core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_001571065.1|BCSW01000108.1@region_1_3120@tool_cenote	cenote	CDS	1	978	GCA_001571065.1	BCSW01000108.1	GCA_001571065.1|BCSW01000108.1	GCA_001571065.1_BCSW01000108.1	GCA_001571065.1|BCSW01000108.1	GCA_001571065_1_108	GCA_001571065_1_108	2	979	GCA_001571065_1_108_1	GCA_001571065_1_108_1	+	3120	.	PDB:1NLF_A	Regulatory-protein-rep	PEGFGLLTGPPKAGKSWAVMGLGLALACGGRAFGKIDVGKARPVLYMALEDGERRVQGRARKLLHGEPIPARMNFVTDVPPLLVLEVLDAWLDANTGQAPLVILDTLGRVMPSASPGESAYERDYRIGARLKRYTDRDPGATLLVVHHVRKAEGADWMDSTSGTNGLNGAADFTVNLSRARNEDTGLIRVTGRDVIEGEYSVTVTDGEWVLNGDGLDDAAQAAQNGKATQNLGDFAASIIRYVTEHGPVTPKQVEAAVQLPGTTVRSYLTRAVDAGRLQKHGRGLYGAATSATSATTGGLDNPLDALVADVAPPPNVLQFGRNPS*	common_virus_hmm	common_virus	NaN	.	0	3120	GCA_001571065.1|BCSW01000108.1@region_1_3120@tool_cenote_CDS_0001	cloud	direct	moderate	920	0.941	GCA_001571065.1_03330
GCA_001571065.1|BCSW01000108.1@region_1_3120@tool_cenote	cenote	CDS	975	1142	GCA_001571065.1	BCSW01000108.1	GCA_001571065.1|BCSW01000108.1	GCA_001571065.1_BCSW01000108.1	GCA_001571065.1|BCSW01000108.1	GCA_001571065_1_108	GCA_001571065_1_108	976	1143	GCA_001571065_1_108_2	GCA_001571065_1_108_2	+	3120	.	.	hypothetical protein	MRIRSTSRVTVHRSADPRRPIELKFAGLIAQMTRTEARQLADALHDTADQETTND*	.	hypothetical_protein	NaN	.	0	3120	GCA_001571065.1|BCSW01000108.1@region_1_3120@tool_cenote_CDS_0002	cloud	direct	high	167	0.994	GCA_001571065.1_03331
GCA_001571065.1|BCSW01000108.1@region_1_3120@tool_cenote	cenote	CDS	1135	1398	GCA_001571065.1	BCSW01000108.1	GCA_001571065.1|BCSW01000108.1	GCA_001571065.1_BCSW01000108.1	GCA_001571065.1|BCSW01000108.1	GCA_001571065_1_108	GCA_001571065_1_108	1136	1399	GCA_001571065_1_108_3	GCA_001571065_1_108_3	+	3120	.	.	hypothetical protein	MTEPGDHLTITAADNRRAAALVAHHARRDFDGINAILGETTEAKRATELIFAVLDLYQELVPAVHTPLGLQFLSSYLHKVAGLEDPA*	.	hypothetical_protein	NaN	.	0	3120	GCA_001571065.1|BCSW01000108.1@region_1_3120@tool_cenote_CDS_0003	cloud	direct	high	263	0.996	GCA_001571065.1_03332
GCA_001571065.1|BCSW01000108.1@region_1_3120@tool_cenote	cenote	CDS	1395	1820	GCA_001571065.1	BCSW01000108.1	GCA_001571065.1|BCSW01000108.1	GCA_001571065.1_BCSW01000108.1	GCA_001571065.1|BCSW01000108.1	GCA_001571065_1_108	GCA_001571065_1_108	1396	1821	GCA_001571065_1_108_4	GCA_001571065_1_108_4	+	3120	.	PFAM:PF05766.11	HNH-endonuclease	MTLRPCLDCGTPVDTPRCSECAPPIERERHNRKSSPRARGYDSQWDRLSKRARKLQPFCADCGATRDLQTDHSEEAWRRKAAGLPVTLATVAVVCGPCNRERGRQRPTQDPGGIPPGDSDPDPRREAKFASHIVGSPGGGG*	phrogs_hmm	hypothetical_protein	NaN	.	0	3120	GCA_001571065.1|BCSW01000108.1@region_1_3120@tool_cenote_CDS_0004	cloud	ambiguous	low	5	0.012	GCA_001571065.1_03332
GCA_001571065.1|BCSW01000108.1@region_1_3120@tool_cenote	cenote	CDS	1828	2046	GCA_001571065.1	BCSW01000108.1	GCA_001571065.1|BCSW01000108.1	GCA_001571065.1_BCSW01000108.1	GCA_001571065.1|BCSW01000108.1	GCA_001571065_1_108	GCA_001571065_1_108	1829	2047	GCA_001571065_1_108_5	GCA_001571065_1_108_5	-	3120	.	.	hypothetical protein	MRFQITPRVGDPFIGSAVKIEDGGVIYYHDDSGRHYLAPGEWTRADEVGGGGKAAAPAIATPGTERIADIQF*	.	hypothetical_protein	NaN	.	0	3120	GCA_001571065.1|BCSW01000108.1@region_1_3120@tool_cenote_CDS_0005	cloud	direct	high	218	0.995	GCA_001571065.1_03333
GCA_001571065.1|BCSW01000108.1@region_1_3120@tool_cenote	cenote	CDS	2061	3119	GCA_001571065.1	BCSW01000108.1	GCA_001571065.1|BCSW01000108.1	GCA_001571065.1_BCSW01000108.1	GCA_001571065.1|BCSW01000108.1	GCA_001571065_1_108	GCA_001571065_1_108	2062	3120	GCA_001571065_1_108_6	GCA_001571065_1_108_6	+	3120	.	PFAM:PF03354.15	Large-Terminase	MSAIKAGPKGKITADPLGFKGWPRDRAKRRERFVREFVNVPKGVGALKPLRLRPWQTEIVRGAYADGVRTAVVSLPRANGKSALAAALAVAELWVGPPSAEILVVASDERQAKIVLNLARRMIELSPELAERCHVYRDHIAVPENDAVMRALPADPAALHGWDPSLLIVDELHVVTPDVWEAVTSVVGKRPESLVLAISTPSTTPDCIMWSLVEHGRKGDDPSFFLREFMAPDGCATDDRKAWAAANPALGDFLSEDGLASAQRTLREPVFRQLRLGQWVSGSESWLPFGVFDQRADEDRRVGKRDRVVLAFDGSASGDSTALIGCTVDDPHLFVVGLWENPGDPRWRVPRGE	hallmark_hmm	common_virus	NaN	.	0	3120	GCA_001571065.1|BCSW01000108.1@region_1_3120@tool_cenote_CDS_0006	cloud	ambiguous	low	213	0.201	GCA_001571065.1_03334
GCA_001571065.1|BCSW01000110.1@region_1_2880@tool_cenote	cenote	CDS	1	978	GCA_001571065.1	BCSW01000110.1	GCA_001571065.1|BCSW01000110.1	GCA_001571065.1_BCSW01000110.1	GCA_001571065.1|BCSW01000110.1	GCA_001571065_1_110	GCA_001571065_1_110	2	979	GCA_001571065_1_110_1	GCA_001571065_1_110_1	+	2880	.	PDB:1NLF_A	Regulatory-protein-rep	PEGFGLLTGPPKAGKSWAVMGLGLAVAAGGKAFGHIDVGNPRPVLYLALEDGERRVQARARKLLHDQPIPPRMNFATDVPPLLVLEVLDAWLDANAGQAPLVILDTLGRVMPPSTPGESAYERDYRIGAKLKRYVDRDPGATLLVVHHVRKAEGADWMDSTSGTNGLNGAADFTINLSRARNEDTGLIRVTGRDVIEGEYSVTVTDGEWVLNGDSLDDAAQAAQNGKATQNLGDFAASIIRYVTEHGPVTPKQVEAAVQLPGTTVRSYLTRAVDAGRLQKHGRGLYGAATSATSATTGGLDVPLDALVADVAPPPNVLQFGRNPS*	common_virus_hmm	common_virus	NaN	.	0	2880	GCA_001571065.1|BCSW01000110.1@region_1_2880@tool_cenote_CDS_0001	cloud	direct	moderate	920	0.941	GCA_001571065.1_03337
GCA_001571065.1|BCSW01000110.1@region_1_2880@tool_cenote	cenote	CDS	975	1142	GCA_001571065.1	BCSW01000110.1	GCA_001571065.1|BCSW01000110.1	GCA_001571065.1_BCSW01000110.1	GCA_001571065.1|BCSW01000110.1	GCA_001571065_1_110	GCA_001571065_1_110	976	1143	GCA_001571065_1_110_2	GCA_001571065_1_110_2	+	2880	.	.	hypothetical protein	MRIRSTSRVTVHLSTDPRRPIELKFAGLLAQMTRTEARQLADAIHDTADQETTND*	.	hypothetical_protein	NaN	.	0	2880	GCA_001571065.1|BCSW01000110.1@region_1_2880@tool_cenote_CDS_0002	cloud	direct	high	167	0.994	GCA_001571065.1_03338
GCA_001571065.1|BCSW01000110.1@region_1_2880@tool_cenote	cenote	CDS	1135	1398	GCA_001571065.1	BCSW01000110.1	GCA_001571065.1|BCSW01000110.1	GCA_001571065.1_BCSW01000110.1	GCA_001571065.1|BCSW01000110.1	GCA_001571065_1_110	GCA_001571065_1_110	1136	1399	GCA_001571065_1_110_3	GCA_001571065_1_110_3	+	2880	.	.	hypothetical protein	MTEPGEHLSITAADNRRAAALVAHHGRRDFAGINAILAETTEAKRATELIFAVLDLYQELVPAVHTPLGLQFLSSYLHRVAGLEDPA*	.	hypothetical_protein	NaN	.	0	2880	GCA_001571065.1|BCSW01000110.1@region_1_2880@tool_cenote_CDS_0003	cloud	direct	high	263	0.996	GCA_001571065.1_03339
GCA_001571065.1|BCSW01000110.1@region_1_2880@tool_cenote	cenote	CDS	1395	1823	GCA_001571065.1	BCSW01000110.1	GCA_001571065.1|BCSW01000110.1	GCA_001571065.1_BCSW01000110.1	GCA_001571065.1|BCSW01000110.1	GCA_001571065_1_110	GCA_001571065_1_110	1396	1824	GCA_001571065_1_110_4	GCA_001571065_1_110_4	+	2880	.	PFAM:PF05766.11	HNH-endonuclease	MTLRPCIDCGTPVDTPRCPECGPHVERERHNRKSSPRARGYDSQWDRLSKRARKLQPFCADCGTPHDLQLDHSEEAWRRKALGRAIRLQDVTVVCGPCNRARGAQRPNQTPGGIPPGESDPDPRREAKFPSHIVGSSVQGVG*	phrogs_hmm	hypothetical_protein	NaN	.	0	2880	GCA_001571065.1|BCSW01000110.1@region_1_2880@tool_cenote_CDS_0004	cloud	ambiguous	low	5	0.012	GCA_001571065.1_03339
GCA_001571065.1|BCSW01000110.1@region_1_2880@tool_cenote	cenote	CDS	1824	2879	GCA_001571065.1	BCSW01000110.1	GCA_001571065.1|BCSW01000110.1	GCA_001571065.1_BCSW01000110.1	GCA_001571065.1|BCSW01000110.1	GCA_001571065_1_110	GCA_001571065_1_110	1825	2880	GCA_001571065_1_110_5	GCA_001571065_1_110_5	+	2880	.	PFAM:PF03354.15	Large-Terminase	MAIKAGPKSKIEAAPLSFKGWPTDRARRRERFVKTYVNVPKGVGALKPLRLRPWQTEIVRGAYADGVRTAVVSLPRANGKSALAAALAVAELFVGPPSAEVLVVASDERQARIVLNLARRMIELSPELAERAHVYRDRIEVPENDASIRALPADPAALHGFDPSLLVIDELHVVTPAVWEAASSVVGKRPESLTLAISTPSTTPDCVMWSLVEHGRRGDDPAFYLKEFSAPEGCATDDRKAWAAANPALGDFLSEDGLASAQRTLREPVFRQLRLGQWVSGSESWLPFGLFDQRADEDRRVGKRDRVVLAFDGSASGDSTALIGCTVDDPHLFVVGLWENPGDPRWRVPRGD	hallmark_hmm	common_virus	NaN	.	0	2880	GCA_001571065.1|BCSW01000110.1@region_1_2880@tool_cenote_CDS_0005	.	unmatched_CDS	none	0	0	.
GCA_001571065.1|BCSW01000085.1@region_1_6339@tool_cenote	cenote	CDS	1	164	GCA_001571065.1	BCSW01000085.1	GCA_001571065.1|BCSW01000085.1	GCA_001571065.1_BCSW01000085.1	GCA_001571065.1|BCSW01000085.1	GCA_001571065_1_85	GCA_001571065_1_85	1	165	GCA_001571065_1_85_1	GCA_001571065_1_85_1	-	6339	.	PRK03635	ArgP/LysG family DNA-binding transcriptional regulator. 	MNPLQLDQLRTLVAVVDLGSFEAAAAHLHITQSAVSQRIRALEESAGRILVRRDR	mmseqs_cdd	nonviral_gene	NaN	.	0	6339	GCA_001571065.1|BCSW01000085.1@region_1_6339@tool_cenote_CDS_0001	.	unmatched_CDS	none	0	0	.
GCA_001571065.1|BCSW01000085.1@region_1_6339@tool_cenote	cenote	CDS	257	850	GCA_001571065.1	BCSW01000085.1	GCA_001571065.1|BCSW01000085.1	GCA_001571065.1_BCSW01000085.1	GCA_001571065.1|BCSW01000085.1	GCA_001571065_1_85	GCA_001571065_1_85	258	851	GCA_001571065_1_85_2	GCA_001571065_1_85_2	+	6339	.	COG1279	Arginine exporter protein ArgO [Amino acid transport and metabolism]. 	MGAGIGLGLIAAVGAQNAYVLQRSIRGDVSMVPIVVFCVLSEAALILLGVAGVGALIETAPGALTVMTWIGVAFLVAYGTFAAVRAIRPGEGLRADGSGRVPSTMGAVAACAAFTWLNPHAYLDCVVFLGTIANQQGGDLRWVFAAGAFLAGTVWFSLIGFGGKALRGLFAKPGAWRVLDGAIAVMMFVLAAGLIRG*	mmseqs_cdd	nonviral_gene	NaN	.	0	6339	GCA_001571065.1|BCSW01000085.1@region_1_6339@tool_cenote_CDS_0002	persistent	direct	high	593	0.998	GCA_001571065.1_03209
GCA_001571065.1|BCSW01000085.1@region_1_6339@tool_cenote	cenote	CDS	1166	1798	GCA_001571065.1	BCSW01000085.1	GCA_001571065.1|BCSW01000085.1	GCA_001571065.1_BCSW01000085.1	GCA_001571065.1|BCSW01000085.1	GCA_001571065_1_85	GCA_001571065_1_85	1167	1799	GCA_001571065_1_85_3	GCA_001571065_1_85_3	-	6339	.	PRK05618	50S ribosomal protein L25/general stress protein Ctc; Reviewed	MAKEINNLKTVTRTEFGKGSARRARREGQVPAVLYGHHTEPRHLLLNALEFAAVLRAHGTNSLLTLDIEGEEQLALPKQIDVHPLTRVIEHTDLLVVKKGEKVVVEVAVILTGEAAPGTLVTTDADYIEIEVEATDIPEEFELSLSGVEAGTQFTAADITLPSGATLVSDPETLLVNVIEAPSESDLESDEESAPQGEAAEDAAKAAEED*	mmseqs_cdd	nonviral_gene	NaN	.	0	6339	GCA_001571065.1|BCSW01000085.1@region_1_6339@tool_cenote_CDS_0003	persistent	direct	high	632	0.998	GCA_001571065.1_03210
GCA_001571065.1|BCSW01000085.1@region_1_6339@tool_cenote	cenote	CDS	2095	2436	GCA_001571065.1	BCSW01000085.1	GCA_001571065.1|BCSW01000085.1	GCA_001571065.1_BCSW01000085.1	GCA_001571065.1|BCSW01000085.1	GCA_001571065_1_85	GCA_001571065_1_85	2096	2437	GCA_001571065_1_85_4	GCA_001571065_1_85_4	-	6339	.	cd03034	Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.	MGATIYHNPRCSKSRQALELLRERGVEPTIIKYLDTPPTVEELRTLIADAALTVRQAVRVKEAEFTELGLIDASDDELLAAMVAHPRLIERPFVVTDKGTRLARPTAEVEEIL*	mmseqs_cdd	nonviral_gene	NaN	.	0	6339	GCA_001571065.1|BCSW01000085.1@region_1_6339@tool_cenote_CDS_0004	persistent	direct	high	341	0.997	GCA_001571065.1_03211
GCA_001571065.1|BCSW01000085.1@region_1_6339@tool_cenote	cenote	CDS	2444	3421	GCA_001571065.1	BCSW01000085.1	GCA_001571065.1|BCSW01000085.1	GCA_001571065.1_BCSW01000085.1	GCA_001571065.1|BCSW01000085.1	GCA_001571065_1_85	GCA_001571065_1_85	2445	3422	GCA_001571065_1_85_5	GCA_001571065_1_85_5	-	6339	.	CDD:cd08053	head-to-tail-adaptor	MSDWIANQKNLMFFAGRAHPELSDQVAAELGVEVTPQTARDFANGEIFVRFEESVRGCDAFVMQSAPAPLNKWIMEQLIMIDALKRGSAKRITAVLPFYPYARQDKKHRGREPISARLIADLLKTAGADRIITVDLHTDQIQGFFDGPVDHMHAQGQLSDYVRQHYGTDNIVVVSPDAGRVKVGEKWADALDGAPLAFVHKTRDPNVPNQVKSNRVVGDVEGKTCVLMDDMIDTGGTIAGAVKVLKDAGAGDVIIATTHGIFSDPAAERLATCGAKEVITTDTLPIPPEKRFENLTVLSIAPLLARTIHEVFENGSVTSLFNGSA*	hallmark_hmm	common_virus	NaN	.	0	6339	GCA_001571065.1|BCSW01000085.1@region_1_6339@tool_cenote_CDS_0005	persistent	direct	high	977	0.999	GCA_001571065.1_03212
GCA_001571065.1|BCSW01000085.1@region_1_6339@tool_cenote	cenote	CDS	3418	4899	GCA_001571065.1	BCSW01000085.1	GCA_001571065.1|BCSW01000085.1	GCA_001571065.1_BCSW01000085.1	GCA_001571065.1|BCSW01000085.1	GCA_001571065_1_85	GCA_001571065_1_85	3419	4900	GCA_001571065_1_85_6	GCA_001571065_1_85_6	-	6339	.	PRK14352	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU. 	MTTPQTDRTQTAVIVLAAGSGTRMKSATPKMLHRVCGRTMLGHALHAAAGIEPDAIVVVVGHQREQVSAAVDELSSELGVPVSTAVQEEQKGTGDAVAAGMSGLPADFSGTVLVTTSDIPLLDSETLREVVSRHDMRPRAAVTVLTSTAPDPTGYGRIVRNDDGEVLRIVEHKDASEDERAINEVNSGIYAFDAQVLRDKLGQLSTDNSQGELYLTDVIQLARQANGLIRGHRVEDADLVAGVNDRVQLAALASEMNRRLCESAMRAGATIVDPSSTWLDVGVEIGRDVTILPGAHLAGATVVHDGATIGPDTTLQDTTVGEGASVVRSHAVSATVGDGAEVGPFAYLRPGADLGANTRIGTFVEVKKSTIGANTKVPHLTYVGDATIGEHTNIGASSVFVNYDGVNKNRTVIGDHCRTGSDTMFVAPVTVGDGAYSGAGTVIKDDVPPGALAVSGGRQRNIDDWVIKNRPDSGSAEAARRARNDSQKDGLTQ*	mmseqs_cdd	nonviral_gene	NaN	.	0	6339	GCA_001571065.1|BCSW01000085.1@region_1_6339@tool_cenote_CDS_0006	persistent	direct	high	1481	0.999	GCA_001571065.1_03213
GCA_001571065.1|BCSW01000085.1@region_1_6339@tool_cenote	cenote	CDS	5049	6338	GCA_001571065.1	BCSW01000085.1	GCA_001571065.1|BCSW01000085.1	GCA_001571065.1_BCSW01000085.1	GCA_001571065.1|BCSW01000085.1	GCA_001571065_1_85	GCA_001571065_1_85	5050	6339	GCA_001571065_1_85_7	GCA_001571065_1_85_7	+	6339	.	cd06173	Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	MSVLRRQLADTRPLRQPDFRRLWLANIVTVIGAQLSLVAVPQQVFEITRSSAYVGLTGVFALVPLIVFGLWGGALADAFDRRTLLMITTTGLIATAALFWLQAAAGNQNVWLVMGLLAVQQAFFAVNQPTRSAIIPRLVPSDQLASASALNMTVMQFGAIVGPLSAGILIPVLGLESLYLLDSVALLVTLYAVYRLPPQPVAGERPSVGLRSVIDGFAYLATRRILLASFLVDIIAMVFGMPRALFPQIATESFGDPPTGGTALGLLFAAMSVGAVLGGVFSGWIPRVRRQGLAVLVCVALWGLAMVAFGVFVAAVSPEGSAWWLWLALAALAFGGAVDMVSAAFRQAILLESATDEMRGRLQGVFIVVVAGGPRIGDVAHGVAAASVGTAVAAAGGGVLVVVGVVICAVAFPAFLRYTVRSAVERGAKG	mmseqs_cdd	nonviral_gene	NaN	.	0	6339	GCA_001571065.1|BCSW01000085.1@region_1_6339@tool_cenote_CDS_0007	.	unmatched_CDS	none	0	0	.