	ambiguous	low	84	0.389	GCA_001402715.1_01018
GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote	cenote	CDS	117738	119702	GCA_001402715.1	LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715.1_LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715_1_6	GCA_001402715_1_6@C3	32533	34497	GCA_001402715_1_6_112	GCA_001402715_1_6_112	+	134937	.	COG3593	Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains [Replication, recombination and repair]. 	MKLIKAHATNYRNIIDSNPVEIGRSTCLVGKNEAGKTAFLKALECLRSTNSEFKSYGKTENYPRRYLSEYDSKHEDGDAVVMRTEWELEPADIKAMEATFGEGVLNSKTITIQKAYDQDNATWSVPLDEEKVFDNLVKRFALDQADRGPLVAAKSTKAAMKILEALPTPTERQTELLAAIKKFRDGSANLHAIDTLNARTPKFLYFSHYDRMSGALSINKMNTDKQHGIPLESGDRVFLDFLEYAGTTIDELAALDRFEELNAKCEAAALRITEQIFEYWTQNDDLEITVVLSEGKAADPAPFNSGPVARARVKNKLHGVTVPFSERSAGFIWFFSFLVKFAQIKKSHGNVILLLDEPGLTLHGTAQKDLLRYFAEQIAPKHQLIYSTHSPFLVPADDLSSVRTVEDVVVRDDRGRKQSKGTKVRSDVLTTDPQTNFPIFGAMGFEVTQTLVIGKNTLLVEGPSDILYLQAASAALKAAKRTHLSAHWAICPSGGIDKVLPFVRLFYGNKLNVAVLTDFDRGQKRKLEDLHKSALLENERIILATEIAGKDEADIEDFFDPRLFVDLVNKTYQLGKAHQLTVKKLMDADATTERLVKKAEAYFRVLPPQCPEFSHFDPSVYLLQHPELLSGTDDQVVKTLERFEAAFERISKLI*	mmseqs_cdd	nonviral_gene	C3	49732	85206	134938	GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote_CDS_0034	shell	direct	high	1964	0.999	GCA_001402715.1_01019
GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote	cenote	CDS	119714	120379	GCA_001402715.1	LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715.1_LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715_1_6	GCA_001402715_1_6@C3	34509	35174	GCA_001402715_1_6_113	GCA_001402715_1_6_113	-	134937	.	COG2135	Putative SOS response-associated peptidase YedK [Posttranslational modification, protein turnover, chaperones]. 	MCGRFVDPNLRNTEVDMSQIKLDPFGARFNVKPTETVVILAKSPLIAMEARWGLIPSWFGGDSPKAWKAATFNARIEDAREKPAFRQVWRHGRCLVPVGGFYEWSGPRGARQPHFFHPAGNEANLYLAGLASRWRDLLTCTILTREATGAMAGLHHRMPVILNADERDAWLGGSDDVAPLGTGVKLACHPVAPFGLQDDGPELIEAINLQGGTQSFVRCPS*	mmseqs_cdd	nonviral_gene	C3	49732	85206	134938	GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote_CDS_0035	persistent	direct	high	665	0.998	GCA_001402715.1_01020
GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote	cenote	CDS	121173	121400	GCA_001402715.1	LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715.1_LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715_1_6	GCA_001402715_1_6@C3	35968	36195	GCA_001402715_1_6_114	GCA_001402715_1_6_114	+	134937	.	.	hypothetical protein	MNGEAKNEEKDGKGIKCLFINDFFRFERSRAMTLPDPRPHPGDRNDLHLSPENENAGMLAHPDVDVMWKAEAHQH*	.	hypothetical_protein	C3	49732	85206	134938	GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote_CDS_0036	cloud	direct	high	227	0.996	GCA_001402715.1_01021
GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote	cenote	CDS	121615	123360	GCA_001402715.1	LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715.1_LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715_1_6	GCA_001402715_1_6@C3	36410	38155	GCA_001402715_1_6_115	GCA_001402715_1_6_115	+	134937	.	PFAM:PF03050.13	Transposase-IS66-family	MADKDQTDKPLKDEILPPEDTAPLIAQETVQTEETVEGELSPMGEIITEITDLLAALPGDCAEIKHGIEECLIGVHLEFEDVVSRESIARRQIATLKRSLRQEKEQAKLLRHKIFVGGSDNNYQDIEDGTLDLPDDDIDEEEETPKARKGKQKRKMPKDIKTIEIKHYPEQTHCPCGGELKEIGHWISTLLRVIPEHYVWEKHIYFRCACNRSAACKEHKPVSAHAEGFIGRRRTITPRTVVEAVCQKFYEHSTHYRQRRRLDNAGFNVARQTLSRNATHIAGFLEPVCDEIWRHVTSGHAAHMDETPLRTQAKGGCETTWLWGLCRDERGWNKEAEPAVYFEHDASRGGHVAERMLEGALIDTLQIDGWKAYNRIRRVPGQNDGVEIARCMAHARRKFTDSQKAAPSTLAKRVIKGLKAVYEVEERVYGCPPEERQALRLAEALPVLEKIRADLLRVQPDLAKGSLKTAVNYFLSGWEDLTRYVYDGRLAIDNNPVERCMRGIALSKKNSLFAGNLMAAKNWAIFYSLIETARLNGVDPFRYLSWVIDQIEKGRELTDYSQLMPWHYKAANEAPSQGKAA*	common_virus_hmm	common_virus	C3	49732	85206	134938	GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote_CDS_0037	cloud	direct	high	1745	0.999	GCA_001402715.1_01022
GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote	cenote	CDS	124029	124130	GCA_001402715.1	LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715.1_LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715_1_6	GCA_001402715_1_6@C3	38824	38925	GCA_001402715_1_6_116	GCA_001402715_1_6_116	-	134937	.	.	hypothetical protein	MFTRRPPALPERPFPLVLRALALIVTGPKAARP*	.	hypothetical_protein	C3	49732	85206	134938	GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote_CDS_0038	shell	direct	high	101	0.99	GCA_001402715.1_01023
GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote	cenote	CDS	124292	125560	GCA_001402715.1	LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715.1_LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715_1_6	GCA_001402715_1_6@C3	39087	40355	GCA_001402715_1_6_117	GCA_001402715_1_6_117	+	134937	.	.	hypothetical protein	MNASTEKETRGAWIVHHARKITMDVSAPAEYSALDEAGKAAELLMRLGASAESNLTTDEVSAIARAANLNARTELPHYLNLLKQRRLIDTSNSEVQVLGVNARSVLRHASDIFEDANPSNSEIAAIELGEVASRAPILRSDAAQYFGDTYKMKSADASEFIRRAGEIGFVDQEGDDPSNVLLFNGNLFKRDSVGKAAKVLSSLGSAEQAKLVELNGLLSSSGCMLASRCENILGNQLFEKLKAAGVLEVNTVANEQGDHAFVTLPGAFHKFVNPLIDDSFDMAKALVSALAYGLHLRPSSQGRIVSVDWILGALIAGRTIGPATAIANDYRILEQNRVVQLIPAHSGMYRMKLLKREVGELALQVLKRGDANAETIQTPPSAPITGYVGPERTREQARKHQSKPSRQQTHDILSALRGGRGL*	.	hypothetical_protein	C3	49732	85206	134938	GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote_CDS_0039	shell	direct	high	1268	0.999	GCA_001402715.1_01024
GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote	cenote	CDS	125560	126708	GCA_001402715.1	LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715.1_LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715_1_6	GCA_001402715_1_6@C3	40355	41503	GCA_001402715_1_6_118	GCA_001402715_1_6_118	+	134937	.	.	hypothetical protein	MGERKDQKGFRLEELLRAYFIRAGVYAVRGVPLKFDGDDLTDIDIWLYERPTGSSRRRQIVDAKSKTKPKAIERLLWTKGLFELLDVDGAYIATTDTRPLLKDMSRRLGISVLDGSDIKRMAESDKVVFPDRLAEEEIDDAIRRRDTDRRNKYLQTGYSDLKGALIDNFGGGTANRALEHVHRFSNELVASHPNSPSAEICLRLTYIAASISAIAIDAALSKVSFKSTDERRHAIINIIRYGDEDEARGLEKVRIATALIERYAPNGGALSQTVAQAVRKDYAKIPAEIIADHVVGNIRADGLFRIARSLDLRAFNRQLLGFDDLSQEEKAFIGVLVDFVDCDRAAVAKSWTPKPSVKPDATKSGIEVVDELGPLFDNRKGE*	.	hypothetical_protein	C3	49732	85206	134938	GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote_CDS_0040	shell	direct	high	1148	0.999	GCA_001402715.1_01025
GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote	cenote	CDS	126728	127243	GCA_001402715.1	LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715.1_LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715_1_6	GCA_001402715_1_6@C3	41523	42038	GCA_001402715_1_6_119	GCA_001402715_1_6_119	-	134937	.	.	hypothetical protein	MGRDGREPANMPPDWLDELAKLGAAERPLSSDDMTGGVPPERFRRHLALSAWKYIADYGSAKEPLPDWVIGYLKAVAKHIASNLGPKGALSREDASSALGIDGKAWPEHSPIVVYLAMQEWIDGEAWPDVTGPAAAAKLYIQERMAGDRDALASTVIRLYKEGKRLWLAEG*	.	hypothetical_protein	C3	49732	85206	134938	GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote_CDS_0041	shell	direct	high	515	0.998	GCA_001402715.1_01026
GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote	cenote	CDS	127329	127682	GCA_001402715.1	LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715.1_LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715_1_6	GCA_001402715_1_6@C3	42124	42477	GCA_001402715_1_6_120	GCA_001402715_1_6_120	+	134937	.	.	hypothetical protein	MTTELVASILTTVPDDCGGMTDSIVDPVKAEMEAYDRDVKTAERVLFDIRAGGEVEIMYDPMTGWEMSGEDVSVYMPLETAERAVNMILRRLTRHYRKLSALRGNPDLFDMMQLEPK*	.	hypothetical_protein	C3	49732	85206	134938	GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote_CDS_0042	shell	direct	high	353	0.997	GCA_001402715.1_01027
GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote	cenote	CDS	127920	129125	GCA_001402715.1	LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715.1_LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715_1_6	GCA_001402715_1_6@C3	42715	43920	GCA_001402715_1_6_121	GCA_001402715_1_6_121	-	134937	.	PDB:1Z19_B	Integrase	MRGKIREGTVTLEHIQTVHAGGKIYRYLRIPGQPRVKLPDLPLDHPEFLAAYAAARAAAPKQVRATTGTIAALCEAYLRSDSYLAHSANYRATLRRHIEAIREQAEDALASHLRADDIADDLAPLKPNVAGARLKAWRAVCKFGVEKRLLKSDPSHAVIKPKAPKTDGHPPWSAAEIERFRARWSIGTVPRACFELLFWTGARISDAVRIGPGMVGRDGVLAFRQQKTGDEAFVPWACPLPAYAEGMIEDRDTMHAAIACLGGHMTFLATHGGRTRSHKALGTVIADAARSAQITGRSAHGLRKSRAQQLAEAGATTHQIAAWTGHQSLSEVQHYTESANRRAAVTGTEQDRNSVKRSDLPVKTRNTPCEPKWFLRRGDPGRTRTPDPLLRRSLVYVPNRL*	common_virus_hmm	common_virus	C3	49732	85206	134938	GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote_CDS_0043	shell	direct	high	1205	0.999	GCA_001402715.1_01029
GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote	cenote	CDS	129095	129337	GCA_001402715.1	LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715.1_LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715_1_6	GCA_001402715_1_6@C3	43890	44132	GCA_001402715_1_6_122	GCA_001402715_1_6_122	-	134937	.	6AMA_Y	DNA binding domain-containing protein, excisionase	MGKHEPHFVPRLLPAPEAALYLGVSQTTLRGLDIPRRILGAKRLYDRYDLDAFASALPIEGDAIESEVVNTCAGKFGRAR*	hhsuite_tools	hypothetical_protein	C3	49732	85206	134938	GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote_CDS_0044	shell	direct	high	242	0.996	GCA_001402715.1_01030
GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote	cenote	CDS	129452	129703	GCA_001402715.1	LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715.1_LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715_1_6	GCA_001402715_1_6@C3	44247	44498	GCA_001402715_1_6_123	GCA_001402715_1_6_123	-	134937	.	pfam07505	Protein of unknown function (DUF5131). This is a family of bacterial and phage proteins of unknown function. There are three highly conserved cysteine residues in the disposition, Cx6Cxxc, amongst many highly conserved residues.	MHPDWVRSLRDQCVSAGVSFHFKQWGEWAPAIGIAVTHRWIGNNYLHKFNGGPVVGPGMARIGKRAAGRLLDGRTCDEMPGGA*	mmseqs_cdd	common_virus	C3	49732	85206	134938	GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote_CDS_0045	.	unmatched_CDS	none	0	0	.
GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote	cenote	CDS	130010	131170	GCA_001402715.1	LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715.1_LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715_1_6	GCA_001402715_1_6@C3	44805	45965	GCA_001402715_1_6_124	GCA_001402715_1_6_124	+	134937	.	PFAM:PF03354.14	Large-Terminase	MSATEALPRFACPDWWERMQQGLPPMASVPVNEERAQKVVTFFNRLRLPDVAGAPSLADACGDWFRDILVAFLASEDPQTLQPIVWELLCEVPKKNSKTTYAAALGLTALYMEDAPNRKMLLVGPSQAIACRCFDQARGMIDVDETLKKIFHVPDSDTVITRRKTGTSLAVKTFGTAIVTGEIPVLTIIDELHELGKVPRAAAVMQQIRGGGITKQRGKLLMITTQSDESPAGVWRTELDKARKIRDGRAGPSPIMLPVLYEFPLELQHKQEFWRDKRNWGLVLPNLGLSIDPQALADDYDNNGKATKHAEQIWASQHLNIEIGVGLSAGWLGAQYWEGCVETDLTLDELIERSEVAVQGIDGGGLDDLFAEAVIGRCRETGHWLH*	hallmark_hmm	common_virus	C3	49732	85206	134938	GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote_CDS_0046	shell	direct	high	1160	0.999	GCA_001402715.1_01031
GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote	cenote	CDS	131195	131707	GCA_001402715.1	LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715.1_LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715_1_6	GCA_001402715_1_6@C3	45990	46502	GCA_001402715_1_6_125	GCA_001402715_1_6_125	+	134937	.	PFAM:PF03354.14	Large-Terminase	MFKERPEIAPRLLNFVEDGDLIELGDDDTSGDVRRVAETAARLSAAGLLPQQGAIGVDTTNSAAIQFQMFGAGITYEQLVIVGQDWRLSPAIWGLERMLKQGTFRHCGQPLMAWAAGNAKPEIKGSAVRITKEIAGKAKIDPLMATFNAIMLMLRDPVAAGPQEFEYTGM*	hallmark_hmm	common_virus	C3	49732	85206	134938	GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote_CDS_0047	shell	direct	high	512	0.998	GCA_001402715.1_01032
GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote	cenote	CDS	131710	132993	GCA_001402715.1	LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715.1_LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715_1_6	GCA_001402715_1_6@C3	46505	47788	GCA_001402715_1_6_126	GCA_001402715_1_6_126	+	134937	.	PDB:3KDR_A	Portal-Protein	MGLMRYFRTGAAAPAPVAARVEPPLVASAPAVQSESQWRGFSVGSGVSKAGVRVDERTALTIPATLQALRIISGVFAMAPLHMYGRTPEGRTRLDDHPAEILLAERPNAHQSPFALFELIMSDLLLAGNFYAYVSLNARGEPVALTRLRPGSVVVAEYFDRAEGQILFYDATLPDGSRERFAARNIWHIAGLSRDGLIGLNPVQYAREALGGALATSEHAHRFWSRGGKPSTVLTTEQKVSPEDKTRIRADWERLHAGLEGSATAVLDQDLKAAFLSHNFKDSQFLETRQFQVVDLARIWGVPPHLIFELSKATFSNIEQQSLEFVTYHLGPHFARVAGAATRQFGGNGTYFEHLTDALVRGDLKSRMEAYWLQRQMGMVNANDLLRRENQNNLPGEAGTEYWRPANMALAGQPVTPAQNQGASDAQ*	hallmark_hmm	common_virus	C3	49732	85206	134938	GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote_CDS_0048	shell	direct	high	1283	0.999	GCA_001402715.1_01033
GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote	cenote	CDS	132983	133594	GCA_001402715.1	LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715.1_LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715_1_6	GCA_001402715_1_6@C3	47778	48389	GCA_001402715_1_6_127	GCA_001402715_1_6_127	+	134937	.	cd07022	Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.	MRNEAAALIAAIRAQPWAIMPEYLEAIEAIAVRALAADVLQLLARDGHAERMPANLEAVAAVGTRLDGSRGSTIRNGNAVVPMIGTIFPRASMINASTGGTSLDALMHDVRVAEASADVERIVMVIDSPGGVVSDVGAAADMLRAITKPITAHVAGMGASLAYWLGSQAAELVLDRAASVGSIGVVATTTRQEGADARLGSRA*	mmseqs_cdd	common_virus	C3	49732	85206	134938	GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote_CDS_0049	shell	direct	high	611	0.998	GCA_001402715.1_01034
GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote	cenote	CDS	133431	134699	GCA_001402715.1	LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715.1_LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715_1_6	GCA_001402715_1_6@C3	48226	49494	GCA_001402715_1_6_128	GCA_001402715_1_6_128	-	134937	.	PDB:1Z19_B	Integrase	MPPIRSITPKWSAXEVITKREFKRKLGDSQKEALAAYPQYHAQVERVIDAAKKRMAGAVAASGPSASEREAYAEALRRRADLVARGATEEVLELAADSLADSFPQEGYEPVGAPPVDRHTVNLLRLGPERYRPPEPTLGDALRLYLKEHLKADSPETDSRVTGLATRVVEAAIAAIGRDPLLTAITREDARAVRDHMLDRVKATGRGAGGKVSAATVSRELSILSAVINFAKVEFGMPDTMPNPFSRLPVARVAKGQGQKASEKRDPLPPTVLTKTRARVLANAAPELALIWRMDLPHAARSRRCCRNSGDAAVRVPSSRRGGTALMAHWPYNTSKWARLREAKLAETPLCEICARRGEIEDAVAVDHFKPVNQGGHPRLLAASLWQQPRSSQRRRHGQEQALPPAIQANRPAMPPCPRHER*	common_virus_hmm	common_virus	C3	49732	85206	134938	GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote_CDS_0050	shell	direct	high	1268	0.999	GCA_001402715.1_01035
GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote	cenote	tRNA	28263	28334	GCA_001402715.1	LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715.1_LLVU01000045.1	GCA_001402715.1|LLVU01000045.1	GCA_001402715_1_33	GCA_001402715_1_33@C0	28264	28335	tRNA-Thr	tRNA-Thr	-	200434	.	tRNAscan-SE score: 76.7	Thr	NA	tRNAscan-SE	.	C0	28722	0	28722	GCA_001402715.1|LLVU01000045.1@region_1_28722@tool_cenote_tRNA_0001	.	.	.	.	.	.
GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote	cenote	tRNA	127793	127869	GCA_001402715.1	LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715.1_LLVU01000006.1	GCA_001402715.1|LLVU01000006.1	GCA_001402715_1_6	GCA_001402715_1_6@C3	42588	42664	tRNA-Arg	tRNA-Arg	+	134937	.	tRNAscan-SE score: 72.1	Arg	NA	tRNAscan-SE	.	C3	49732	85206	134938	GCA_001402715.1|LLVU01000006.1@region_85207_134938@tool_cenote_tRNA_0001	.	.	.	.	.	.
GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote	cenote	tRNA	33777	33852	GCA_001402715.1	LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715.1_LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715_1_11	GCA_001402715_1_11@C1	1254	1329	tRNA-Thr	tRNA-Thr	+	112450	.	tRNAscan-SE score: 86.6	Thr	NA	tRNAscan-SE	.	C1	39559	32524	72083	GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote_tRNA_0001	.	.	.	.	.	.
GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote	cenote	tRNA	71593	71664	GCA_001402715.1	LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715.1_LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715_1_11	GCA_001402715_1_11@C1	39070	39141	tRNA-Val	tRNA-Val	-	112450	.	tRNAscan-SE score: 71.5	Val	NA	tRNAscan-SE	.	C1	39559	32524	72083	GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote_tRNA_0003	.	.	.	.	.	.
GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote	cenote	tRNA	35748	35833	GCA_001402715.1	LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715.1_LLVU01000011.1	GCA_001402715.1|LLVU01000011.1	GCA_001402715_1_11	GCA_001402715_1_11@C1	3225	3310	tRNA-Val	tRNA-Val	-	112450	.	tRNAscan-SE score: 30.4	Val	NA	tRNAscan-SE	.	C1	39559	32524	72083	GCA_001402715.1|LLVU01000011.1@region_32525_72083@tool_cenote_tRNA_0002	.	.	.	.	.	.