core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_001570845.1|BCSL01000009.1@region_66198_75772@tool_cenote	cenote	CDS	66197	66685	GCA_001570845.1	BCSL01000009.1	GCA_001570845.1|BCSL01000009.1	GCA_001570845.1_BCSL01000009.1	GCA_001570845.1|BCSL01000009.1	GCA_001570845_1_9	GCA_001570845_1_9@C3	1	489	GCA_001570845_1_9_67	GCA_001570845_1_9_67	+	100381	.	pfam20026	Domain of unknown function (DUF6434). This domain of unknown function is found in uncharacterized proteins from bacteria and eukaryotes. Proteins containing this domain also contain zinc finger C2H2-type domains. There are three conserved motifs: TxI/V, FxF and RxFF, and a conserved W or Y residue at the C-terminal.	MLDVRPGAARRLGVRATGGKDLLTRRIAAALDGALFDEPPAPARSAGAQLAGPLTLQTVIPRGQRCSQVVRAWFVEQVGAHFSFDAEMRAFFAGTDGTHTMQDALDHYRSTRGRDAKPIDSQFEYNRFTRAWHETHPTGTRDNARRAWRDYRERPVDQRGRA*	mmseqs_cdd	nonviral_gene	C3	9575	66197	75772	GCA_001570845.1|BCSL01000009.1@region_66198_75772@tool_cenote_CDS_0001	persistent	direct	high	488	0.998	GCA_001570845.1_00985
GCA_001570845.1|BCSL01000009.1@region_66198_75772@tool_cenote	cenote	CDS	67100	67567	GCA_001570845.1	BCSL01000009.1	GCA_001570845.1|BCSL01000009.1	GCA_001570845.1_BCSL01000009.1	GCA_001570845.1|BCSL01000009.1	GCA_001570845_1_9	GCA_001570845_1_9@C3	904	1371	GCA_001570845_1_9_68	GCA_001570845_1_9_68	+	100381	.	.	hypothetical protein	MYVALAAEFQGFCRDLHDDMAFELAAYVDSFSQASGSFNAMLHANFVRSRKLDQGNANAGNMGSDFQLLGLALWPGLRARKPTKVSGWNKAVEHLNEVRNGVAHSDKDKIAKAHADEPLILKNWKRKRQVLDKLAQEMDALATDYMNTLTGRAPW*	.	hypothetical_protein	C3	9575	66197	75772	GCA_001570845.1|BCSL01000009.1@region_66198_75772@tool_cenote_CDS_0002	cloud	direct	high	467	0.998	GCA_001570845.1_00986
GCA_001570845.1|BCSL01000009.1@region_66198_75772@tool_cenote	cenote	CDS	67581	67760	GCA_001570845.1	BCSL01000009.1	GCA_001570845.1|BCSL01000009.1	GCA_001570845.1_BCSL01000009.1	GCA_001570845.1|BCSL01000009.1	GCA_001570845_1_9	GCA_001570845_1_9@C3	1385	1564	GCA_001570845_1_9_69	GCA_001570845_1_9_69	+	100381	.	.	hypothetical protein	MTSRRSYKVGDRVLAPFGGGRARGQVTELKNHRVYVSLRLEGADDFLRSAYRADELELA*	.	hypothetical_protein	C3	9575	66197	75772	GCA_001570845.1|BCSL01000009.1@region_66198_75772@tool_cenote_CDS_0003	cloud	direct	high	179	0.994	GCA_001570845.1_00987
GCA_001570845.1|BCSL01000009.1@region_66198_75772@tool_cenote	cenote	CDS	68665	69054	GCA_001570845.1	BCSL01000009.1	GCA_001570845.1|BCSL01000009.1	GCA_001570845.1_BCSL01000009.1	GCA_001570845.1|BCSL01000009.1	GCA_001570845_1_9	GCA_001570845_1_9@C3	2469	2858	GCA_001570845_1_9_70	GCA_001570845_1_9_70	-	100381	.	PFAM:PF09355.9	head-to-tail-adaptor	MILNTADLPTSVQSHELVATLVAGANARALRIAPCLAEDGRDAARAEARLTLTGAVQRWAEAGAGAIQQVTAGPFGQTLDTRQRTGFNFWPSEIEVLQSLCAAESTGAFGVDTAPGWHTPTSHPFLTGG*	hallmark_hmm	common_virus	C3	9575	66197	75772	GCA_001570845.1|BCSL01000009.1@region_66198_75772@tool_cenote_CDS_0004	cloud	direct	high	389	0.997	GCA_001570845.1_00989
GCA_001570845.1|BCSL01000009.1@region_66198_75772@tool_cenote	cenote	CDS	69054	69902	GCA_001570845.1	BCSL01000009.1	GCA_001570845.1|BCSL01000009.1	GCA_001570845.1_BCSL01000009.1	GCA_001570845.1|BCSL01000009.1	GCA_001570845_1_9	GCA_001570845_1_9@C3	2858	3706	GCA_001570845_1_9_71	GCA_001570845_1_9_71	-	100381	.	CDD:pfam05065	Major-Capsid-protein	MATETTNTSSKAWSPDVTAFAASEVIGDALVLQASTVAGRIEGDEPVLRVAYVDDDAAEFVAEGVEIPEADPVLSEVTVATGKVAQLVRVSAEQYAQNGAAAMLSESVRRAVIKRADTAFLNQAAPLAPAMTPAAGLLNIEDIIDGGAVAADLDGLIDLAAQIGANGGTPSHIILSPTAWASLRKFKTGTGSAQNLLGAGTTDATMSLLGLPVLVTPAMTGDNGLILDRSAVVSAVGDVKVATSSEAYFSSDSVGVRATFRFGQNVVHPDRVGVFTVTAPAA*	hallmark_hmm	common_virus	C3	9575	66197	75772	GCA_001570845.1|BCSL01000009.1@region_66198_75772@tool_cenote_CDS_0005	cloud	direct	high	848	0.999	GCA_001570845.1_00990
GCA_001570845.1|BCSL01000009.1@region_66198_75772@tool_cenote	cenote	CDS	70073	70507	GCA_001570845.1	BCSL01000009.1	GCA_001570845.1|BCSL01000009.1	GCA_001570845.1_BCSL01000009.1	GCA_001570845.1|BCSL01000009.1	GCA_001570845_1_9	GCA_001570845_1_9@C3	3877	4311	GCA_001570845_1_9_72	GCA_001570845_1_9_72	-	100381	.	.	hypothetical protein	MTDDTTTEAHEPTEPTEAPADDQAQPENKAGKEAAKYRTRLRETEAERDALAEQVTALRRAAVDDRVKAHKVPTEGFWASGVTLEELLDEDGKLDDEKVKAAADQAVETLGLERIGTRGPYVPSEGRSTNPRPSKSWEAAFGGK*	.	hypothetical_protein	C3	9575	66197	75772	GCA_001570845.1|BCSL01000009.1@region_66198_75772@tool_cenote_CDS_0006	cloud	direct	high	434	0.998	GCA_001570845.1_00991
GCA_001570845.1|BCSL01000009.1@region_66198_75772@tool_cenote	cenote	CDS	70510	70782	GCA_001570845.1	BCSL01000009.1	GCA_001570845.1|BCSL01000009.1	GCA_001570845.1_BCSL01000009.1	GCA_001570845.1|BCSL01000009.1	GCA_001570845_1_9	GCA_001570845_1_9@C3	4314	4586	GCA_001570845_1_9_73	GCA_001570845_1_9_73	-	100381	.	.	hypothetical protein	MTDPNVTAGRILALRAAAADGPATVHQLIQDHLSAYDADDARLILAAALQTMSTYVVGPAVAQSDDPGAYKQQFRTAADRIAAGPIEKEK*	.	hypothetical_protein	C3	9575	66197	75772	GCA_001570845.1|BCSL01000009.1@region_66198_75772@tool_cenote_CDS_0007	cloud	direct	high	272	0.996	GCA_001570845.1_00992
GCA_001570845.1|BCSL01000009.1@region_66198_75772@tool_cenote	cenote	CDS	70779	70937	GCA_001570845.1	BCSL01000009.1	GCA_001570845.1|BCSL01000009.1	GCA_001570845.1_BCSL01000009.1	GCA_001570845.1|BCSL01000009.1	GCA_001570845_1_9	GCA_001570845_1_9@C3	4583	4741	GCA_001570845_1_9_74	GCA_001570845_1_9_74	-	100381	.	.	hypothetical protein	MIREPNDVSFLARRDGGAVVMRLNKENYRMNPREALRLADELVDAAETKETP*	.	hypothetical_protein	C3	9575	66197	75772	GCA_001570845.1|BCSL01000009.1@region_66198_75772@tool_cenote_CDS_0008	cloud	direct	high	158	0.994	GCA_001570845.1_00993
GCA_001570845.1|BCSL01000009.1@region_66198_75772@tool_cenote	cenote	CDS	70934	71215	GCA_001570845.1	BCSL01000009.1	GCA_001570845.1|BCSL01000009.1	GCA_001570845.1_BCSL01000009.1	GCA_001570845.1|BCSL01000009.1	GCA_001570845_1_9	GCA_001570845_1_9@C3	4738	5019	GCA_001570845_1_9_75	GCA_001570845_1_9_75	-	100381	.	pfam02467	Transcription factor WhiB. WhiB is a putative transcription factor in Actinobacteria, required for differentiation and sporulation.	MNPLSELLAGRDRWTGAACIGQWDKFDPPGEREDDSTFLGRVQAAQRVCGGCPILAQCRDFAGNARPRERAGIWGGVPYDSNGRPVRIPKENK*	mmseqs_cdd	common_virus	C3	9575	66197	75772	GCA_001570845.1|BCSL01000009.1@region_66198_75772@tool_cenote_CDS_0009	cloud	direct	high	281	0.996	GCA_001570845.1_00994
GCA_001570845.1|BCSL01000009.1@region_66198_75772@tool_cenote	cenote	CDS	71212	71820	GCA_001570845.1	BCSL01000009.1	GCA_001570845.1|BCSL01000009.1	GCA_001570845.1_BCSL01000009.1	GCA_001570845.1|BCSL01000009.1	GCA_001570845_1_9	GCA_001570845_1_9@C3	5016	5624	GCA_001570845_1_9_76	GCA_001570845_1_9_76	-	100381	.	PFAM:PF09681.9	phage-replisome-organiser	MTWAKFGAHFFDDLVNFDFPEDLDDACQLTHTQAVHFVYSTESYDCSFPKKKLARFATSARAQEAGNALVAAGVWEVVGTRVRLLHHREEIRQSLAAQNAKRERDRVNAAKKRERTHKVLESVETAQTQNPSKVANDVADESAATHSFIHSSSHSNEDKAQEGVGTVRTSPSSWPCPEPDCSVVLTERTASRHDCRSWRESA*	rep_hall_hmm	common_virus	C3	9575	66197	75772	GCA_001570845.1|BCSL01000009.1@region_66198_75772@tool_cenote_CDS_0010	cloud	direct	high	608	0.998	GCA_001570845.1_00995
GCA_001570845.1|BCSL01000009.1@region_66198_75772@tool_cenote	cenote	CDS	71820	72119	GCA_001570845.1	BCSL01000009.1	GCA_001570845.1|BCSL01000009.1	GCA_001570845.1_BCSL01000009.1	GCA_001570845.1|BCSL01000009.1	GCA_001570845_1_9	GCA_001570845_1_9@C3	5624	5923	GCA_001570845_1_9_77	GCA_001570845_1_9_77	-	100381	.	.	hypothetical protein	MTDHLEQIHEDGPEEWREHACGVMDLLAAEGRPFDSMTLTELGVPEPHHPGQWGALFRVYSTRGLIEPLGFEYSRRPTRSGGICRTWVGTAKARRKDAA*	.	hypothetical_protein	C3	9575	66197	75772	GCA_001570845.1|BCSL01000009.1@region_66198_75772@tool_cenote_CDS_0011	cloud	direct	high	299	0.997	GCA_001570845.1_00996
GCA_001570845.1|BCSL01000009.1@region_66198_75772@tool_cenote	cenote	CDS	72116	72718	GCA_001570845.1	BCSL01000009.1	GCA_001570845.1|BCSL01000009.1	GCA_001570845.1_BCSL01000009.1	GCA_001570845.1|BCSL01000009.1	GCA_001570845_1_9	GCA_001570845_1_9@C3	5920	6522	GCA_001570845_1_9_78	GCA_001570845_1_9_78	-	100381	.	.	hypothetical protein	MTRMTPAKFVAENKNAPGGGVAAPASTEGVRMPTQPNQEDMMTKSIPSRPWLDDATAKHLTDTDVATLDADFARWSEDGLIAGTELVDYVRDCARDQARVRRIMGPHDVPLPEFATVHTGAPWEVVDDGTDCVRHLDAIYADHKGLNASLEVDQYAVSSRMDLRVRIGEGMAETPADLTRWALDLLALAGTWTEILEEHS*	.	hypothetical_protein	C3	9575	66197	75772	GCA_001570845.1|BCSL01000009.1@region_66198_75772@tool_cenote_CDS_0012	cloud	direct	high	602	0.998	GCA_001570845.1_00997
GCA_001570845.1|BCSL01000009.1@region_66198_75772@tool_cenote	cenote	CDS	72715	72897	GCA_001570845.1	BCSL01000009.1	GCA_001570845.1|BCSL01000009.1	GCA_001570845.1_BCSL01000009.1	GCA_001570845.1|BCSL01000009.1	GCA_001570845_1_9	GCA_001570845_1_9@C3	6519	6701	GCA_001570845_1_9_79	GCA_001570845_1_9_79	-	100381	.	COG3311	Predicted DNA-binding transcriptional regulator AlpA [Transcription, Mobilome: prophages, transposons]. 	MAPTLLNVEEVAAMLRKTPASFRWMIQNGTAPKGAKIGGRLYWRESDVLAWIDAQFEKAS*	mmseqs_cdd	nonviral_gene	C3	9575	66197	75772	GCA_001570845.1|BCSL01000009.1@region_66198_75772@tool_cenote_CDS_0013	cloud	direct	high	182	0.995	GCA_001570845.1_00998
GCA_001570845.1|BCSL01000009.1@region_66198_75772@tool_cenote	cenote	CDS	73121	73510	GCA_001570845.1	BCSL01000009.1	GCA_001570845.1|BCSL01000009.1	GCA_001570845.1_BCSL01000009.1	GCA_001570845.1|BCSL01000009.1	GCA_001570845_1_9	GCA_001570845_1_9@C3	6925	7314	GCA_001570845_1_9_80	GCA_001570845_1_9_80	+	100381	.	.	hypothetical protein	MVTKTEKGRRPILASELFAYARIYGVSVDQLLVPEGEIRFVYKVLEAADKLREAETELLDMGSEYEHRRDRLNYALSELEENVAPEDIPETFIVRLGHAASLRSRDITKVFADRLDREAEAFLGSHAEE*	.	hypothetical_protein	C3	9575	66197	75772	GCA_001570845.1|BCSL01000009.1@region_66198_75772@tool_cenote_CDS_0014	cloud	direct	high	389	0.997	GCA_001570845.1_00999
GCA_001570845.1|BCSL01000009.1@region_66198_75772@tool_cenote	cenote	CDS	73497	74666	GCA_001570845.1	BCSL01000009.1	GCA_001570845.1|BCSL01000009.1	GCA_001570845.1_BCSL01000009.1	GCA_001570845.1|BCSL01000009.1	GCA_001570845_1_9	GCA_001570845_1_9@C3	7301	8470	GCA_001570845_1_9_81	GCA_001570845_1_9_81	+	100381	.	PDB:1Z19_B	Integrase	MPRNRRSGVEDLWTSKRTGEPTRLHGQGKRWRARYVDDSGREHTRRFPRKRDAEAWLDEVTATLVVGNYVPPDRGRMTLSTYYADWATRQVWESSTVKAMDLAAGGVTFGDVPFSDLRPSHIQTWIKSMQDRGLAPGTIRTRYNNVRTVLKAAHRDRYLGADPSEGVPLPRRRRADMAMTIPTDKEVRTLLEAAEEVFAPFVALCAFAGLRLGEAAALQTGDVDFLRGVIRVRRQVQRANGGQVELRLPKYGSERDVAVPRALTDMLAAHTTRVLADGEPEAWLWPGERGNPWHQNTVAYYWRKARQKAGLEYRLHDLRHFYASGLIASGCDVVTVQRALGHRSATVTLNTYSHLWPDAEDRTRAASKSLMASVLETPAYPLRTGGPVS*	common_virus_hmm	common_virus	C3	9575	66197	75772	GCA_001570845.1|BCSL01000009.1@region_66198_75772@tool_cenote_CDS_0015	cloud	direct	high	1169	0.999	GCA_001570845.1_01000
GCA_001570845.1|BCSL01000009.1@region_66198_75772@tool_cenote	cenote	CDS	74692	75771	GCA_001570845.1	BCSL01000009.1	GCA_001570845.1|BCSL01000009.1	GCA_001570845.1_BCSL01000009.1	GCA_001570845.1|BCSL01000009.1	GCA_001570845_1_9	GCA_001570845_1_9@C3	8496	9575	GCA_001570845_1_9_82	GCA_001570845_1_9_82	-	100381	.	COG0012	Ribosome-binding ATPase YchF, GTP1/OBG family [Translation, ribosomal structure and biogenesis]. 	MSLTLGIVGLPNVGKSTLFNALTNNDVLAANYPFATIEPNVGVVDLPDPRLDRLAEIFGSERILPAVVSFVDIAGIVKGASTGEGMGNKFLANIREADAICQVVRVFDDPDVIHVDGKVDPMADIEVIATELILADLETIEKALPRIEKDARKDKSLVAQLEEIRKAQAVLEDGRTLFKAQDEIDRGLLRDLHLMTAKPFLYVFNADESVLTSDERKAELSAAVAPADAVFLDAKVEAELQELDEEDAMELLESIGQTEPGLNALARAGFHTLGLQTYLTAGPKESRAWTIRKGDTAPKAAGVIHTDFEKGFIKAEIVSFDDLDAAGSMAAAKAAGKVRMEGKDYVMADGDVVEFRFNV*	mmseqs_cdd	nonviral_gene	C3	9575	66197	75772	GCA_001570845.1|BCSL01000009.1@region_66198_75772@tool_cenote_CDS_0016	persistent	direct	high	1079	0.999	GCA_001570845.1_01001