core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_001454905.1|CP013288.1@region_615568_627878@tool_cenote	cenote	CDS	615567	616265	GCA_001454905.1	CP013288.1	GCA_001454905.1|CP013288.1	GCA_001454905.1_CP013288.1	GCA_001454905.1|CP013288.1	GCA_001454905_1_1	GCA_001454905_1_1@C39	1	699	GCA_001454905_1_1_620	GCA_001454905_1_1_620	+	2950820	.	COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant) [Signal transduction mechanisms]. 	MKFQLFIQPKLDVLQGNIVEYEILLRDDSAVPRFPLSELEAVLADEELYLAFSEWFSEAFLDVLKKYPNDRFAINIAPQQLFYIETLHWLDKLKSESHRITVEMTEDIFDVPGHKRHLNANDKNAFILNKIKVIHGLGYHIAIDDVSCGLNSLERVMSYLPYIIEIKFSLIHFKNIPLEDLLLFIKAWANFAQKNKLDFVVEGIETKETMTLLESHGVSIFQGYLVNKPFPV*	mmseqs_cdd	nonviral_gene	C39	12311	615567	627878	GCA_001454905.1|CP013288.1@region_615568_627878@tool_cenote_CDS_0001	persistent	direct	high	698	0.999	GCA_001454905.1_00630
GCA_001454905.1|CP013288.1@region_615568_627878@tool_cenote	cenote	CDS	616235	616930	GCA_001454905.1	CP013288.1	GCA_001454905.1|CP013288.1	GCA_001454905.1_CP013288.1	GCA_001454905.1|CP013288.1	GCA_001454905_1_1	GCA_001454905_1_1@C39	669	1364	GCA_001454905_1_1_621	GCA_001454905_1_1_621	-	2950820	.	4CYD_A	PROBABLE TRANSCRIPTION REGULATOR, PROBABLE EXPRESSION	MFHTIDFSDIFSSDYSNKISFKKGEIIHSYRDYEEKTPQIGAILEGTAVLEGPTNEGRWMINALIGQHSLFGMESLLETKTAPELTEYRVRALENGTVLFIDREFLLNYLYANPQFFHLILDEVIVRYLFTSKNYKNINQAPIVKVTRILVEIIELLHLHQTEGAIELPVYVTQTFLADYCRSSRARVTEVLEELRESGLLLSKKPITISSHENLLNQIDSFQTGNGLLTR*	hhsuite_tools	hypothetical_protein	C39	12311	615567	627878	GCA_001454905.1|CP013288.1@region_615568_627878@tool_cenote_CDS_0002	persistent	direct	high	695	0.999	GCA_001454905.1_00631
GCA_001454905.1|CP013288.1@region_615568_627878@tool_cenote	cenote	CDS	617149	617610	GCA_001454905.1	CP013288.1	GCA_001454905.1|CP013288.1	GCA_001454905.1_CP013288.1	GCA_001454905.1|CP013288.1	GCA_001454905_1_1	GCA_001454905_1_1@C39	1583	2044	GCA_001454905_1_1_622	GCA_001454905_1_1_622	-	2950820	.	PDB:3DTE_A	IrrE-protein	MILLYEKLVNKYQDEVTIREEKMPYKLPGLYLNGTIFISKDQSSIEKGCVLVEELMHYKYTVGNITKQETIMDKKQEIFARRKGYEELIPLDDIIACFYLGLREYFEVAEFLEVTEEFLRHTVTHYAEKYGPMYDYGGYFINFGNSIDVYKKF*	common_virus_hmm	common_virus	C39	12311	615567	627878	GCA_001454905.1|CP013288.1@region_615568_627878@tool_cenote_CDS_0003	persistent	direct	high	461	0.998	GCA_001454905.1_00632
GCA_001454905.1|CP013288.1@region_615568_627878@tool_cenote	cenote	CDS	617607	617942	GCA_001454905.1	CP013288.1	GCA_001454905.1|CP013288.1	GCA_001454905.1_CP013288.1	GCA_001454905.1|CP013288.1	GCA_001454905_1_1	GCA_001454905_1_1@C39	2041	2376	GCA_001454905_1_1_623	GCA_001454905_1_1_623	-	2950820	.	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain  [Transcription]. 	MELNKFVGNKIKQYREERGLNQEALAEKLHTTRQTISRYENGDRKANQDVLFELAKIFNKRLDDFFPERNLPPVDERLVTIAAHIDDDVTEEEMRDILAYIEMKKKLHRGM*	mmseqs_cdd	nonviral_gene	C39	12311	615567	627878	GCA_001454905.1|CP013288.1@region_615568_627878@tool_cenote_CDS_0004	persistent	direct	high	335	0.997	GCA_001454905.1_00633
GCA_001454905.1|CP013288.1@region_615568_627878@tool_cenote	cenote	CDS	618159	618587	GCA_001454905.1	CP013288.1	GCA_001454905.1|CP013288.1	GCA_001454905.1_CP013288.1	GCA_001454905.1|CP013288.1	GCA_001454905_1_1	GCA_001454905_1_1@C39	2593	3021	GCA_001454905_1_1_624	GCA_001454905_1_1_624	+	2950820	.	PF10654.9	Protein of unknown function (DUF2481)	MDRKLLKEKQIQLIFQLEQEENRFIRKRLIEELEFFEALGDREKGLLTAEQKLLILTPSEYREYKRTKSDVQISRLIGVSRSSLAEWKRKKGLNRKKPQPVQQEMIDVLAFHLDKTKDEIGALPASAIECQYEAFVINEAHN*	hhsuite_tools	hypothetical_protein	C39	12311	615567	627878	GCA_001454905.1|CP013288.1@region_615568_627878@tool_cenote_CDS_0005	persistent	direct	high	428	0.998	GCA_001454905.1_00634
GCA_001454905.1|CP013288.1@region_615568_627878@tool_cenote	cenote	CDS	618599	619015	GCA_001454905.1	CP013288.1	GCA_001454905.1|CP013288.1	GCA_001454905.1_CP013288.1	GCA_001454905.1|CP013288.1	GCA_001454905_1_1	GCA_001454905_1_1@C39	3033	3449	GCA_001454905_1_1_625	GCA_001454905_1_1_625	+	2950820	.	TIGR01637	phage transcriptional regulator, ArpU family. This model represents a family of phage proteins, including ArpU, called a putative autolysin regulatory protein. ArpU was described as a regulator of cellular muramidase-2 of Enterococcus hirae but appears to have been cloned from a prophage. This family appears related to the RinA family of bacteriophage transcriptional activators and to some sporulation-specific sigma factors. We propose that this is a phage transcriptional activator family. [Mobile and extrachromosomal element functions, Prophage functions, Regulatory functions, DNA interactions]	MQVLVLPENKDINYIKTVQEVKRFFADLERFRMITGLSKKPHLLRNGFLEEPQFEPVAFSARYNKEVILEARWLVEKYTEMLNQMDDLYRTILMECYVERKQDVAVMMDLPYEIAQFKRIKKRAVLEIATLMGILVRK*	mmseqs_cdd	common_virus	C39	12311	615567	627878	GCA_001454905.1|CP013288.1@region_615568_627878@tool_cenote_CDS_0006	persistent	direct	high	416	0.998	GCA_001454905.1_00635
GCA_001454905.1|CP013288.1@region_615568_627878@tool_cenote	cenote	CDS	619295	619684	GCA_001454905.1	CP013288.1	GCA_001454905.1|CP013288.1	GCA_001454905.1_CP013288.1	GCA_001454905.1|CP013288.1	GCA_001454905_1_1	GCA_001454905_1_1@C39	3729	4118	GCA_001454905_1_1_626	GCA_001454905_1_1_626	+	2950820	.	PDB:4ACV_B	Antigen-protein	MKSLSFMRVLEAVRTMLQEKGGLDVSIVMRDQVEMPTTMIEMIDQEEEESQTAWKEKYRFAIHHYTNETDLAGVEMIDTLIQTGFTLPEGYKLIAVRHYGKQNLVKENTLIHAKTSFEVSICRELKVKI*	common_virus_hmm	common_virus	C39	12311	615567	627878	GCA_001454905.1|CP013288.1@region_615568_627878@tool_cenote_CDS_0007	persistent	direct	high	389	0.997	GCA_001454905.1_00636
GCA_001454905.1|CP013288.1@region_615568_627878@tool_cenote	cenote	CDS	619697	620209	GCA_001454905.1	CP013288.1	GCA_001454905.1|CP013288.1	GCA_001454905.1_CP013288.1	GCA_001454905.1|CP013288.1	GCA_001454905_1_1	GCA_001454905_1_1@C39	4131	4643	GCA_001454905_1_1_627	GCA_001454905_1_1_627	+	2950820	.	PDB:5A21_H	major-tail-protein	MAFEENLYCDYTPGAAKAVAGKDVILAVFNAAGDKLLAVAGQQGLTVNRSKDSIEITSKDTVGGWKSKIGGMKEWSIENDGLYVADAESHKELAKYFESDSPVCVKIINQASKKGLFGGLAIVADYSFEAPFDEAMTYSVKLDGMGALVDLTITEGGDQMPGETPVAPAE*	hallmark_hmm	common_virus	C39	12311	615567	627878	GCA_001454905.1|CP013288.1@region_615568_627878@tool_cenote_CDS_0008	persistent	direct	high	512	0.998	GCA_001454905.1_00637
GCA_001454905.1|CP013288.1@region_615568_627878@tool_cenote	cenote	CDS	620257	620559	GCA_001454905.1	CP013288.1	GCA_001454905.1|CP013288.1	GCA_001454905.1_CP013288.1	GCA_001454905.1|CP013288.1	GCA_001454905_1_1	GCA_001454905_1_1@C39	4691	4993	GCA_001454905_1_1_628	GCA_001454905_1_1_628	+	2950820	.	PFAM:PF12363.7	tail-protein	MFEVNDTTYILRFNKQKVKTVELTSGISLVAALTANKGILSYQVIETLFVSGLVEEKGLVPVKQKEALEIFDKLVEEQGLISLNVAVIEKLQEDMGFLFR*	phrogs_hmm	hypothetical_protein	C39	12311	615567	627878	GCA_001454905.1|CP013288.1@region_615568_627878@tool_cenote_CDS_0009	persistent	direct	high	302	0.997	GCA_001454905.1_00638
GCA_001454905.1|CP013288.1@region_615568_627878@tool_cenote	cenote	CDS	620613	621005	GCA_001454905.1	CP013288.1	GCA_001454905.1|CP013288.1	GCA_001454905.1_CP013288.1	GCA_001454905.1|CP013288.1	GCA_001454905_1_1	GCA_001454905_1_1@C39	5047	5439	GCA_001454905_1_1_629	GCA_001454905_1_1_629	+	2950820	.	.	hypothetical protein	MNHDFDLEKQFAFFVVNFQMSKHDFEELTEVEKNFIMKEWENKVIFESTMLRNAVLNAEQNLNRKRNSRFIDLHKKRQKKADVNYTVNALQAISDNEAKEGKAWIDRIYGANGLRRPKNKEERGKVNGGF*	.	hypothetical_protein	C39	12311	615567	627878	GCA_001454905.1|CP013288.1@region_615568_627878@tool_cenote_CDS_0010	persistent	direct	high	393	1.0	GCA_001454905.1_00639
GCA_001454905.1|CP013288.1@region_615568_627878@tool_cenote	cenote	CDS	620992	622860	GCA_001454905.1	CP013288.1	GCA_001454905.1|CP013288.1	GCA_001454905.1_CP013288.1	GCA_001454905.1|CP013288.1	GCA_001454905_1_1	GCA_001454905_1_1@C39	5426	7294	GCA_001454905_1_1_630	GCA_001454905_1_1_630	+	2950820	.	UniProtKB:A0A0R1V141_9LACO	minor-tail-protein-	MADSKSFTFELNESVLTAQVGRLDEMAMVVERRFSELKMTIEDVGNADPGSKISESLGGLQSGLGTISSAFGQLGSSSEAITSGFGTAVGSVGGITDAFKNLGSSVQNGTLFSSLATGIGGMSTMLGGVSGGVQGITNLASGFMELKKHLGGLMSSIGGVGGIMGKLTSPMGLVIIGIVALVAAFAYLMTTNESFRNTVMSVVTQVAQLFGQLVASLMPIIMQIVTAVMQIGAALMPMVMQFISFFAQLLAQLMPFINMLISMLMPVIMQIVQVVMSLVSALLPSIMTVIQGIMSVIQFLIPIIMQIATVVVQIVVTIISYISKIMPIVMTIIGVIVSIITTIISYVVIIATTIASVIGKIISFIASVITAVIGIVQPIIGFITNIFTTIVTIIGAAFQMVFTVASKIWNAIMTTISGIIEGIKAVITGISTTVSSVFNGVKRIITGVFDGIKSAWGGLTDFVGNIFDGVSSAIQTVVDNVKGFVNVVIRGINGAIGLINKIPGVEIGKIPQLISGTTNFQGGFARMNEGGRGEMVVLPSGSQVIPHDATMKYARESARGNKSMLYTSQGADLARVENLLERLLQKNPVIKMDDKVVAEVVSRNQANSFDQYNYTMGGAAYS*	hallmark_hmm	common_virus	C39	12311	615567	627878	GCA_001454905.1|CP013288.1@region_615568_627878@tool_cenote_CDS_0011	persistent	direct	high	1868	0.999	GCA_001454905.1_00640
GCA_001454905.1|CP013288.1@region_615568_627878@tool_cenote	cenote	CDS	622857	623675	GCA_001454905.1	CP013288.1	GCA_001454905.1|CP013288.1	GCA_001454905.1_CP013288.1	GCA_001454905.1|CP013288.1	GCA_001454905_1_1	GCA_001454905_1_1@C39	7291	8109	GCA_001454905_1_1_631	GCA_001454905_1_1_631	+	2950820	.	PDB:2X8K_A	Distal-Tail-Protein	MSDLFLELNGKVHSLSETFPGLSVQEVSRQSPQLSMETAEIAGTDGVIPGMTQFKPFIFSAKCNLQALDIPDYHLAVREIYEFLFQRDSYYIWSDQMPGIRYEVHPKPVDFSRESDRVGLLTIEFDVFKGYAESRGTSLDPMTFEVDLWQMGMNLSNRDDLFYIFKENTFRVYNAGSDRVNPLMRHELDIAMTANGTPTIHNLTTGESFEYRKELQKTDVLLLNNIYPLVNNRRVGKDTNHGIITLEKGWNDFEIKGVTDVTIAFNFPFIYR*	hallmark_hmm	common_virus	C39	12311	615567	627878	GCA_001454905.1|CP013288.1@region_615568_627878@tool_cenote_CDS_0012	persistent	direct	high	818	0.999	GCA_001454905.1_00641
GCA_001454905.1|CP013288.1@region_615568_627878@tool_cenote	cenote	CDS	623685	624821	GCA_001454905.1	CP013288.1	GCA_001454905.1|CP013288.1	GCA_001454905.1_CP013288.1	GCA_001454905.1|CP013288.1	GCA_001454905_1_1	GCA_001454905_1_1@C39	8119	9255	GCA_001454905_1_1_632	GCA_001454905_1_1_632	+	2950820	.	PDB:3GS9_A	tail-protein-	MDYVIIQSMDKEVEEILTDIDYGSFSYDYEKNTSRAISFTVNKTKQNAAIFDLVGNEAILTYQGQQFVIKKCTPKSIGGTISKQITAQHICYTVQDHVQYNVKSGRKKYSIQTVLEFALQDNVLGFSYEIQGSFPLVELEDLGNKNGLELVNLCLEEFGAILFADNKKLYFYDEKSWYVRTEKQFRYLYNTEEVSVDTNTDNLKTEIKCYGKQKENADKLTGDNKYMAVVTYTSPNEAIYGKRMANAKSDDKITNNDDLLIFAKKQILDVPETALTISYKGKEPVSERDVWYFIHEPMGFETEVKVTKIKSSHPWSKKFQEIGFSNSRRDMVRIQTQIANQVKKASVDTNKINSFSSIAMNAYDSRILTEVVGVVDGD*	hallmark_hmm	common_virus	C39	12311	615567	627878	GCA_001454905.1|CP013288.1@region_615568_627878@tool_cenote_CDS_0013	persistent	direct	high	1136	0.999	GCA_001454905.1_00642
GCA_001454905.1|CP013288.1@region_615568_627878@tool_cenote	cenote	CDS	624811	625110	GCA_001454905.1	CP013288.1	GCA_001454905.1|CP013288.1	GCA_001454905.1_CP013288.1	GCA_001454905.1|CP013288.1	GCA_001454905_1_1	GCA_001454905_1_1@C39	9245	9544	GCA_001454905_1_1_633	GCA_001454905_1_1_633	+	2950820	.	.	hypothetical protein	MATEIRVLKNVDDTVFYPKTHVTAVEGLDSATTTTSGLMPASDKTKLNGIEANAEKNNVTAIDIANWNKKQDAILVSENGSNFKITVTNAGELKATKVE*	.	hypothetical_protein	C39	12311	615567	627878	GCA_001454905.1|CP013288.1@region_615568_627878@tool_cenote_CDS_0014	persistent	direct	high	299	0.997	GCA_001454905.1_00643
GCA_001454905.1|CP013288.1@region_615568_627878@tool_cenote	cenote	CDS	625125	625700	GCA_001454905.1	CP013288.1	GCA_001454905.1|CP013288.1	GCA_001454905.1_CP013288.1	GCA_001454905.1|CP013288.1	GCA_001454905_1_1	GCA_001454905_1_1@C39	9559	10134	GCA_001454905_1_1_634	GCA_001454905_1_1_634	+	2950820	.	PFAM:PF07602.10	tail-protein	MKLDLWKWEMLLQGREFRNKTNDNWQKLMDWSDFISTGLSAIYVYVNKADATLNNKIDTVDKAVNARVNELISGTEQLSEVVDARVDAFGARYPVLRERLNQEQLIYNKKSTVQFDVNTIINMEKQDIGLLTSKTISEAQTVCFLNISSLNEDADIVLEKTGETSFSENLTSLVFAKIGTNERYQMEPVGA*	phrogs_hmm	hypothetical_protein	C39	12311	615567	627878	GCA_001454905.1|CP013288.1@region_615568_627878@tool_cenote_CDS_0015	persistent	direct	high	575	0.998	GCA_001454905.1_00644
GCA_001454905.1|CP013288.1@region_615568_627878@tool_cenote	cenote	CDS	625715	626194	GCA_001454905.1	CP013288.1	GCA_001454905.1|CP013288.1	GCA_001454905.1_CP013288.1	GCA_001454905.1|CP013288.1	GCA_001454905_1_1	GCA_001454905_1_1@C39	10149	10628	GCA_001454905_1_1_635	GCA_001454905_1_1_635	+	2950820	.	.	hypothetical protein	MTEIKRMLQTKEDNSKEQFYPETHVAGIVGLTEYVSGQLPTGVVSVNGKAGRVLLDAEDVHAAKKSHNHEVATYTTDGFMSSFDKQKIDQLVSPEAGVTSINGKTGIVDLFAADLDAAEINHTHAEATTTESGFLAKEDKEKLDAMQIIALETIKEVIE*	.	hypothetical_protein	C39	12311	615567	627878	GCA_001454905.1|CP013288.1@region_615568_627878@tool_cenote_CDS_0016	persistent	direct	high	479	0.998	GCA_001454905.1_00645
GCA_001454905.1|CP013288.1@region_615568_627878@tool_cenote	cenote	CDS	626191	626727	GCA_001454905.1	CP013288.1	GCA_001454905.1|CP013288.1	GCA_001454905.1_CP013288.1	GCA_001454905.1|CP013288.1	GCA_001454905_1_1	GCA_001454905_1_1@C39	10625	11161	GCA_001454905_1_1_636	GCA_001454905_1_1_636	+	2950820	.	6R5W_A	Gp15 protein	MTKIVKMSEKNEHGTLEQFYPETHAEAVKGLVSVSEEEKATWNEKETTAGAEQKANTALNSAKDYVDTIGKGTVIFKGANIMAAGQKYTWNSSKLKFGITLLFSRYDSANNTPLDYYYHSVFLSKAQLAELAGKGLLVPMPSATYGERKYLYVSETEVAGHNDNTNNASWALRQLTVM*	hhsuite_tools	hypothetical_protein	C39	12311	615567	627878	GCA_001454905.1|CP013288.1@region_615568_627878@tool_cenote_CDS_0017	persistent	direct	high	536	0.998	GCA_001454905.1_00646
GCA_001454905.1|CP013288.1@region_615568_627878@tool_cenote	cenote	CDS	626746	627168	GCA_001454905.1	CP013288.1	GCA_001454905.1|CP013288.1	GCA_001454905.1_CP013288.1	GCA_001454905.1|CP013288.1	GCA_001454905_1_1	GCA_001454905_1_1@C39	11180	11602	GCA_001454905_1_1_637	GCA_001454905_1_1_637	+	2950820	.	PFAM:PF05105.11	Bacteriophage-holin	MEVILKIGILGFGAIFGYLFGEVDLLVKVLVCFIVADYISGLLASGYLGELSSKMGFKGIAKKIAILILVAIAHQIDLILGTHNTTRDAVIFFYLANELISILENFVRMGMKVPEVLKNLILIFDSKSGDEEEKHDKDMD*	common_virus_hmm	common_virus	C39	12311	615567	627878	GCA_001454905.1|CP013288.1@region_615568_627878@tool_cenote_CDS_0018	persistent	direct	high	422	0.998	GCA_001454905.1_00647
GCA_001454905.1|CP013288.1@region_615568_627878@tool_cenote	cenote	CDS	627149	627877	GCA_001454905.1	CP013288.1	GCA_001454905.1|CP013288.1	GCA_001454905.1_CP013288.1	GCA_001454905.1|CP013288.1	GCA_001454905_1_1	GCA_001454905_1_1@C39	11583	12311	GCA_001454905_1_1_638	GCA_001454905_1_1_638	+	2950820	.	PDB:5EMI_A	Cell-wall-hydrolase-autolysin	MTKIWIDAGHGGKDPGASGNGLVEKNWVLATAKQLQIELVKAGFEVGMTRTNDTFLELRERAKKANSFKANLFISLHFNAGGGKGYEDYIYTSVPAKTVEIQKIIHKNIIAKVTKHGMNDRGMKKANFAVLRETAMDAILLEAGFCDSTDALILEKKAYQTDYCLGIVAAVQEIFGAMVTKYRAGKYLTSDDAISGTNIKGYLEAGTKVFVYKETEKTLNLTTTKGVPGSWVLKTEVNTGKR*	common_virus_hmm	common_virus	C39	12311	615567	627878	GCA_001454905.1|CP013288.1@region_615568_627878@tool_cenote_CDS_0019	persistent	direct	high	728	0.999	GCA_001454905.1_00648