core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	18452	18604	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	1	153	GCA_001560895_1_1_15	GCA_001560895_1_1_15	+	2167922	.	.	hypothetical protein	MSQMLISVTLSCDGERSLVAKLVTSHCQEKLLAFKHTLPVPQTDTGSRGE*	.	hypothetical_protein	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0001	.	unmatched_CDS	none	0	0	.
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	20411	20686	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	1960	2235	GCA_001560895_1_1_16	GCA_001560895_1_1_16	-	2167922	.	PFAM:PF01610.16	Transposase	MKKYDFQKPSKIPYLETTSMPTRILLRKRRFKYYQCPKMMVSETSIVKKNHQIPRIINQKIAQKLIEKTSMTDITHQLSISTSTVEFLGSG*	common_virus_hmm	common_virus	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0002	persistent	direct	high	275	0.996	GCA_001560895.1_00021
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	21185	21421	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	2734	2970	GCA_001560895_1_1_17	GCA_001560895_1_1_17	+	2167922	.	NF038388	sigma(X)-activator ComW. The pneumococcal DNA-binding protein ComW, critical for natural transformation, interacts with the sigma factor that is a master regulator for competence, sigma(X).	MLQKIYEQMTDFYRNIEEEYGTVFGDNFDWEHFHFKFLIYYLVRYGIGCRRDFIVYHYRVAYRLYLEKMIMNRGFISC*	mmseqs_cdd	nonviral_gene	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0003	persistent	direct	high	236	0.996	GCA_001560895.1_00022
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	21652	22938	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	3201	4487	GCA_001560895_1_1_18	GCA_001560895_1_1_18	+	2167922	.	PRK01117	adenylosuccinate synthetase; Provisional	MTSVVVVGTQWGDEGKGKITDFLSANAEVIARYQGGDNAGHTIVIDGKKFKLHLIPSGIFFPEKISVIGNGMVVNPKSLVKELSYLHEEGVTTDNLRISDRAHVILPYHIELDRLQEEAKGDNKIGTTIKGIGPAYMDKAARVGIRIADLLDKDIFRERLERNLAEKNRLFEKLYDSKAIAFDDIFEEYYEYGQQIKKYVTDTSVILNDALDNGKRVLFEGAQGVMLDIDQGTYPFVTSSNPVAGGVTIGSGVGPSKIDKVVGVCKAYTSRVGDGPFPTELFDEVGERIREVGHEYGTTTGRPRRVGWFDSVVMRHSRRVSGITNLSLNSIDVLSGLDTVKICVAYDLDGQRIDYYPASLEQLKRCKPIYEELPGWSEDITGVRNLEELPENARNYVRRVSELVGVRISTFSVGPGREQTNILESVWS*	mmseqs_cdd	nonviral_gene	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0004	persistent	direct	high	1286	0.999	GCA_001560895.1_00023
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	23201	24349	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	4750	5898	GCA_001560895_1_1_19	GCA_001560895_1_1_19	-	2167922	.	PDB:1XO0_A	Recombinase	MKYNKTKYPNIYYYETAKGKRYYVRRSFFFRGKKREKSKSGFTTLPQARAALVELEQQIQEQELGINTNLTLDQYWDIYSEKRLSTGRWNDTSYYLNDNLYKNHIKPKFGSVLLKNLDRNEYELFIAEKLQNHTRYTVQTLNSSFMALLNDAVKNGNLLSNRLKGVFIGRSDIPAANKKVTLKEFKTWIAKAEEIMPKQFYALTYLTIFGLRRGEVFGLRPMDITQNDSGRAILHLRDSRSNQTLKGKGGLKTKDSERYVCLDDIGTDLIYYLIAEASKIKRKLGIIKEQQKDYITLNEKGGLINPNQLNRNFNLVNEATGLHVTPHMMRHFFTTQSIIAGVPLEQLSQALGHTKVYMTDRYNQVEDELAEATTDLFLSHIR*	common_virus_hmm	common_virus	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0005	cloud	direct	high	1148	0.999	GCA_001560895.1_00025
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	24658	25401	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	6207	6950	GCA_001560895_1_1_20	GCA_001560895_1_1_20	-	2167922	.	PFAM:PF02452.16	antitoxin-mazE-like	MNKLEKNNLDKLTVSTDKMKQLTVENPNHFKTSRLGQSMTNYSNQLEREIQGKRRRNRVFPYGTLVYVDFGINFGSEFSAPHYAITLTKEDKKNRNTITVIPLTSKPGYDNLPLEFNLAEGLGLLTTQLIKAAEDKVENELVSHFGEYDDFDELISKLEKEGRLDEKERAINLVQKLTDNVSLAGQRLEKYVSDLDKTTYAKLDSITTIDKVKIFKKINPLDGIGVAQILEPQMKILSDEIKARYLI*	phrogs_hmm	hypothetical_protein	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0006	cloud	direct	high	743	0.999	GCA_001560895.1_00026
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	25507	25938	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	7056	7487	GCA_001560895_1_1_21	GCA_001560895_1_1_21	-	2167922	.	.	hypothetical protein	MKIGMRKPSLTRSLKARTTSKWKRQAKKALIPGYGQKGVGWIKNPKKALYNKVYHKTTFGLSDLFTPSKKRKKKTTKNQTSTKSTKKYTAKNYKEAGIVLIVIGAIFLFLFPPLGFFLFITGFISYIISYLTLKHEKNKRKDI*	.	hypothetical_protein	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0007	cloud	direct	high	431	0.998	GCA_001560895.1_00027
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	25950	26333	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	7499	7882	GCA_001560895_1_1_22	GCA_001560895_1_1_22	-	2167922	.	PDB:3DTE_A	IrrE-protein	MTEKEIISHFQIRIMDFDGDLMPDELGFYEKETNTAFLSNKLSKKERVKVLLHELGHKDHTRSEYQNARLRCENEADRNMIHHLVKDALESLDDPTEFDYLKFMSYYNLKTMTNEVMIKEEYKSLIG*	common_virus_hmm	common_virus	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0008	cloud	direct	high	383	0.997	GCA_001560895.1_00028
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	26346	26735	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	7895	8284	GCA_001560895_1_1_23	GCA_001560895_1_1_23	-	2167922	.	PDB:1PRA_A	Repressor-protein	MLRKVDKTMFLTFERIKELANKQGLSINALEEKLGYSRNTLYSLKKQKASTERMQEIADYLNVSLDYLLGRTDNPAIAGNSKEYTWQGKALNVEEMASNVMMFGGRELTDEKKKIIQSIIEGYLKEAGD*	common_virus_hmm	common_virus	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0009	cloud	direct	high	389	0.997	GCA_001560895.1_00029
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	26998	27207	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	8547	8756	GCA_001560895_1_1_24	GCA_001560895_1_1_24	+	2167922	.	PFAM:PF10078.8	transcriptional-repressor	MSQQHKKWIRLVKDKLNSERMTQTHLARACGVKKSTISELLKYGKGSDKLKNRVCDVLRIDETWVELGE*	phrogs_hmm	hypothetical_protein	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0010	cloud	direct	high	209	0.995	GCA_001560895.1_00030
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	27211	27921	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	8760	9470	GCA_001560895_1_1_25	GCA_001560895_1_1_25	+	2167922	.	PFAM:PF10547.8	P22_AR-repressor-domain-protein	MNEIFNFHGQEVRTLTIDNESWFVGKDVADILGYSKARNAIALHVDEEDALKQGIPTSGGTQDMLIINESGLYSLILSSKLPQAKEFKRWVTSEVLPAIRKQGGFIREDLDEDAFIALFTGQKKLREQQATMLEDIDYLKSEQPIHPSYAQSLLKKRKARVVACLGGIDSPAYADKIFAQSVFRQAEIDFKDHFNISRYDLLPKKFAEAALAYWMTWEPSTNTKMKIMKLNSFDEG*	common_virus_hmm	common_virus	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0011	shell	direct	high	710	0.999	GCA_001560895.1_00031
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	27934	28191	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	9483	9740	GCA_001560895_1_1_26	GCA_001560895_1_1_26	+	2167922	.	PFAM:PF09035.9	Excisionase	MDNVLLSLSEWIKSIIKDTITRLVEIEKDSDHYPELMDVNTTCDFLGIKYATFSDNYRYLKGFPKELPGKKWSKRAIKEWLSNQI*	common_virus_hmm	common_virus	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0012	cloud	direct	high	257	0.996	GCA_001560895.1_00032
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	28272	28484	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	9821	10033	GCA_001560895_1_1_27	GCA_001560895_1_1_27	+	2167922	.	.	hypothetical protein	MNNLQIIAVGTVVSVVLIESLMMNIKLKMAMRQKKKIQFQAPQVEKGFIDFKTGRRVDIDPVTRKETFVD*	.	hypothetical_protein	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0013	cloud	direct	high	212	0.995	GCA_001560895.1_00033
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	28499	29299	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	10048	10848	GCA_001560895_1_1_28	GCA_001560895_1_1_28	+	2167922	.	PFAM:PF09681.9	replisome-organiser	MVVKNKRYYWIQLAQDFFKSKEMKLLRKIAGGDTHTIIYLKMMLISLEDGGHIYYDGLADNLAEEIALVIDENVEDIKITLIFLESKGLLTRRNDRDYFLEQVPEMVGSETASTRRSRKHRELRGLHCNTIATTCNGDIDIEKDIDTEIEKENNKTIVSSSLSENLKHSGIRINNKQHQQLLEYVGLDGMSFDMLNRAIEITSEVYQPSFKYLRGILENWKKKGFTTIEQVDDNDQKYKDSKNSHLQGRQQNEKKSEQGAKDEWGF*	rep_hall_hmm	common_virus	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0014	cloud	direct	high	800	0.999	GCA_001560895.1_00034
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	29287	29445	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	10836	10994	GCA_001560895_1_1_29	GCA_001560895_1_1_29	+	2167922	.	.	hypothetical protein	MGILELIEQFEDDFYPISDEKKSLLIKQPLSTVTACLSDMASWKACGGKVSW*	.	hypothetical_protein	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0015	cloud	direct	high	158	0.994	GCA_001560895.1_00035
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	29439	30209	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	10988	11758	GCA_001560895_1_1_30	GCA_001560895_1_1_30	+	2167922	.	PDB:4M4W_K	Replicative-helicase	MVTDALEEMALSYHRNTEQQAEICEKHGIPLIKILRTNDVLCRLCESERIHAENQIKVNELADAEHERERKFYLERFSLYDDVLKNATLDNFDTPTEKEAEKLKFAKKICREWAGGARNNVVFQGEAGTGKSHLAFGIMKALSETTKEIAIFINVTDLLMKIKADFSQEEFLVNKISSAKFLVLDDLGMEKDSEWSFSILYNILNKRANTVITTNLTAQEIQKRYGRPFMSRLMKGVDNDHLMVFNDLKNKRKDYF*	rep_hall_hmm	common_virus	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0016	cloud	direct	high	770	0.999	GCA_001560895.1_00036
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	30224	30454	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	11773	12003	GCA_001560895_1_1_31	GCA_001560895_1_1_31	+	2167922	.	.	hypothetical protein	MLLKLYFIYNGHRKFFLGSFNNVDELIERMKDHQWTFSGITRPKFKKYIGKDDVRFDYGAVDCYYLATKSTCREPR*	.	hypothetical_protein	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0017	cloud	direct	high	230	0.996	GCA_001560895.1_00037
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	30558	31640	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	12107	13189	GCA_001560895_1_1_32	GCA_001560895_1_1_32	+	2167922	.	PDB:3ME5_A	Cytosine-specific-methyltransferase	MKFLDLFAGIGGFRLGMESAGHECIGFCEIDKFARASYKAIHDTKGEIELHDITRVTDESIRRIGRVDAICGGFPCQAFSIAGKRRGFEDTRGTLFFEIARFASILRPQYLFLENVKGLLNHENGITFETIISTLDELGYDVEWQVLNSKDFGVPQNRERVFIIGHFRGECTRRIFPLSGQSQSISNKSVVKIGNVNPSGNGMNGEVYQADGLAPTLTTNKGEGQKIAIKSNTIKQFGVLQPNFNQCGVVYETDGIAPTIRAYQGGGLEPKIIQRGHGYNQGGVHEIAPTLTSNSYHENNHLSFGYRIRKLTPRECWRLQGFPDWAFDKAQEVNSNSQLYKQAGNSVTVNVIAAIAKELQ*	common_virus_hmm	common_virus	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0018	cloud	direct	high	1082	0.999	GCA_001560895.1_00038
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	31637	32140	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	13186	13689	GCA_001560895_1_1_33	GCA_001560895_1_1_33	+	2167922	.	PFAM:PF03819.16	MazG-like-pyrophosphatase	MNTLENVKQWFIDRDLENGGRLDKQSLKLSEEFGELCAGYLKKNEQLTKDSIGDCAVVIVGLALLIKVDVQEIFDAVFSDGCHVIECLVFLNRTISNIQLSNGFTDKDLYIVDLTRSIYWLKSISDILGYSFDECFELAYQEIKDRKGRWIDGSFVKEEDLPDDSKI*	phrogs_hmm	common_virus	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0019	cloud	direct	high	503	0.998	GCA_001560895.1_00039
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	32124	32528	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	13673	14077	GCA_001560895_1_1_34	GCA_001560895_1_1_34	+	2167922	.	pfam09643	YopX protein. YopX is a protein that is largely helical, with three identical chains probably complexing into a twelve-chain structure.	MIPKFRGLSIDENSKGEWQYGHLIEDRGRAFIINEVVEANEQYITIGSWCPVNIESVGRFTGMFDKNLREIYEKDVLGTKDGLLNGVVEYRSDLGMWTNSLISYNNFERLCNVAGNREIIGNIYENQEILKEKE*	mmseqs_cdd	common_virus	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0020	cloud	direct	high	404	0.998	GCA_001560895.1_00040
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	32525	32845	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	14074	14394	GCA_001560895_1_1_35	GCA_001560895_1_1_35	+	2167922	.	.	hypothetical protein	MRYFKILCVVLFASFLVACHEISSGTVVDKYIDEPHTTFIPVTTGKSSVLVPTRTKRKYILVVSGRAGNKQVEETFEVTAEEYKHYEIGNTFIQDAALENEEGDRE*	.	hypothetical_protein	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0021	cloud	direct	high	320	0.997	GCA_001560895.1_00041
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	32842	33546	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	14391	15095	GCA_001560895_1_1_36	GCA_001560895_1_1_36	+	2167922	.	pfam07852	Protein of unknown function (DUF1642). The sequences making up this family are derived from various hypothetical phage and prophage proteins. The region in question is approximately 140 amino acids long.	MNIQGLIERYEKFKASKKKLTSVDLVLKDLRSLDEPEPLPFKLKDVVRRIRGFDPTTQTRWLNDILKELGDDYGSMKYRSGYEQGKLEGAWVGNQLKDADKIRQELNKVLLPNFMDDWIFECQLLKNFSLRDALDSNTIHLYAKKSEFVKKWLNDKNNQELFARAWLTDYEAEKEPKYKVKLKNTDDYLNQTETGFHFFNNGKNNEKFTRKELEYSGFGEVFNSPLFEVEEVER*	mmseqs_cdd	common_virus	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0022	cloud	direct	high	704	0.999	GCA_001560895.1_00042
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	33543	33929	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	15092	15478	GCA_001560895_1_1_37	GCA_001560895_1_1_37	+	2167922	.	.	hypothetical protein	MNNEVFEELKKLMSYFPDSFINRQLELILIPKTNTYFSLRDCLTKNDVISKVLMWCTRDIDKGEPYQQRKRNIDFYVDNRDRLRKYLGSDINVHVVYNHLGNGINKELTHRFIESGFDMDLLYKELKE*	.	hypothetical_protein	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0023	cloud	direct	high	386	0.997	GCA_001560895.1_00043
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	33926	34186	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	15475	15735	GCA_001560895_1_1_38	GCA_001560895_1_1_38	+	2167922	.	pfam07116	Protein of unknown function (DUF1372). This family consists of several Streptococcus bacteriophage sequences and related proteins from Streptococcus species. Members of this family are typically around 100 residues in length and their function is unknown.	MKRFIAIWILLSAGLNIWQSIHIKKLEAKRPIVVYKADNQGAEIKGRILQKEKIGDMYTITVQNYGVFVVNKTNYESLKIGDEVRL*	mmseqs_cdd	common_virus	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0024	cloud	direct	high	260	0.996	GCA_001560895.1_00044
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	34186	34437	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	15735	15986	GCA_001560895_1_1_39	GCA_001560895_1_1_39	+	2167922	.	.	hypothetical protein	MTKYKKPTYIIIQEAMAERIRFLEDELYERAYKDIEKLEAQNDFLKGLCNNQIEIIMDYEWKQMQEQAAFIKANTRKWRARCN*	.	hypothetical_protein	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0025	cloud	direct	high	251	0.996	GCA_001560895.1_00045
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	34428	34751	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	15977	16300	GCA_001560895_1_1_40	GCA_001560895_1_1_40	+	2167922	.	PRK04140	transcriptional regulator. 	MQLRLKELREDLCLSVGQMAKETGVSQNTIHLYERGGYPSIKQIEMIAKTYDVNPAWLVGWIDDEMMPGVQVVEKVVYKESPTARLPDYFNNNNEGKIIKWKQSRRY*	mmseqs_cdd	nonviral_gene	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0026	cloud	direct	high	323	0.997	GCA_001560895.1_00046
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	34787	35212	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	16336	16761	GCA_001560895_1_1_41	GCA_001560895_1_1_41	+	2167922	.	TIGR01637	phage transcriptional regulator, ArpU family. This model represents a family of phage proteins, including ArpU, called a putative autolysin regulatory protein. ArpU was described as a regulator of cellular muramidase-2 of Enterococcus hirae but appears to have been cloned from a prophage. This family appears related to the RinA family of bacteriophage transcriptional activators and to some sporulation-specific sigma factors. We propose that this is a phage transcriptional activator family. [Mobile and extrachromosomal element functions, Prophage functions, Regulatory functions, DNA interactions]	MPFFPDINEAKTKENAKKILKGYPRWRRVANDTEGQRVTTTYSFMPRNPSSGRNSQVEKLAIRKVDAELELDAIEQAVSNLHDPLYRRILFEKYLQWDCKKDEVISRDLAISESSYYDILEKALMAFAELYRNGEQVEILE*	mmseqs_cdd	common_virus	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0027	cloud	direct	high	425	0.998	GCA_001560895.1_00047
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	35347	35913	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	16896	17462	GCA_001560895_1_1_42	GCA_001560895_1_1_42	+	2167922	.	CDD:cd01192	site-specific-tyrosine-recombinase	MKKVEPIRELDDIERMKDFLKSKSERNYVLIMCGLYSGMRISDIIPLQVKQVTGDRIEVTEKKTGKVKRFAINPELRKALSHYIKTNDLKGYDYLFPSKKKVRTDGVRIVHIGRVAAYQILKQAAEHVGLKNIGTHSMRKSFGYHHYRKNQNVAILMELFNHSSPDITLDYIGIKQDELDDSMMNFSY*	common_virus_hmm	common_virus	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0028	cloud	direct	high	566	0.998	GCA_001560895.1_00048
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	36128	36472	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	17677	18021	GCA_001560895_1_1_43	GCA_001560895_1_1_43	+	2167922	.	pfam01844	HNH endonuclease. His-Asn-His (HNH) proteins are a very common family of small nucleic acid-binding proteins that are generally associated with endonuclease activity.	MNTPQERPDRSGPHRVAFEKNKKIILKTRNTCGICGLPVDKSLKYPHPLSPVIDHIIPINRNGHPSDINNLQLAHWQCNRQKSDKLYADDKSASTTVVGNRNLPQSRDWTKYRS*	mmseqs_cdd	common_virus	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0029	.	unmatched_CDS	none	0	0	.
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	36673	37941	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	18222	19490	GCA_001560895_1_1_44	GCA_001560895_1_1_44	+	2167922	.	PDB:2JES_G	Portal-Protein	MELRGIDYLRRKLNLYQSRVNLRYKHYAMQHYEAPTGITIPAHIRVKYQAVLGWAAKGVDSLADRLIFRAFANDDFNVTEIFNRNNPDIFFDSAILAALIGSCSFVYISKGEDDEVRLQVIESSNATGVIDPITGLLVEGYAVLARDDYNRPTLEAYFEPNATHFIPKDGRPYSVVNETGIPLLVPVIHRPDAVRPFGRSRITRAGMYYQKYAKRTLERADITAEFYSWPQKYILGLDPDAEPMEKWKATVSSLLTISSSDKGEKPSVGQFTTASMSPFTEQLRTSAAGFAGEMGLTLDDLGFVSDNPSSVEAIKASHENLRLAGRKAQRSLGAGLLNVAYVAACLRDEFRYARSQFVRTTVKWEPLFEADANTMTMIGDGVVKLNQALPGYINAETIRDLTGIAGDMSAKPVVSEGDSNGE*	hallmark_hmm	common_virus	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0030	cloud	direct	high	1268	0.999	GCA_001560895.1_00049
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	37931	39322	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	19480	20871	GCA_001560895_1_1_45	GCA_001560895_1_1_45	+	2167922	.	PFAM:PF06152.10	minor-head-protein	MENDVLPSILQEVQERFERDFGKSEIVKNAFAALKAKKATYKTANEFAIEIGDILSKALGASLSTDKLPDGKMYYNIAQRLLTDVLGRNHELVSGYTSDVQKNLNDKAKIGLKVQVPELNLDRIAGIVNRFSSEENFEDVSWLLGEPIVNFTQSIIDDSIQKNAEFHHQSGLQPEIVRKSYFHCCEWCQEVQGSYKYPRVPKDVYRRHQHCRCIVDYDPKSGKVQDVWKKIWRKKDESDKIEARKDINNNSQMSEVRKLALQNGISSNPIKKSRKKLTEKQIIEAVSGGDKTRGSCSSAAFAYIGNKGGYTVLDFRGGKSCDFFSRDSRIKMIGSLPGVEMHVAKHTNDFTAVKELLEKVESGNEYYLATGRHAAIIRKNEGRFEYLELQSRTLNGFKPFNNIVLKERFKGQKSHSAAGRRYDANSYLIDVNSLKDNPEFHKILSFINTADSKQMKGAEGRER*	phrogs_hmm	hypothetical_protein	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0031	cloud	direct	high	1391	0.999	GCA_001560895.1_00050
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	39312	39551	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	20861	21100	GCA_001560895_1_1_46	GCA_001560895_1_1_46	+	2167922	.	.	hypothetical protein	MKDDYEEVNWSEYCYKENDGDKVWWVDTAWFARGLMLITFDKKKFYNLFEDYPHNMSSEEIEIFDKENPFWADFFSDRK*	.	hypothetical_protein	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0032	cloud	direct	high	239	0.996	GCA_001560895.1_00051
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	39662	41074	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	21211	22623	GCA_001560895_1_1_47	GCA_001560895_1_1_47	+	2167922	.	PFAM:PF03354.14	Large-Terminase	MARKKLGNQNPTQSVILKYVKKNSKAKEAIELYERTGLSCYAWQKNLLLPMMAVDKNGLWVHQKFGYSIPRRNGKSEILYILEIWGLHKGLNILHTAHRISTSHSSFEKVKRYLEKMGYVDGEDFNSIRAKGQERIELYSTGGVIQFRTRTSNGGLGEGFDMLIIDEAQEYTTEQESALKYTVTDSENPITIMCGTPPTPVSSGTVFTKYRETCLFGKGKYSGWAEWSVSDEKEIDDVEAWYNSNPSMGYHLNERKIEAELGEDKLDHNIQRLGFWPTYNQKSAISETEWNELKVDDIPELSGKLSVGIKYGQDGTNVALSIAARTKDGRFFVETVDCQSVRNGNEWMVAFLRQSDVAQIVIDGASGQKILDEELKDYRIKNVILPTVKEIIVANALWEQGIYQKTICHAGQPSLSKVATNCDKRNIGSNGGFGYRSHFDDMDISLMDSALLAHWACSTTKPKKKQKISY*	hallmark_hmm	common_virus	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0033	cloud	direct	high	1412	0.999	GCA_001560895.1_00052
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	41149	41613	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	22698	23162	GCA_001560895_1_1_48	GCA_001560895_1_1_48	+	2167922	.	PDB:6B0X_d	Major-Capsid-protein	MRMSEFKPITTQEEFDAAIKERLSREKAKYSDYDQLKSRVTELETENVGLKSTIEANNQSKADADKQLEEMQSQIAGYETASLRTRVALQYGLPYDLADRLQGTDEESFKADAERLAGFMKKSQQVYPLGTKEPSSIDDKDAALKGMLHKMRGE*	hallmark_hmm	common_virus	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0034	cloud	direct	moderate	458	0.985	GCA_001560895.1_00053
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	41617	42507	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	23166	24056	GCA_001560895_1_1_49	GCA_001560895_1_1_49	+	2167922	.	PDB:3JB5_B	Major-Capsid-protein	MATLQTGDLFPVETVQDIFSKVKGHSTLAKLTTQEPIPFSGTETFVFNLEGNAEIVGEGNPSNAGNATMKPKVIKPILITYQARVSEEFVHCSEEKQLSYLKSFIDGLAKKVAQAIDIASFHGLEPKSMTDASFKATNSFDGLITGNVVTYEADKIDENIDAAVATVTANDCEVNGIALSPAAGAALGKIKVNGVVQYPEYRFGQNPDSFYGMKSDVNKTLTTVANSAKKDHVIVGDFENAVKWGYADEIPLEIIKYGDPDGAGRDLKRYREVCLRTEVYVGWGILDEQAFARVEA*	hallmark_hmm	common_virus	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0035	cloud	direct	high	890	0.999	GCA_001560895.1_00054
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	42509	42715	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	24058	24264	GCA_001560895_1_1_50	GCA_001560895_1_1_50	+	2167922	.	PFAM:PF08198.10	Arc-like-repressor	MEYINKETLVTIETDSELAGDWVPISEFKDEYRLTVPEIKAKLDELGVEYDSKANKSTLLDLLIANEG*	phrogs_hmm	hypothetical_protein	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0036	cloud	direct	high	206	0.995	GCA_001560895.1_00055
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	42721	43116	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	24270	24665	GCA_001560895_1_1_51	GCA_001560895_1_1_51	+	2167922	.	PFAM:PF09355.9	head-to-tail-adaptor	MENFATVEDLKKLWRALKFDEEKRAEALLEVVSHSLRVEAKKVGKDLDGLVATDPSFAMVVKSVTVDVVARTLMTSTDQEPMTQVAESALGYSFSGSYLVPGGGLFIKDSELKRLGLKKQRYGVIDIYGTD*	hallmark_hmm	common_virus	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0037	cloud	direct	high	395	0.997	GCA_001560895.1_00056
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	43103	43441	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	24652	24990	GCA_001560895_1_1_52	GCA_001560895_1_1_52	+	2167922	.	PFAM:PF10665.8	Minor-capsid-protein	MGRIKGITVTLIGKAKNGKDDFGHPIYENKEIQVENVLVVPSSTEDVTNQLNLTGKKAAYTLGIPKGDQNEWKDREVRFFGRKWRTIGIPLEGIEAMMPLEWNKKVMVEAYE*	hallmark_hmm	common_virus	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0038	cloud	direct	high	338	0.997	GCA_001560895.1_00057
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	43434	43670	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	24983	25219	GCA_001560895_1_1_53	GCA_001560895_1_1_53	+	2167922	.	Uniprot:A0A0C5ADH8_9CAUD	type-I-neck-protein	MSNTKVKLIGAGVGSLLKSKEIQDILNKEATVIKKRCGPGYEQDSHVGKTRVNAMIYPATRKAKRDNLKNNTLLKAVH*	hallmark_hmm	common_virus	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0039	cloud	direct	high	236	0.996	GCA_001560895.1_00058
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	43671	44006	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	25220	25555	GCA_001560895_1_1_54	GCA_001560895_1_1_54	+	2167922	.	PDB:2LFP_A	tail-completion-protein	MIEIIIKKYLDGHLDVPSFFEHEAEAPDSFVIIQKTGGKERNHSGSATFAFQSYGPTMQKAAELNVKVKKAVKGLIELDSICGVHLNSDYNFTDTETKQYRYQAVFDINYF*	hallmark_hmm	common_virus	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0040	cloud	direct	high	335	0.997	GCA_001560895.1_00059
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	44021	44572	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	25570	26121	GCA_001560895_1_1_55	GCA_001560895_1_1_55	+	2167922	.	UniProtKB:F8S0S2_9CAUD	tail-protein-	MATEANVTTAKPKIGGAVFSAPIGTPLPTDATTKLDVAFKSLGYISEDGMTNSNSPESENIKAWGGVVVSSVQKEKVDTFKYMLIEALNVDVLKEVYGSDNVSGDLSTGIKIKANSKELPHHCLVIETVLKGGVLKRIVIPSGKVTAIDEITYNDGSVLGYGTTVTAFPNAADDTHYEYIKGA*	hallmark_hmm	common_virus	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0041	cloud	direct	high	551	0.998	GCA_001560895.1_00060
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	44575	44886	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	26124	26435	GCA_001560895_1_1_56	GCA_001560895_1_1_56	+	2167922	.	.	hypothetical protein	MSRRNRKKKNNGATPQIKTIRGVTSTGFAFEITKERLENYELLEVIAEVDTNPAVLPKVVKLMLGDKSEDLKNHVRTADGIVPLDKMGAEISEIFTSQNQLKK*	.	hypothetical_protein	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0042	cloud	direct	high	311	0.997	GCA_001560895.1_00061
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	44901	45281	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	26450	26830	GCA_001560895_1_1_57	GCA_001560895_1_1_57	+	2167922	.	pfam17318	Family of unknown function (DUF5361). This is a family of unknown function found in Bacteria.	MIQTDEDALICDLAETYGIFDYRQLPADQVAIFAFGLRDDSRIKLAMTNSKVPFETFLLAGVLDRLSALVWFKTTDGQKGINKPLMVAEELTGKTKAKESKEMIFDSGEDFEEYRQQILEKIGGED*	mmseqs_cdd	nonviral_gene	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0043	cloud	direct	high	380	0.997	GCA_001560895.1_00062
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	45281	48304	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	26830	29853	GCA_001560895_1_1_58	GCA_001560895_1_1_58	+	2167922	.	UniProtKB:R2PRN9_9ENTE	tail-tape-measure-protein-	MATEIAQAYVQLIPSARGITGKIQSILNPEASAAGQSAGQSLGSSLVGVMTKVIAAAGIGKAFSSAISEGAALQQSLGGIETLFKGSADKVKGYANEAYKTTGLSANAYMENVTGFSASLLQSLGGDTNKAAETANMAMIDMSDNANKMGTSMESIQMAYQGFAKQNYTMLDNLKLGYGGTKQEMERLLNDAQKLTGVKYDINNLSDVYSAIHAIQENLDITGTTAKEAASTFSGSFESMKAAAQNVLGKLALGENILPSLHALLKTTSTFLFDNFLPMVGNIFSGLGLVLTEGISEIASQLFGDAFGSAVYSQLSRVTGIFQTFFDMIFGSLSKQDNIDILTMLGFSEGAANQIVNIADNIRVTFENIGVVAGNVASIVVDFVGDLLGIKDGEQGVNLLGIAFESITGFIRDASESLSKFTSWLKDSPLALDALKSAVVGITSAWAGYKAVLAVTKGIETIRNATLAITNGLMLAQFVRTGALTTAEAANAAATMGASGAFGIFNAVLSANPIGLIVTAVAALTAGLVWFFTQTETGQQIWSSFVDWIKQAWQGIADFFVGLWSGISEGASTLWDGVVTTWNAYVESLKAMWNAVVTFFSDLWVSIQEAASVAWTAITTAVMVIVQPFIDGFMNIWNNISDGLTQIWEGIKMIFQGAWEFIKSIFLGAILIIIDLVTGNFNQLGADLSLIWEGIKNSISMIWEGIKTYFSGVVDVIVGYGIAVFENFSAALSAIWEFIKSAASSTWEWIKSTVISLITGLVQEAQNIWDGFMNFLSSLWEGIKSTASNAWSSLASSVLSIINGLVSGAQNAWNTMSNAVSSLVSNVTGFFNQLWNIDLYSAGQAILQGFLNGLQSMWSSVTNFVGGIASWIRDHKGPIEYDRKLLIPAGTAIMKGLDQGLQDQFKEVKQTVGGMAGEISDVFSGDHLDLNSSASVTKSLEAQLAMPSAQFEAHENKTVSEIAILRASMEKILTAILEKSSDVYLDNDIISIKTYEQHGAIYARGGI*	hallmark_hmm	common_virus	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0044	cloud	direct	high	3023	1.0	GCA_001560895.1_00063
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	48304	48999	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	29853	30548	GCA_001560895_1_1_59	GCA_001560895_1_1_59	+	2167922	.	PDB:2X8K_A	Distal-Tail-Protein	MDYMIINGFNTSSLPGCDVTDFGKVEAAKPKGEKADLYGVNGSYRVLDGSFDSYERTFILYVKKMVEISSILDKFQSNDNVLEFSYQLGSLFYANFVTASFEPFGNHAWKLEIKLEMQPFRYQKSVEPVVLTASGTITNLGTIYSEPIIEVEGDGDISLTIGRKTMYLTIKTKATIDCRQGKQNIYNATGAVQNTLRKRGGFLEIPTGKTGVSFTGTVRKITIRPNWRYKI*	hallmark_hmm	common_virus	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0045	cloud	direct	high	695	0.999	GCA_001560895.1_00064
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	48996	53462	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	30545	35011	GCA_001560895_1_1_60	GCA_001560895_1_1_60	+	2167922	.	PDB:3GUD_A	Neck-appendage-protein	MIFLTNGNMPLNAAYSDEIVQEDNSTYQLSFRFPTSDPLWEKLKEETFLTADDLHGEQDFVIFEVEKKHGYIQVYANQVFTLLNNYVVNTISLDRQTGSTALSRFAGAITRDNPFSFFSDIEDRHTFNIGSKNAMEAFAKDKHSIIGQWGGDLVRHGYQVRLLKNGGSENESLFMYKKNLSSYQHKTSTKSLKTRITFTTTVKGEGEKAPDRTFTVTIDSPLINKYSQIYEDVIEVNDQDVKDEASLRKYGEQYYRTSLCDMMEDSLEIEVVGQSDVPVQMFDVVSIFHEQYNLDVRKKITKYTYSPMGKKLKTIGFGQFKSGLANAIGNAVSDAVKGEAQQLQDDFERQLARELKNADLAFDRKTEELKNEFEDGLNATRAKAEEVKQELSDNINQRFNSFNSGPLQEAKRRAEEALRNAGASTLLAQEAKRIGLDSIAKLEAFKSQATSAQTTLSGAIDALKQTIANDIRPKQAQAEAEIAKQVEALVQTKKELAGVKSAQATYEETTTRRLSELTNLANGKASKSELVQTAEELASRIASVRVGGRNYYRDSEKVRTSTRFFPFPLHPYLTQENVGETWTLSFDLKINEGGEIRPLHFYHYQTNRFGLKASADITPSREWQRFTFTGPVVFPNDDPRYSRGEMALYDYGGNNNYSVRRIKLEKGTLATDWSPAIEDTDGQISAVESNFKQRADALDAGVRRLTEGLRTKADISALNVTAENIRQSVKSLETNMQNKLDQTLSMAEFEVRAGSIRQEILNSTKDKADKTLVVAEAGKLREEFSNLRVGGRNYYRDSEKIRTSTRFFSIPLHPYLTQENVGETWTLSFDLKINEGGEIRPLLFYHYQNNRFGLKASANITPSKEWQRFTFTGPVIFSNDDPRYSRGEMALYDYAGNNNYSVRRIKFEKGTLATDWSPAIEDTDGLITEAKATFERTAQGLRTDLSAIQEYVNKDGQRQESLQRYTREESAKQATAVRELVNRDFVGKSTYQEDVRGLERRFEAIINPQNGSIATQIANYKTAVDGRFTDISSLLSGKANQSDFQRVKETSQLYERILGNTENGIADKVARMAMTNQLFQVEVSKNEGLKTVQRQLADSWSVQNINSAGDLISGINLGANGHNRFVGKLTHITGETLIDKAVIKSAMVDKLKTANFEAGSVTTIVLDAEAVTAEKLKVDQAFFNKLVANEAYLSQLFAKQAFINRVQSVAIDASQVRSGILSGDRIYGGTIRGASIYGGTLTGHTQIQLGSYGSFDTVNGGLQINVPRNYNAKDGLGVQFIGSYGRGENVPYGLFVYKDSDFTRGNTATPTTEFLLTVEGYIKANGIGWMRTGKGSINGGTTATIGFWNSNNVSLDFGGSGNDIYYSYNGKAYSLWTIVNKHFSDRRLKENIVNCKHKALDYIHQFQFKEYDWKKQEDRQKQAHTKIGLIAQEVKAVDPTLVYENGDTLNLDNLRLTNIALKAIQELALENKILTQRLENLENERRTA*	hallmark_hmm	common_virus	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0046	cloud	direct	high	4466	1.0	GCA_001560895.1_00065
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	53443	53643	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	34992	35192	GCA_001560895_1_1_61	GCA_001560895_1_1_61	+	2167922	.	.	hypothetical protein	MNAEQLNQALQMTISEMSTASTNSMITSNLLSIQLNEQVAENQRLQALVDELEALLDEQTKPAEGE*	.	hypothetical_protein	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0047	cloud	direct	high	200	0.995	GCA_001560895.1_00066
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	53646	54281	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	35195	35830	GCA_001560895_1_1_62	GCA_001560895_1_1_62	+	2167922	.	PF07104.11	Protein of unknown function (DUF1366)	MAINGYNLSTRPYLRISGSNVETVVEIQLSEGNRYSTNSRSFPGDRTNESEDVLIQAVLDILKAELDPGSAIVKTQAQLEQAEQQIVHNKSEQDRLAQVIKQTEENEKVNQKVIHVLVLNSVMSKNIEYGTTYKDLVELIPLAEVGKTYLPHDLITIEDPEHVEVNGEGKRILVQLNKEFTYNGEPVSEFVTNGTLEQNGTGVAWKFEGKE*	hhsuite_tools	hypothetical_protein	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0048	cloud	direct	high	635	0.998	GCA_001560895.1_00067
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	54291	54569	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	35840	36118	GCA_001560895_1_1_63	GCA_001560895_1_1_63	+	2167922	.	PFAM:PF04531.12	holin	MPGYERFLVQIFITLIPVIGLYFSMKDKATKQENRLTILEKDIENLNEFKTSANKRLDNHDEQNKAILVLAEQVKSLGEDVRELKNLIQNKQ*	phrogs_hmm	hypothetical_protein	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0049	shell	direct	high	278	0.996	GCA_001560895.1_00068
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	54584	54862	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	36133	36411	GCA_001560895_1_1_64	GCA_001560895_1_1_64	+	2167922	.	PFAM:PF04531.12	Phage_holin_1	MINWKVRFNLKNKTFLLRVAFALALPILAYFNLKLEDLVSWGVILDLLGKFFANPYLVGLTIVNILNIIPDPTTKGLTDSKQALEYENPKED*	common_virus_hmm	common_virus	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0050	cloud	direct	high	278	0.996	GCA_001560895.1_00069
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	54866	55831	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	36415	37380	GCA_001560895_1_1_65	GCA_001560895_1_1_65	+	2167922	.	COG5263	Glucan-binding domain (YG repeat)  [Carbohydrate transport and metabolism]. 	MDIDTSRLRTDLPQVGEQPYRQIHAHSTGNPNSTAQNEADYHMRRPVDSGFFSHVVGNGRVMQTWYTDMGAYDVGGGWNVEGYGQVELIESHSTKEEFMRDYKLYVELLRNLADEAGIPKTLDSDSLAGIKTHQYCTYNQPRNASDHVDPYPYLAKWGISREQFKKDIEGGLSEAGWKRNSTGWWWEESDGSYPTNSWKQINNEWFYFDERGYCLINRWFNDGKDWFYLDKRGAMVTGWMFLNHRWYFFKSDGRMATGWVKYRETWYFMEEKDGYMLSKQFIKSGDGWYYLKANGELHTDPAFKTEPDGLITIVDKPKEEK*	mmseqs_cdd	nonviral_gene	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0051	cloud	direct	high	965	0.999	GCA_001560895.1_00070
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	55924	56115	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	37473	37664	GCA_001560895_1_1_66	GCA_001560895_1_1_66	-	2167922	.	.	hypothetical protein	MSVDIKAIRWLLDNATAYAISKNCGVSIQAVDKYKNGVSDIMNMRLKHAISMTSYAHTLQEKQ*	.	hypothetical_protein	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0052	cloud	direct	high	191	0.995	GCA_001560895.1_00071
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	56693	57160	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	38242	38709	GCA_001560895_1_1_67	GCA_001560895_1_1_67	+	2167922	.	COG0590	tRNA(Arg) A34 adenosine deaminase TadA [Translation, ribosomal structure and biogenesis]. 	MDYTLEEKEIFMREALREAEIALEHDEIPIGCVIVKDGEIIGRGHNAREELQRAVMHAEIMAIENANLNEESWRLLDCTLFVTIEPCVMCSGAIGLARIPNVVYGAKNQKFGAAGSLYDILTDERLNHRVEVEIGILEDECAAIMQDFFRNRRKK*	mmseqs_cdd	nonviral_gene	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0053	persistent	direct	high	467	0.998	GCA_001560895.1_00072
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	57347	57790	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	38896	39339	GCA_001560895_1_1_68	GCA_001560895_1_1_68	+	2167922	.	PRK13956	dUTP diphosphatase. 	MKIRGFELVSTFTDENLLPKRETAHAAGYDLKVAVRTVIAPGEIVLVPTGVKAYMQPTEVLYLYDRSSNPRKKGLVLINSVGVIDGDYYGNPGNEGHIFAQMKNITDQEVVLEVGERVVQAVFAPFLIADGDAADGVRTGGFGSTGH*	mmseqs_cdd	nonviral_gene	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0054	persistent	direct	high	443	0.998	GCA_001560895.1_00074
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	57735	58307	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	39284	39856	GCA_001560895_1_1_69	GCA_001560895_1_1_69	+	2167922	.	pfam00300	Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	MEMRQTACGLVDLDRLGTRMKIIFVRHGEPDYRELEERSYTGFGIDLAPLSEKGRQQAQELSKDHFLSSAEIIVSSAVTRALETASYVACATGLPLRVEPLLHEWQVYESGTDNFEKARTMFLENNGELLPNSPIQYETATEMKSRFLECMSKYREHQTVVVVAHRMLMRQFVPNEKIDFCQVIECELEI*	mmseqs_cdd	nonviral_gene	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0055	persistent	direct	moderate	515	0.899	GCA_001560895.1_00075
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	58489	59682	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	40038	41231	GCA_001560895_1_1_70	GCA_001560895_1_1_70	+	2167922	.	PDB:3BH0_A	Helicase-ATPase	MKLAEVTSINVNRTKTEMEEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQVGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRAEVERIHPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGFLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELGLTGEIRRVNRIEQRINEAAKLGFTKIYVPKNSLTGITPPKEIQVIGVTTIQEVLKKVFA*	rep_hall_hmm	common_virus	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0056	persistent	direct	high	1193	0.999	GCA_001560895.1_00076
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	59755	60252	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	41304	41801	GCA_001560895_1_1_71	GCA_001560895_1_1_71	+	2167922	.	cd03379	Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity.  Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.	MSYFEQFMQANQAYVALHGQLNLPLKPKTRVAIVTCMDSRLHVAQALGLALGDAHILRNAGGRVTEDMIRSLVISQQQMGTREIVVLHHTDCGAQTFENGPFQEYLKEELGVDVSDQDFLPFQDIEESVREDMQALIESPLIPDDVIISGAIYDVDTGSMTVVEL*	mmseqs_cdd	nonviral_gene	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0057	persistent	direct	high	497	0.998	GCA_001560895.1_00077
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	60277	61092	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	41826	42641	GCA_001560895_1_1_72	GCA_001560895_1_1_72	+	2167922	.	COG2339	Membrane proteinase PrsW, cleaves anti-sigma factor RsiW, M82 family [Signal transduction mechanisms]. 	MKKNSILFIFILLLCIGLQYETIYYTDGSMSGAEYGLMGVSIFLALFYMIPALYFLFRIGKKWELPKNALILSLLGGMFLSGWLSSFTNTYIHDLLGVLFPDSAFLNAFESAIVAPLVEEPLKLLPLVFVLALVPVRKLKSLFLLGIASGLGFQMIEDIGYIRTDLPEGFDFTISRILERIISGIASHWTFSGLAVVGFYLLYRAYKGQKVGKKQGIIFLSLALGTHFLFNSPFVELETELPLAIPVVTAITLYGFYQAYRFVEKHNELMN*	mmseqs_cdd	nonviral_gene	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0058	persistent	direct	high	815	0.999	GCA_001560895.1_00078
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	61238	62206	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	42787	43755	GCA_001560895_1_1_73	GCA_001560895_1_1_73	+	2167922	.	PRK02269	ribose-phosphate diphosphokinase. 	MSFSDLKLFALSSNKELAERVAQEIGIELGKSSVRQFSDGEIQVNIEESIRGKHVFILQSTSSPVNDNLLEILIMVDALKRASAESVNVVMPYYGYARQDRKARAREPITSKLVANMLEVAGVDRLLTIDLHAAQIQGFFDIPVDHLMGAPLIADYFERRGMVGSDYVVVSPDHGGVTRARKLAEFLKTSIAIIDKRRSVDKMNTSEVMNIIGKVEGKTCILIDDMIDTAGTICHAADALAEAGAVEVYASCTHPVLSGPAMDNIQKSAIKKLVVLDTIYLPEERLIDKIEQISIAHLLGDAIVRIHEKRPLSPLFSIEKKI*	mmseqs_cdd	nonviral_gene	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0059	persistent	direct	high	968	0.999	GCA_001560895.1_00079
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	62327	63262	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	43876	44811	GCA_001560895_1_1_74	GCA_001560895_1_1_74	+	2167922	.	PFAM:PF04754.11	transposase	MILRHPGISPTNDLVAKKIFSNPEITCQFIRDMLDLPAKNVTILEGSNIHVLPSLPYSAQDFYTSIDVLAELDNGTQVIIEIQVHHQNFFINRLWAYLCSQVNQNLEKIRQREGDTHQSYKHIAPVYAIAIVDSNYFSDDLAFHSFSMREDTTGEVLTITNNGQENHLVKMAFLELRKYRETSKDKVRKPWLEFFGNKPFTQEPERAISQADQLLDYKSWSEEDRKMFSQLRMREEQALLAQGYALETARAEGIEQGLERGLERGRAEGLERGKVEGSLSMLLNLVRQHLLTSEVASQQLGMTVAEFEALL*	phrogs_hmm	hypothetical_protein	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0060	persistent	direct	high	935	0.999	GCA_001560895.1_00080
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	63471	63728	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	45020	45277	GCA_001560895_1_1_75	GCA_001560895_1_1_75	+	2167922	.	.	hypothetical protein	MFSQLRMREEQALLAQDYALETARAKGIEQGIEQGLERGLERGKVEGREEGKLFAFLDMVRQGLLTAEVASEQLGMTVAEFETLL*	.	hypothetical_protein	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0061	shell	direct	high	257	0.996	GCA_001560895.1_00081
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	63769	64062	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	45318	45611	GCA_001560895_1_1_76	GCA_001560895_1_1_76	+	2167922	.	.	hypothetical protein	MAFLELKKYRETSKDEVRKLWLEFFGNKPFTQEPERAISRADQLLDYKSWSEEDRKMFSQLRMREEQALLAHNYALERAEEKGLERGRPEGIEEGEK*	.	hypothetical_protein	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0062	cloud	ambiguous	low	125	0.425	GCA_001560895.1_00082
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	64342	65016	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	45891	46565	GCA_001560895_1_1_77	GCA_001560895_1_1_77	+	2167922	.	NF040523	amylase-binding adhesin AbpA. AbpA, an adhesin of oral streptococci, binds the host salivary protein alpha-amylase, contributing to colonization. Its C-terminal motif for cell wall attachment, LPKTxAVK-COOH, is recognized and processed by a dedicated B-type sortase.	MKKVLLTSVAALAVFSAVAPVFAQGENPNASNQLLQKKYVSERDIADEANTQVAAHESEIRAEAERQFAQQGGQTVAAAEKALQDFLDSGYNGHDFSDKKAALEANIAAAKSNQKFEDIYNTVRNRYVQKLQEQYRAAAQKQGNYWNDATGVEDNKPNDVRKSEDQANQTGKTAQNGQTAPSATPEPGKPGAVEQAKKAEAAAKQAGATAKAGQKALPKTHASK*	mmseqs_cdd	nonviral_gene	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0063	cloud	direct	high	674	0.999	GCA_001560895.1_00083
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	65102	65932	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	46651	47481	GCA_001560895_1_1_78	GCA_001560895_1_1_78	+	2167922	.	NF040525	class B sortase, LPKTxAVK-specific. This branch of the class B sortase family is found in multiple species of Streptococcus and Gemella. It processes target proteins that end with the motif LPKTxAVK-COOH, which differ from most sortase recognition sites in lacking an additional C-terminal transmembrane helix. Substrates of this sortase include the amylase-binding adhesin AbpA, as well of other proteins with similar N-terminal and C-terminal domains but unrelated central regions.	MSRRSTKNKSPMKKIIASLVAVAIVALGGLFLYKTFLAPTDQASETKVAQTTQKIDTTSAEEKEYLKNKFSGLLNTNSDTIAYVYAPGTELDEPVVQTTDNSTYLDKRFDGGHEPYMGTVFMDTDNKKDFSDRLTWLFGHARGSKVGDHRMFNDVNYYSRQDYFDEHPYVVIETPERKYYYEAVAMIIVPEETAFYRTSFDDDKDFQTQLTTIYETAEVKKPNVKVSAKDKYLVLSTCREEDETIRANLYLRQIPDSEMSEFVKQHKDQLTYKPTR*	mmseqs_cdd	nonviral_gene	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0064	cloud	direct	high	830	0.999	GCA_001560895.1_00084
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	66129	68798	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	47678	50347	GCA_001560895_1_1_79	GCA_001560895_1_1_79	+	2167922	.	CDD:cd08642	DNA-Polymerase-I	MVFFGAFLYNGCMDKKKLLLIDGSSVAFRAFFALYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVEPSHILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADDIIGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEKMGLTPTQFIDLKALMGDKSDNIPGVTKIGEKTGIKLLLEHGSLEGIYENIDGMKASKMKENLINDREQAFLSKTLATIDTKAPIEIGLEDLVYSGPDVESLGKFYDEMGFKQLKQALNVSSADVSESLDFTIVDQVSQDMLSEESIFHFELFGENYHTDDLVGFAWSCGDKLYATDKLELLQEPIFKDFLEKTPLRVYDFKKAKVLLNRFGVDLQAPAFDSRLAKYLLSTVEDNEIATIVSLYGQTYLVDDETFYGKGVKKAIPEREKFLEHLARKLAVLVETDPVLLGKLSENGQLELLYDMEQPLAFVLAKMEIAGITVKKETLLEMQAENELVIEKLTQEIYELAGEEFNINSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILVDGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTANDRRNAKAVNFGVVYGISDFGLSNNLGISRKEAKAYIDTYFDRFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELAEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK*	rep_hall_hmm	common_virus	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0065	persistent	direct	high	2669	1.0	GCA_001560895.1_00085
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	68883	69320	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	50432	50869	GCA_001560895_1_1_80	GCA_001560895_1_1_80	+	2167922	.	COG1832	Predicted CoA-binding protein [General function prediction only]. 	MSQEFINPSDGVIRQYLATSKTLAVVGLSDREETTSNRVTKEMQARGYKIIPVNPKAAGGEILGEKAYASLAEIPFPVDIVNVYRRSEFLPDVARDFLKADAKIFWAQLGLESLEAEEILRAGGCDDIVMNRCIKREHTRLIGEA*	mmseqs_cdd	nonviral_gene	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0066	persistent	direct	high	437	0.998	GCA_001560895.1_00086
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	CDS	69352	70362	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	50901	51911	GCA_001560895_1_1_81	GCA_001560895_1_1_81	-	2167922	.	PF03601.14	Conserved hypothetical protein 698	MSFLSKNGAGILACLLISIVSWYLGGFFPVIGAPVFAIFIGMLLHPFLSSYKQLDAGLSFSSKKLLQYAVILLGFGLNISQVFAVGQSSLPVILSTISIALIIAYFFQRFFALDTKLATLVGVGSSICGGSAIAATAPVIDAKEKEVAQAISVIFFFNVLAALIFPTLGTWLHLSNEGFALFAGTAVNDTSSVTAAASAWDSLYQSNTLESATIVKLTRTLAIIPITLFLSYWQSRQQENKQSLQLKKVFPLFILYFILASLLTTLLTSLGVSSSFFTPLKELSKFLIVMAMSAIGLKTNLVTMIKSSGKSIVLGAICWIAIILTSLGVQTLIGIF*	hhsuite_tools	nonviral_gene	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_CDS_0067	persistent	direct	high	1010	0.999	GCA_001560895.1_00087
GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote	cenote	tRNA	20038	20111	GCA_001560895.1	CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895.1_CP014326.1	GCA_001560895.1|CP014326.1	GCA_001560895_1_1	GCA_001560895_1_1@C2	1587	1660	tRNA-Asn	tRNA-Asn	+	2167922	.	tRNAscan-SE score: 70.2	Asn	NA	tRNAscan-SE	.	C2	51911	18452	70363	GCA_001560895.1|CP014326.1@region_18453_70363@tool_cenote_tRNA_0001	.	.	.	.	.	.