core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote	cenote	CDS	155	376	GCA_001431425.1	LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425.1_LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425_1_29	GCA_001431425_1_29@C0	156	377	GCA_001431425_1_29_1	GCA_001431425_1_29_1	-	26622	.	PFAM:PF11112.7	excisionase	MAANDYSTFWLLFGKYGATMTIEDVRDTYFPSATLKTMANKHSARLLPPRTGDVYDVRDVAEWWDTQRKAAAS*	phrogs_hmm	hypothetical_protein	C0	26623	0	26623	GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote_CDS_0001	shell	direct	high	221	0.995	GCA_001431425.1_02522
GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote	cenote	CDS	366	1754	GCA_001431425.1	LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425.1_LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425_1_29	GCA_001431425_1_29@C0	367	1755	GCA_001431425_1_29_2	GCA_001431425_1_29_2	-	26622	.	cd01646	RT_Bac_retron_I: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons. The polymerase reaction of this enzyme leads to the production of a unique RNA-DNA complex called msDNA (multicopy single-stranded (ss)DNA) in which a small ssDNA branches out from a small ssRNA molecule via a 2'-5'phosphodiester linkage. Bacterial retron RTs produce cDNA corresponding to only a small portion of the retron genome.	MTSPCYPISACADGLQDRGDNAWIVNFDNGNSNINNRDNNNRVRAVRGPAREFQGAGEAQQVTLRDLHAAWKAARRQKVPSANQLDFDTRWGDRLLDLQEQINAGTWSPRPTTCFVATRPKAREIHAPDFGDRVVHHWLIPQLEAIYERTFIADSFANRRGKGSHAAVRRLQAFVRQVHSGQGGGYYLQLDIANFFNRIHRPTLYRMLKARMERRRLPWIARKAAHALLRNSPLEIGVRHVATATDRAMVPPHKRLENAPAGCGIPIGNLSSQFFANVYLDRLDQFIKHTLGARRYLRYVDDFVLVHHSREQLLEWKTRIVQFLADELRLSLKEDADPQPLAAGIDFLGYVVRPTHSTVRRRVVSHARAALAAWESAHSDAGRITGTPDDFRAVRSIWASYEGHFRHANSHRLRAGFLRRFPWLPAATRSRRHPLRAEGRRITIHCHNPGKSQAQQGGPHGR*	mmseqs_cdd	nonviral_gene	C0	26623	0	26623	GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote_CDS_0002	shell	direct	high	1388	0.999	GCA_001431425.1_02523
GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote	cenote	CDS	1751	2197	GCA_001431425.1	LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425.1_LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425_1_29	GCA_001431425_1_29@C0	1752	2198	GCA_001431425_1_29_3	GCA_001431425_1_29_3	-	26622	.	cd16376	diversity-generating retroelement protein bAvd and similar proteins. The bacterial accessory variability determinant (bAvd) protein, together with a reverse transcriptase, is involved in retrohoming processes as part of a diversity-generating retroelement (DGR), a type of system that is involved in generating sequence variation in bacterial proteins by inserting coding information from a template region into a variable region of a protein coding gene. bAvd forms homopentamers and interacts with the reverse transcriptase as well as with DNA and/or RNA.	MTFQLPPIAKTAERLLLEIERAVAGFPRRHRYTAGAELRQQAMGITVLVHRAWRDRKQQLALVERVVWEVDALKIRMQLCSQLRAFASLAQFEMLARIARELGKQAGGWHRQQSSPHPTGQNAQGRQARAQRAEKLSTRGTSNWEVYR*	mmseqs_cdd	nonviral_gene	C0	26623	0	26623	GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote_CDS_0003	shell	direct	high	446	0.998	GCA_001431425.1_02524
GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote	cenote	CDS	2229	2657	GCA_001431425.1	LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425.1_LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425_1_29	GCA_001431425_1_29@C0	2230	2658	GCA_001431425_1_29_4	GCA_001431425_1_29_4	-	26622	.	pfam07603	Protein of unknown function (DUF1566). These proteins of unknown function are found in Leptospira interrogans and in several gamma proteobacteria.	MTEQSRFTQHADGVVYEPARDLHWTQDDVAGGRMTHADALAAVAKLNAEAFGGFTDWRLPEVEELFLLADRSRCSPAIDITAFPTCQSDWYWTATDDASEEKDEDTGHSDYAWIVYFGYGLSSFSLRGNLNRVRAVRGPARQ*	mmseqs_cdd	nonviral_gene	C0	26623	0	26623	GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote_CDS_0004	shell	direct	high	428	0.998	GCA_001431425.1_02525
GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote	cenote	CDS	2693	2893	GCA_001431425.1	LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425.1_LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425_1_29	GCA_001431425_1_29@C0	2694	2894	GCA_001431425_1_29_5	GCA_001431425_1_29_5	-	26622	.	.	hypothetical protein	MLGAPEQLDIFGYRTRRLAEINRVAADAARVAYNFPPSVRDERVRFYLAEAERYEALVAKCTPSMA*	.	hypothetical_protein	C0	26623	0	26623	GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote_CDS_0005	shell	direct	high	200	0.995	GCA_001431425.1_02526
GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote	cenote	CDS	2877	3125	GCA_001431425.1	LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425.1_LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425_1_29	GCA_001431425_1_29@C0	2878	3126	GCA_001431425_1_29_6	GCA_001431425_1_29_6	-	26622	.	.	hypothetical protein	MTRSMTHLQRAESFRISPAMVKALRRLAHGQKGLDEDTYRAHVRAVGCASTLDLTRSQHTALLQRLVALPDSPKGRGNARRA*	.	hypothetical_protein	C0	26623	0	26623	GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote_CDS_0006	shell	direct	high	248	0.996	GCA_001431425.1_02527
GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote	cenote	CDS	3312	3542	GCA_001431425.1	LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425.1_LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425_1_29	GCA_001431425_1_29@C0	3313	3543	GCA_001431425_1_29_7	GCA_001431425_1_29_7	-	26622	.	.	hypothetical protein	MAGDMAWIRKTYGVPAKRGARVAYLGNGTTAKGTIRSASNGRLNIQLDGDRFTIPFHPTWKLRYLDADSPQEASEA*	.	hypothetical_protein	C0	26623	0	26623	GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote_CDS_0007	shell	direct	high	230	0.996	GCA_001431425.1_02528
GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote	cenote	CDS	3542	3955	GCA_001431425.1	LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425.1_LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425_1_29	GCA_001431425_1_29@C0	3543	3956	GCA_001431425_1_29_8	GCA_001431425_1_29_8	-	26622	.	.	hypothetical protein	MADPMQQARELLAAEIGAPVTAGSFAGSLPAGVHADVALRAITAALRSAPEGFVMVPVEPSIGVLASMAIRRDHGLGCPGYYDAPVFGAENVGHQCRMEVAIGEARQQYAEVVGKGFYSLDREGHYAGLAARPQGVR*	.	hypothetical_protein	C0	26623	0	26623	GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote_CDS_0008	shell	direct	high	413	0.998	GCA_001431425.1_02529
GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote	cenote	CDS	3955	4233	GCA_001431425.1	LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425.1_LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425_1_29	GCA_001431425_1_29@C0	3956	4234	GCA_001431425_1_29_9	GCA_001431425_1_29_9	-	26622	.	.	hypothetical protein	MKVFCVHDVEWWIGNSAESVLEAVIEEYGYTEDDIAIDDVEEVMDATLDELKFTDADENERPTGVVRSFREQLAIELAEGGDFPRLLASEEW*	.	hypothetical_protein	C0	26623	0	26623	GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote_CDS_0009	shell	direct	high	278	0.996	GCA_001431425.1_02530
GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote	cenote	CDS	4427	4753	GCA_001431425.1	LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425.1_LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425_1_29	GCA_001431425_1_29@C0	4428	4754	GCA_001431425_1_29_10	GCA_001431425_1_29_10	-	26622	.	.	hypothetical protein	MSRKECTTPAPVVVGDWIADAPGMIHPEIAKVRAVYWDDIAGEWVADLQMYSRTGGRRRFEPAVPMKAWQRIEKPDFPVSTDMSGFRDWGPYLNYLPAAQASDAEVRP*	.	hypothetical_protein	C0	26623	0	26623	GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote_CDS_0010	shell	direct	high	326	0.997	GCA_001431425.1_02531
GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote	cenote	CDS	4750	5571	GCA_001431425.1	LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425.1_LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425_1_29	GCA_001431425_1_29@C0	4751	5572	GCA_001431425_1_29_11	GCA_001431425_1_29_11	-	26622	.	.	hypothetical protein	MTTEHNEQQKYVRGELGAQPAAAQEAGQRLSELLCSLAESGQVTLDPFDSNSIDAIVAAVLGAAPVTAAPIGSDACPVTGLRFYDNMEHPERGMIAMYGGPFDVYSIPELGDDDELRRERYDLDRGDWVEGGEPLGYFYREQQLEEGSTPAAPGIDLEQLRRNLCVIGVVGQIDGYDVIRRNSMLEIVDRARLIDASPKGGSEAEVMQLRYQLNSLRQLLSGFDIAVQKNPLQPPCTYLEEVRLSHEFQPGCGHEVAAALRNALKPESEGAKQ*	.	hypothetical_protein	C0	26623	0	26623	GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote_CDS_0011	shell	direct	high	821	0.999	GCA_001431425.1_02532
GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote	cenote	CDS	5568	5861	GCA_001431425.1	LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425.1_LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425_1_29	GCA_001431425_1_29@C0	5569	5862	GCA_001431425_1_29_12	GCA_001431425_1_29_12	-	26622	.	pfam14090	Helix-turn-helix domain. This helix-turn-helix domain is often found in phage proteins and is likely to be DNA-binding.	MSEDAQCALLLEAISSRPMTALEILAELGIARASARIYDLRRHGYVIHSTEIVVRNRQGKPCRVARYSAPTAQKLLIPHMPGRSRFTHRPGKKDASP*	mmseqs_cdd	nonviral_gene	C0	26623	0	26623	GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote_CDS_0012	shell	direct	high	293	0.997	GCA_001431425.1_02533
GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote	cenote	CDS	5870	6259	GCA_001431425.1	LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425.1_LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425_1_29	GCA_001431425_1_29@C0	5871	6260	GCA_001431425_1_29_13	GCA_001431425_1_29_13	-	26622	.	.	hypothetical protein	MQRMISHDSPLPTCSAGHPARLMPFASILGETKAKGLPVMVLSMVDGDLYLADRAEESREVISDAVLKAGPNFRAALDPRRLISALSSVDSNVIALHAPESGKKTASWLLYEDEGDHAANAHLIVQINL*	.	hypothetical_protein	C0	26623	0	26623	GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote_CDS_0013	shell	direct	high	389	0.997	GCA_001431425.1_02534
GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote	cenote	CDS	6279	6803	GCA_001431425.1	LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425.1_LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425_1_29	GCA_001431425_1_29@C0	6280	6804	GCA_001431425_1_29_14	GCA_001431425_1_29_14	-	26622	.	.	hypothetical protein	MGAQQSNAIWALRRALLTSLLVALGGCAAPVHPEPVSSSVLAVNGEVAIPADLIVTSPRICAALAVYDMADHDDWGLRATIAITALNAFRAADRAPNCAAGVGAALTQEFSARRWQAALDAVDAVTSGSYSVSPDACTRATAVAPLSSVVNAETPTAARVHCVIYDLAFVSAAP*	.	hypothetical_protein	C0	26623	0	26623	GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote_CDS_0014	shell	direct	high	524	0.998	GCA_001431425.1_02535
GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote	cenote	CDS	6807	7244	GCA_001431425.1	LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425.1_LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425_1_29	GCA_001431425_1_29@C0	6808	7245	GCA_001431425_1_29_15	GCA_001431425_1_29_15	-	26622	.	pfam07603	Protein of unknown function (DUF1566). These proteins of unknown function are found in Leptospira interrogans and in several gamma proteobacteria.	MSGSTAPRFQKIVPTPPPVHETVLDTSTGLEWQAAPFAESMKHAAAVKACAELRLGGHDDWRLPTRAELLTLVDDTRCSPAIDTDAFPNTPSTWFWTSTVYAADDSYAWFVSFGYGYSYFDYRDGYLRVRAVRGPARQFSASLER*	mmseqs_cdd	nonviral_gene	C0	26623	0	26623	GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote_CDS_0015	shell	direct	high	437	0.998	GCA_001431425.1_02536
GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote	cenote	CDS	7435	8061	GCA_001431425.1	LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425.1_LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425_1_29	GCA_001431425_1_29@C0	7436	8062	GCA_001431425_1_29_16	GCA_001431425_1_29_16	+	26622	.	PF15947.5	Domain of unknown function (DUF4755)	MVQGQLAAKDSPVIAFILILVALVVIGAVTSIVVAQANKRGIGGYISGIPELSGDYIRVGEDGRTALVIDESRLKIALVYRSGEGIFHRLLSYGDVISAQIHEDGFVVTSTSRASQLAGAAVGGVLLGGVGAVVGAVTGKQTQVAKVKRVELRLVVSDVARPIHDVVFQDVESKRDGLIYQHSIQQAREWLGRFEAVIHRSKATPRED*	hhsuite_tools	hypothetical_protein	C0	26623	0	26623	GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote_CDS_0016	.	unmatched_CDS	none	0	0	.
GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote	cenote	CDS	8127	8744	GCA_001431425.1	LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425.1_LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425_1_29	GCA_001431425_1_29@C0	8128	8745	GCA_001431425_1_29_17	GCA_001431425_1_29_17	-	26622	.	PDB:2FJR_A	Repressor-protein-CI	MTSIGYSTISELERGGMQTTTKLRLIADALGVSLSWLETGKGPKSSGIQGPRTPYVLEPETPLRYVRVEQLDAIGGMGSAVVNDDHPEIIRSVEYGEAYIRALIGFVPPPGRLKLVAGAGDSMRPVIEPGEATLMDSGVTTFQGDGIYWIGLGDRDDGHQIKMLQQRGDGLWVVSANPLYPPFPFPEHGRIGGRLYIRHKIDRFN*	common_virus_hmm	common_virus	C0	26623	0	26623	GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote_CDS_0017	shell	direct	high	617	0.998	GCA_001431425.1_02537
GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote	cenote	CDS	8890	9360	GCA_001431425.1	LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425.1_LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425_1_29	GCA_001431425_1_29@C0	8891	9361	GCA_001431425_1_29_18	GCA_001431425_1_29_18	+	26622	.	PFAM:PF04936.11	transcriptional-regulator	MDWKLHIAQLISAGATPGQIAERIGVTANAIREIVAGRTKSPRADAAFKLARLTPADFVDRQPVLNSVTGHAAAKVLIDTRMSKRALRARLGLSTDKQLAKVLQLPVEQVEGWEEESALPAVPEVLRLLGAQAPAANAPQEPEDPDSARIVPVEVA*	phrogs_hmm	hypothetical_protein	C0	26623	0	26623	GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote_CDS_0018	shell	direct	high	470	0.998	GCA_001431425.1_02538
GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote	cenote	CDS	9364	9579	GCA_001431425.1	LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425.1_LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425_1_29	GCA_001431425_1_29@C0	9365	9580	GCA_001431425_1_29_19	GCA_001431425_1_29_19	+	26622	.	PFAM:PF16777.4	transcriptional-regulator	MSAVPKRTPAVPAAWTLRDEFAMRALAALVVKGDWGCMAPDGTRKTYSNMAEYSVAAYEFADHMLRAREVA*	phrogs_hmm	hypothetical_protein	C0	26623	0	26623	GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote_CDS_0019	shell	direct	high	215	0.995	GCA_001431425.1_02539
GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote	cenote	CDS	9672	9974	GCA_001431425.1	LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425.1_LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425_1_29	GCA_001431425_1_29@C0	9673	9975	GCA_001431425_1_29_20	GCA_001431425_1_29_20	-	26622	.	NF033230	hypothetical protein	MAKKELTSARSEMNEIRLRLRKAEAHLNYSLDVFGDSLGKKHGWKNTLDGLEAVRYYLMQKHHWTPSQLQAMSLEDLRFALTEEMHGWRLPKDAIGPKGS*	mmseqs_cdd	nonviral_gene	C0	26623	0	26623	GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote_CDS_0020	shell	direct	high	302	0.997	GCA_001431425.1_02540
GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote	cenote	CDS	10061	10696	GCA_001431425.1	LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425.1_LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425_1_29	GCA_001431425_1_29@C0	10062	10697	GCA_001431425_1_29_21	GCA_001431425_1_29_21	+	26622	.	PFAM:PF06892.10	CII-like-transcriptional-activator	MSVISSMAGSLPGASADGMKLGRQFLPPRAQVIYAYTHRLLNETATNANSFAMQVAENYFALVAPHMRDKKAVPFRLGEGDDLADALKANGQALRRYMDGTVKTLPADLEDAWVLSLPEPYRSDCERDLAARRGMLPVRLAHIAPDADTAGIGSLMTDFGQLVAALTPAIADGVIDDRDRPHARKIVDACQDVVIAAVTVERRFVTLLGDR*	phrogs_hmm	hypothetical_protein	C0	26623	0	26623	GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote_CDS_0021	shell	direct	high	635	0.998	GCA_001431425.1_02541
GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote	cenote	CDS	10696	11004	GCA_001431425.1	LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425.1_LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425_1_29	GCA_001431425_1_29@C0	10697	11005	GCA_001431425_1_29_22	GCA_001431425_1_29_22	+	26622	.	.	hypothetical protein	MAQDAKPKPRAFGLARYSDEQLRAELDRRARASGKPAAQWIGKRSEWLRKVAADLQKQLDELQEDRVPAGQMLAVKQARVRSLKDRINKNLRFADLAEAEGN*	.	hypothetical_protein	C0	26623	0	26623	GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote_CDS_0022	shell	direct	high	308	0.997	GCA_001431425.1_02542
GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote	cenote	CDS	11127	11366	GCA_001431425.1	LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425.1_LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425_1_29	GCA_001431425_1_29@C0	11128	11367	GCA_001431425_1_29_23	GCA_001431425_1_29_23	+	26622	.	.	hypothetical protein	MNSDKESNPGLRFDWAGDRDAVVFPTVRGVAVYVNTNDDVVIRQEAHALEREDTLVFVPRVHVPALIAALQAAMEDGEG*	.	hypothetical_protein	C0	26623	0	26623	GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote_CDS_0023	shell	direct	high	239	0.996	GCA_001431425.1_02543
GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote	cenote	CDS	11369	12391	GCA_001431425.1	LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425.1_LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425_1_29	GCA_001431425_1_29@C0	11370	12392	GCA_001431425_1_29_24	GCA_001431425_1_29_24	+	26622	.	PFAM:PF07120.10	replication-protein	MEPLVPADVDLRDFAFMPVDVQRLLTSETWILGSGDERSAAMTLWLVSWHQVPAASLPDNDKMLSHLSQSKSWPRIKEHALRGWVLAADGRYYHPVVAEKALEAWLEKLAQRLSGGAGNAKRWGVEFDPTPIEDAIRESRALLSALNPQSRALSRKRTAAIATGQKRESGCDRGAILSGSQETGTGTGTGKEELKSSLRSDSSSAAPDDVSPDGGKGGDKAQRLAEVTDEAIAAWNASRLVKPNGGLLATVNAAVGRDNRRNQVKRCIAIARDICREQGHQRIPAEFWAEYFAVAAKDDFHSGRQGGGRGHENWTPDFEFLTQPKTMLKLFERVESEEAG*	phrogs_hmm	hypothetical_protein	C0	26623	0	26623	GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote_CDS_0024	shell	direct	high	1022	0.999	GCA_001431425.1_02544
GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote	cenote	CDS	12391	13827	GCA_001431425.1	LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425.1_LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425_1_29	GCA_001431425_1_29@C0	12392	13828	GCA_001431425_1_29_25	GCA_001431425_1_29_25	+	26622	.	PDB:3BGW_F	DNAB-Like-Replicative-Helicase	MYDADQALAHLRVPPQSVAAEQAVIGGLLQYPEAWGRVEALLQPNDFYRRDHQLIYRTIREMVARDRPFDAVTLGEWFESQARAADRDDDGIGSYLIDLAATTPSAANIAGYAQIVSDKALARRMIEIGTEITNAGFDPSFTPDEGIAAAQTLMQGLAPSQTGGLVSVTDTLPDWFDDLRHRFELGTSVTGVPTPWAALNDATHGLQDGDLIILAGRPSMGKSIAGLNITDFAARDRHVALFSLEMSKKQINRRGISAAARVPHDWLLAPGGADEHWSKVTGAVRDRRALQLSIDDTPSLRISQLMARARALHARNPIRLLVVDHIHDFKIDAKLARFEYGEIAQGLKTLAKEFSCPVVALGQLNRALSQRSDKRPTMADLRESGEIEQKADMIIFIHREDYYDKNTHMRGVVELILAKGRDVEAGKSIFLANDYAHMALRDMDGPLPLPAEPDRGSKAGKTRFFGGGAGRRLAPEED*	rep_hall_hmm	common_virus	C0	26623	0	26623	GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote_CDS_0025	shell	direct	high	1436	0.999	GCA_001431425.1_02545
GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote	cenote	CDS	13827	14201	GCA_001431425.1	LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425.1_LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425_1_29	GCA_001431425_1_29@C0	13828	14202	GCA_001431425_1_29_26	GCA_001431425_1_29_26	+	26622	.	pfam16786	Recombination enhancement, RecA-dependent nuclease. REF is a family of P1-like phage RecA-dependent nucleases. It does not appear to act as a positive RecA regulator. It is a new kind of enzyme, a RecA-dependent nuclease.	MAMSHSTGAPTAAEAERIVEAKEGPCMACLALVTADLLAPELVVIGCDYNHAKSGNVRRGHMFGYALCAWHHRRHPLEGNTFAWMRAIYGPSLLDGSRVFHETYGSDDELIEQQTYVIEQRRAA*	mmseqs_cdd	nonviral_gene	C0	26623	0	26623	GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote_CDS_0026	shell	direct	moderate	368	0.981	GCA_001431425.1_02546
GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote	cenote	CDS	14198	14809	GCA_001431425.1	LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425.1_LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425_1_29	GCA_001431425_1_29@C0	14199	14810	GCA_001431425_1_29_27	GCA_001431425_1_29_27	+	26622	.	PFAM:PF03589.12	anti-termination-protein-Q-like	MSNVRELLARLNPTVARLDGAAGGGVAELSNIDIAGALGMVPAGIGRDLLELLHGPDPSRGDILRVLEGITRMALEERNRRSKDYADARATWGIADCMARFNRDREERTVRHLEILKARVAVARDRLWPERLEERMPDIATVAIGYMKGERLSNRERATAMGVGDSTYREGWAEVVDWLLTQMLEAEQCAANRFCHALQQSAA*	phrogs_hmm	hypothetical_protein	C0	26623	0	26623	GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote_CDS_0027	shell	direct	high	611	0.998	GCA_001431425.1_02547
GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote	cenote	CDS	15726	16028	GCA_001431425.1	LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425.1_LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425_1_29	GCA_001431425_1_29@C0	15727	16029	GCA_001431425_1_29_28	GCA_001431425_1_29_28	+	26622	.	pfam16082	Bacteriophage holin family, superfamily II-like. Phage_holin_2_4 is a family of small hydrophobic phage proteins called holins with one transmembrane domain. Holins are produced by double-stranded DNA bacteriophages that use an endolysin-holin strategy to achieve lysis of their hosts. The endolysins are peptidoglycan-degrading enzymes that are usually accumulated in the cytosol until access to the cell wall substrate is provided by the holin membrane lesion.	MPNRANYRDQTVQENADATLITVGKVSTIVGGSTAFVGGLSASDLAAFAGIAGMAVGLFIQWYYTRRKDRREAARDAESDRREAVEHAARMESYRNGRIE*	mmseqs_cdd	nonviral_gene	C0	26623	0	26623	GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote_CDS_0028	shell	direct	high	302	0.997	GCA_001431425.1_02548
GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote	cenote	CDS	16012	16620	GCA_001431425.1	LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425.1_LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425_1_29	GCA_001431425_1_29@C0	16013	16621	GCA_001431425_1_29_29	GCA_001431425_1_29_29	+	26622	.	PDB:3HDF_A	Lysozyme	MAGSSESKGGPVRVLAVGLALSVAAFAGWVAKEGDGPTAVRADGQVVHQPYIPTKGDVPTIGHGSTRYEDGRPVRLTDAPITRARAAELARNLHREEEARFKASIPGVSLTQGEFDLYVDFIGQYGIGNWRQSSMRRHLLATVEARTPAGQAFHYRAACDALLAWRKQGGRDCSLPQSWGPKGCKGVWTRQQERHAKCVAEQ*	common_virus_hmm	common_virus	C0	26623	0	26623	GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote_CDS_0029	shell	direct	high	608	0.998	GCA_001431425.1_02549
GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote	cenote	CDS	16859	17437	GCA_001431425.1	LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425.1_LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425_1_29	GCA_001431425_1_29@C0	16860	17438	GCA_001431425_1_29_30	GCA_001431425_1_29_30	+	26622	.	PFAM:PF03245.12	Rz-like-spanin	MNISLDPLRPYADLTRWAAGLLLALLVLAFGYRWGGSHWRGEYQAEVQARAAENAKHAATLQQLAEATAAVAAKARAASTALAAARQANDTRYQKAINDANRAERDLAAALRRGSVQLRPEWACGSPGAGAGGAAVFARGQDAAAELRWAGATHLVAGGDRADAWIGWLQRELIDTRRAVVAAGCAIEVPDR*	phrogs_hmm	hypothetical_protein	C0	26623	0	26623	GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote_CDS_0030	shell	direct	high	578	0.998	GCA_001431425.1_02550
GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote	cenote	CDS	17434	17790	GCA_001431425.1	LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425.1_LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425_1_29	GCA_001431425_1_29@C0	17435	17791	GCA_001431425_1_29_31	GCA_001431425_1_29_31	+	26622	.	PFAM:PF06356.10	Endonuclease	MKRRAGGGYLALGRLKPGDMNQTEKAYAEHLSALQHAGEILWFRFEGIKLRLADKTFYTPDFAVLAADGVMEMREVKGFWLDDARAKIKIAADQYPFRFIAVRVRPKKDGGGWAVEEF*	common_virus_hmm	common_virus	C0	26623	0	26623	GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote_CDS_0031	shell	direct	high	356	0.997	GCA_001431425.1_02551
GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote	cenote	CDS	17790	17924	GCA_001431425.1	LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425.1_LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425_1_29	GCA_001431425_1_29@C0	17791	17925	GCA_001431425_1_29_32	GCA_001431425_1_29_32	+	26622	.	.	hypothetical protein	MSKTVTASIGWRWWVRWYLRAVVWFARAGAPGRDFAHRGEFGPR*	.	hypothetical_protein	C0	26623	0	26623	GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote_CDS_0032	shell	direct	high	134	0.993	GCA_001431425.1_02552
GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote	cenote	CDS	18034	18537	GCA_001431425.1	LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425.1_LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425_1_29	GCA_001431425_1_29@C0	18035	18538	GCA_001431425_1_29_33	GCA_001431425_1_29_33	+	26622	.	pfam07278	Protein of unknown function (DUF1441). This family consists of several hypothetical Enterobacterial proteins of around 160 residues in length. The function of this family is unknown. However, it appears to be distantly related to other HTH families so may act as a transcriptional regulator.	MADIHEFSQGWSIGRLAEEFRMDRRTASKRLKEAGIPPLAKRGGHDVYRLADAAAALVDPIAQGAGADAVVDPRDLPPMERRAYYQSENERLKVESTIGQLVPAAEVEADYADLVKKVVQFFDTLPDVLERKAGLTPDQVVKVQDECDRVRQSMYEGITDDDVRDSA*	mmseqs_cdd	common_virus	C0	26623	0	26623	GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote_CDS_0033	shell	direct	high	503	0.998	GCA_001431425.1_02553
GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote	cenote	CDS	18512	20599	GCA_001431425.1	LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425.1_LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425_1_29	GCA_001431425_1_29@C0	18513	20600	GCA_001431425_1_29_34	GCA_001431425_1_29_34	+	26622	.	PFAM:PF05876.12	Large-Terminase	MTTYATARSVRLGVAEMIRPPRRILVSEGAKALQVANAAGAAGAWDPHTTPYMVEPLDTTGSRHYEAVVFVGPARSGKTISLIDARLAYLITCNPADAMVVQMSKDAAEDYSKTRISRSIAASPELRSRLSPRAHDDNILLKFFRSGMSLRMGWPSVSVLSGKDIHDVLMTDVDNYTGDLAIDECFGLALKRTQTYMSAGMVVAESSPATDYADGAWKPSDPHQGPPAAGIAALYARGDRRRWYWPCPECGERFQAAPGYDGFALPPLEELLERVVLDDVQKLARHYSLLHCPHCGVGLQHRWKEGMNRSGVWAAEGQVVHPDGTVTGERQEARIASFWLGGVAAAYQSWESLVERYFQALRTFATTGEERPLKTTHNVDGAINYVPMAARSVSDPNEMRKRAEDWGRGAVPPGVRFLAATVDVQGNRFVVLVLGFGIGESGQLERWVVDSFTLRTSARPDGSGGFLPLDPPKYLEDWERLVEKVITRRYPLADGTGRTMPIRVTGIDWGGKSGTSVRALEFWRSLKVRNLHTRVRLIKGDTRREGPLFRETFPDSSKRKDRKSGSKGDVPQLLLNVDRLKDTVSANVKRAEPGPGYYHFPDWLPEAFYAELTAESRTAKGWENLANRRNEAFDLCGYAEGLALWMKVPAINWTAPPSWAAEWDDNPDVRADDAAPAPPPRARTRRVIRSKYLGR*	hallmark_hmm	common_virus	C0	26623	0	26623	GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote_CDS_0034	shell	direct	high	2087	1.0	GCA_001431425.1_02554
GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote	cenote	CDS	20601	20819	GCA_001431425.1	LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425.1_LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425_1_29	GCA_001431425_1_29@C0	20602	20820	GCA_001431425_1_29_35	GCA_001431425_1_29_35	+	26622	.	PFAM:PF02831.14	head-tail-adaptor-Ad1	MAFTKEQTAALEEAIAAGVLSVRYADRTVTYQSLDAMRRLLKQMREEAGQGTAPARRRQRVVRLYQSGTGNV*	phrogs_hmm	hypothetical_protein	C0	26623	0	26623	GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote_CDS_0035	shell	direct	high	218	0.995	GCA_001431425.1_02555
GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote	cenote	CDS	20812	22293	GCA_001431425.1	LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425.1_LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425_1_29	GCA_001431425_1_29@C0	20813	22294	GCA_001431425_1_29_36	GCA_001431425_1_29_36	+	26622	.	CDD:pfam05136	Portal-protein	MSEAVEGSYRAAGNGRRLRTFRPMSLGPNGALLGLPTLLARARHLARNDPWMVSALNKSVSNGIATGIQAKAIWGSKAHKAQVAQLWRRWGKYADADGVLDWSGLQALAWREWKEAGEVFARLRYRRREDGLPVPLQVQLIESEQCPQHYNGVASNGNAIRQGIEFDQIGRRVAYWMFREHPGDQHLAVNGNELVRVPADQVLHLYRPNRAGAIRGVPGSAPALLRMFNLDRLDDAVLERQALANLFTGFITKKSSGDGEEGEAVGDLITGEDDDGAAIGGLEPGTMQELPPDTEVKFSEPPGAGADYGDFLRGHLLAIAASQDVPYEVLTGDLRNVSDRALRLILNEFRRVIEQDQWLFMIPMFCQRVRDAFFDQAVLSGLLKVQGYASLRDDVTETLWVPEGWPWSHPVQDVNSEVKAVRAGFKSRSAVVLGSGEDPEQVDREQKDDNDRADKAGLTYDSDPRRTNASGARQGTKTGAESAADDEGNNDDE*	hallmark_hmm	common_virus	C0	26623	0	26623	GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote_CDS_0036	shell	direct	high	1481	0.999	GCA_001431425.1_02556
GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote	cenote	CDS	22283	23698	GCA_001431425.1	LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425.1_LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425_1_29	GCA_001431425_1_29@C0	22284	23699	GCA_001431425_1_29_37	GCA_001431425_1_29_37	+	26622	.	cd07022	Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.	MTSKPGLLARLLNRGNKAPVVATLAAAVLNQPLLVQPAIGEALVGGYLEGKITSADSELRADRFEVTGSAGETVGVTQSVIGVINLSGAMVNRPMPGASGPGPVSYAAIRTAFDELLEDDAVTAIILRLDTPGGMASGCFDLVDHIYQARGRKPLYALVDDYAASAGFALASPCDEIWVSRTGTVGSVGVVAYHYDWSGNNAQIGLKVTPLYAGARKVDFNPNFPLSEEAHAQALADLEDMRTLFVDTVARNLGMEADAVRATEAATYRGQAAVDIGFATRLGTWHDLIAHLGAGGTPAPAAAGDDADDGDPEANASAKSAFSLLGDEFKVIAEKSGTQPAAAASASAAAPAEQPSLAATVAASDLPATICMALLRRGEKLGEESAAALEYANGVLDACAATVAGGEALAASFIEKNTDLDTVRTQLLSMKAEEGRNSQVITAHPASTAETRAAEVKAKLDPTNIYKNRGN*	mmseqs_cdd	common_virus	C0	26623	0	26623	GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote_CDS_0037	shell	direct	high	1415	0.999	GCA_001431425.1_02557
GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote	cenote	CDS	23700	24380	GCA_001431425.1	LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425.1_LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425_1_29	GCA_001431425_1_29@C0	23701	24381	GCA_001431425_1_29_38	GCA_001431425_1_29_38	+	26622	.	pfam02924	Bacteriophage lambda head decoration protein D. 	MEISLAGTRTGEFLLSEASGERSRELIRIPAGQGMLAAGTLLKADNTIAVNGADAVKVLYGPVDTGTDTGALAVKGAAVARDAEVFGEKLAWASGMTADQKLLAAVSLAESGIITRWMETPIASGAAHHLVFVDTPLVGKAGEVLGPIVAHVKDVFGALVTGSTVSVTLAKASGTGNLAGGGAKAAVGGVITWDAASLSAAGEYTLKVTATDLTEATSDTITIDAA*	mmseqs_cdd	common_virus	C0	26623	0	26623	GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote_CDS_0038	shell	direct	high	680	0.999	GCA_001431425.1_02558
GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote	cenote	CDS	24467	25468	GCA_001431425.1	LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425.1_LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425_1_29	GCA_001431425_1_29@C0	24468	25469	GCA_001431425_1_29_39	GCA_001431425_1_29_39	+	26622	.	PDB:3BQW_A	Major-capsid-protein	MELQILLALGALGFGELNAYINNLPRISTRIADMNLFQEEGLVGTTIVKIGIKDNKLVLVPNVPRGSPGQPKGLDRGKVKLLETTHLPQNSTVMADQLLGVWDPADPAGTNVAAVVNGLQVVHKRDLDYTIEYHRMGALQGKLLDADGSVILDFYDEFGVEQSVIGMELTKPDTKVRSKVVSIKRAIEAKLGGVPYTGIHVFCSAGFFDALVDHPEVQEAYKRWQDGAALRSDLRKGFTFGDVTFEELPGSAGSKIALPDNEAIAFPLGVPDMFLTRFAPADYLETVRGIGLPYYSKTAPMRMNKGIQLESQSNPLNINTRPDAVIRLKPGAK*	hallmark_hmm	common_virus	C0	26623	0	26623	GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote_CDS_0039	shell	direct	high	1001	0.999	GCA_001431425.1_02559
GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote	cenote	CDS	25512	26279	GCA_001431425.1	LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425.1_LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425_1_29	GCA_001431425_1_29@C0	25513	26280	GCA_001431425_1_29_40	GCA_001431425_1_29_40	+	26622	.	PFAM:PF06763.10	minor-tail-protein-	MAQIRIGVDPENVLGRRLTELERNQLPFAARQATNQVAFEVREEWKRKASRVFDRPTPLTVNATMYRKATKQWPFAEVYIRDEAFKGTPPAKYLMAEVDGGQRRMKGFERLLQSRGLLSPSQFAVMGKGAAPNQFGNVPAGQVTKILSQLGAQRDHYQNQSDTSAGRRRNTRKRARGGEYFVLTRKRGRLAPGIYERIATPWGSAVRSIFIFTSDARYRPRYDILGMAEKTWQKLMPFYLGRELEKAMQSARPAP*	hallmark_hmm	common_virus	C0	26623	0	26623	GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote_CDS_0040	shell	direct	high	767	0.999	GCA_001431425.1_02560
GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote	cenote	CDS	26276	26608	GCA_001431425.1	LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425.1_LDJG01000036.1	GCA_001431425.1|LDJG01000036.1	GCA_001431425_1_29	GCA_001431425_1_29@C0	26277	26609	GCA_001431425_1_29_41	GCA_001431425_1_29_41	+	26622	.	.	hypothetical protein	MNQKAFLQRFDALAFGALRNAGVADAASYTAKGGIQSVPCTVMLDEGVQQFGDDDLAPVATLSSRIRLQLAEVKPGGGAVVRIIATGKQWVLVKKLAGDASSELWEVAGA*	.	hypothetical_protein	C0	26623	0	26623	GCA_001431425.1|LDJG01000036.1@region_1_26623@tool_cenote_CDS_0041	shell	direct	high	332	0.997	GCA_001431425.1_02561
GCA_001431425.1|LDJG01000049.1@region_1_12553@tool_cenote	cenote	CDS	2	430	GCA_001431425.1	LDJG01000049.1	GCA_001431425.1|LDJG01000049.1	GCA_001431425.1_LDJG01000049.1	GCA_001431425.1|LDJG01000049.1	GCA_001431425_1_39	GCA_001431425_1_39@C0	3	431	GCA_001431425_1_39_1	GCA_001431425_1_39_1	+	12552	.	.	hypothetical protein	PRMRLLDAMAKCLAAITVENGFRTDAGLSWTLEPAPADGTADAVLTAVIDKQQRAVDPALSKTHRLTTVSVMAKVPAALGSGQTQLDAMVSDIEEAMANKQHQYPRGITFPIYVSMEPLMPESAGAGWVGVAVTYQSNTPNK*	.	hypothetical_protein	C0	12553	0	12553	GCA_001431425.1|LDJG01000049.1@region_1_12553@tool_cenote_CDS_0001	shell	direct	moderate	422	0.984	GCA_001431425.1_02737
GCA_001431425.1|LDJG01000049.1@region_1_12553@tool_cenote	cenote	CDS	465	1226	GCA_001431425.1	LDJG01000049.1	GCA_001431425.1|LDJG01000049.1	GCA_001431425.1_LDJG01000049.1	GCA_001431425.1|LDJG01000049.1	GCA_001431425_1_39	GCA_001431425_1_39@C0	466	1227	GCA_001431425_1_39_2	GCA_001431425_1_39_2	+	12552	.	PDB:5A21_H	major-tail-protein	MQGQMQDQSYLGSGKLLIREFGARAPFEEVGNCSAVTLSPQTNTIALADGTAPGGGERNRVDRLTGVEFAYTFHDFAPENFARALRGTSSKVAAGKAVDEPITAYKGGFTPLGKIATAVTAVKPDTGSAVLEAGKDYIFQDGGLYIPEDSTIPTSTDGKPNIKVSYDYGAQTTVQALVNPAKQYEMLFLGLNEAQSGKAVRIRVHKVSGGVMAQLGLIGDQHGQGEVTGALLPDTSKGAQLSKYFVVDQEVVG*	hallmark_hmm	common_virus	C0	12553	0	12553	GCA_001431425.1|LDJG01000049.1@region_1_12553@tool_cenote_CDS_0002	shell	direct	high	761	0.999	GCA_001431425.1_02738
GCA_001431425.1|LDJG01000049.1@region_1_12553@tool_cenote	cenote	CDS	1223	1687	GCA_001431425.1	LDJG01000049.1	GCA_001431425.1|LDJG01000049.1	GCA_001431425.1_LDJG01000049.1	GCA_001431425.1|LDJG01000049.1	GCA_001431425_1_39	GCA_001431425_1_39@C0	1224	1688	GCA_001431425_1_39_3	GCA_001431425_1_39_3	+	12552	.	PFAM:PF10109.8	tail-assembly-chaperone	MSWVTPATGADDMEVLAPASISVAYKGQSLVIHPLSIGVIPAVVRELRPVIASLREKAATTDGAFDVEVTPELIMDLVVDYSEPLFIATALCSGQPVDLIRSGDPAEFIELAMAVGRVNSDFFLRRIVPLLGDLKGEFSKAARPPGDGQTPSSF*	phrogs_hmm	hypothetical_protein	C0	12553	0	12553	GCA_001431425.1|LDJG01000049.1@region_1_12553@tool_cenote_CDS_0003	shell	direct	high	464	0.998	GCA_001431425.1_02739
GCA_001431425.1|LDJG01000049.1@region_1_12553@tool_cenote	cenote	CDS	1868	4840	GCA_001431425.1	LDJG01000049.1	GCA_001431425.1|LDJG01000049.1	GCA_001431425.1_LDJG01000049.1	GCA_001431425.1|LDJG01000049.1	GCA_001431425_1_39	GCA_001431425_1_39@C0	1869	4841	GCA_001431425_1_39_4	GCA_001431425_1_39_4	+	12552	.	Uniprot:L1P4F2_9FLAO	tail-tape-measure-protein-	MSNAQQPNLRVRFSADLNDIKQGFAALRSDVAALRREASKSVDLKGITDGIAQFRNVIGGLFAGVTVGSLFRSIITETRDASGEVAQLQAVLKSTGQQAGYTQQQLLDMSSSMSEATTHSAGEIVRAQTRLLSYTGIVGKQFPQALQMAIDQSARLGESIEQSAETIGKALDKPSQGVAALTKQGFKFTEQQKLQMKIMEATGRTAEAQQIVLDAMAESYAGAGAAARNTFGGALAGVGNALRDLVDGSGSGSLSSVISAINGVAAALASPEMKAAAAGLTDAVLQLVGGFARFVAQDGARYLRLLGEAAALTIKHIDLLAVAVGAYLAARGIAAAIIGVQALIKWLAAMRAALAVSAIAANGLKATLATMGGPITLALVALTTVLYELYQRTEQAKQAQDEHKRALKEVGDMSKYARDQAFEVAKAKREEALTTMMAAKAQLQAAKINARENVDAGRGGGNLLGLQSSSRASMNPALVQAEADAARAQKMLDEWDDKIFEILTSGIDNILKPVDAAVAETGKSIAKSNALMIDAIRRTMAELDALYGRGGISIAEYFSKRTALQQKSIDLEIEQARSELAITTEAAGRRRIEEQIVKLQRDRAEVATTAATEQKKAEEGLAQSLAEVKNRLLELDGKAGEAQRAQLENQYKALMQRLRAEGDATGQALVSSLIDRLVAKAKSDELRDALGKITSQLQGKETAIGAQVGAGMLGYGEGEAQLKIARSQALEQLRALRVAAVDSMQGLAKGSPEQAAAIAGLQEIDVQIAQVVQAQRVWQQKFQDMGAASLGDFFADMATRAKGFKDSFDDMVKGFVAGVARMVAQEAAMRALRSMFNFGGSGGGAAGGVMGWVSSLFQARKHHQGGLVGTGGTGVRIAISPEMLGSAPRFHDGGGFGLKADERVAVLQTGERVLSRRQTAAYDSAGSAGSMKVEIHNNGAPARVESAQIWRGADGEQLLKLFLAAAADDVASGGQIGRAGVARYGWSERL*	hallmark_hmm	common_virus	C0	12553	0	12553	GCA_001431425.1|LDJG01000049.1@region_1_12553@tool_cenote_CDS_0004	shell	direct	high	2972	1.0	GCA_001431425.1_02740
GCA_001431425.1|LDJG01000049.1@region_1_12553@tool_cenote	cenote	CDS	4870	5193	GCA_001431425.1	LDJG01000049.1	GCA_001431425.1|LDJG01000049.1	GCA_001431425.1_LDJG01000049.1	GCA_001431425.1|LDJG01000049.1	GCA_001431425_1_39	GCA_001431425_1_39@C0	4871	5194	GCA_001431425_1_39_5	GCA_001431425_1_39_5	+	12552	.	PFAM:PF05939.12	virion-structural-protein	MDGISESFDPGVERTEMERGVPKQRIVNTRVMAKIKASFYFETVAAADEFEDWYFDTLKRIGWFKFRNPRNGRELMVRFEGGSIGELTLIDDAAFDSKRTVVMEYLR*	phrogs_hmm	hypothetical_protein	C0	12553	0	12553	GCA_001431425.1|LDJG01000049.1@region_1_12553@tool_cenote_CDS_0005	shell	direct	high	324	1.0	GCA_001431425.1_02741
GCA_001431425.1|LDJG01000049.1@region_1_12553@tool_cenote	cenote	CDS	5190	5651	GCA_001431425.1	LDJG01000049.1	GCA_001431425.1|LDJG01000049.1	GCA_001431425.1_LDJG01000049.1	GCA_001431425.1|LDJG01000049.1	GCA_001431425_1_39	GCA_001431425_1_39@C0	5191	5652	GCA_001431425_1_39_6	GCA_001431425_1_39_6	+	12552	.	PFAM:PF09931.8	minor-tail-protein	MTAFLERRQRVTDTAGTLLFLEVSAPSFAETLRIVNDTQNWVSNGVEYLACPFGFKLPDDMSGQTPRAVLTLDNVGRGIAEDLERLLPGDVVMAKLMLSDRADPNVIERTYLLPLTQVSVNARTATAQCGYDAIMRQQAVRLRYNPFTAPGAF*	phrogs_hmm	hypothetical_protein	C0	12553	0	12553	GCA_001431425.1|LDJG01000049.1@region_1_12553@tool_cenote_CDS_0006	shell	direct	high	461	0.998	GCA_001431425.1_02742
GCA_001431425.1|LDJG01000049.1@region_1_12553@tool_cenote	cenote	CDS	5651	6043	GCA_001431425.1	LDJG01000049.1	GCA_001431425.1|LDJG01000049.1	GCA_001431425.1_LDJG01000049.1	GCA_001431425.1|LDJG01000049.1	GCA_001431425_1_39	GCA_001431425_1_39@C0	5652	6044	GCA_001431425_1_39_7	GCA_001431425_1_39_7	+	12552	.	PFAM:PF16467.4	minor-tail-protein	MRLADVERFVAIPYDEREFDCADLVVLVQRALFGRTVQLPGRRPRGVEGQAALGELSRPYGRRTDTPQDGDLVLMVEHGQKRPGHAGVFFFLAYEGWVLHTNERNGCSVLHRVRELPDFGLRIEGYYAWV*	phrogs_hmm	hypothetical_protein	C0	12553	0	12553	GCA_001431425.1|LDJG01000049.1@region_1_12553@tool_cenote_CDS_0007	shell	direct	high	392	0.997	GCA_001431425.1_02743
GCA_001431425.1|LDJG01000049.1@region_1_12553@tool_cenote	cenote	CDS	6034	9429	GCA_001431425.1	LDJG01000049.1	GCA_001431425.1|LDJG01000049.1	GCA_001431425.1_LDJG01000049.1	GCA_001431425.1|LDJG01000049.1	GCA_001431425_1_39	GCA_001431425_1_39@C0	6035	9430	GCA_001431425_1_39_8	GCA_001431425_1_39_8	+	12552	.	PFAM:PF13550.5	phage-tail-protein	MGVMQQPPLGPGQLIVTPHPLMLDGQRNVVWEARAGESLYAILQRNVPELDGQRWEVCIGGRAVERHLWHHVYPKQGQVIEVRGGVGKSALAVVALIALTYFTFGAGGMAGGAFLGLTGVAGYAAATAAYMAGAMLVNKVLAPKPPRTDNRQQDPVYSISGARNQLRPYDPIPLLFGRVRITPDLLSKPYTWYEGNDQFLGLLLSAGINVGRIEALYNGDTPLSNYEGVQVYHAGYSQMPEQTIPLYSNADTIDGAELTKDKAWVERATSADTVRIHINLEYVLGGTGTSGKSYYVSETVEAQYRPAGSATWQPLASQTFRSDRFDVRRATLARDVARGQYDVRVRMLGQGNYEGKNTQKNDFQWTQLTSVQADDADYTGIARSGVRIKATGQLNGTPDELRGVAFAAPIPEWTGTAWVTKESSNPGAQGPAYARGIWAGSRLLAGMALADAQIDIESWKAFTLHCAANGYTYDFCVKEARSHTDVLAAIARAGFGEITWAGGRLGVVWAAQEQPLSGVVAMPTIKKGAFQVDYTLANAADGIEYTYIDSTDWQAKTLRVPAPGVDIMLNPAQVSGEGVSTEEHAARLARWHLAQSLYQYKDIGYSTDIEHLSYQRLSLLALQHDLTQWGYGGRVQGASGTGGAMTLLLDEPVPAPAAGNAYIGLRIPGERVYRVLRVQPFSGTSNTITLADPWPADAAIPGANPDNPAHDTIWVYDFRQTPGYRVRVTSIEPEPDLKGAAVRVVPEGPEFWDYVLTGHYIPAPNQSLLQTRPVASNLRISEAQIVQGNTTFTELTATFDVTGPVGTTVVRAAGAGGELQDVAQTVTRTATWRINEPGTYTIVVRPFSPDGEAGVAVQATYTTGGAGLPPVLVDLFDVTERSGGVRVYSWGWLADTMRSPDFAGVEIRYVAGAVATPDWDAMTPLGESGYYTAPFESVLPAAGEWTIACRSRNTAGQLSGGMRTVTKTFGPNLGEIIAGLDPEDVTEQLIDLQLQLEQERVDRFKSDAAAAQALADAQQSNAQQLAAEASQRAADMQAERIAREAAVASAQTRINEILSDGVITPDEKPALKQALQVLLAELPGIRVEALASEVTAELTAYEAALNALVAYLNTLTTPTRWDDPSGNTIIN*	hallmark_hmm	common_virus	C0	12553	0	12553	GCA_001431425.1|LDJG01000049.1@region_1_12553@tool_cenote_CDS_0008	shell	direct	high	3395	1.0	GCA_001431425.1_02744
GCA_001431425.1|LDJG01000049.1@region_1_12553@tool_cenote	cenote	CDS	9439	9885	GCA_001431425.1	LDJG01000049.1	GCA_001431425.1|LDJG01000049.1	GCA_001431425.1_LDJG01000049.1	GCA_001431425.1|LDJG01000049.1	GCA_001431425_1_39	GCA_001431425_1_39@C0	9440	9886	GCA_001431425_1_39_9	GCA_001431425_1_39_9	+	12552	.	.	hypothetical protein	MANNASTALKNGLAALIFNNAALTGIGDSGGLLPSAAAGVLYVSAHTADPGVGGTQSTSEANYTGYARVAVARTSAGWTVAGANAKNAADVLLPEATGGSSNVTYFGIGTAASGAGKLLFKIPATQTYAVTTGVALKIAAGVIDITVE*	.	hypothetical_protein	C0	12553	0	12553	GCA_001431425.1|LDJG01000049.1@region_1_12553@tool_cenote_CDS_0009	shell	direct	high	446	0.998	GCA_001431425.1_02745
GCA_001431425.1|LDJG01000049.1@region_1_12553@tool_cenote	cenote	CDS	9890	10423	GCA_001431425.1	LDJG01000049.1	GCA_001431425.1|LDJG01000049.1	GCA_001431425.1_LDJG01000049.1	GCA_001431425.1|LDJG01000049.1	GCA_001431425_1_39	GCA_001431425_1_39@C0	9891	10424	GCA_001431425_1_39_10	GCA_001431425_1_39_10	+	12552	.	PFAM:PF10983.7	virion-structural-protein	MADEYTATDFNGLPPAATLEGTDVVPLQRGTGADSTKRTTVSGIAAKTLAGILTSSGVRATINGDQVTIEGVGAAIVEITGSAYTLGLQNMNRFNPCNNATAQTITIPPQSSVAWPNDIQLEGAQTGAGAVTFVAGPGVTLRKSSDITATTKNQYSPWGLKRIGLNEWLLFGKMGGA*	phrogs_hmm	hypothetical_protein	C0	12553	0	12553	GCA_001431425.1|LDJG01000049.1@region_1_12553@tool_cenote_CDS_0010	shell	direct	high	533	0.998	GCA_001431425.1_02746
GCA_001431425.1|LDJG01000049.1@region_1_12553@tool_cenote	cenote	CDS	10856	11185	GCA_001431425.1	LDJG01000049.1	GCA_001431425.1|LDJG01000049.1	GCA_001431425.1_LDJG01000049.1	GCA_001431425.1|LDJG01000049.1	GCA_001431425_1_39	GCA_001431425_1_39@C0	10857	11186	GCA_001431425_1_39_11	GCA_001431425_1_39_11	+	12552	.	.	hypothetical protein	MAVILSETQNIEERIELYAPDIRIQGNPVDKPAGSIQLELHKLEYRNGEFVRMDPLGIVGETVGEFAAREFEVNGKTITGLDVVTVVEAYTAMMYQERIAGAVEESDPA*	.	hypothetical_protein	C0	12553	0	12553	GCA_001431425.1|LDJG01000049.1@region_1_12553@tool_cenote_CDS_0011	shell	direct	high	329	0.997	GCA_001431425.1_02747
GCA_001431425.1|LDJG01000049.1@region_1_12553@tool_cenote	cenote	CDS	11182	12549	GCA_001431425.1	LDJG01000049.1	GCA_001431425.1|LDJG01000049.1	GCA_001431425.1_LDJG01000049.1	GCA_001431425.1|LDJG01000049.1	GCA_001431425_1_39	GCA_001431425_1_39@C0	11183	12550	GCA_001431425_1_39_12	GCA_001431425_1_39_12	+	12552	.	.	hypothetical protein	MTKYLVTGDGRRLLAGSGIPLTADAPGDAYQRVELETATLAVTAAPIAAATAVSVALAAATLGFAAAPVQAETLDDGSRVRLELVTLSFDAAPVAASLSVPVWLDAATLAFDATRVACGAIVAVGADPATLSFDATPVAAIVARITSVALAPASLQWQCAPVTAVRVAGVSLQPAYLAFDAPAVTAQRLVRLPVALQPATLGFIAQSITATQSAAAKFRGYWLSAYGTRQAVLNAIDANNRFLAKQAGDKAQATADALVITDTSVRQLGDTVAAQGTRIEQVSASIPGSGGNLLRKSDFSDMSAGGWYNAQVGVAPSSGFGSQPATTYQGPFIVPYDGGTFEDAWFPVTPGEVFDISANAFNTTNASGQFGVHFVDRNGVGTGWLAPATPAAGLWGKISGQVTAPPGSVRGRGWINPGSAGNNIWISLPDVRRQGETAGANSKALSQIEATVTQQG	.	hypothetical_protein	C0	12553	0	12553	GCA_001431425.1|LDJG01000049.1@region_1_12553@tool_cenote_CDS_0012	shell	ambiguous	low	624	0.456	GCA_001431425.1_02748