core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_001547835.1|AP014585.1@region_447015_455610@tool_cenote	cenote	CDS	447014	447190	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C38	1	177	GCA_001547835_1_1_437	GCA_001547835_1_1_437	+	1744827	.	PFAM:PF03354.15	Large-Terminase	MGQNVVMRQAPGGNIKPDKEKSVEKIDGIVGLILGLDRCICRQGDEASVYDERGILSF*	hallmark_hmm	common_virus	C38	8596	447014	455610	GCA_001547835.1|AP014585.1@region_447015_455610@tool_cenote_CDS_0001	persistent	direct	moderate	158	0.893	GCA_001547835.1_00492
GCA_001547835.1|AP014585.1@region_447015_455610@tool_cenote	cenote	CDS	447245	447547	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C38	232	534	GCA_001547835_1_1_438	GCA_001547835_1_1_438	+	1744827	.	COG3077	Antitoxin component of the RelBE or YafQ-DinJ toxin-antitoxin module [Defense mechanisms]. 	MAKTGTLNLRVDDSVKSAADDILKRLGIPMSTAIDMFLNQIILTGGIPFDVSLPEAPQRVNVDYMSQEKFYDKLITSFEDAKTGNRQDVREFLFQLKENA*	mmseqs_cdd	nonviral_gene	C38	8596	447014	455610	GCA_001547835.1|AP014585.1@region_447015_455610@tool_cenote_CDS_0002	persistent	direct	high	302	0.997	GCA_001547835.1_00493
GCA_001547835.1|AP014585.1@region_447015_455610@tool_cenote	cenote	CDS	447547	447852	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C38	534	839	GCA_001547835_1_1_439	GCA_001547835_1_1_439	+	1744827	.	COG3668	Plasmid stabilization system protein ParE [Mobilome: prophages, transposons]. 	MKEYQVTMSDDAKADLLSIYHYVRDELCAPQAADDLLERLSQGMLSLSIFPERCAIIEDLIGKGYTFRQLIVKKYRIVYHVLEDEVIIVAVVYGSRHMNNW*	mmseqs_cdd	nonviral_gene	C38	8596	447014	455610	GCA_001547835.1|AP014585.1@region_447015_455610@tool_cenote_CDS_0003	persistent	direct	high	305	0.997	GCA_001547835.1_00494
GCA_001547835.1|AP014585.1@region_447015_455610@tool_cenote	cenote	CDS	447871	448143	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C38	858	1130	GCA_001547835_1_1_440	GCA_001547835_1_1_440	+	1744827	.	PFAM:PF04014.17	transcriptional-regulator	MELVKTIQIGDDIYPPIPDLFGIQENQEFNLYKSTDGTLVLSPSDSKLSADHQSISSDEQMTTAVEQARLDEIATSVLSRHLDAFKELTE*	phrogs_hmm	hypothetical_protein	C38	8596	447014	455610	GCA_001547835.1|AP014585.1@region_447015_455610@tool_cenote_CDS_0004	persistent	direct	high	272	0.996	GCA_001547835.1_00495
GCA_001547835.1|AP014585.1@region_447015_455610@tool_cenote	cenote	CDS	448248	448700	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C38	1235	1687	GCA_001547835_1_1_441	GCA_001547835_1_1_441	+	1744827	.	CDD:COG4695	Portal-protein	MGLLDLIGRKRARDKPQNSYEGQDFSYLFGRTTSGENVDEFKTMQTTAVYACVRVLAEAVASLPIHIYERTENGKEKKLDHPLYFLLHDEPNPEMSSFIFRETIMSHLLIWGNAYVQIIRDKSGMVSLLLKQKASVLIRKLLLIIWQRMP*	hallmark_hmm	common_virus	C38	8596	447014	455610	GCA_001547835.1|AP014585.1@region_447015_455610@tool_cenote_CDS_0005	shell	direct	high	452	0.998	GCA_001547835.1_00496
GCA_001547835.1|AP014585.1@region_447015_455610@tool_cenote	cenote	CDS	448766	449080	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C38	1753	2067	GCA_001547835_1_1_442	GCA_001547835_1_1_442	+	1744827	.	.	hypothetical protein	MPRLISQQILSEYVKSLEVEADKVVIPGQNTPVFSWDRDGNGNLSIDTPLLKVRGESLATQADLTTISLTPGPKGELWQTSVERLDIKVDKHISLTFKNGVRID*	.	hypothetical_protein	C38	8596	447014	455610	GCA_001547835.1|AP014585.1@region_447015_455610@tool_cenote_CDS_0006	persistent	direct	high	314	0.997	GCA_001547835.1_00497
GCA_001547835.1|AP014585.1@region_447015_455610@tool_cenote	cenote	CDS	449497	449835	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C38	2484	2822	GCA_001547835_1_1_443	GCA_001547835_1_1_443	+	1744827	.	4RGL_A	Filamentation induced by cAMP protein	MKPPFTVTNTMLNKVVEISKIIGNLELQVQKDLKLRKENRIQSIHSSLAIEQNSLTVEQITAIIDGKRVLGNPREIREVKNAYEAYEEILTLTPYDESHFFKMKKFQQYIYR*	hhsuite_tools	hypothetical_protein	C38	8596	447014	455610	GCA_001547835.1|AP014585.1@region_447015_455610@tool_cenote_CDS_0007	persistent	direct	high	338	0.997	GCA_001547835.1_00498
GCA_001547835.1|AP014585.1@region_447015_455610@tool_cenote	cenote	CDS	449859	450683	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C38	2846	3670	GCA_001547835_1_1_444	GCA_001547835_1_1_444	+	1744827	.	PRK06462	asparagine synthetase A; Reviewed	MGLGSDSLPVKISLFDVDTYLADSMQFHLEYILRLFPKSGVHYLMPTFRGEAVDHRHLSQFYHSECEIEGDLHYVMNLVDRYIKFLVSEILRECRDSIFAITKDVSHLESFIDRKIPIITFEEACTILENEIDSLEYNDEHHFYVLTDVGEKKLMEHFEGVVWVKNYPCKSVPFYQRFSTDHLFAYNADLLLGIGETVGCGERCETYEEVVENMNYLQVDASEYSWYLEMKKTRPMKSSGFGLGVERLIAWILKCDDVRKVQLISRENGIDYLP*	mmseqs_cdd	nonviral_gene	C38	8596	447014	455610	GCA_001547835.1|AP014585.1@region_447015_455610@tool_cenote_CDS_0008	persistent	direct	high	824	0.999	GCA_001547835.1_00499
GCA_001547835.1|AP014585.1@region_447015_455610@tool_cenote	cenote	CDS	450697	451944	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C38	3684	4931	GCA_001547835_1_1_445	GCA_001547835_1_1_445	+	1744827	.	COG0439	Biotin carboxylase [Lipid transport and metabolism]. 	MKKNILIVGGGPEITICYDLINNSTEYNFFSVSEIPTMYPELFVETIETSFRNFGKTIEQIKELKYSIDAVACWDEALTHIADDISKELGLNPISSLDSQSFRFKDRMRMVCEAGGLKMPKYKIINQFSDTNKIINWKYPLIVKPTSFLASIGVKKVYNFSELQQAVSQMLNVKFPVYIASGVYELGELYNLEPRVLVEEFIDGEEYSLESVVRNGIYTPLGITKKIVDEKLFMDEIGHIFPSNLNKEEKSRVYSWAEKLHQILQLNHITTHTEFRIGRNGDIILIEIGARIGGDCIPNLMKNSFIVKGFDFYNTYLKARLGLQEELNTDTNKFSGIVFFRLNPENYGKIFNGVSYDAPKTSLIFEEKIYKKEGTVLPNPINWSNERVGYVCLENKEYAVLEKEMKEILKSLSIE*	mmseqs_cdd	nonviral_gene	C38	8596	447014	455610	GCA_001547835.1|AP014585.1@region_447015_455610@tool_cenote_CDS_0009	persistent	direct	high	1247	0.999	GCA_001547835.1_00500
GCA_001547835.1|AP014585.1@region_447015_455610@tool_cenote	cenote	CDS	452172	452888	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C38	5159	5875	GCA_001547835_1_1_446	GCA_001547835_1_1_446	+	1744827	.	cd07062	Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported.  It is suggested that MccF is involved in microcin degradation or sequestration in the periplasm.	MTSIGGYNSNSVLKYIDYDLFKQKSPIFIGYSDTTALALALYKKTGCITYLSQSVISNFGEFEPFNELNYFYFDFMLQSKCETLMVQIPDVWTDEWINWETYERTKKTNKNEWIIFNKGEFNGTLIGGNLDTIVGIIGTEYMPKITEDTILLLEDVYTDLGRLYRNFTTLALHGIFDKIGGLIISKFETIGENSDVINDIINEFVGHRKIPILLNFDCGHTHPSCLMPIGGKITLSLS*	mmseqs_cdd	nonviral_gene	C38	8596	447014	455610	GCA_001547835.1|AP014585.1@region_447015_455610@tool_cenote_CDS_0010	shell	direct	high	716	0.999	GCA_001547835.1_00501
GCA_001547835.1|AP014585.1@region_447015_455610@tool_cenote	cenote	CDS	452901	453101	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C38	5888	6088	GCA_001547835_1_1_447	GCA_001547835_1_1_447	+	1744827	.	.	hypothetical protein	MNNRESKLTGFYDVFEEEVEKINHIHNVFVEESEKFGFQQMKIAMVEHRKKYLDATDVHYTKYKNI*	.	hypothetical_protein	C38	8596	447014	455610	GCA_001547835.1|AP014585.1@region_447015_455610@tool_cenote_CDS_0011	shell	direct	high	200	0.995	GCA_001547835.1_00502
GCA_001547835.1|AP014585.1@region_447015_455610@tool_cenote	cenote	CDS	453221	454120	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C38	6208	7107	GCA_001547835_1_1_448	GCA_001547835_1_1_448	+	1744827	.	3OD1_A	ATP phosphoribosyltransferase regulatory subunit	MLFRDRIPTYKGYRRQFNQILLGAWGIESAYVDAEIIVATWRGLQRFKGIKVEFIQLSNKNIFDVLEKDLSKKLRFEDISIEAILGKYLCNNDIEIIKCLYEKDKINMELLISLISKISNKLVKQEFIKVLVLYEYVKNFLPVDCIYFSLSNLYGTGHYSSMNYKIFIRTKSGDIFDIADGGRIDDMVSKFNKVNVLGVCMGIGTTVLSQEIEYEIEDRIMILVEKIDVKIYKNCLELANKLSGYHCSVFEFPYKKIKKFFKHELYSRHHYIIVRLDGSMEYRFSSVALKNKIKSILDS*	hhsuite_tools	hypothetical_protein	C38	8596	447014	455610	GCA_001547835.1|AP014585.1@region_447015_455610@tool_cenote_CDS_0012	shell	direct	high	899	0.999	GCA_001547835.1_00503
GCA_001547835.1|AP014585.1@region_447015_455610@tool_cenote	cenote	CDS	454573	455286	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C38	7560	8273	GCA_001547835_1_1_449	GCA_001547835_1_1_449	-	1744827	.	PDB:4U7B_B	Mos-transposase	MYRVLRVNRSTYYKFLKHKPSKRELDNQIYRKQILEIYTKANKRLGVKSIKVILQRDYDTKISEGRIYRLMKNMALPKMATVKPKTALKRTQKTYPQNLLNQKFNPDKPNQVWSTDFTYISIGYKKYVYLCAILDLYSRKCIAWKLSHRMDAKLACDTLELALNKRKIEGTLLFHSDQGSQFKARELRKIIDDNTIMHSFSKPGYPYDNAVTEAFFKYLKHRQINQKKYQTGSIRLL*	common_virus_hmm	common_virus	C38	8596	447014	455610	GCA_001547835.1|AP014585.1@region_447015_455610@tool_cenote_CDS_0013	persistent	direct	high	713	0.999	GCA_001547835.1_00504
GCA_001547835.1|AP014585.1@region_447015_455610@tool_cenote	cenote	CDS	455334	455609	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C38	8321	8596	GCA_001547835_1_1_450	GCA_001547835_1_1_450	-	1744827	.	PDB:4U7B_B	Mos-transposase	MSTVKRYDEEFKQSLVNLYQTGKTRSELCKDYGVSASALAKWIKQYSQVKLEDNSVLTAKQIQELQKRNAQLEEENLILKKASAIFMQNLK*	common_virus_hmm	common_virus	C38	8596	447014	455610	GCA_001547835.1|AP014585.1@region_447015_455610@tool_cenote_CDS_0014	persistent	direct	high	275	0.996	GCA_001547835.1_00505
GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote	cenote	CDS	1111080	1111262	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C76	1	183	GCA_001547835_1_1_1083	GCA_001547835_1_1_1083	-	1744827	.	cd19959	Streptococcus prophage gene product paratox and similar proteins. Paratox (Prx), the product of a Streptococcus prophage gene, binds to the competence regulator ComR and prevents the ComR-XIP complex from interacting with DNA.	MLTYDEFKQAIDNGYIAGDTVAIVRKDGQIFDYVLPHEKVKNGEVVTKEKVEEVLVELSR*	mmseqs_cdd	nonviral_gene	C76	24097	1111080	1135177	GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote_CDS_0001	persistent	direct	high	182	0.995	GCA_001547835.1_01154
GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote	cenote	CDS	1111501	1112301	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C76	422	1222	GCA_001547835_1_1_1084	GCA_001547835_1_1_1084	+	1744827	.	pfam13930	DNA/RNA non-specific endonuclease. 	MSKSNRRTWQGLVVILIAILTTFTTSTVTAARKIRNFPDTTEILLGTKATETPGILPFTGSYQLVLGDLDNLQRPTFAHIQLKDQDEPNIKRKGLKFNPPGWHNYKLTDANGKTTWLMDRGHLVGYQFSGLNDEPKNLVTMTKYLNTGFSDKNPLGMLYYENRLDSWLALHPNFWLDYKVTPVYHKNELVPRQVVLQYVGIDENGDLLQIKLGSEKESVDNFGVTSVTLDNVSPLAELDYQTGMMLDSTQNEEDSNLETEEFEEAA*	mmseqs_cdd	nonviral_gene	C76	24097	1111080	1135177	GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote_CDS_0002	persistent	direct	high	800	0.999	GCA_001547835.1_01155
GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote	cenote	CDS	1112521	1113006	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C76	1442	1927	GCA_001547835_1_1_1085	GCA_001547835_1_1_1085	+	1744827	.	.	hypothetical protein	MIESSNMYSRLKKKGDFMKRSKKASLLSVIVGMALAVIPIYIVNYDNELIVLLMSIFFNGIIVSAFELIKTYDGLQEEYKKLTVDRWKNTILLAFNSLYFASILTNSLSNNLSTILSTNRSDKVSAIFLTGCSILALLPFLLHRLIKREIEIENERKKLKK*	.	hypothetical_protein	C76	24097	1111080	1135177	GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote_CDS_0003	persistent	direct	moderate	434	0.893	GCA_001547835.1_01156
GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote	cenote	CDS	1113076	1114281	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C76	1997	3202	GCA_001547835_1_1_1086	GCA_001547835_1_1_1086	-	1744827	.	PDB:4OLS_C	Endolysin	MTFLDKIKQGCLDGWTTYKILPSLTAAQTILESGWGKHAPHNALFGIKADSSWTGKSFDTKTQEEYQAGVVTDIVDRFRAYDSWTDSIIDHGKFLNDNPRYQAVIGETDYKKACHAIKDAGYATASGYAELLIQLIEENDLQEWDEEAIVRKEKQMISSQCREVIEFFINLVNAGVGVDKDGFAGWQCTDVPCYAAKHWFGVDLWGNAIDLLDSAAAVGWEVHRMPTDANPQTGAFFVQSVPYHQFGHTGVVIEDSDGYTMRTIEQNIDGNPDALYVGAPARFNTRDFTGVTGWFYPPYQGDIVTQPVSTEPQTSDTIVETAKTGTFTLDVAEINIRRWPSLTSEVVGSYKQGDTISFDSEGYANGYYWISYVGGSGMRNYTAIGITDKDGNIISLWGKLN*	common_virus_hmm	common_virus	C76	24097	1111080	1135177	GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote_CDS_0004	persistent	direct	high	1205	0.999	GCA_001547835.1_01157
GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote	cenote	CDS	1114278	1114388	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C76	3199	3309	GCA_001547835_1_1_1087	GCA_001547835_1_1_1087	-	1744827	.	.	hypothetical protein	MRAITRLALVIAIAILYVPISVVALIFYPFLDKEDR*	.	hypothetical_protein	C76	24097	1111080	1135177	GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote_CDS_0005	persistent	ambiguous	low	5	0.045	GCA_001547835.1_01157
GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote	cenote	CDS	1114397	1114624	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C76	3318	3545	GCA_001547835_1_1_1088	GCA_001547835_1_1_1088	-	1744827	.	PFAM:PF04531.12	Bacteriophage-holin	MINLKLRLQNKVTLMAILGAIFLLAQQLGIKLPSNIADIANTAVTLLVLLGVVTDPTTKGLSDSEQALTYHEPKQ*	common_virus_hmm	common_virus	C76	24097	1111080	1135177	GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote_CDS_0006	persistent	direct	high	227	0.996	GCA_001547835.1_01158
GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote	cenote	CDS	1114621	1114896	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C76	3542	3817	GCA_001547835_1_1_1089	GCA_001547835_1_1_1089	-	1744827	.	PFAM:PF04531.12	holin	MATELIFGVGGFILAIVTTYNIFNAKSIKHATDITLLQSEVEHLKIVTRQNARRLEEHAEQNKTLITMTEQIKNLTDDVKDLKDMMRGEIK*	phrogs_hmm	hypothetical_protein	C76	24097	1111080	1135177	GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote_CDS_0007	persistent	direct	high	275	0.996	GCA_001547835.1_01159
GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote	cenote	CDS	1114906	1115175	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C76	3827	4096	GCA_001547835_1_1_1090	GCA_001547835_1_1_1090	-	1744827	.	.	hypothetical protein	MLTSGGKIDPDIYKGMLELIEPAKKGEYQAYDVFTVVDSTKEEDGEAGEGNLVFVHVNEAFEYDKQTLEELESEAKVTVIKYADLVKQD*	.	hypothetical_protein	C76	24097	1111080	1135177	GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote_CDS_0008	persistent	direct	high	269	0.996	GCA_001547835.1_01160
GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote	cenote	CDS	1115192	1115563	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C76	4113	4484	GCA_001547835_1_1_1091	GCA_001547835_1_1_1091	-	1744827	.	UniProtKB:F8S0S2_9CAUD	tail-protein-	MNKNDTKNVTSAKPKTGGAIYSAPLGTELPKDAKSELNTKFKNLGYVSEDGVVNEDTRSSENIKAWGGDIVGAVQTEKEDKFTYKLIESLNVEVLKEVYGAVNVTGDLSGGIQIKSNSKELKS*	hallmark_hmm	common_virus	C76	24097	1111080	1135177	GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote_CDS_0009	persistent	direct	high	371	0.997	GCA_001547835.1_01161
GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote	cenote	CDS	1115575	1115910	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C76	4496	4831	GCA_001547835_1_1_1092	GCA_001547835_1_1_1092	-	1744827	.	PDB:2LFP_A	tail-completion-protein	MIEVIIKKYLDEHLDVPSFFEHQEDEPARFIILEKTSGAKQNHLLSSTFAFQSYAESLYEAALLNDKVKQVIEQLDVLPQVSGVHLNADYNFTDTATKRYRYQAVFDINHY*	hallmark_hmm	common_virus	C76	24097	1111080	1135177	GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote_CDS_0010	persistent	direct	high	335	0.997	GCA_001547835.1_01162
GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote	cenote	CDS	1115911	1116147	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C76	4832	5068	GCA_001547835_1_1_1093	GCA_001547835_1_1_1093	-	1744827	.	Uniprot:A0A0C5ADH8_9CAUD	type-I-neck-protein	MSKFKFKLNRAGVAELMKSSEMQQVLTTKATAIRERCGDGYVQDIHVGKNRANAMVSTKTIKAKKDNSKNNTLLKAVR*	hallmark_hmm	common_virus	C76	24097	1111080	1135177	GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote_CDS_0011	persistent	direct	high	236	0.996	GCA_001547835.1_01163
GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote	cenote	CDS	1116140	1116478	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C76	5061	5399	GCA_001547835_1_1_1094	GCA_001547835_1_1_1094	-	1744827	.	PFAM:PF10665.8	Minor-capsid-protein	MAKLKGITVALADKSISGKDPFGNPVTVDFDIKIENVLVAPATTEDITNQLSLTGKKVEYVLAIPKGDEHDWENKEVRFFGKKWRTVGIPLEGIEELIPLDWNKKVMVERYE*	hallmark_hmm	common_virus	C76	24097	1111080	1135177	GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote_CDS_0012	persistent	direct	high	338	0.997	GCA_001547835.1_01164
GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote	cenote	CDS	1116438	1116860	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C76	5359	5781	GCA_001547835_1_1_1095	GCA_001547835_1_1_1095	-	1744827	.	PFAM:PF09355.9	head-to-tail-adaptor	MGNFATTDDVILLWRPLSVDELKRANALLKVVSDTLRMEADKVGKDLDKTMVDKPYFVNVIKSVTVDIVARTLMTSTRGEPMAQESQSALGYTWSGTYLVPGGGLFIKDSELKRLGLKKQRYGGIELYGEIERDNSCFSR*	hallmark_hmm	common_virus	C76	24097	1111080	1135177	GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote_CDS_0013	persistent	direct	high	422	0.998	GCA_001547835.1_01165
GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote	cenote	CDS	1116870	1117070	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C76	5791	5991	GCA_001547835_1_1_1096	GCA_001547835_1_1_1096	-	1744827	.	PFAM:PF08198.10	Arc-like-repressor	MLYVNSKTGASFYSSVPVCGGDWTLVEQQTGEKAKTVAEIKRQLDAAGIKYSSKAKKPELEALLPG*	phrogs_hmm	hypothetical_protein	C76	24097	1111080	1135177	GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote_CDS_0014	persistent	direct	high	200	0.995	GCA_001547835.1_01166
GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote	cenote	CDS	1117070	1117981	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C76	5991	6902	GCA_001547835_1_1_1097	GCA_001547835_1_1_1097	-	1744827	.	PDB:3JB5_B	Major-Capsid-protein	MGTETSKASLFDKHLVSDLINKVKGHSSLAKLSSQKPIPFNGSKEFTFTLDSDIDVVAENGKKTHGGLSLEPVTIVPIKVEYGARLSDEFLYATEEEKIDILKAFNEGFAKKLARGIDLMAMHGINPRTKKASDVIGTNHFDSKVTQVVKFTESEDADANIEAAVNLIQGSEGVVTGLAMDTEFSTALAKVTNGEMGPKMYPELAWGANPDSINGLKSSVNTTVGAGADEAESKDLVIIGDFESMFKWGYAKQIPMEIIKYGDPDNSGKDLKGYNQIYLRAEAYIGWGILDAKSFARVTKGEV*	hallmark_hmm	common_virus	C76	24097	1111080	1135177	GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote_CDS_0015	persistent	direct	high	911	0.999	GCA_001547835.1_01167
GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote	cenote	CDS	1118006	1118467	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C76	6927	7388	GCA_001547835_1_1_1098	GCA_001547835_1_1_1098	-	1744827	.	PDB:6B0X_d	Major-Capsid-protein	MSEFKVIETQEELDTIVKARIAREREKYQDYDQLKTRVEELETENSSLQTALNDAKSNTDSYTEEISTLKNQIADYEAANLRTKVALQYGLPIDLADRLQGDDEDGLKVDAERLASFIKPSQPQPPAKSNEPNIDSNADANYRALVQGLSTED*	hallmark_hmm	common_virus	C76	24097	1111080	1135177	GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote_CDS_0016	persistent	direct	high	461	0.998	GCA_001547835.1_01168
GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote	cenote	CDS	1118548	1119393	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C76	7469	8314	GCA_001547835_1_1_1099	GCA_001547835_1_1_1099	-	1744827	.	PFAM:PF03354.14	Large-Terminase	MTIMCGTPPTMVSTGTVFEAYRKDCLKGNKRYSGWAEWSVPEMVKINDVSSWYISNPSMGFHLNERKIEAELGEDEIDHNIQRLGYWPSFNQKSVISEKEWAKLKVEQVPELKSKLFVGIKFGQDGNNVSLSIAARTSENKVFVETIDCLSVRNGTQWIINFLKSADIAKVVIDGASGQELLAQEMKDQGLKKPELPKVAEIITANMMWEQGIMQETICHSDQPSLTAVVTNCEKRQIGSNGGFGYKSLYDDRDISLMDSALLAHWICYTTKPKRKQRTSC*	hallmark_hmm	common_virus	C76	24097	1111080	1135177	GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote_CDS_0017	persistent	direct	moderate	816	0.965	GCA_001547835.1_01169
GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote	cenote	CDS	1119552	1119860	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C76	8473	8781	GCA_001547835_1_1_1100	GCA_001547835_1_1_1100	-	1744827	.	PDB:2JES_G	Portal-Protein	MNYMGMGYLRRKLALFKTGVDKRYRYYAMDDRDDTRSIVMPNNVREMYRSVLEWTAKGVDSLADRIIFREFTNDDFNAWEIFKANKTLYKTLYQIKPRVKSV*	hallmark_hmm	common_virus	C76	24097	1111080	1135177	GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote_CDS_0018	persistent	direct	high	308	0.997	GCA_001547835.1_01170
GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote	cenote	CDS	1119934	1120212	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C76	8855	9133	GCA_001547835_1_1_1101	GCA_001547835_1_1_1101	-	1744827	.	PFAM:PF05766.11	HNH-endonuclease	MKKKCLICKKNFQAKTNRTLYCSEECRKKGNREKQRKLMKQKRAEQRKEKKKVLNPNTDVTEKPKKIRNLAQHYKKLKRKFWQMNLNLVLLE*	phrogs_hmm	hypothetical_protein	C76	24097	1111080	1135177	GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote_CDS_0019	persistent	direct	high	278	0.996	GCA_001547835.1_01171
GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote	cenote	CDS	1120361	1120705	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C76	9282	9626	GCA_001547835_1_1_1102	GCA_001547835_1_1_1102	-	1744827	.	PFAM:PF05766.11	HNH-endonuclease	MSQLRADKKGTHRVAFDRNKKKLLKAATVCGICGKPVDKSLKYPHPLSAAIDHIVPIAKGGHPSALENLQLTHWQCNRQKSDKLFANQASNEPKTIGNRNLPQSRDWSSFAFKK*	phrogs_hmm	hypothetical_protein	C76	24097	1111080	1135177	GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote_CDS_0020	.	unmatched_CDS	none	0	0	.
GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote	cenote	CDS	1120814	1121233	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C76	9735	10154	GCA_001547835_1_1_1103	GCA_001547835_1_1_1103	-	1744827	.	pfam07374	Protein of unknown function (DUF1492). This family consists of several hypothetical, highly conserved Streptococcal and related phage proteins of around 100 residues in length. The function of this family is unknown. It appears to be distantly related to pfam08281.	MSKAKAILKDLRNLDLYIASLIRRRDKIEASLLSSPKWSSDKVNGGIKRKQDDVYVELIATAKDIEKKTAEAIRKQRELQNLIDSLENTDSQTILSMVYIDKMTRWQVIDELNCSESTYFRLLRVATKELNNLTVNDSD*	mmseqs_cdd	common_virus	C76	24097	1111080	1135177	GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote_CDS_0021	persistent	direct	high	419	0.998	GCA_001547835.1_01172
GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote	cenote	CDS	1121501	1122133	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C76	10422	11054	GCA_001547835_1_1_1104	GCA_001547835_1_1_1104	-	1744827	.	PFAM:PF02384.15	DNA-methyltransferase	MIKIDEIHRILGIDEVYKAPKRLTDILFDKDSREDIFRQFLKYETDVSYDWFMQYFEEEQADRKNKKQDFTPKSVSTLLSKIISGNQYYEVAVGTGGILIQAWQEQRLNDSPFHYRCTNSYHVEELSDKAVPFLLFNMSIRGINGVVVHGDSLTRQVKNIYFLQNTKDDMLSFSDINVMPRTQDIEREFNVKEWIGDGIEHIENPLIEWI*	phrogs_hmm	hypothetical_protein	C76	24097	1111080	1135177	GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote_CDS_0022	persistent	direct	high	632	0.998	GCA_001547835.1_01173
GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote	cenote	CDS	1122135	1122404	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C76	11056	11325	GCA_001547835_1_1_1105	GCA_001547835_1_1_1105	-	1744827	.	.	hypothetical protein	MTEEQMIDCLLYELVKKDKAIKKKSIIIAALTVMLIVVSGLCVSLKSYYEPQIYGLRTQLSRTQKQLKRASEQNQRQTKRIADLTNNGG*	.	hypothetical_protein	C76	24097	1111080	1135177	GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote_CDS_0023	shell	direct	high	269	0.996	GCA_001547835.1_01174
GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote	cenote	CDS	1122488	1123000	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C76	11409	11921	GCA_001547835_1_1_1106	GCA_001547835_1_1_1106	-	1744827	.	PFAM:PF02075.16	Holliday-junction-resolvase	MSNLVLSLDISTSGTGWALFKGSDLIQSGVLKHKSKSYFERGRYMASQLRLIQSRALKKYDCYFSTIAVEKNSVMGPNQQSMLKIGIVTGIILGRLIADNVVFINVSTWRKYWKFSYKDRSKKSMKLQSKIKVEQEFNKSVKDDEADAILIGSYYVNQGYLDELETHDYY*	phrogs_hmm	hypothetical_protein	C76	24097	1111080	1135177	GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote_CDS_0024	shell	direct	high	512	0.998	GCA_001547835.1_01175
GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote	cenote	CDS	1122997	1123389	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C76	11918	12310	GCA_001547835_1_1_1107	GCA_001547835_1_1_1107	-	1744827	.	.	hypothetical protein	MLTHNFRASVDFKKVKNMEQIKITGTGTALILDRVNRIFAISGSLTMQWDFISGFKKIDDEPSLDEDGELFETAYDLILAAKPKTKINLTSSYFAKEHKKDIDEIIKVFSFIEDNKRNIFETLGIRGVLE*	.	hypothetical_protein	C76	24097	1111080	1135177	GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote_CDS_0025	shell	direct	moderate	342	0.87	GCA_001547835.1_01176
GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote	cenote	CDS	1123516	1123683	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C76	12437	12604	GCA_001547835_1_1_1108	GCA_001547835_1_1_1108	-	1744827	.	.	hypothetical protein	MTKYYVSAKIANLDIGAETEAENQHMAPIAFKETYDHLLRFGSHKLIILGVEELN*	.	hypothetical_protein	C76	24097	1111080	1135177	GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote_CDS_0026	shell	direct	high	167	0.994	GCA_001547835.1_01177
GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote	cenote	CDS	1123716	1123955	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C76	12637	12876	GCA_001547835_1_1_1109	GCA_001547835_1_1_1109	-	1744827	.	PFAM:PF03837.13	RecT-protein	MANQLSTYTHKQFFNAPTIQKAFDDVWKGAGTQFAVSILSVLQGSQSLKSASNESIYAAAMKAAVLNLPIEPSLGKPIN*	common_virus_hmm	common_virus	C76	24097	1111080	1135177	GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote_CDS_0027	persistent	direct	high	239	0.996	GCA_001547835.1_01178
GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote	cenote	CDS	1123958	1124287	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C76	12879	13208	GCA_001547835_1_1_1110	GCA_001547835_1_1_1110	-	1744827	.	.	hypothetical protein	MNIKEKIVVLRNTEDGSFLKSFKNKKDVLAYNVELTDSIQLASFLPEEAYNIQKEKIDNLAETLGCDVVVIEASYDLKFIDGEDVPELTKEQKVKSMVNGMFEQVFGGE*	.	hypothetical_protein	C76	24097	1111080	1135177	GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote_CDS_0028	shell	direct	high	329	0.997	GCA_001547835.1_01179
GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote	cenote	CDS	1124343	1124549	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C76	13264	13470	GCA_001547835_1_1_1111	GCA_001547835_1_1_1111	-	1744827	.	.	hypothetical protein	MTPEQAEKAKIRAKQELETFSIYLDQAIDELGGVLTSREVFLAAGITYLGAGQTDIHAAVEGLCEQIQ*	.	hypothetical_protein	C76	24097	1111080	1135177	GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote_CDS_0029	shell	direct	high	206	0.995	GCA_001547835.1_01180
GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote	cenote	CDS	1124558	1124698	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C76	13479	13619	GCA_001547835_1_1_1112	GCA_001547835_1_1_1112	-	1744827	.	.	hypothetical protein	MTKQHRETLIWYRASHQERERLLDFGLVDKSQYMTLLRQLRKKYAI*	.	hypothetical_protein	C76	24097	1111080	1135177	GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote_CDS_0030	shell	direct	high	140	0.993	GCA_001547835.1_01181
GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote	cenote	CDS	1124695	1124928	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C76	13616	13849	GCA_001547835_1_1_1113	GCA_001547835_1_1_1113	-	1744827	.	.	hypothetical protein	MDQEIFNFFNKQIKKDFGKTASKETFAKFASYCAEGIEKNGVKPIFNWINLYAFGTGMTTAEADRLRIERYKQENVL*	.	hypothetical_protein	C76	24097	1111080	1135177	GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote_CDS_0031	shell	direct	high	233	0.996	GCA_001547835.1_01182
GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote	cenote	CDS	1124909	1125298	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C76	13830	14219	GCA_001547835_1_1_1114	GCA_001547835_1_1_1114	-	1744827	.	PFAM:PF07261.10	Replication-initiation-and-membrane-attachment	MTKKELFENFQKNWMRLLSPFEIEDIDKWIDEDNMPVEVVNEALKETVIYNAPNLRYLNRVLNNWKRQGIDTVEKVEFARLQFENKKLSQNKNQQSNVPSWSNPDYKEPDLKEFALGSMDGIEDGSGDF*	rep_hall_hmm	common_virus	C76	24097	1111080	1135177	GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote_CDS_0032	cloud	direct	high	389	0.997	GCA_001547835.1_01183
GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote	cenote	CDS	1125388	1125678	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C76	14309	14599	GCA_001547835_1_1_1115	GCA_001547835_1_1_1115	-	1744827	.	PFAM:PF07261.10	DNA-polymerase-B	MVILRNKEDWRVYPEELARRSRDSVRVVRTCLEELERVGYVRTYRKSLGRGKGIQYYRFCSDKKISEAIKKKSIIIAALTVQSCILQSCILQSCKT*	rep_hall_hmm	common_virus	C76	24097	1111080	1135177	GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote_CDS_0033	.	unmatched_CDS	none	0	0	.
GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote	cenote	CDS	1125778	1125963	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C76	14699	14884	GCA_001547835_1_1_1116	GCA_001547835_1_1_1116	-	1744827	.	.	hypothetical protein	MNKLELFLLVTTIILAIITRVQHEVIKKHNSPENKRRIFREVALENSKGWREKRSGGKVVS*	.	hypothetical_protein	C76	24097	1111080	1135177	GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote_CDS_0034	shell	direct	high	185	0.995	GCA_001547835.1_01184
GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote	cenote	CDS	1125965	1126276	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C76	14886	15197	GCA_001547835_1_1_1117	GCA_001547835_1_1_1117	-	1744827	.	PFAM:PF00292.17	excisionase	MPKAEITYRAVDVNETASHGDYKHLIQQWEGLTVATAKQWATEMRDHPDFKQFVLNPTHRIVFIDYEGFKLFVQWKSRNRYKTKKETLSEMLENIKFEKRVGA*	phrogs_hmm	hypothetical_protein	C76	24097	1111080	1135177	GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote_CDS_0035	persistent	direct	high	311	0.997	GCA_001547835.1_01185
GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote	cenote	CDS	1126354	1126539	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C76	15275	15460	GCA_001547835_1_1_1118	GCA_001547835_1_1_1118	-	1744827	.	PFAM:PF10078.8	transcriptional-regulator	MWGKIEALLIEKKMTKYELSQKAGLNQNCLIDLKKGRKKSLKFDDVVKIADVLGVSLDEFR*	phrogs_hmm	hypothetical_protein	C76	24097	1111080	1135177	GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote_CDS_0036	shell	direct	high	185	0.995	GCA_001547835.1_01186
GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote	cenote	CDS	1126706	1126945	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C76	15627	15866	GCA_001547835_1_1_1119	GCA_001547835_1_1_1119	+	1744827	.	.	hypothetical protein	MDTKEFMKVVSKHINQNFNVDNQLVEFVVAELNQMNAPITQKQAQHIVNILEYVSKSTSKSTIAAMTNALLELGVLKGD*	.	hypothetical_protein	C76	24097	1111080	1135177	GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote_CDS_0037	shell	direct	high	239	0.996	GCA_001547835.1_01187
GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote	cenote	CDS	1127087	1127893	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C76	16008	16814	GCA_001547835_1_1_1120	GCA_001547835_1_1_1120	+	1744827	.	TIGR02391	TIGR02391 family protein. This family consists of a relatively rare (~ 8 occurrences per 200 genomes) prokaryotic protein family. Genes for members are appear to be associated variously with phage and plasmid regions, restriction system loci, transposons, and housekeeping genes. The function is unknown. [Hypothetical proteins, Domain]	MLNIDTQFVDTIGKILSDYVSHSEITRMGEVLGYPQNDQNSGFNKHKRVHNLMSDILNRTQNTDNIKLVIEYVCNPLRYINEVSIFEQLRTAINIPLSLKGLIVSDSGQIVTTTTSKTLSEAKKRFETLDSRLKELKVHPHVLKFCTQELLQENYFHAVFEASKGVFHRIRLLTGSAMDSASLIDQCFKPGEPIVIINGNKLQTLDEQSEYKGLKNLLLAIAHLYRNSKAHKLKYYNPDNLNDALTALTLMSLAHNLLDSCSNTRRLD*	mmseqs_cdd	nonviral_gene	C76	24097	1111080	1135177	GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote_CDS_0038	cloud	direct	high	806	0.999	GCA_001547835.1_01188
GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote	cenote	CDS	1127828	1128094	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C76	16749	17015	GCA_001547835_1_1_1121	GCA_001547835_1_1_1121	-	1744827	.	.	hypothetical protein	MEEKKFFTTYEMDLMNSVVTLQKSILTQTEHLSDQLTKKLHHLEDYNSPIDDEAIRLAEVTAEFYKLLIKSPSVGATVKEIVSEGHKR*	.	hypothetical_protein	C76	24097	1111080	1135177	GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote_CDS_0039	cloud	direct	high	266	0.996	GCA_001547835.1_01189
GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote	cenote	CDS	1128126	1128842	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C76	17047	17763	GCA_001547835_1_1_1122	GCA_001547835_1_1_1122	-	1744827	.	PFAM:PF03374.13	KilA-protein	MNQIINITVNDNHEPVVSGRDLHKVLEIKTAYKDWFPRMAEYGFEEGQDFSSFLSKSTGGRPSQDHVLKLDMAKEIAMLQRNEKSKQVRKYFIQVEKDFNSPEKIMARALLMADKKVHKLEAQIEADRPKVLFADAVSASKSSCLIGELAKILKQNGINIGQNKLFQWLRANGYLISRRGESWNQPTQKSMQLGLFELKKTAINHSDGHTTTNVTPKVTGKGQQYFINKFLNQEYLPV*	common_virus_hmm	common_virus	C76	24097	1111080	1135177	GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote_CDS_0040	cloud	direct	high	716	0.999	GCA_001547835.1_01190
GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote	cenote	CDS	1128854	1129045	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C76	17775	17966	GCA_001547835_1_1_1123	GCA_001547835_1_1_1123	-	1744827	.	PFAM:PF10078.8	DNA-binding-protein	MPDNTIAIEKIKKYLLDNNLKQVDLAVTYGKEPQDVANILAGRKKDPASNRFVLKVISDLKIR*	phrogs_hmm	hypothetical_protein	C76	24097	1111080	1135177	GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote_CDS_0041	cloud	direct	high	191	0.995	GCA_001547835.1_01191
GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote	cenote	CDS	1130199	1130546	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C76	19120	19467	GCA_001547835_1_1_1124	GCA_001547835_1_1_1124	+	1744827	.	PDB:1PRA_A	Repressor-protein	MFITFERIKELAKKQGLSINSLEEKMGYSRNTIYALKRNKPGSEKLQEIADYFHVSTDYLLGRTDNPAIAKDNQEYTSEDLRKMAKNAKTFDGKPLTESDIEAIQNIIEIYLKGR*	common_virus_hmm	common_virus	C76	24097	1111080	1135177	GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote_CDS_0042	cloud	direct	moderate	272	0.782	GCA_001547835.1_01193
GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote	cenote	CDS	1130550	1130930	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C76	19471	19851	GCA_001547835_1_1_1125	GCA_001547835_1_1_1125	+	1744827	.	PDB:3DTE_A	IrrE-protein	MTIEEILDFHNVELAYFDNELWPRPGIYIDEIKVVFVNRALSDESKKKVIFHELGHIEHDSGQYQRRHEEFELQANRHMIRCLLEDEFDKVEDKHEFNYLSFMQRHNLKTTTDEVMVIDEYYTLIG*	common_virus_hmm	common_virus	C76	24097	1111080	1135177	GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote_CDS_0043	cloud	direct	high	380	0.997	GCA_001547835.1_01194
GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote	cenote	CDS	1130942	1131208	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C76	19863	20129	GCA_001547835_1_1_1126	GCA_001547835_1_1_1126	+	1744827	.	PF13783.6	Domain of unknown function (DUF4177)	MGFLDNVKEASTVSTASGENYEYVVLQVTLKEKLIGTGSGNLTELENVINKQAKKGYRLHTITTSNGGSKGFGGGDRIQATMVFEKIK*	hhsuite_tools	hypothetical_protein	C76	24097	1111080	1135177	GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote_CDS_0044	cloud	direct	high	266	0.996	GCA_001547835.1_01195
GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote	cenote	CDS	1131332	1132474	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C76	20253	21395	GCA_001547835_1_1_1127	GCA_001547835_1_1_1127	+	1744827	.	PDB:1Z19_B	Integrase	MWIEETDNGKFKFRENYKDPYTGTWKPVSVTMEKDNSRAYKAARKILEQKITEKIAQLKASELLFTELLDEWWAFYKKELKRSSVASLRGNIEEIRETFGIGVKVVNIDPKYVQNYLDNLDCSRNKKERNKSMLNLAFDYAVGLDIIQDNPARRAKLPRVKKTLEDWKKAEEKYLEEDEIKPLLKELYRRPSTYRLGLLAEFISLNGCRIGEAVSIEPCNYESKSRILQLHGTFDHTEGYRNGEKTAPKTLASYRETIMTSRELEILQELEFMNELEKNTNHRYRDMGYLFTTKNGVPIQTNSFNLALKKANERLEDPITKKLTSHIFRHTLISRLAENNVPLKSIMERVGHADAKTTAQIYTHVTKKMKSSVADIMENY*	common_virus_hmm	common_virus	C76	24097	1111080	1135177	GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote_CDS_0045	persistent	direct	high	1142	0.999	GCA_001547835.1_01196
GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote	cenote	CDS	1132563	1132838	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C76	21484	21759	GCA_001547835_1_1_1128	GCA_001547835_1_1_1128	-	1744827	.	PDB:1MUL_A	DNA-binding-protein	MANKQDLIAKVAEATELTKKDSAAAVDAVFSTIEAFLAEGEKVQLIGFGNFEVRERAARKGRNPQTGAEIEIAASKVPAFKAGKALKDAVK*	common_virus_hmm	common_virus	C76	24097	1111080	1135177	GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote_CDS_0046	persistent	direct	high	275	0.996	GCA_001547835.1_01197
GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote	cenote	CDS	1132937	1133524	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C76	21858	22445	GCA_001547835_1_1_1129	GCA_001547835_1_1_1129	-	1744827	.	PF09911.9	Uncharacterized protein conserved in bacteria (DUF2140)	MKKKSNLNWWKWSFLCLLAFNTAFLMVIASRLIQVREPESELIAKKPVKNIKIGTFVTTREQLNETVASYLKDYQTEKMSYKFYATSSSILFEGTYQLLGYEVPLYIYFQPHRLENGAVQLQVISFSVGTLPLPEKDVLQYLKSSYKLPSFVKVMPNQSAIVVNLQDIQNDAKVYLKAKKIDLFNDEISFNIYKK*	hhsuite_tools	nonviral_gene	C76	24097	1111080	1135177	GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote_CDS_0047	persistent	direct	high	587	0.998	GCA_001547835.1_01198
GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote	cenote	CDS	1133502	1134362	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C76	22423	23283	GCA_001547835_1_1_1130	GCA_001547835_1_1_1130	-	1744827	.	cd04506	Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. This subfamily contains sequences similar to Bacillus YpmR.	MRLWFVMNNRHLFSGIFFFVISLCLAFLLLNIIIPKSNSRLKKSDFLKKEQVAIQYVAIGDSLTEGVGDLTHQGGFVPLLTNDLSEYFKANVNHQNYGVSGDTSQQILDRMIKQKQIQLSLKKADIMTLTVGGNDVMAVIRKNLADLQVSSFRKPARQYQKRLRQIIELARKDNKDLPIFILGIYNPFYLNFPELTDMQKVIDDWNTKTKEVVGEYDRVYFVPINDLLYKGINGQEGIVHSSGDQTTIVNDALFTGDHFHPNNTGYQIMSNAVMEKIKKHEKKIKP*	mmseqs_cdd	nonviral_gene	C76	24097	1111080	1135177	GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote_CDS_0048	persistent	direct	high	860	0.999	GCA_001547835.1_01199
GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote	cenote	CDS	1134337	1135176	GCA_001547835.1	AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835.1_AP014585.1	GCA_001547835.1|AP014585.1	GCA_001547835_1_1	GCA_001547835_1_1@C76	23258	24097	GCA_001547835_1_1_1131	GCA_001547835_1_1_1131	-	1744827	.	TIGR00762	EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity. [Unknown function, General]	MGTIKIVTDSSITIEPELIKALDITVVPLSVMIDSKLYSDNDLKEEGHFLSLMKASKSLPKTSQPPVGLFAETYENLVKKGVTDIVAIHLSPALSGTIEASRQGAEIAEAPVTVLDSGFTDQAMKFQVVEAAKMAKAGASLNEILAAVQAIKSKTELYIGVSTLENLVKGGRIGRVTGVLSSLLNVKVVMALKNDELKTLVKGRGNKTFTKWLDSYLAKNSHRPIAEIAISYAGEASLALTLKERIAAYYNHSISVLETGSIIQTHTGEGAFAVMVRYE*	mmseqs_cdd	nonviral_gene	C76	24097	1111080	1135177	GCA_001547835.1|AP014585.1@region_1111081_1135177@tool_cenote_CDS_0049	persistent	direct	high	839	0.999	GCA_001547835.1_01200