core_seqid core_source core_type core_start core_end core_bax_acc core_contig_acc core_bax_acc|contig_acc core_bax_acc_contig_acc cenote_input_name cenote_contig cenote_phage_region_id cenote_gene_start cenote_gene_stop cenote_gene_name original_cenote_gene_name cenote_gene_orient cenote_contig_length cenote_dtr_seq cenote_evidence_accession cenote_evidence_description cenote_translation cenote_Evidence_source cenote_vscore_category cenote_chunk_name cenote_chunk_length cenote_chunk_start cenote_chunk_stop UNI_lookup_ID pangenome_partition pangenome_method pangenome_confidence pangenome_overlap_length pangenome_overlap_fraction pangenome_matching_locus_tag GCA_001656115.1|LXHW01000016.1@region_1_1064@tool_cenote cenote CDS 1 1062 GCA_001656115.1 LXHW01000016.1 GCA_001656115.1|LXHW01000016.1 GCA_001656115.1_LXHW01000016.1 GCA_001656115.1|LXHW01000016.1 GCA_001656115_1_11 GCA_001656115_1_11 2 1063 GCA_001656115_1_11_1 GCA_001656115_1_11_1 - 1064 . PFAM:PF06820.11 tail-fibre AQTTKITKLKKGTADDDAVTIGQLKSAKPNLTEGAGISITNTNGDLSVNAANGTVTTPTYTIGVKTATLDSTGSNGTKFSVQGGQTNDNNMVTAKNLAGYLNTINQTAESANTTAESAKEKATTAESTANQAKSAADTASQTATEAKTAAEKSAGEAKTAQQKATEAANQAATSVNQATAAKEQAEQAKTAATASANEAQTAKNEAKKSADEATAAKTAAQNSASEATEAKNKAESAENTANEAKKTAGTALQTFKVKKVNADGNDADDSETNAITVGKEDGKNGQVNTLKLKGKDGLTVATSKADGTVTFGLNQDSGLTIGNSTLNSGGLTVNKPTTNEQIQVGADGVKFAGT hallmark_hmm common_virus NaN . 0 1064 GCA_001656115.1|LXHW01000016.1@region_1_1064@tool_cenote_CDS_0001 . unmatched_CDS none 0 0 . GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 1 378 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 2 379 GCA_001656115_1_16_1 GCA_001656115_1_16_1 + 218171 . PDB:5EMI_A Cell-wall-hydrolase-autolysin AESSTPSRLGNTKNNSTRTPANTNIGITENYTVKAGESLTMLSNRFGVAIGDLAAANGLASNANLRIGQTLKVPKLTTTYTVKAGDGLIALARRYGISTQELAKMNNLEPTADLRIGQVLTVPNK* common_virus_hmm common_virus C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0001 persistent direct moderate 353 0.934 GCA_001656115.1_01200 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 539 2371 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 540 2372 GCA_001656115_1_16_2 GCA_001656115_1_16_2 - 218171 . COG1274 Phosphoenolpyruvate carboxykinase, GTP-dependent [Energy production and conversion]. MTAKITAPDFVRHQALIHWVAEIAALTKPAAIEWCDGSEEENQRLIDLMIKNGTMIKLNEDKHPNSYLAFSDPTDVARVEDRTYICSKEEIDAGATNNWVEPSQMRTKLNNLFDGCMAGRTMYVVPFSMGPLGSHIAHIGIEITDSPYVVVSMRKMARMGKEVYDVLGTDGEYVPCVHTVGSPLTEGQKDVAWPCNDDKYIVHFPETREIWSYGSGYGGNALLGKKCLALRIASAMGREQGWLAEHMLILGVTNPQGKKHYIAAAFPSACGKTNFAMLIPPAGYEGWKVETVGDDIAWIKPSEDGKLYAINPEAGFFGVAPGTNTKTNSNCMSTLGSDVIYTNVAVTDDGEVWWEGKTKEAPNNLTNWKREPHTGEERAAHANARFTVSAKQCPSIDPQWENPEGVPISAFIFGGRRADTVPLVSEAFDWVDGVYKAATMGSETTAAATGQQGVVRRDPFAMLPFAGYNMADYFNHWLQMGENLGKKAETAGNQLPKMFKVNWFRRDENGDFVWPGFGQNMRVLQWIIERCEGTANAVRTPIGLVPTYDDINWDQSDFTKAQFELVTSQDKDAWIKELESHAELFDKLGERMPAALKAHNAKLKADIEQV* mmseqs_cdd nonviral_gene C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0002 persistent direct high 1832 0.999 GCA_001656115.1_01201 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 2669 4087 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 2670 4088 GCA_001656115_1_16_3 GCA_001656115_1_16_3 + 218171 . PDB:3BH0_A Helicase-ATPase MAKSKSSYICQNCGAIYGKWAGQCTDCGEWNTLVEAPNTSLPHHHKSKTTTAPRKTANYAGAVSAVMTLDHVGVTLETRMPTGIGEFDRVLGGGLVAGSVVLIGGDPGIGKSTILLQTAINMASSNSLAGSALYITGEESLSQVAMRAVRLGLPTDRLRVLAETNVETICMALTAEQPAIAVIDSIQTLFTEAIQSAPGGVAQIRESAAVLTRYAKQTGTALFLVGHVTKEGALAGPRVLEHMVDTVLYFEGESDSRFRMIRAIKNRFGAVNELGIFGMTDTGLKEVANPSAIFLSRYDKPIAGSVVMVSREGTRPLLVEVQALVDTAQAQPRRMALGLDYQRLSMLLAVMHRHGGIHTSGMDVYVNVVGGVKVMETGSDLAVLLACASSIREKALPNRLCVFGELGLSGEIRPVPNGQERLKEAMKHGFTHAIVPRANAPAANHPQFKNIQIIAVDRLDEAIYQAFEITAG* rep_hall_hmm common_virus C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0003 persistent direct high 1418 0.999 GCA_001656115.1_01202 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 4129 4848 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 4130 4849 GCA_001656115_1_16_4 GCA_001656115_1_16_4 - 218171 . COG1118 ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]. MSIKIQNIHKTFGDFVALGDISIDISTGELTTLLGPSGCGKTTLLRIIAGLENADNGRIYFDSIDVTDIPVQHRGIGFVFQQYALFRHQTVAQNIAFGLTLLPRNTRPSANTIDRRVDELLDLVQLSHTKNRYPHELSGGQRQRVALARALATKPKLLLLDEPFGALDAKVRKSLRDSLKDIQREIGITSILVTHDQEEAQAISDKIVIMNHGQIEQIGTPSKLFAQPSSDFVVDFLGL* mmseqs_cdd nonviral_gene C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0004 persistent direct high 719 0.999 GCA_001656115.1_01203 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 4941 5780 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 4942 5781 GCA_001656115_1_16_5 GCA_001656115_1_16_5 - 218171 . COG4208 ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]. MANTSSYSYQKNPATRDKPWVKWGLIGIAVVFMGIMLVVPLVSVFYEALKEGWQAYQEALLEPDALASIKLTLITAVIILPINTIIGVALAYLITRHQFRGKFVITTLLDLPFAVSPVVAGLMFVLVFGANTRLGSYLESMGIQVIFATTGIVLATLFVTFAFIARELIPLMQAQGDSEEQTALTLGANGWQMFWKVTLPNIKWALLYGIILTNARAMGEFGAVSVVSGHIRGETNTVPLMIEIAYNEYAFTLAFALSSLLALLALVTLVAQGLMSHKK* mmseqs_cdd nonviral_gene C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0005 persistent direct high 839 0.999 GCA_001656115.1_01204 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 5832 6710 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 5833 6711 GCA_001656115_1_16_6 GCA_001656115_1_16_6 - 218171 . TIGR02139 sulfate ABC transporter, permease protein CysT. This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions] MPNQPMPLKNRARRVMPFFGLSMGISIFALGLLVILPFLMMILTTLQMGFGDIMRTIREPQVFAAIKLSLSMAMLATLTNLIFGTLVAWVLVRYEFWGKSFLNALVDLPFALPTAVTGIALATLYAPNGLFGQWFTRLGILLFDEPIKIAFTPIGIWLALVVVSFPFIVRAVQPVLAELSVEFEEAAAVMGAGRLTTFCRVILPEITPAMLIGAGMMFARATGEYGSVIFIAGNIPMQSEILPLIIVSKLEQFDVAGAACVSLFMLLISLVVLFTINFIQWKLSARLGAKTN* mmseqs_cdd nonviral_gene C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0006 persistent direct high 878 0.999 GCA_001656115.1_01205 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 7047 7475 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 7048 7476 GCA_001656115_1_16_7 GCA_001656115_1_16_7 + 218171 . . hypothetical protein MMKNKWMHGLAILALSLPTVTYAKTAAPKSPEAPKESLTQEEQMAIDFCDFSAYGVMHIAAEHQSGVTKSETLTNHDERMAKLRDIDPETATMLDQYWKGVIDRIFQESVQKTDAEKQAFVMGVGESSFYSCLDQVLKTPKN* . hypothetical_protein C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0007 persistent direct high 428 0.998 GCA_001656115.1_01206 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 7506 8681 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 7507 8682 GCA_001656115_1_16_8 GCA_001656115_1_16_8 + 218171 . PDB:1OYW_A ATP-dependent-DNA-helicase MTETTVKNFDDLPLSEPILKAVQALKFNQLTPIQAQILPHTLANQDAIGQAQTGTGKTATFLITIIESLLKRPFQADEIRYLGEPRALVLAPTRELAQQILADCRELTRFSQLYNLCITGGADFDKQLEQLHKRPLDILIGTPGRIIDWVNKGELFLDRIEVFVLDEADRMLDMGFIPDIKRIVRHMPSNTERQSLLFSATFNQDVMNLAYRWLHQPAFVEIAPESKTNQAIDQQFYLVTEREKISALKQILADDSVKKTIIFANRKDQVKRLYDYLRRHHKVTMLSGDVAQQKRERYLQRFKDGEVNVLVATDVAGRGIHVDDVTHVINYTLPDMPDDYVHRIGRTGRAGLSGVSISFVGENDAFNLPALERHVDQKFKLNQFEFLDEHK* common_virus_hmm common_virus C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0008 persistent direct high 1175 0.999 GCA_001656115.1_01207 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 8695 9870 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 8696 9871 GCA_001656115_1_16_9 GCA_001656115_1_16_9 + 218171 . COG0635 Coproporphyrinogen III oxidase or related Fe-S oxidoreductase [Coenzyme transport and metabolism]. MYPDLLDPAHIPLSLYIHMPWCIKKCPYCDFNSHALPSQAPFESYIEALLSDAVSQQSLVSNRQIDTVFIGGGTPSLLPIESFKRLFDGLRLIYDFAPTCEITLEANPGTLEHSPFDEYLTVGINRLSIGVQSFDHNALTALGRIHNPDQASNAIRAARIAGFDRVNADLMYGLPNQNSSKAVNDIQTAIDAGATHLSWYQLTIEPNTTFYRTPPQLPDEEIMAEIETLGQSVLTKHGFYNYEVSAWHGPNDAPCRHNLNYWQFGDYLAIGAGAHGKLTLKNHPNHQDGIYRYQKSRLPKDYLAFENAPKMVNFERIADENLPFEFMMNALRLKDGVSTDMFETRTGLLISTIDNEMLPLQHQGLMVLDPLRIAPTHLGFRYVNHLVSQFI* mmseqs_cdd nonviral_gene C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0009 persistent direct high 1176 1.0 GCA_001656115.1_01208 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 9965 10105 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 9966 10106 GCA_001656115_1_16_10 GCA_001656115_1_16_10 - 218171 . COG5510 Predicted small secreted protein [Function unknown]. MKKVLIASIAAVVVLTGCNAIKGLGKDVSKAGEAVSDTAQKVEKKI* mmseqs_cdd nonviral_gene C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0010 persistent direct high 140 0.993 GCA_001656115.1_01209 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 10353 10898 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 10354 10899 GCA_001656115_1_16_11 GCA_001656115_1_16_11 + 218171 . COG0219 tRNA(Leu) C34 or U34 (ribose-2'-O)-methylase TrmL, contains SPOUT domain [Translation, ribosomal structure and biogenesis]. MSQFSDALIHIVLFSPKIPNNTGSIIRLCANTGAQLHLVKPLGFELDDTRLKRAGLDYHEYATLSVHDNWQETKSALKSLGVERIVAMTTKFSRPFYEYQFGLDNDQHKVALVFGSETDGLPEEVRADIGANHWLRLPMLPDSRSLNLANSVGICLYEVWRQLGFVGDVGQSVGYHKPTSR* mmseqs_cdd nonviral_gene C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0011 persistent direct high 545 0.998 GCA_001656115.1_01210 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 11117 11326 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 11118 11327 GCA_001656115_1_16_12 GCA_001656115_1_16_12 - 218171 . 7DTR_A HTH motif, protein interaction, VIRAL MKPDIKSHNPNPTYIRTLLKKAGLSQRKAAHMLGVSERMMRYYLVHTDDPNYRPMPYAVQFCLECLAKT* hhsuite_tools hypothetical_protein C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0012 shell direct high 209 0.995 GCA_001656115.1_01211 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 11323 11505 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 11324 11506 GCA_001656115_1_16_13 GCA_001656115_1_16_13 - 218171 . . hypothetical protein MNTQTLNREIKMAELERIKLEAEKLRAETLKIQKETKYYPAVSIVIALIALIASILALLK* . hypothetical_protein C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0013 cloud direct high 182 0.995 GCA_001656115.1_01212 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 11634 11987 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 11635 11988 GCA_001656115_1_16_14 GCA_001656115_1_16_14 + 218171 . PFAM:PF12206.7 head-closure-Hc1 MKQEITQEIKQAFDGDLKDVVKDFTGRRVILSDDDWAVNDTPQVLSTINYSGRGVFTGFHAYEIDNKTIMQQDTKLICLQSELTEVPQIDDEINKMKIISISHDPAEVIFTIQLRGF* phrogs_hmm hypothetical_protein C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0014 persistent direct high 353 0.997 GCA_001656115.1_01213 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 11987 12334 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 11988 12335 GCA_001656115_1_16_15 GCA_001656115_1_16_15 + 218171 . PFAM:PF04883.11 putative-tail-component MGIKWNKKLSIDPIADKIDDIYRKFAIDCYNNVQTLSPVDTGRYRRAHHISIGERSLGEHGGGVELVLGLPKHTYPIIYIQNNLPYALRLEHGWSQQAPTGVYGNAFNSALGALG* hallmark_hmm common_virus C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0015 persistent direct high 347 0.997 GCA_001656115.1_01214 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 12331 12531 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 12332 12532 GCA_001656115_1_16_16 GCA_001656115_1_16_16 - 218171 . PFAM:PF16777.4 transcriptional-regulator MPKITSTPKTQTQIQKESNARRGVKNKAFTLKLDDIELIKSLSKRLDIPQNQLIMDAVRAYQKGLD* phrogs_hmm hypothetical_protein C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0016 shell direct high 200 0.995 GCA_001656115.1_01215 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 12773 13387 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 12774 13388 GCA_001656115_1_16_17 GCA_001656115_1_16_17 + 218171 . COG3600 Uncharacterized phage-associated protein [Mobilome: prophages, transposons]. MLYYSLAYFKSQVIITVLYEIVMIIWLFLSHFEKGVVMIKAPYNPMDVANYIVAEAIKRKKPVTHLKLQKLLYYVVAKYAKTYNTILINEDIVKWQYGPVVKSVYHYFKLHGDRIITKPIAYLESAEIFNLKFTDVDVNNAQLGNDKRLVDTVGQVLNDTDLLTAYELVERTHKEPAWRNFEPEILQAKQELSYSMTELKVANI* mmseqs_cdd nonviral_gene C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0017 shell direct moderate 503 0.818 GCA_001656115.1_01216 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 13384 14268 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 13385 14269 GCA_001656115_1_16_18 GCA_001656115_1_16_18 + 218171 . . hypothetical protein MMIQVSGDNAFIRAIIERYLQVQDTSPDKLDDLANEIVWLILKAFDNELRSSDAFNLPYKDITDSVFFDSEKRLFTGSLTTFGKNMETAIHHSFDEDRPNKHHEKKEKYVKRFMYIHGKFVEHILLAQVQKEFIQDSVRQAQETAKKAEVAAESAEEIAKIAKNNADKAEKTYNTMFANYVTILGIFTAIIVTIFGGLNVVDTVISYGNTHFSTIIFLAASVLICVVCLLYFLAKIILKLNGKDDDNQRFTLECLFGAIFITCIGLIVFAWCVSPTKTTPKIDKTTDKIEQKAD* . hypothetical_protein C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0018 shell direct high 881 0.995 GCA_001656115.1_01217 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 14336 14719 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 14337 14720 GCA_001656115_1_16_19 GCA_001656115_1_16_19 + 218171 . PDB:2L25_A tail-completion-protein MNSFHIEQTLLTHIKAWEYFDDVPLAKENRNFKPPDGIWGRVTILGGINQVRSISDKPDILQQGTLVIQLFCPQDLGTVAIKQKADSLANHLQTRRFGRLELLAPSIINAGFHDYYQINVSVAWRYY* hallmark_hmm common_virus C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0019 shell direct high 383 0.997 GCA_001656115.1_01218 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 14911 15819 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 14912 15820 GCA_001656115_1_16_20 GCA_001656115_1_16_20 + 218171 . PDB:5NGJ_B Tail-tube-protein MSSGAFVKTAYAKQIGETLPKTGWKTLPNISNGLTVATELTSSEMLSGSRMAKAGMVTSASVQGDIETELMFGAYDELLAAAFWSEWSAGASPNTLSVGATKHQFAIAKDFSDINVNHVFTGCVVSSFGLSVDTSSLIKLKFGMTGLGYQESKTASFAKSPTVQADTAKASGLSIGEIKVDGSKLDVCVESFSFELDNQTEVQKCLGDNIYGGNILAMLTNITGSMTIAYSQKAHEMISNQMTGATLSLELPIKFGNSKYVIKIPKFQVSGEIPSPSGTDLVTVDLSYTVVDESPVIERHTA* hallmark_hmm common_virus C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0020 shell direct high 908 0.999 GCA_001656115.1_01219 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 16073 16534 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 16074 16535 GCA_001656115_1_16_21 GCA_001656115_1_16_21 + 218171 . PFAM:PF08809.10 Tail-assembly-chaperone MAFDLTLLKKDAKINAKREIEFDGLELTLEIQASEAFKRAAAEVQKIANTPKKVTKDSLKRDSQDEIGEYEAMLFILGEYCISQWNVTADGEPLAVNGDNFLILLDQAFEKDKLTQFITLLFETYASLSQEFEDNKAKLVKKSMTATNGKKSG* phrogs_hmm hypothetical_protein C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0021 shell direct high 461 0.998 GCA_001656115.1_01220 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 16697 20662 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 16698 20663 GCA_001656115_1_16_22 GCA_001656115_1_16_22 + 218171 . UniProtKB:I6NKY8_9CAUD Tail-tape-measure- MFVMFVSIIKAYCQGRGCLSLFLCLMIYGLMSITKNPRLGGFIGFNGEFMSNTYRLDIQVNADSANTALGNLKEHFDKIEQSSGKAGVGIDGFSGKADKASKSSKKAGDGAKKFGDDVDGLKRKTDGLKTAFGTLKGVMFTALAVAGVGGIIQTADDMQTLTSQIKIATTSTKDYAHAMSEIERIAMGNMVSLDSVGQLYASNERSLKQLGKSQDEVIKFTENITTAMRVSGGSAESQAAALTQLGQAMASGVLRGDEFNSVAEQAPVIMELMADSLGVTTGKLRDMAKEGKLTSKVVYDALAGASASDKLAEKSKKMSTTISGAMQNIQTQWRLGVHAIMNGEGGLSSVLADGINSIALGASSFVDSLPAINQAITDTIAKAKEMGTAFLESDFGQATIQIAKDAFEQLKSAMQGVVDIAGDVKVFFEKNPELAIALASGAGAAAGAFLLFKGVLIVWTGVATLATAAGGALAAVMAVLTSPITLVIAAFAALVAAGVYVYRNWDTIKQKANDAWQSIKETWQGVGEWFGELWDKVKQTFFDWLSQMPKPVQDMVANIGEIFSTIVDVAGAVWDGIANIAKSVWHAITEFVSYAIDKIKPVIKSVLEFFKNAWNGLVSIAKTVWQAVIGVVSHVFDKISGIISTQFEAMKAIFMAGVTIFASIFNAGFEMVKNIFSTAFKVITAVLTGDMQGVKDAIKDGFQKAVDISKKLVGNIVDALKKLGKDLLQVGRDAMQGFINGISEKIDAAVSKAKEMASSVKNAITGFFDIHSPSRVMKQVGGWISEGLAIGIAYKAPIAAKEAKNLAKSVKNALESELQKTAEEIFLTKQHIAGNPYAQLTKDIAFGKYGKQDTSRLQKLAQEQILQSNILTLTQQLHEAQQNLANVGLTNIEIMQRQYDETDKSVRASLDLFEQVKKTSQELIDATNRHEATQEFESTLKDITKQMAIMGSQDPLAEFLYDLQNAEKYAYYTTEQLAELKDEMIKLQNAKDAKQASDGIKESLKDINKQLALLGSNHPLDDFFYELEQTDKYAHATTDEINELTDAIFKLQNAKDTLNAKQAFDTLMKDTALADETPAQRLQREYDEKMAVIDKYEQMHSDKLENATSLRQQITERYEQAEKDAKVKNYQEHLTAFAGFLKNTAGEQSKAYRVMFAASKAYALADVGVKMGKAVADAWADPSAVTIWQKLANVAKVSLGQGHVLSMINAISPKGFATGGYTGNMGVNQVAGVVHGQEYVLNAKATKRIGVGNLERLNRGDGIGGHVNNINVHVTVNSDGSNVQADTQMGKTMGEAMVKIARQVVIQETKQNGHLDRLYRR* hallmark_hmm common_virus C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0022 shell direct moderate 3818 0.963 GCA_001656115.1_01221 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 20734 21132 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 20735 21133 GCA_001656115_1_16_23 GCA_001656115_1_16_23 + 218171 . PFAM:PF05939.12 minor-tail-protein MGDFITFLTYIESEKLNLREKTMKTFNWDISADSSESISHNTIITAFGDGYEQAVSFGINNSRKSWQCSKTDTKAVIDEIYRFLIDTKGVEPFNFKPLTDEPSIKVRLDGEISRQKMGGDAWQIGFTLKQVF* hallmark_hmm common_virus C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0023 shell direct high 398 0.997 GCA_001656115.1_01222 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 21149 21553 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 21150 21554 GCA_001656115_1_16_24 GCA_001656115_1_16_24 - 218171 . pfam15919 HicB_like antitoxin of bacterial toxin-antitoxin system. This is a family of HicB-like antitoxins. MLYPIAILKGDDKTAHGIFFPDVPNLASACDDLQDIHKMALECLHVHFSGLVDDGEEIPLPTNFDAHTQNSQFDGMMWAWVDVDLSKYDIKSHKINITLPNHLIAKIDEKVSAHKSLYKSRSNYLAQLAMADLA* mmseqs_cdd nonviral_gene C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0024 shell direct high 404 0.998 GCA_001656115.1_01223 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 21587 21778 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 21588 21779 GCA_001656115_1_16_25 GCA_001656115_1_16_25 - 218171 . COG1724 Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family [General function prediction only]. MASSREVIKLIKADGWYRVKSNGGSHQQFKHPTKKGRVTVPHPKKDLPQPTIDSIMRQAGLSD* mmseqs_cdd nonviral_gene C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0025 shell direct high 191 0.995 GCA_001656115.1_01224 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 22004 22399 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 22005 22400 GCA_001656115_1_16_26 GCA_001656115_1_16_26 + 218171 . . hypothetical protein MSEPTLTELSRTEAQVLQSFIAQVDFWKNQHGDKASTIEITYYPDDDGFEVSNNEANNGVLKRNRTTVFRADLLAWASNQLRQLQGYDNSQTVTEFSLSYKNDRYGVRVSLASEATDKADDGADDKAEQTQ* . hypothetical_protein C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0026 persistent direct high 395 0.997 GCA_001656115.1_01225 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 22496 23164 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 22497 23165 GCA_001656115_1_16_27 GCA_001656115_1_16_27 + 218171 . PFAM:PF05100.11 minor-tail-protein- MSFNTDIQQTTVQGFITLYELDARKLGGEIYRFHGHNDGVIRWQGQDFHPIAIKADGLEMRSDGKASTPKLSIGDKINGIQGAVSALCRLYDDFARAKLTVTQTLQAYLDSHDAQNYRQQEWYIEQKVSENPSLGIVEFELSNPVDFEGQKIPVRQITTYCNEAVCGRYRGEICGYTGTARFTHDGKPTDDPSLDRCSGLLAHCKLRDNEGSFCGFPAAGLV* hallmark_hmm common_virus C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0027 shell direct high 668 0.999 GCA_001656115.1_01226 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 23161 23364 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 23162 23365 GCA_001656115_1_16_28 GCA_001656115_1_16_28 - 218171 . . hypothetical protein MADKASPQARKKATANYFDKSLARIGLVISHTEPEVLAALESIIARKGCSKAMAIKIALVEYAKTLD* . hypothetical_protein C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0028 shell direct high 203 0.995 GCA_001656115.1_01227 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 23748 24521 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 23749 24522 GCA_001656115_1_16_29 GCA_001656115_1_16_29 + 218171 . cd08073 Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) found in proteins also containing NlpC/P60 domains. This family contains bacterial MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains at the N-terminus of NlpC/P60 phage tail protein domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site. MRLTKNLQQQIITHAQDAYPNECCGLIIDEDYYPCDNVAVNPTEHFEIDPKDFAKAESIGEIQAIVHSHPNGNAEPSEIDRVQMSIHGMDWVICAFGYHAGGKEYFKPKAYQAPLLGREYHHGVQDCYSLVRDYYHRELDIHLPDFHRSDAWWEHKNHEPLYEKNFEKAGFVAVDKSVGNLQKHDVILCRVGRTHHVNHALIYLGDGKLNSEKTPDCVGNALILHHPHGGLSVREIYGENWQRRTAMVVRHGRLNNG* mmseqs_cdd common_virus C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0029 shell direct high 773 0.999 GCA_001656115.1_01229 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 24587 25219 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 24588 25220 GCA_001656115_1_16_30 GCA_001656115_1_16_30 + 218171 . PFAM:PF06805.11 tail-assembly-protein-I MKTIILHGILAKKFGKSFRLDVKTAKEACHALACQIPAFYEFMMNAEKQGIKFAIFNGEKRTQKTNIGEKQVDDITTASHIHIMPRVIGSGGKTMGWIQVVAGVALIATGVGAGIGAGLTLSAAVAANIGMIGAGAGLLLGGVSALMMPTPKLDPNNEDGNRPNNGFGGAVTTVAQGNPVPILYGEREIGGFIVSAAIYAEDKMVQGVKI* hallmark_hmm common_virus C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0030 cloud direct high 632 0.998 GCA_001656115.1_01230 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 25228 27288 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 25229 27289 GCA_001656115_1_16_31 GCA_001656115_1_16_31 + 218171 . PFAM:PF13550.5 tail-protein MKIYGAKRQKQSSRKPYIQKDTASSTNFYQALYGLSEGEIYGLVDGGKSIRLDGTPIINDNGEPNFPDVSWEFRAGSIDQEHIKGFSSVENEQSINVELRHDRPYTKAINNKQLSAVAIRLGFNALREQKDNGDVVGYRIEYAIDVQTDGGAWEMVLNTAVDDKVSQGYQRSHRIDLPKAQQGWSVRVRRLTPNRDSEMVSDSMVVSAVTEIIDAKLRYPCTALLALKYDAQTFSNIAKVAVRVRGMLIQVPTNYDPIARTYDGLWNGEFKMAYSNNPAWVFYDICTAKRYGLGDRLAGKVDKWSLYRLAQYCDEMVDDGKGGKEPRFTVNVYLQKADDAYRVLQNLSSVFRALSFWDGQSIVVDADTPKEPVYVFSNANVIGGEFSYTGTRARDRHTIVKCAYDDPDNNFETDYIYVQDEHAIAKYGINQLELNLFGCTSKGQAQRAGIWALKSEQLETETVSFSTGLDGFIPKVGEIIHVQDNNRAGRMQAGRIVATDGNRITLDRMAGKVGDTVMVGDNSAKIVQIDDTVITTDTAIGSVGQVFAISSSDVAPRAYRVMTISQNDDASFSFTALQYEIGKFTATNNIAAIPKKEVSVIKAHVLTPPNSVTLTERTRTHQGQAITTLVISWEQVTGAVAYVDKDEIDGTAGRMTVNRATQVQAVTPDKIREVGEQFRSHPKNHI* hallmark_hmm common_virus C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0031 shell direct high 2060 1.0 GCA_001656115.1_01231 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 27251 27559 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 27252 27560 GCA_001656115_1_16_32 GCA_001656115_1_16_32 + 218171 . PDB:2MXZ_A L-alanyl-D-glutamate-peptidase-endolysin MSNLDPTLKTISERSLKSLQGVHPDLVKVVLHAIKISPVDFSVMEGVRTKEHQRELVKKRASKTMNSRHLTGHAVDIVPIIGGKISWNLMIYPLPKQWHNLR* common_virus_hmm common_virus C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0032 shell direct high 308 0.997 GCA_001656115.1_01232 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 27489 27737 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 27490 27738 GCA_001656115_1_16_33 GCA_001656115_1_16_33 - 218171 . . hypothetical protein MVYLVIIFGLITMQIKLSNLSERVSVPYGLVKQIMGHRPTATDKKHYKDRLIDLPRYWHTIADCAIALAGDKSSSSMRFCHQ* . hypothetical_protein C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0033 shell direct moderate 213 0.855 GCA_001656115.1_01233 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 28115 29215 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 28116 29216 GCA_001656115_1_16_34 GCA_001656115_1_16_34 - 218171 . COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]. MRRFIKQYLTIWLDVVKDRSIFLTMVLSVVFYGFFYPFAYQAQRPADLPIVIVDEEQSPLTQAIIYTTSHTPNIHVLAVVSDFRQAQMLVQSAKADGILLLPDNLSQSIHHGQTGGVGLYLSSAYFLRTQNIGAGLASALHATIAQELGQVTQTRHKPMPELIHQSALFNPLSGYGSYIFPAVAPIIVYQTIVLGLAMLVAGYRQRLWRASACDFLAIYAVALTIGCLSCFYLFGFVFWWHDYPRGGNFWGMMLGVPIFVSCAIGVALLIASWVADGAKVGVLLIFSSVPLFMLTGLAYPLMAMPKFLQPLAHALPTTQGVQMFIQLNQMGVSIQDVWQKMAYLASVAVLCLGVAFWRLRLVNKSV* mmseqs_cdd nonviral_gene C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0034 persistent direct high 1100 0.999 GCA_001656115.1_01234 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 29215 30393 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 29216 30394 GCA_001656115_1_16_35 GCA_001656115_1_16_35 - 218171 . PF12698.7 ABC-2 family transporter protein MIVRFIRAFCQAFLRELNRLSCNRFDLAMVMIAPLVIIVLFGAMFYHGKAHHLPVALVDEDNSELSHLIYQHIHHNETVEAVLILDDIQDAHHAINRLDVGGYIHIPKDAQNRLVRGENTGIHIAYNQSFFSIGSAISSALSKSTKGGIAKFIQTKHLTGVLPHLSGNMPHVKISVLFNPNLSYEFFLEPFLVAAVLHLLLCCLVAHAIGQEFHEHSVHEWLYHSPFGALFGKISVYVLIISLWHGLWQAWLIGVRGWFVAGSLFVLIIGQLLFYLAYALFGAMVVLKTQNINKSYGILAVYGGSSMSFAGVTLPLNNASGFTQFWSQIIPFTPFARLQVEQWVIGSPFIITLAHLNSLLIFVLIFAIGSLLLLRRIKKTLIAMPNTPKDDS* hhsuite_tools hypothetical_protein C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0035 persistent direct high 1178 0.999 GCA_001656115.1_01235 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 30421 31584 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 30422 31585 GCA_001656115_1_16_36 GCA_001656115_1_16_36 - 218171 . COG1566 Multidrug resistance efflux pump [Defense mechanisms]. MTDKTDDVKPDTDGNHPKKQKPHTQAKSKPRPLALFLLLALIGSVLLVIIFGLIQSYGTPQNLPTTNAIGGTNEPPKGVIAHVRQKITRPATFSIQGRVEGETVNISTKLPSRVAAIYVKEGQAVRAGEPLVQLISPEIDAKKQQAAAMLQSALAFQSSTDRGTRQENVDTLYANWQSAKAQATLAEESYRRGEYLYQEGVISRQRRDEMRAAKQSSAQIAQAAQQQYLKAERGRTDELKSSADAQVQIARAAVAEADALDAETMLYAPIDGTVSKIYIQSSELVMPAVPVMSLLDNHPTITISVQENQYSHVHALPKLTGFIPALNKTADFKIVHTDDEGEFATIKNTRQTGGYDIHSFKTKLEPITPIEGLKVGMSVIFDITVLP* mmseqs_cdd nonviral_gene C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0036 persistent direct high 1163 0.999 GCA_001656115.1_01236 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 31631 33127 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 31632 33128 GCA_001656115_1_16_37 GCA_001656115_1_16_37 - 218171 . 3PIK_A Cation efflux system protein cusC MSIKCQLVAIDNIIKPCYDRILNFVYFSTMKMPYFLLLGLLLVQQANADYSLLDAQKQLMSSSPAIQASHALYQADVLQAESLQKLHYPRISLNAHAFALQQNSSIPLDNIKEQTAQHINTHFDHRFGNAPDGLLDALHDSTQTALDRLPDHQDVKLRHDGITPNITATMPIYTGGLISSSKNIANLQAQRGKFGLQERISLAKLNLIRHYFNVQLQKQLTDTQQNMLSAMQLHVDNAYKLEQQGFISRGQRMQFEVARNQVQRLYQSTQNQHQNSIYELAVLLGLPHIEPLSTPLFINTQHRPNWQALLKDSQNTPLNQKLKTDILLADENIALRQSTKKPKIAAVARYTLDDKPDWFAGVAVQYNLFLGIDRDKQIEAARLQKQVAKLGHEQVNEHITTTMHTAYGEMVLAQKTHALLQQNHRAAKENLRIQTLSFQEGFGTVAGVVDAQSALSQIDSETALNAYRYLLALATLLHHTGTIDDFDDYLSLDDAHKL* hhsuite_tools hypothetical_protein C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0037 persistent direct high 1496 0.999 GCA_001656115.1_01237 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 33390 37562 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 33391 37563 GCA_001656115_1_16_38 GCA_001656115_1_16_38 - 218171 . PDB:5XDR_A Replicative-polyprotein MHSTDNLPVLAKDRHYLNKLKQKVDSTTGDLKAKCKIRYDAIYKRSAEQVANRMDSIPKNLSEKLNHDLPVTAEADTLIQAIREHQVVIIAGETGSGKTTQLPKLAMMAGRGVTGQIGHTQPRRLAARSVAMRIAEELGETLGQTVSFKIRFTEEGGKHSIVKLMTDGILLAELGSDKFLANYDTIIIDEAHERSLNIDFIMGYLKRLLPKRPDLKVIITSATLDTQRFSDYFSVHGKPAPVYIVEGRSYPVEVRYRPLTDTIVSSQDDDAFDDIEDNLPRALTAAVNECFEDARAKGHPDQADILIFAATEAEIRELQEVLMLYAPAHTEILPLFARQSYGEQQKIFAPSGKGRRIIIATNVAETALTVPNIRYVIDLGFARISRYNYRSRIQRLPIEAISQAAANQRKGRCGRVASGVCIRLYSEEDFNSRPEFTEPEILRTNLASVILQMERLQLGDVNDFDFITPPDLRLVNDGRKLLIELGALDDKSFTKTRAKKGRTQLSSLTKIGQQMAKMPIDPRLARMLVAGDTFDCLADILIIVSALAVQDVRERPINKQAQADQKHALFRKDDSDFLFYLELFAALFDQHATNDNQVLGSNARRNFAKKHYLSYARIREWQKTHRQLSEMMAEMGFEINKQKNHQNGVKTDTKKGTRLSLKSGASRQKSIKQALVGAKALKNEIDHKTSIHYANIHRALLSALLSFVAHKTDTVGEYLMARSQKARIFPASTLHKKGAQWVMAFEVVETSQVYMRTLAKIEPEWIIKAAPNLLKYHYFEPHWSKKAGRVRAYAQISLFGLIVIAKELVNFEQIDLVQAREIFIRDALVANQYGMQMKFLADNANKIKDIERIEDKLRRRDLLVDEERLYQFYDAKIPNHIASRKSFEEFYHDAENKTPNFLHFSDEDVLNEAVDDNQEFPESWHLGGVRLPLSYVFDPAADDDGVTVRVPIKALAQVDPVALLWGISGWRYELVLQLLKTLPKEIRRQIVPIPDTCQKIFHQLDASSKMGLLDQLVAALKTLGVQTQAQDFAPDKVEDYLRPLICVVDDKNRVIEKSRDLPKLQARYRKTSVQSIAVEQGVHHHFPNHFNFVKNKHTSGIVMQEFSALKADKTQSAVFIATFTEINTALAEHKKGVLTLIKGRLGAKQKQLTSQIDKAFKLAFAPLGDLEKLKNIVVHATLEACLYEYGQDFDHKPVSQNGDHARAAIAGLVTQNNQWLISHLPLDEREFEYCQDLILKNFLLVGQEILRSLKEIYTAWQTARGKLLMLDQEIFGENIEDIEDQLDDLQLANFVYQTDYRHWRQYPRYLQALNIRLDRLQHNLEADLDAVYLLDTHMERLARCVKNPKFAEYRWLVEEYRINLFAQPMKTVQPVSAKRLETLWANLTTQ* common_virus_hmm common_virus C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0038 persistent direct high 4172 1.0 GCA_001656115.1_01238 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 37838 38527 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 37839 38528 GCA_001656115_1_16_39 GCA_001656115_1_16_39 + 218171 . TIGR02796 TolQ protein. TolQ is one of the essential components of the Tol-Pal system. Together with TolR, it harnesses protonmotive force to energize TolA, which spans the periplasm to reach the complex of TolB and Pal at the outer member. The tol-pal system proves to be important for maintaining outer membrane integrity. Gene pairs similar to the TolQ and TolR gene pair often number several per genome, but this model describes specificially TolQ per se, as found in tol-pal operons. A close homolog, excluded from this model, is ExbB of the ExbB/ExbD/TonB protein complex, which powers transport of siderophores and vitamin B12 across the bacterial outer membrane. The Tol-Pal system is exploited by colicin and filamentous phage DNA to enter the cell. It is also implicated in pathogenesis in several bacterial species [Transport and binding proteins, Other, Cellular processes, Pathogenesis] MNESISLISLVIEASIVVKLVMAILLLLSTISWVLIFYLGAKIGGVAKFDERFEQWFWTDEIDRQLSVVQAESERVGLELIFYTGFYDQNHTNQDFALSDDKKVQMVERRLRMALGSEQVRLEKGLSTLATIGSVSPYIGLFGTVWGIMNAFIGLGQAESVGLATVAPSIAEALIATALGLFAAIPATMAYNHFTAKSNTLYENRSLFCEGLMSALVTNLAKKNTASTL* mmseqs_cdd nonviral_gene C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0039 persistent direct high 689 0.999 GCA_001656115.1_01239 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 38552 38986 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 38553 38987 GCA_001656115_1_16_40 GCA_001656115_1_16_40 + 218171 . TIGR02801 TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score. [Transport and binding proteins, Other, Cellular processes, Pathogenesis] MVTSNRFARRQRPLNSDMNVVPYIDVMLVLLVIFIVTAPMLATGVEVSLPKEQTKPITQADKLPVIVSIQSDGNLYVSHKNAIDVPITPDKLDALLRQMHQDNANLQVMVNADADNPYSQIMHIMALIQNVGITQVSLLSESVQ* mmseqs_cdd nonviral_gene C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0040 persistent direct high 434 0.998 GCA_001656115.1_01240 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 39017 39811 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 39018 39812 GCA_001656115_1_16_41 GCA_001656115_1_16_41 + 218171 . PF06519.11 TolA C-terminal MRLSDNHPTVNFDKSALILPILASVLLHTVIIIAVAAPLITPPTKPNTAIQTALVGQEAFNSAKTALSNHHANQNKPTAANASSTITANDNAFMQAQNQNRYRPQVSTSTTTTQAYHPLPNSAPFESNSPNIQNQPTNAHAKLTKYSNNVSDLEQANHTESTPSRAQINAAISSVKHRIETIWQRYPKQPNQTITFQVNINQQGDVTSIQFGGGHPDLRESVEAAVYAAAPFYELGGMRDSIRLQFTTEQLIMDNSQTPNEPNH* hhsuite_tools hypothetical_protein C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0041 persistent direct high 794 0.999 GCA_001656115.1_01241 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 39828 41090 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 39829 41091 GCA_001656115_1_16_42 GCA_001656115_1_16_42 + 218171 . TIGR02800 tol-pal system beta propeller repeat protein TolB. Members of this protein family are the TolB periplasmic protein of Gram-negative bacteria. TolB is part of the Tol-Pal (peptidoglycan-associated lipoprotein) multiprotein complex, comprising five envelope proteins, TolQ, TolR, TolA, TolB and Pal, which form two complexes. The TolQ, TolR and TolA inner-membrane proteins interact via their transmembrane domains. The {beta}-propeller domain of the periplasmic protein TolB is responsible for its interaction with Pal. TolB also interacts with the outer-membrane peptidoglycan-associated proteins Lpp and OmpA. TolA undergoes a conformational change in response to changes in the proton-motive force, and interacts with Pal in an energy-dependent manner. The C-terminal periplasmic domain of TolA also interacts with the N-terminal domain of TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi , Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. [Transport and binding proteins, Other, Cellular processes, Pathogenesis] MKLPITKVCLALTISFAAALTHAYADDELIMISEQVAPSQYPVAVMPFSEAHQVSHYLSLAGLGATHQNLPQHTQTNHDILNNLTAWRNRGFEYIILAQSHQILGNKLTINYEIIDTANGLVSVKHTQISDNHPTSIQAAYRQISDTIYQIITGQPSDLMGKIAYVEESGSPQNKISSLKLIDPNGQLIRTLDTVNGSIITPTFSPDGLSIAYSVQTKNNLPIIYIVPVSGGTPKLITPFWGHNLAPSFSPDGGSILFSGSHENNNPNIYRLNLHTNHLDTLTTFNGAENAPNYLADASGFIYTADKGTRRQSLYRYDFGTTHSTQIASYATNPRLSPDGSKLVYLSGGQIIIANTKGRIQQSFRVLGTDVSASFSPSGTRIIYTSNQGNKNQLMIRSLSSNAIRTIPTSGTVRDPIWSK* mmseqs_cdd nonviral_gene C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0042 persistent direct high 1262 0.999 GCA_001656115.1_01242 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 41147 41359 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 41148 41360 GCA_001656115_1_16_43 GCA_001656115_1_16_43 + 218171 . . hypothetical protein MVGMTIGLISLSGCQYIQATKSPIPIIIHSHKKLPSQPKPTPTDAMPTKNPPISPQTQKPNTIFILEDWF* . hypothetical_protein C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0043 persistent ambiguous low 3 0.014 GCA_001656115.1_01243 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 41356 44913 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 41357 44914 GCA_001656115_1_16_44 GCA_001656115_1_16_44 - 218171 . PDB:5JXR_A Chromatin-remodeling-complex-ATPase MMIDTLKPKLNLPTKANFKTTLPLLGGADLSFWLALAAKSEERLIVMIANHQNELNQLDTELSFFGIDAHVFPDWEILAYDQLSVHQDIISERIALLTRMPTTGVLLVSTQTLMQRIAPPSWLIGQHFDLAVGDKFDINEQRLRLTKAGYVQTENVFEPGEFAVRGSIVDIFAVGQSLPFRLDLFDDDIETIKFFDPDSQRTLSDNDLAQLKKDAQAGMNTHHAQKLPSSAKITEFRLLPAREFPLEEGREMFRQNFASLFPNASARKIEFYNDVMAAIAPQGIEFYAPLFFELDAWMKTGNLFSYLPDDALVVSHDNLSACHDEYYQQIQARHHSRAHDKSLPIMPPDYLFLANNEFHQALKAYPRVVINTNHDTASIGAMVSLPPPILPINHQAAEPLSELLSFIKSGQVPILLVAESAGRREIILELLKDKVTVKVVDNYQEFINNLDDFNADCIALSVAPIERGLWLRDETGGLCIISETQIFGRQVLQTRRRRQSSVSQAFLIKSVTELTEGALVVHLEHGIGRYQGLVVLDVGEGEQEFIHLKYADDASIYVPITNLALIGRYSGSDLQTVSLSKIGSGKWEKAKLKALEQIHDVAAELLNVQARRNAKSGISFDIDMSQYELFASQFAFEETIDQAEAIHAVMHDMKQNKPMDRLICGDVGFGKTEVAMRAAFIAVQAGYQVAVLVPTTLLAGQHEDSFLNRFADWPIKIESLSRFGNKKHQDAILAGLADGTVDIVIGTHKLIQDDIKFKQLGLMIIDEEHRFGVRHKERIKAIQTNIDSLSMTATPIPRTLNMALSGMQDISIIATPPARRLAIKTFLLPKSDETVKEAILREILRGGQVYYLHNDVASIEAAADTLRELVGEARVAVAHGQMNERELSAVMNDFYHKKFNVLVASTIIETGIDVPNANTIIIHRADKFGIAQLHQLRGRVGRSHHQAYCYLMVPSLKGLSSDAKKRLNAITRANTLGAGFMLASEDLEIRGAGEILGKEQSGNMQTIGFGLYMDILERATNAIKQGKTPSLATPLDLVSDIDIHASALIPDEYLGDVHERLVFYKRISSLDDVNQLIDIRTEMIDRFGTLPVQTQNLFAVHRIRIRAKALGVTKIDATQSTISIEFHADTPIDGLAIIKLIQSNDGYRMNGATAIRYTSQELMDTQARIDKVNELLLYFESAKTA* common_virus_hmm common_virus C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0044 persistent direct high 3555 0.999 GCA_001656115.1_01243 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 44915 45577 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 44916 45578 GCA_001656115_1_16_45 GCA_001656115_1_16_45 - 218171 . COG0352 Thiamine monophosphate synthase [Coenzyme transport and metabolism]. MTLQSIDKAPKLYLLTNDDELTTLLDKLERVFDTGAVSLLQVRRKSTLKLYDLATVYREAEMIVSLANDYDIKVVMNDNLELASHFGTGLHLGQRDGSVRVAREILGDDVVIGRTCHTDIALFKEAKREGATYGAMGTAFASITKPRAKIISKDILKKACEFDFPLCVIGGIALENIHQLRDELNGAPIDYIAVTADIMGHSVDTIADKCLAWQQKLNTW* mmseqs_cdd nonviral_gene C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0045 persistent direct high 662 0.998 GCA_001656115.1_01244 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 45732 46169 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 45733 46170 GCA_001656115_1_16_46 GCA_001656115_1_16_46 - 218171 . 6AF2_A HIT domain-containing protein MFQLHPTLAKDTFLVGDFPLSTVRLMNDCQFPWLILVPRVSGIKEIYELSVADQIQFLRESSWVSSQMAKIFGADKMNVAALGNQVSQLHFHHIVRYQNDAAWPNPVWGHEAMPYTQEVLSHMQQTLMMALRGHHQMPFDWKMDV* hhsuite_tools hypothetical_protein C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0046 persistent direct high 437 0.998 GCA_001656115.1_01245 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 46787 46984 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 46788 46985 GCA_001656115_1_16_47 GCA_001656115_1_16_47 + 218171 . PFAM:PF16777.4 transcriptional-regulator MPKIVANPKTRAQIQKDSDTRRGVKQIGFKVPISFVQSLDELAKQTGKTKNIIIMEAVDLWAKQL* phrogs_hmm hypothetical_protein C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0047 persistent direct high 197 0.995 GCA_001656115.1_01246 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 46986 47714 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 46987 47715 GCA_001656115_1_16_48 GCA_001656115_1_16_48 - 218171 . PFAM:PF05939.12 minor-tail-protein MADQTVAARQAAQSNSGLASSYGGVGSAAKKAADATKKAADKTKKATDDIGDAINELSALVAKLHHESHQMLNNSLSEMIFETDNPFGKFYGATEAQKQKLKDLAGQKDLYTATKKADDELKSLARTIKLVGKQTPFDELRNDLFDVRHEMSVLNGETKNNLLLWAANAENAKLAYELNQRSSQINTVILPIKDFLDEHKGVKPFLWTNPHGQTKKYVCENYEISQKKGNFWQIGLKFEQVF* hallmark_hmm common_virus C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0048 shell direct high 728 0.999 GCA_001656115.1_01247 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 47720 49612 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 47721 49613 GCA_001656115_1_16_49 GCA_001656115_1_16_49 - 218171 . UniProtKB:I6NKY8_9CAUD Tail-tape-measure- MALAINIVLGANTAHFSRNIQKATQNAKKDLQGFAGFAQNALDKINVGTLITAGTLKSIIATADEMQNLASQIRLATSSTEQFHAVQTKLRAIANEQRSSFDAVVDLYSNSQRSLSALGKSQQDVINFTRNMTMAMNVGGRSAQAQAAALTQLGQALASGVLRGDEFNSVAEQAPILMDLIAKEMGVTSKAIRELAKDGKITADVVYNAVAKATDSLSAMSAKMPTTVSQALQVIKNEYNYLIDDIMNQNSMMSQNIANAVLWAAEHFRTLVSAGAMVGAVWLANVAKNSALVTSFATLAGATLASTKASIANAFSVQGQITAYNALSTRLMSLRSTKAHYIDLTKTAITATTAYARSLVGLATSFNTATAAVRLHTLALAGVTTAKRSAMGVGILATRAITGLGGAFMALGRIITAHPIIAIGAVLASVVVSTHGVTGALESLSDAFGVSTLMAKDFIGFIGNGFSMAWDIVSNFADNMLAKVGDTTKGSTGAFAGFFNTSHGGFVGMLQVAAKTFDLINAAAKAGAQNALHNFVQLGKTTKNIFLGMGNAFVSIIEMMINNAARKIDFLSTKANGMAKVLGIEASIPLIGTVSLGRLQYNTVDFGVVATIADSNTHLQIAILIQHIIM* hallmark_hmm common_virus C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0049 shell direct high 1892 0.999 GCA_001656115.1_01248 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 49673 50059 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 49674 50060 GCA_001656115_1_16_50 GCA_001656115_1_16_50 - 218171 . . hypothetical protein MFGIKLLHSDDFIKSASSSGCFLAIMDKQTNKNHVYNLSTQVQRFELIDTDQVANLANSVQNGAISATVGTLLVGAGVLPALIALSIGAGLPNRTKDAYVCHIEFDDGKSAILQLSKHKYQQFLKHIA* . hypothetical_protein C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0050 shell direct high 386 0.997 GCA_001656115.1_01249 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 50104 50421 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 50105 50422 GCA_001656115_1_16_51 GCA_001656115_1_16_51 - 218171 . PFAM:PF06223.11 tail-protein MFKLALALGRTVGELENSLSYDEFIQWQAYDRLDPFGGYRQDIQTAHLLYAKLGNDDNNISDFLPIDPNPMTDKMREAYEATKAEQALQKQSEALMCMFDRLEKA* phrogs_hmm hypothetical_protein C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0051 cloud direct high 317 0.997 GCA_001656115.1_01250 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 50442 50765 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 50443 50766 GCA_001656115_1_16_52 GCA_001656115_1_16_52 - 218171 . CDD:pfam16459 Tail-assembly-chaperone MKKSTLLNKIKSLSEPTQASIDGIDEPLFIRRISVAEQGKLAKLADDQTAAAVALVLYGVCDEKGERLFDDDDAKQIEDLDSKTVGQIVEAVSRVNFGTAEMAEKNS* hallmark_hmm common_virus C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0052 cloud direct high 323 0.997 GCA_001656115.1_01251 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 50798 51226 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 50799 51227 GCA_001656115_1_16_53 GCA_001656115_1_16_53 - 218171 . PFAM:PF16461.4 tail-tube-protein MAKNVANLLDSFYTLSVSTTEDDFKKVEHLQKCAVPTEEKVMDEVTATDDKRTVKAVVDFKEESEIEFEFVHEPNDEGQKIINTAFETGAELNFKLEFVKAASEGRKFKGIISKLSIDNEDTKKKLRKTGTISITGDVAKIG* hallmark_hmm common_virus C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0053 cloud direct high 428 0.998 GCA_001656115.1_01252 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 51237 51584 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 51238 51585 GCA_001656115_1_16_54 GCA_001656115_1_16_54 - 218171 . PFAM:PF05657.10 tail-component MNASHLIYTALSPLVSGQVYPYFIPETADDMPPYVIYQIISTMPITTLDGITHHERVRMQLDAYHSDYDELLTLYGEILDSFDKLPMSEHDGTQFSYDDGLYRASIDVLFNHTAK* hallmark_hmm common_virus C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0054 cloud direct high 347 0.997 GCA_001656115.1_01253 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 51616 52074 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 51617 52075 GCA_001656115_1_16_55 GCA_001656115_1_16_55 - 218171 . PFAM:PF04883.11 tail-component MVSQPYFATNPILKEAKNRAPASEDAYRRYMSSGQGEGKTTHTKSGKKRRVATNRAKRGHGRYVIQQAGLLKKSIRRQRLTKNSREIHRAAVGIGVHLKGKTGETAFYWHMVERGTKNMPAVPFFRPAFDHHKDEAVQRFKKKLGERIDKLK* hallmark_hmm common_virus C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0055 shell direct high 458 0.998 GCA_001656115.1_01254 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 52392 52727 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 52393 52728 GCA_001656115_1_16_56 GCA_001656115_1_16_56 - 218171 . PFAM:PF05119.11 Small-Terminase MGGIATVAGRSRKPKPTKLKEPNGNAGKRALNKNEPKFKQVTNIELPKWLELLAVEMCKSVFPELLANDLDLLTLGDCIIWKHFVWRTHGGEKKLSPTHLLIYELPQCKTH* hallmark_hmm common_virus C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0056 shell direct high 335 0.997 GCA_001656115.1_01255 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 52810 53154 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 52811 53155 GCA_001656115_1_16_57 GCA_001656115_1_16_57 - 218171 . PDB:5H0M_A HNH-endonuclease MTTPCRARLCKNLVKSRLMKGYCDEHAHLRHGWQHNKSASERGYGSQWKRLRLKVFKRDKYLCQMCKADARYTHATDVDHIIPKAKGGTDDMANLQSLCSSCHKIKTAQDGRGG* common_virus_hmm common_virus C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0057 . unmatched_CDS none 0 0 . GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 53151 53369 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 53152 53370 GCA_001656115_1_16_58 GCA_001656115_1_16_58 - 218171 . PFAM:PF08273.11 primase-helicase MLLGYDVGDGQHKPCPHCGGRDRFRFDNHNIKAGDGGWICSQGMGETAGGDGLSFLMDHVGMQPKDALTKEI* rep_hall_hmm common_virus C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0058 . unmatched_CDS none 0 0 . GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 54510 55646 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 54511 55647 GCA_001656115_1_16_59 GCA_001656115_1_16_59 + 218171 . TIGR03707 polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1). [Central intermediary metabolism, Phosphorus compounds] MATTPKPKTATTSSTTATTAPKKTTSTRTKVSTATETKPKPSKAEAIMTQTVGQLEELLEHATPEELAEFGEALKEYLPTTQVISQVRTDKSRDTQLSDNWREGGYPYKYRLSRKNYEAQKYKLQIELLKLQHHIKTTGQKLVIIFEGRDAAGKGGTIKRFMEHLNPRGARVVALEKPTEQERGQWYFQRYVQHLPTAGEIVLFDRSWYNRAVVERVMGFCTDEEYRIFMHQVPEFEKHLVESGIHLVKFWFSVSREEQRVRFASRENDPLKQWKLSPVDKASLNKWDDYTLAKEAMFFNTDTAEVPWIVIKSDCKKRARLNAMRYVLNKLTYENKDITQIGNIDPLIVGRAGALYEMDERIDLTVSTQLSRKTTTTK* mmseqs_cdd nonviral_gene C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0059 persistent direct high 1136 0.999 GCA_001656115.1_01257 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 55811 57364 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 55812 57365 GCA_001656115_1_16_60 GCA_001656115_1_16_60 + 218171 . COG1570 Exonuclease VII, large subunit [Replication, recombination and repair]. MPKNTIIKHVEALGSTLDDPETLLNKHRQIAESFEEELAKEAVFDENSNHLADAHLSLSDYLTAVKMVIDDSFDHEVWVRAEIRAMNTKGGHYYFELAETDDADQITASCRATLWRFRAKTVMSKFTKMTGQSLQAGILVLVKCSASFHTNYGFSLSISDIDPNYTLGEIAAAYTQMKKRLSEEGLLHLNKQHAIPFDIRHVIVIAPEKAAGLGDFRAEADRLALAGACQFHYHYATFQGNHAPNEIRLAISEGMNNFKNTYDTMPDLLVIIRGGGAVGDLAYLNDFELAALVAECPIPVWVGIGHERDSVILDEVAHSSFDTPSKVILGIESHLVKMTRQAVATMERLTKITNTRLMMAKANSQRQIEQIQRSSLHAINMAKKDNVYQLNHIKSTAKFRHHQEKSALTALLAQTQKASLVITSQAKHTTKIHLNRHNSLFDHLSKLKKDCLHLQSLILIQHPSRMLQKGYALIHSNHTNESIHSTKTLQQNQSVKITFKDGTASAVIKDISTHKTT* mmseqs_cdd nonviral_gene C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0060 persistent direct high 1553 0.999 GCA_001656115.1_01258 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 57361 58386 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 57362 58387 GCA_001656115_1_16_61 GCA_001656115_1_16_61 - 218171 . COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]. MMTDNKLQKSLKNQHILSQPLSIGGLKIENRIWVAPMAGVTDNPFRRLCKSFGAGHAVSEMIIADTALYARKKSLYRANFDGEIAPISAQIAGAEPDKLAQAAQFQVANGAQIVDINMGCPAKKVCRKLAGSALLQDEDLVKRLLDSAVLAVDVPVTLKTRLGFANGQENILKIAQIAEQAGVAAITIHGRTRENFYTGQARYELITQVKKAAKIPIIVNGDIDSPQKALDIQAKTGADAVMIGRAAQGKPWLFQQIAHFANTGELLASPTVAEIHEVVLRHLDELYRFYGEYSGCRIARKHIAWYTGGLPNSNAFRDAMYACETTKEQFEVVDKFFKTIS* mmseqs_cdd nonviral_gene C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0061 persistent direct high 1023 0.997 GCA_001656115.1_01259 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 58506 60563 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 58507 60564 GCA_001656115_1_16_62 GCA_001656115_1_16_62 - 218171 . PDB:3UPU_B ATP-dependent-DNA-helicase MAGDIISRYVTDRIQDNHQWYAKKQVLAAECTLRLPDFELYHIVQNALLFQLNQGHTILHINDHDDLNDRHGLNGVIPIWQQKIMDSCLTVITHALADEGMDWAAFFDAYHRCADDTIKIKQFVNHALNHFRQQLSLFDHTVMKIEQLAALFLSMLRIYYVLYKNANTLNQFVSLLHNSTFFGDILASNIQSILTNTPPIYFSDQADGLYLWTSRAYLAESQLMTHILRISQADVPVFALDQLSNSLNTEQRDAIKLVSKQAFCLITGGPGTGKTFTVAQIVIALNQRDEHKKMRLGLAAPTGKAAQRMSESLLKSLDKENDIQLPEPKTIHRLLGIGANGSPRYDAKNQLPLDMLIIDEASMLGTELASQLFAAIATGCRVILLGDTHQLAAVDAGAVLADLCRIERLRHLRVNLTASKRFTDTSGVGQLAKLINDDRQNIHFDEIQQLINYHTNIDFHPITHALMHNDTYQKLSQDYQDYFLASKRLRFSFAKLSDQDAIDSVKNLFEILDTYRILCASHIGVFGDDQINDYLSLAHRAVQKIPPSASPWFHGRVVMVTKNLYDLGLFNGDIGICLWSSSGLSVYFEGETLRMVAVDMLSDTVVSTAYAITVHKSQGSEWQKVAIIFDDNSERLLSKELIYTAVTRAKSAVHIYSTHDALINAINTPTVRQTGLDKVSDGRQS* common_virus_hmm common_virus C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0062 persistent direct high 2057 1.0 GCA_001656115.1_01260 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 60611 64558 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 60612 64559 GCA_001656115_1_16_63 GCA_001656115_1_16_63 - 218171 . PDB:1UAA_B Replicase MTDTTLTMPPTPPKPSEQIAALQCTLEQAYLIEASAGTGKTWTLTGIILRLLIEKKYPPERIIATTFTRAAAAEMQERISERLHSFYGLMRWLQGMLSTQPEWFNQTAPIEQIITCANQAGYDAADPINEHLLKFILSQQATFLNEVVYRTGLLLTSLDKLFVGTLDSLAQKWLNEFAAQIGHQSGMEILNNAEQKVAAIVHDEMRAEEVRLKHAQPEFYQIFKAFYPNFFSQVDAVVKIVNKAINFYSAPIDELVPINTDISLTKAMIEQIITTDFTGFTPYFDANFRKQISMNQSLGFGKLIQYLPNLLSLIQKHGVLFVHFVDNDALRMIGAIIKAMDKDWQIFNKSANPSDINQFLALPLQALSDIANVYLTLSEQTNLYHTHICRHIILSAKSQIAQRLEAHGQTTFTLQMVRLNEALRNNPALARQIRHHYPVALIDESQDINGLQVELIELVYLNEIANYHKNLIRYEQIGGEKPKLPRGFLLLVGDPKQAIYRFRGGDVTNYNLIKHYGNQDLLINAPLINQSLSLTVNRRSSKALIEALNAWFDNNHQDGVANHANLGQGIFYQQIQAHKDGGGIHWQSDAYADYYGKYPVAVLHFDHIEAGQKAAQRAEQIARHINTILQGDHTLHGQKILPKDIAVLGRTADTLDRIKSELDQLNIPAIIPKEMNIFITQAADDLLALIGAILQPKHSENLGKFLVSSLVGMTLKQAMDIIEPNDQQALDNDLSETQNLKTHLLAYLKKSYEKWQKFGVSSALAYALHHSPIDHDNDKSPWLKAATQGERYLVDLERLVALVSEQSQLHEMRVIAWYHKQMNADVDSHNKRPILPSESGVNLMTIHKSKGLEFPIVYVIGMDEKPKNENGLTIYPYTNHNFQRCLSLSQGNLIDENYYYHINQQELIDEIRRLGYVALTRASEQLYIVGGDLSKKASKEMPLYQWLDCAGEKILSLPDRLKGLVDWIDLTEADLFSQPYQTKLPNLSTKHYAPWDMVMTKTQFFGEYKTSFSALITRLDKSTISPDEADIDQLSVLTDMAASDQFDDIRTSFFKGSLAGDFLHKVMQFLPTDRLALVSLHDAHRIISGVIYEQGRKLGIAERYLPTRPAQQIGTRINSNEHQADDHTKLVAWIYQLAYAPFRASHRSLMSLPMTVQLRELSFTLGLGDTFSITRLNEIFKAHSDKDLVLLDDDYHTMCYRYLRGEIDLVYECDRRFFIVDYKSNYLGSTPDEYHDHAMTAAMDKVGYWLQAAIYQVALHRLLKIRLKDYVGNEAAYLGAVEYVFLRGVQEGNEKTGHLCWQPPLSLILALDEIL* common_virus_hmm common_virus C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0063 persistent direct high 3947 1.0 GCA_001656115.1_01261 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 64622 65263 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 64623 65264 GCA_001656115_1_16_64 GCA_001656115_1_16_64 - 218171 . cd10032 Uracil DNA glycosylase family 6, includes hypoxanthine-DNA glycosylase and similar proteins. Uracil DNA glycosylase family 6 hypoxanthine-DNA glycosylase (HDG) lacks any detectable UDG activity; it excises hypoxanthine, a deamination product of adenine, from double-stranded DNA. Uracil-DNA glycosylase (UDGs) initiates repair of uracils in DNA. Uracil in DNA can arise as a result of misincorporation of dUMP residues by DNA polymerase or via deamination of cytosine. Uracil in DNA mispaired with guanine is one of the major pro-mutagenic events, causing G:C->A:T mutations. Thus, UDG is an essential enzyme for maintaining the integrity of genetic information. UDGs have been classified into various families on the basis of their substrate specificity, conserved motifs, and structural similarities. Although these families demonstrate different substrate specificities, often the function of one enzyme can be complemented by the other. MPLLFNDKVKANFMFNQLMTIQTIHKHPLPPFTPPNACVMMLGSFPPPPERWAMPFYYPNYNNDMWRILGAVFFDDTERFIDITHKTFYQDAIEQFLTKTGIAIGDTAEQVIRQKDNASDQFLQIVTPTDIEKILKQLPRCHAFITTGKKATEVLCQQFTSQKIPKIGEQVQLLIGNRRIDLYRLPSSSRAYPLAIDKKADFYRKVFETLGVL* mmseqs_cdd nonviral_gene C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0064 persistent direct high 641 0.998 GCA_001656115.1_01262 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 65291 67405 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 65292 67406 GCA_001656115_1_16_65 GCA_001656115_1_16_65 - 218171 . PDB:5JXR_A Chromatin-remodeling-complex-ATPase MRLPETTRAERQTNQLARRIQEKAQLTGVNVSGTQISSQAFEMVTDFEPSGDQPKAIAELVKGVEADMRGQLLLGVTGSGKTYTMAKVIAECGRPAIIMAHNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPASDTFIEKDSAINDHIDQMRLSATRALLERRDAIIVASVSAIYGLGDPESYLKMLLHIVVGDRVHRDAVIKRLVELQYERNELDFGRGTYRIRGETLDIYPAESESLAVRIQMFDDEIEKITWFDPLTGKNIKSVPRITIYPKSHYVTPKEKLEAASTTIKEELAQRLEYFRANDKFIEAQRIKERTQYDLEMIGQLGYCNGIENYSRHLSGRPAGEAPPTLFDYIPSDALLFIDESHVTVPQIGAMYKGDKSRKETLVQYGFRLPSAMDNRPMKFEEWEKISPATIFVSATPAQYELEKSEQVVEQVVRPTGLVDPILEIRPVLTQVDDILGEINLKKSLDERVLITTLTKRMAEDLTSYLKEYGIKVAYLHSDIDTVERMKIIHELRTGIFDVLVGINLLREGLDMPEVSLVAIFDADKEGFLRSERSLIQTIGRAARHVNGKAILYADTITPSMQKAIDETERRRAKQIAFNQEHGITPKSASRAITDKIDTGDDETSEVVQIVLSQALAGVDENILHSPKLLAKEISRLEKQMQALSRELKFEEAAKVRDTVIALKELLVQ* common_virus_hmm common_virus C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0065 persistent direct high 2114 1.0 GCA_001656115.1_01263 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote CDS 67521 68951 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 67522 68952 GCA_001656115_1_16_66 GCA_001656115_1_16_66 - 218171 . COG2951 Membrane-bound lytic murein transglycosylase B [Cell wall/membrane/envelope biogenesis]. MRLFLEVFMKNQSATHWALSVMTISVLLSACTSHVVHERAPIKVVQVTPNPAQVAPPAQVPAQALTKVPTSTVQPTTAKPASVVVQKSVVVQKPAPTNTPSMTTQSHYATFAEWKHDFIHRALAKGINANSLNSLMSNATLNQRVIELDRSQAEFTKMPWEYVESAASSNRISQGRAKLTENLSILTSAESIYGTPKEITAAIWGMESSYGAGMGSMDLVNALSSLAYDGRRREFAESQLLAMLLMIERGDVAASQLKGSWAGGMGHTQFIPTTWIQESIDGDGDGRKNPWNRQDALTSTASYLANAGWIRGLQPFYEVRLPTGFDFLQLNSKRSLDAWKALGLISASGEYFGGVHDAQLWLPAGQYGPALLLTKNFEVIRVYNNSSSYALGVSLLAKKIAGGHDLVQSWPRHEQPLSRTQIINLQKNLTAQGYDTQGIDGVAGSNTRQAFARWQAANGQIPDGFISQRTAGHLVW* mmseqs_cdd nonviral_gene C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_CDS_0066 persistent direct moderate 1407 0.983 GCA_001656115.1_01264 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote cenote CDS 1 3507 GCA_001656115.1 LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115.1_LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115_1_3 GCA_001656115_1_3@C0 2 3508 GCA_001656115_1_3_1 GCA_001656115_1_3_1 - 48052 . PFAM:PF13550.5 tail-protein MTIHGSKKGSSKQRQPVIAPDSAQSKTFISIMYGLGEGEIAGLANGYKSVYLDDTPLQNDDDEFNFPNVKVDFRTGTNDQEYIDGFADVASETNVGVELKHGTPWVKSFNNLDLDALRVRIKWGALRQQNPDNGDVLGVKIDYAIDVKTDNGGWAEALNTSINAKTSNAYERSHRIDLPKAQTGWAVRVRRITPNSTSELVSDTMYISAITEVIDLKLRYPNTALLGLRYDAEQFSNVAKMSAHCRGLIIKVPTNYNPITRTYDGLWDGQFKLAYCNNPAWVYYDLCTATRYGLGGRLTEYMIDKWSLYRLAQYCDQMVDDGMGGQEPRFTVNVYIQSADGAFELLSRLAGVFRAISYWDGTSIVLDADIPQDSIYSFSRANVIDGIFEYTGTRARDRHTVAKVAWDNPANHFKTEYEYVRDEKAIAKFGVRVADIQAWGCTSKGQAQRAGLWALKSEQLETRMVTFKVGLDGYIPAPAKVIEISDELFAGRATGGRVLGINDKKTIITLDRAITAKVGDTLVINGNDGTSQRRQISAVNGDNITVTKPFSDISEQNVWVLDSQDLATMKFRVLSVTADDNHQFTITAVQYSPAKYDAIDHGAYTPERPISVINPSVQAPTKSVNLSSYHTVNQGVTVTTLVIGWEQVTGAVKYAVEWRKDNGNWQTLPPTGTNSIEIAGVYAGQYEARVTAISAFGQASLATHSNLTQIQGKQGKPPRPINLSVQGVLFGMNLGWNFARGSDDTNYTEIQVSPDGRSNIATLGTFAYPTNKHEITGLQGNLTQFYRGRIVDKLGNTSDWTAWVSGTTSADADKVLDILSGQISQSHLDQSLRTPIGKIGTIESEISGINSKIPSIESNINSFNSKIPSINKIPTIESAINSVNSKIPTIESNINSVNSKIPAIESNISGINSRADTINSTLADANNRLNEAVQSITNIDTRTQWQTRGATSLNSLTEQGKYYLESVSNTNTPLTGWQYATVDKARNGDRITQTVWNDSTKSYTRTKTGDTWSAWVESVDKSQLDNTANQLTQSIEQTSTQIRATLATKASTDSVTSAIRDINALQADKNAKTAEIANLTQTVNGHTSQVRQLGVTTGDLTQKYSQLKTTSDTANSEITAIKQTQSGQATSVERLRSEMADKASSADLQSVQQTLTTQEQALSRRIGTV hallmark_hmm common_virus C0 35978.0 0 35978 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote_CDS_0001 . unmatched_CDS none 0 0 . GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote cenote CDS 3522 4097 GCA_001656115.1 LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115.1_LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115_1_3 GCA_001656115_1_3@C0 3523 4098 GCA_001656115_1_3_2 GCA_001656115_1_3_2 - 48052 . PFAM:PF06805.11 tail-assembly-protein-I MKTIILHGILARKFGKSFNLAVGSTKEAMRALCVQLAGFEAFMMNAHKQGLRFAVFHDKHNVGENELDMSHTAKIIRVVPVVEGSKKEGVLETVIGAVLVVAGVVVTGMGFAPAGAALIGAGVGLMVGGISQMLMPKVDAQDNNQDGNKANKGFGGAVTTIAQGNPVPILYGEREIGGFIMSASQLPEDML* hallmark_hmm common_virus C0 35978.0 0 35978 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote_CDS_0002 shell direct high 575 0.998 GCA_001656115.1_00344 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote cenote CDS 4200 4388 GCA_001656115.1 LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115.1_LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115_1_3 GCA_001656115_1_3@C0 4201 4389 GCA_001656115_1_3_3 GCA_001656115_1_3_3 + 48052 . PFAM:PF07927.11 toxin MKRKDLIGLLSEKGAVFKEGAKHTKVYLNGKQTTIPRHTEIKENVAKAIIKQLNANSQQTSD* phrogs_hmm hypothetical_protein C0 35978.0 0 35978 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote_CDS_0003 shell direct high 188 0.995 GCA_001656115.1_00345 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote cenote CDS 4445 4858 GCA_001656115.1 LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115.1_LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115_1_3 GCA_001656115_1_3@C0 4446 4859 GCA_001656115_1_3_4 GCA_001656115_1_3_4 + 48052 . COG1598 Predicted nuclease of the RNAse H fold, HicB family [Defense mechanisms]. MHYPVTLTPDTDGFCVTFRDIPEAISQGDTIDEALEMAQDALMVAMEFYFEDNRAVPMPSQAQDGEHLVSLPPSVWAKVLLLNEMLCQNVSQAELAKRMGIIPQQVTRLVDLSHATKIDTLANAFAKLGKQLQVGLT* mmseqs_cdd nonviral_gene C0 35978.0 0 35978 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote_CDS_0004 shell direct high 413 0.998 GCA_001656115.1_00346 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote cenote CDS 4838 5626 GCA_001656115.1 LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115.1_LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115_1_3 GCA_001656115_1_3@C0 4839 5627 GCA_001656115_1_3_5 GCA_001656115_1_3_5 - 48052 . cd08073 Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) found in proteins also containing NlpC/P60 domains. This family contains bacterial MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains at the N-terminus of NlpC/P60 phage tail protein domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site. MILTEQTKSFILNHAFDCYPAECCGLIVDKKYIPCTNNAHDNEQFILCPKDFARAESMGQIQAIVHSHPDGGVLPSDLDKLQIELHGVPWVIVAVSKQDYGDEPAFGIYEPCGYKPPLLGRAYIHGVQDCYSLVRDYYSRELDIELPDFERADAWWEHENHEPLYEKNFAKAGFIKVQDKNDLQKHDVILCRVGRTHHVNHALIWLGDDGALKSETTPDCVGNALILHHPYGRQSVREIYGKGWADRTAMVVRHQALSQTNL* mmseqs_cdd common_virus C0 35978.0 0 35978 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote_CDS_0005 shell direct high 788 0.999 GCA_001656115.1_00347 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote cenote CDS 5623 6051 GCA_001656115.1 LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115.1_LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115_1_3 GCA_001656115_1_3@C0 5624 6052 GCA_001656115_1_3_6 GCA_001656115_1_3_6 - 48052 . . hypothetical protein MYNFIKTLTDSKDKTKLKTKEFAEVTTPLWLVQKQLDLIPPDERLNLNSKVLDPCTGDGRYLMMYLMNRLTVIKCPNDLYQAISTLHGIELQAVNVARARHNLYLCTKFIAQSKGLAVDFDKVKKILAKNIWQGSFIKKDKK* . hypothetical_protein C0 35978.0 0 35978 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote_CDS_0006 cloud direct high 428 0.998 GCA_001656115.1_00348 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote cenote CDS 5999 6553 GCA_001656115.1 LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115.1_LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115_1_3 GCA_001656115_1_3@C0 6000 6554 GCA_001656115_1_3_7 GCA_001656115_1_3_7 - 48052 . . hypothetical protein MNDHYPQLKGKSFETWQELWQAMTDRDFDEVYGLHCECERKRALGHYRNRKLKQARNLICTLLYRQKLHQVKQPLILTKRRYAKPLPNPKNIDEIWQNLTDENYDEMYRLHCQYAKQQHNKDTKRACGLIWKFRQHCKLAGFDYPKKCVTKGFRQSKNHPWQKMIESDVQFYQNTHRQQRQNQA* . hypothetical_protein C0 35978.0 0 35978 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote_CDS_0007 cloud direct high 554 0.998 GCA_001656115.1_00349 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote cenote CDS 6563 7270 GCA_001656115.1 LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115.1_LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115_1_3 GCA_001656115_1_3@C0 6564 7271 GCA_001656115_1_3_8 GCA_001656115_1_3_8 - 48052 . PFAM:PF05100.11 minor-tail-protein- MSFNTDIQKPTVDGLITLFELDASRLGAGILRFHGHNHDKNDGVITFRGKAYNPQALSVTGLEMRSDGRASTPTLTLANNIAGVQGAVSAYCLQFNDFAGAKLTVITTLAKYLDPINFDNGNPTASDECKEQIWFVEQKTSENAQQVTFELSNPIDLEGLKIPVREITNYCHWAVVGKYRGEECGYTGATMFDEHDNPTDNPIMDKCGGRMKSCVCRFGKNKPLPFGGCPAAGLV* hallmark_hmm common_virus C0 35978.0 0 35978 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote_CDS_0008 shell direct high 707 0.999 GCA_001656115.1_00350 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote cenote CDS 7369 7761 GCA_001656115.1 LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115.1_LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115_1_3 GCA_001656115_1_3@C0 7370 7762 GCA_001656115_1_3_9 GCA_001656115_1_3_9 - 48052 . . hypothetical protein MSEPTLTELSRTEAQVLQSFIAQVDYWKNHHGDKATTIEITYYPDDDGFEVANGEPNNGVLKRNRTTVFRADLLAWASNQLRQLQGWDNSQTVTEFSLSYKNDRYGVRAALASEATDKADDGAEQAEQDK* . hypothetical_protein C0 35978.0 0 35978 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote_CDS_0009 persistent direct high 392 0.997 GCA_001656115.1_00351 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote cenote CDS 7864 8166 GCA_001656115.1 LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115.1_LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115_1_3 GCA_001656115_1_3@C0 7865 8167 GCA_001656115_1_3_10 GCA_001656115_1_3_10 - 48052 . PFAM:PF05939.12 minor-tail-protein MGASASVHHAVSKTQFGDGYAQRVSHGINNQRTDWSGSKTGDWQTVILPIKNFLDEHKGVIPFLWTNPHGQTKKYVCENYEISQKKGNFWEISLKFEQVF* hallmark_hmm common_virus C0 35978.0 0 35978 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote_CDS_0010 shell direct high 302 0.997 GCA_001656115.1_00352 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote cenote CDS 8244 8501 GCA_001656115.1 LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115.1_LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115_1_3 GCA_001656115_1_3@C0 8245 8502 GCA_001656115_1_3_11 GCA_001656115_1_3_11 - 48052 . . hypothetical protein MNKDDLEVIVTNMTEVSLDVGFANQLLVSSLVKYLADKNIIDLDDYLAQNQQIQDYLISQSRNDRENKLIEKVFTEHRKDFEKPE* . hypothetical_protein C0 35978.0 0 35978 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote_CDS_0011 cloud direct high 257 0.996 GCA_001656115.1_00353 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote cenote CDS 8498 12055 GCA_001656115.1 LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115.1_LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115_1_3 GCA_001656115_1_3@C0 8499 12056 GCA_001656115_1_3_12 GCA_001656115_1_3_12 - 48052 . UniProtKB:I6NKY8_9CAUD Tail-tape-measure- MSQVLERLQILLHADTARYQRDIKKASSDTKREFESIKTSAQSMAGYVKSALAGFGAAAAVSSVIRTADEMRTMTNVVRLNTQSHQEYKDVLLQLKTISNDNLTSIGSTIELYGSSKAALDELGKSQQDVLLFTENITKAMAVGGGSAASQQAALVQLAQALNMGALKGQEFNSVASQAPAILALLKSELGATTAELKDMAAKGKITAEVIYSAVAGASTELDKKLAQMPITVSGAMNVVKNNYKSIVNEIMNENSALTTTLAESVKWVGENLASLSIAAGAAGVVWGGLLIKNSALVTGFTAFVGAQVAATKAAAVNAFTVQGQAQAYNTLQTRLMLLRLTKAHYIDLTKQSVVAVRSNTAALLAQARAMSVATAAQRAVAGAAILTANAVSKVGGGMMALGRIIKVHPLMTLAAVLSAVVVSTHGMTGALESLSDAFSVTTLMAKDFIVFVGDGFSMAWDTVSAFADNMLAKVGDTTKGSTGAFSNFFATSHGGFVGMLQVAAKTFDLINAAAKSGAKNALHNFVQLGKVTQNIFIGIGNAFVSTIEFMINDMTRKIDWLSEKANAVAAFLGMESRLPLIGKVNLGRAQYNAVDFGVVASITDSNTHSAYNYVTALADQTVAARQAAQSNSGLASSYGGVGSAAKKAADDASKSGKKVKDAASELSEALEKLFDETMADLQQSNWELEQPFVSELAKLERDINSGKFNVTIDGVTSGLSEQALNALRDEARRLDRNKAGSFFDNMQREHNKEISLALSNGSKYLEMLYDINDANNSLSLAIDENKSIVLNSLANYEATKASIEMLKTIKDAKDEFSLLSIPDGLDRQLAEIGQQTARTIKQYQYLIENGYEAEYELVKTTAKQLEAAQMRNAVQEKYNQLVKESKSDVEQQTDNLKEQILILSEYATQMKTGLDIGHAQSLISDAIGLSEQTSLYDELDKERQSRHAILRAGVDQMLQNERLTEEERIKIKEWGIAERLKIEEAYLTARNQMVINDGESMFASLASITKDSLGEQSKAYRAMFAIEKGFAIARSIMAIQTALANASASGPFPANLGMMATVASQVASIVSNIKSVVMPVGQAHDGIMSVPKSGTWNLEKGERVLPRHTAKALDDKLDKIGTGGRPVNVVINNYSGEKTDVQHMPNGDMMVTIGKMMKQIGRTEAQKVVREETRQNGLIARRLA* hallmark_hmm common_virus C0 35978.0 0 35978 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote_CDS_0012 cloud direct high 3557 1.0 GCA_001656115.1_00354 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote cenote CDS 12057 12386 GCA_001656115.1 LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115.1_LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115_1_3 GCA_001656115_1_3@C0 12058 12387 GCA_001656115_1_3_13 GCA_001656115_1_3_13 - 48052 . PFAM:PF06223.11 tail-protein MRRFLFKLSAHLGRTIQELEQSISYAEFIEWMAYDRLDPIGGYRHDLQTAHILSVLIGSKGKTISDYLPIDPNPMTDDQRQAYEKARKKAKLDAQMSMLIRHLSKSCGE* phrogs_hmm hypothetical_protein C0 35978.0 0 35978 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote_CDS_0013 cloud direct high 329 0.997 GCA_001656115.1_00355 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote cenote CDS 12398 12772 GCA_001656115.1 LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115.1_LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115_1_3 GCA_001656115_1_3@C0 12399 12773 GCA_001656115_1_3_14 GCA_001656115_1_3_14 - 48052 . PFAM:PF16462.4 tail-assembly-chaperone MTLRNNILNIAKKPSLVKLEIPELEGEVYIKSLPLAERLEYEKSIAEQTSDDADAQADSKYNITPHILTFIYHVCDEKGKLLFTQDDIEALSGLPYAIFRKVNEAVVEMTFGSRPKTVEQAEKN* phrogs_hmm hypothetical_protein C0 35978.0 0 35978 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote_CDS_0014 cloud direct high 374 0.997 GCA_001656115.1_00356 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote cenote CDS 12825 13271 GCA_001656115.1 LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115.1_LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115_1_3 GCA_001656115_1_3@C0 12826 13272 GCA_001656115_1_3_15 GCA_001656115_1_3_15 - 48052 . PFAM:PF16461.4 tail-tube-protein MSDTETGYTDSHFIWKVSTDEGENYKKVNGLQSLPIPDTSKVTDEITTTDATNPQFDVVNYTESDAVEFEIVFNPSDPVHVALEKAKDDGSVVKSQIHFIDKRVKGFEFECKISKFTYDASDVKQKMRVNGTMTYTGDIKRITSNPTA* hallmark_hmm common_virus C0 35978.0 0 35978 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote_CDS_0015 cloud direct high 446 0.998 GCA_001656115.1_00357 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote cenote CDS 13298 13666 GCA_001656115.1 LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115.1_LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115_1_3 GCA_001656115_1_3@C0 13299 13667 GCA_001656115_1_3_16 GCA_001656115_1_3_16 - 48052 . PFAM:PF05657.10 tail-component MNASEIIYQTLSQIVDGKAYPLFVPESDSLSVPYLVYTPVSSVPVQTLDGISGDEWVRVQIDIYHSDYDALLSLYNQVISALQNKISLKVFGTSNQSVDDGLYRMMFECEFWSKNQILPTAP* hallmark_hmm common_virus C0 35978.0 0 35978 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote_CDS_0016 cloud direct high 368 0.997 GCA_001656115.1_00358 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote cenote CDS 13808 14353 GCA_001656115.1 LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115.1_LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115_1_3 GCA_001656115_1_3@C0 13809 14354 GCA_001656115_1_3_17 GCA_001656115_1_3_17 - 48052 . 3HSA_D pleckstrin homology domain MPSLEEVQAALQNKDAGINWLGKAEIKELPSILWENELPEMVIQGLYKNGNGILVCTNSRLIFVHKGLMSLKVEDFPLKSISSIQYETGMLMGKVTIFASGNRADIKNVDKNFVRGFAEYVRAKISDDVKPEPTTDPASVATTVPADDEIIAQLERLAALKEKGILTDEEFAAQKVRILGL* hhsuite_tools hypothetical_protein C0 35978.0 0 35978 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote_CDS_0017 cloud direct high 545 0.998 GCA_001656115.1_00359 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote cenote CDS 14415 14984 GCA_001656115.1 LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115.1_LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115_1_3 GCA_001656115_1_3@C0 14416 14985 GCA_001656115_1_3_18 GCA_001656115_1_3_18 - 48052 . PFAM:PF09151.9 zinc-finger-domain-protein MWGFLEFLVIVIGGFLAFLYLPFRFIYKMIKPNGDSRLKIGIIYPVIWIALIFGVIHSTSYINKKKAESQQQAAIEEAQEAQEKAEKERLKATQKAEKDAKKAAKKAEKAKEERLSKSGMIIACSAVIEPNLHNPKSMDIDYGATKQVEINGKPGLELYYYATNGFGATIRSRALCEFDENGFLMKVTQ* phrogs_hmm hypothetical_protein C0 35978.0 0 35978 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote_CDS_0018 cloud direct high 569 0.998 GCA_001656115.1_00360 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote cenote CDS 15107 15598 GCA_001656115.1 LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115.1_LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115_1_3 GCA_001656115_1_3@C0 15108 15599 GCA_001656115_1_3_19 GCA_001656115_1_3_19 - 48052 . PFAM:PF04883.11 tail-component MIGRIKIKGLKELEKKLANLDNATSGKALYSALNAAATPMVKTAKERAALAPEPHKMAYGKSGYVKVEPGLLKSAIRRRRLKRKEYTAIKQGAAIGIYIGKGTKQKLYPRYWHFIEYGTRKMPATPFIRPAFDENKEKSVEIFAKKLKSNIDKALNVSTWLPE* hallmark_hmm common_virus C0 35978.0 0 35978 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote_CDS_0019 cloud direct high 491 0.998 GCA_001656115.1_00361 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote cenote CDS 15582 15920 GCA_001656115.1 LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115.1_LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115_1_3 GCA_001656115_1_3@C0 15583 15921 GCA_001656115_1_3_20 GCA_001656115_1_3_20 - 48052 . PDB:2KZ4_A Head-tail-adaptor MRASQLRYSIKVHQKTISRSATGAVTSKWAHILTLSAQFTPLSVKDVITGQAAGTDITARAIIRYRTDIDHTMRVQYAGRMYEIVGEPLADNKSGKEYLTLMLKGVADDRKN* hallmark_hmm common_virus C0 35978.0 0 35978 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote_CDS_0020 cloud direct high 338 0.997 GCA_001656115.1_00362 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote cenote CDS 15929 16216 GCA_001656115.1 LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115.1_LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115_1_3 GCA_001656115_1_3@C0 15930 16217 GCA_001656115_1_3_21 GCA_001656115_1_3_21 - 48052 . PFAM:3JVO_G Head-Tail-Connector-protein MSQFATLDEVKHHLRYDDDDSDEILQIYLQSAQTAVKNYITDEISDDMLPALKVATLLLVGYLDDNRNSENGAEFGNFLPAPVRQMLSPYRTPTV* hallmark_hmm common_virus C0 35978.0 0 35978 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote_CDS_0021 shell direct high 287 0.997 GCA_001656115.1_00363 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote cenote CDS 16213 17520 GCA_001656115.1 LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115.1_LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115_1_3 GCA_001656115_1_3@C0 16214 17521 GCA_001656115_1_3_22 GCA_001656115_1_3_22 - 48052 . PDB:3KDR_A Portal-Protein MGFFDLFRKKSVGGAGSGWFPIISEPYTGAWQKNDELKRTDLTHFHAVFACVSLIATDIGKLKIKTKSPQNGVLLPTKSRTHAILKKPNRHQSWQQFIESWVSSKLLRGNAYVLKQRDIFGGLWQMYVLNPDRVKVLVSDDGEVFYQISTDKLYGLTDTTVPASEVIHDRMNCFYHPLVGLSPLTACAISVGLGLSIQHTSATLFGNNSRPSGILSVPSDISKENAKKVKSDWQKNYAGVDRGGIAVLGSGAKYEPIAMSASDSQALEQLKMSGETVCSVFHVPAFKVGMGEIKAGQKVSDLNEIYYSDCLQHYIEAIENLLDEHLDLEKGVECEADLSPLIRMDSTSQMAYLKEGTMSGIFSPNEARATLGLPPVVGGESPLMQQQNYSLEALAKRDNSADPFGNAPTPSEPKKTAKAVKPRYRVYATIDKDKS* hallmark_hmm common_virus C0 35978.0 0 35978 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote_CDS_0022 shell direct high 1307 0.999 GCA_001656115.1_00364 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote cenote CDS 17520 17708 GCA_001656115.1 LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115.1_LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115_1_3 GCA_001656115_1_3@C0 17521 17709 GCA_001656115_1_3_23 GCA_001656115_1_3_23 - 48052 . . hypothetical protein MQITYLKDAPTGAVGETHDVPEPQARILIILGIAKPAPSQSKADKPKRKTKTTTENSELDLS* . hypothetical_protein C0 35978.0 0 35978 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote_CDS_0023 shell direct high 188 0.995 GCA_001656115.1_00365 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote cenote CDS 17773 19128 GCA_001656115.1 LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115.1_LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115_1_3 GCA_001656115_1_3@C0 17774 19129 GCA_001656115_1_3_24 GCA_001656115_1_3_24 - 48052 . PDB:8ECN_B Major-Capsid-Protein MNFQEQLAKVKATIAIKQKQIGDAMTKAAKDNRTVNDDEEAQIKACEDDIEKLEKNAQRLNTLIKAEQMASSATQVAGQNPEQAEASAVGTPIPEPESTKSPATVKDNLDKGIGFSLLVKASAIATKSKGGVTTREVLQGWNAPDSVIRAATQKAVIGTTTDDKFGKELIDYANLTGEFIELVRQKTVVDKIAPLMRQVPFNVKIPMQTASGSVGWVGEGKMKPVGNPEFGSMTLGHAKIAGIVLLSDELIRFSNPKADQLVRDDLVATVAQFIDQQFFDPDKAEAAESPASILHGVNAVVSTGVSADKYDADLQTLIAKVVDAGFSLEGAVWAMSETRAMQLSGMRDALGRTYFEGMSLVGSRSLKGLPVLTCGYLADKIVLIIPNQILLADDGGIDFSVSTEATINMGTDEAPKMVNLFQNNLTAIRAERFIRWKPRMTKAVGYIKYTG* hallmark_hmm common_virus C0 35978.0 0 35978 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote_CDS_0024 cloud direct high 1355 0.999 GCA_001656115.1_00366 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote cenote CDS 19125 19718 GCA_001656115.1 LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115.1_LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115_1_3 GCA_001656115_1_3@C0 19126 19719 GCA_001656115_1_3_25 GCA_001656115_1_3_25 - 48052 . PFAM:PF04586.16 prohead-serine-protease MTKAYSTLQIKSVTDTDDDRIITGIATTPSPDRDDDVLETDGVKFALPIPLLWQHNHNQPIGEVIEATVTEKGIEIIAKIAKIAEKGKLKDRIDEAWHAIKSGLVKCLSVGFKVKEYNYIENSWGLHIKEWEWYELSVVTIPANPDAMITGIKQIKAAFNDQPKPINPTQVTKTHQPKPIANNGAVTLTSTQGVILL* hallmark_hmm common_virus C0 35978.0 0 35978 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote_CDS_0025 cloud direct high 593 0.998 GCA_001656115.1_00367 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote cenote CDS 19764 21491 GCA_001656115.1 LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115.1_LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115_1_3 GCA_001656115_1_3@C0 19765 21492 GCA_001656115_1_3_26 GCA_001656115_1_3_26 - 48052 . PFAM:PF03354.15 Large-Terminase MNKNLVPTWTTALPNWQERIVKGESLIPCKPLFTTMSDIALRVFKELALVDVIGCPKIGAVSKAWVFDFVAIIFGAYDPTDKKRLIKEFFLLISKKNSKSTLAAGIMLTALILNERQSCELVIVAPTKEVANNSFSPMQDMIRVDSELSALFNVSAHTKTITHRFTGASLKVIAAESNSLAGVKGAYVLVDELWVFGKRSGAAAMLQEAIGGLASRPEGFVIYLSTMSDEAPAGIFKEKLDYARSVRDGQIEDLRFLPVIYEFPQAYIDSGDYVKPENWYITNPNLGASVDMDYLTDTLKRAKESHDKNTLQTALAKHLNVEIGISLRANRWAGAEFWEGAGRAFSLDELIEKSEVITMGGDGGGLDDLLGCAVVGRLPTPKYIYTDDNNVRHEVKQWWVWVKAWCHPIALERRKQDEPRYRDFETDGDLVIVDNVGDDVAEFADIAKKVYDSGKLDKIGLDPAGADDIVIALESIGIPKDTHITGVSQGWKLGGYQKVCERKIASGDLTHANQPLMAWCVGNARVKLSGSGVSMSKSESGNGKIDPVIAMLNAVALMSQNPAPPKSADDIGIYF* hallmark_hmm common_virus C0 35978.0 0 35978 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote_CDS_0026 shell direct high 1727 0.999 GCA_001656115.1_00368 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote cenote CDS 21448 21834 GCA_001656115.1 LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115.1_LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115_1_3 GCA_001656115_1_3@C0 21449 21835 GCA_001656115_1_3_27 GCA_001656115_1_3_27 - 48052 . PFAM:PF11753.7 nucelotide-kinase MMSDDLINHPAHYTSCPSGIECIDIAELLPFCLGNCYKYLHRAGLKGDELTDLKKAVFYARRAYLNDEKLTEKAQSLIFKVARHQADEKRKILSCFAAAHIKTFYLFLQEHVSKYEQKLSTNMDNRST* common_virus_hmm common_virus C0 35978.0 0 35978 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote_CDS_0027 shell direct high 384 0.992 GCA_001656115.1_00369 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote cenote CDS 21824 21991 GCA_001656115.1 LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115.1_LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115_1_3 GCA_001656115_1_3@C0 21825 21992 GCA_001656115_1_3_28 GCA_001656115_1_3_28 - 48052 . . hypothetical protein MKYMNDACDTAELNNPADGQGFVYPVIDGECKIMRYDDFIKEFCFLPKDIRLNDE* . hypothetical_protein C0 35978.0 0 35978 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote_CDS_0028 shell direct high 167 0.994 GCA_001656115.1_00370 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote cenote CDS 21988 22476 GCA_001656115.1 LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115.1_LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115_1_3 GCA_001656115_1_3@C0 21989 22477 GCA_001656115_1_3_29 GCA_001656115_1_3_29 - 48052 . PDB:2CMP_A Small-Terminase MAITQKQKAYAEHVANGMDFHAAALKAGCKNFESARKFVADMAKRENVQAHIAELQKVQNGLGQNNQNSQDEPTATVPDAPNTPKYETPLGFLTAVFNNTDGLYTPKERINAAIALLPYTEHKLAQTGKKEDELDNAKNKSENGRFATLSNQADMFGSELLQ* hallmark_hmm common_virus C0 35978.0 0 35978 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote_CDS_0029 shell direct high 488 0.998 GCA_001656115.1_00371 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote cenote CDS 22612 22989 GCA_001656115.1 LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115.1_LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115_1_3 GCA_001656115_1_3@C0 22613 22990 GCA_001656115_1_3_30 GCA_001656115_1_3_30 - 48052 . PDB:5H0M_A HNH-endonuclease MIITKLFADNVCTGLFYWRFKMAKYKLSGLQPRLKPLTSHQSKRNWGKGRGGRSWRKLRDEILARDNHTCQLCGRVGGRLELDHIVNKAVGGTDDKTNLQILCHQCHKIKTQSESKAGGVQQFFG* common_virus_hmm common_virus C0 35978.0 0 35978 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote_CDS_0030 cloud direct high 377 0.997 GCA_001656115.1_00372 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote cenote CDS 23079 23489 GCA_001656115.1 LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115.1_LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115_1_3 GCA_001656115_1_3@C0 23080 23490 GCA_001656115_1_3_31 GCA_001656115_1_3_31 - 48052 . . hypothetical protein MNKPKLPRPHLIAAAESFARISCFADLCYRYYLYDDLSQRPRLERLALKELSSHLESIPEKYHQRIIATALTELTYPCPSNDPNQYPFSERERATCSGISRQTWRTHGMNDACKDIIDHIIAIAHSVRIKVKSQIF* . hypothetical_protein C0 35978.0 0 35978 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote_CDS_0031 cloud direct high 410 0.998 GCA_001656115.1_00373 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote cenote CDS 23815 26466 GCA_001656115.1 LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115.1_LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115_1_3 GCA_001656115_1_3@C0 23816 26467 GCA_001656115_1_3_32 GCA_001656115_1_3_32 - 48052 . PFAM:PF08273.11 primase-helicase MTAKKQNQQNSRPYLDFEQIREAAVGNYTNHIFSALGINFSKAPNQHQPCPMCGGKDRFRCDDMGGRGTYICSQCGAGNGIQLIQKCLHLDDYEAHAAIAGVLGIDTTVKISEEQKKRWAIERGQREEQEHLKKQQLKKQASYDAQKEFSAAAPCINHAYLSKKGVKSHGLRIKSNGDLLIPLYLHNIETGNITLTSVQRISANGEKSYKKDGQKSGAFFTIGDIAKSNIIFVTEGYATGASIYESLDGAHAVIVTFDADNLVKCASIVTALYPHHRIIFAADDDAETAARSTDGKNPGIQAAYNAALATQSEYISPDFGSDDDAKARIADGSLTDYNDLALYRGVEVLKAQLLHAINHQRIITTQAPEITLDVLLKECAQIINDRKGTMTNKIYHEPTLTDYNHTAFKRSFGHELTKQWLEHPNKRTINQTEIDSQRNDNAKRAFGYIFDNYAFITGTKEVFNISENTRQSVESLRLEYPNEFDMWNKSPDRLKVKAANIFFDPTEERGGKLGVPYINTFKGMQLTVFDDSFSDSQIKAMCAPMIQLLTHLCNGNQEYANWALNWLAIPLQKPGTKMDTFLLFHGHVQGAGKSLFFDRVIGRIYGDHMLTLGQGQLESQYNDWIDGKLYVVFEEIFEGKERYSAMGMVKQLTTGKSVFINKKFTSGWRQDNFVNSIFLSNHEQPLTAEEADRRAFVIYPKHSIPNDVRLAVSEALEDPDQVMLRAFYTYLMRKDVGDQNAHSHGLMTEDKQQLIELSRSSWERFYNQWKGGMIPHIPYQTCTSQDIFDVYRQWCTYNNERSTTQTRFMSFLGRREHKEVVRFIDRRSNKNGGFTYPVVQATALIINLPAIDESNIARSRQEVYGYEVNKFREAMNFYMPRHD* rep_hall_hmm common_virus C0 35978.0 0 35978 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote_CDS_0032 cloud direct high 2651 1.0 GCA_001656115.1_00374 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote cenote CDS 26508 26753 GCA_001656115.1 LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115.1_LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115_1_3 GCA_001656115_1_3@C0 26509 26754 GCA_001656115_1_3_33 GCA_001656115_1_3_33 - 48052 . pfam14549 DNA-binding transcriptional regulator Cro. Bacteriophage P22 Cro protein represses genes normally expressed in early phage development and is necessary for the late stage of lytic growth. It does this by binding to the OL and OR operator-regions normally used by the repressor protein for lysogenic maintenance. MKQKEIVKDLIAYFGTQTKLAEAIGVSQGTVTGWLNGTHGIRESNALKIEIVTQGQFKAIDLNPSLAKIKELKKAKTLSGY* mmseqs_cdd common_virus C0 35978.0 0 35978 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote_CDS_0033 cloud direct high 245 0.996 GCA_001656115.1_00375 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote cenote CDS 26899 27552 GCA_001656115.1 LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115.1_LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115_1_3 GCA_001656115_1_3@C0 26900 27553 GCA_001656115_1_3_34 GCA_001656115_1_3_34 + 48052 . COG1396 Transcriptional regulator, contains XRE-family HTH domain [Transcription]. MELKDRLRLARKAAKLSQAQVAESVKISQATYSELERGITKSTGKIVQIAQIMGVNVDWLATGEGQMHSTHQGTESDNLKPVRPARYAPVLNYVQAGQFTEVCADCYDDYLPVMGNYGDDDVYWLEIEGRSMENDFMSGEKVLINASRQPSPGNFVVARKMGENSATLKKYRPKGFDINGMEYCHLVPSNPEFPIIDSRFEPFEILGVAVERNQKLV* mmseqs_cdd nonviral_gene C0 35978.0 0 35978 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote_CDS_0034 cloud direct high 653 0.998 GCA_001656115.1_00376 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote cenote CDS 27758 27919 GCA_001656115.1 LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115.1_LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115_1_3 GCA_001656115_1_3@C0 27759 27920 GCA_001656115_1_3_35 GCA_001656115_1_3_35 + 48052 . . hypothetical protein MLQFIQTTLFGLSIATILLFLADGWIEQSEREAKIIADEYRSWYAEVGTDDKQ* . hypothetical_protein C0 35978.0 0 35978 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote_CDS_0035 cloud direct high 161 0.994 GCA_001656115.1_00377 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote cenote CDS 27906 28217 GCA_001656115.1 LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115.1_LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115_1_3 GCA_001656115_1_3@C0 27907 28218 GCA_001656115_1_3_36 GCA_001656115_1_3_36 + 48052 . . hypothetical protein MTSNKKLLTICDICERLPKIKLRAEHAQKIRDETVQHLQIYLASVEGNQPTHLSVLYEAYQSLIWLADFVTSTECRYVLPTQKLFMHEAMATCLAMYEQQSQI* . hypothetical_protein C0 35978.0 0 35978 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote_CDS_0036 cloud direct high 311 0.997 GCA_001656115.1_00378 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote cenote CDS 28227 28751 GCA_001656115.1 LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115.1_LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115_1_3 GCA_001656115_1_3@C0 28228 28752 GCA_001656115_1_3_37 GCA_001656115_1_3_37 + 48052 . PDB:1Z9F_A Single-stranded-DNA-binding-protein MSDLNQCQFIGRLGNDPEISQSKNGKSVARFSIAVSEKWTDDYGNRVERTEWVNISAFGGLADVIAKYLTKGSQVFISGKMQTREYTDKNGIERKAVSIIADNMQMLGSRPQNSGQTQNYQQQPAHNQAPQRTQQAAPGSHVQPYNPPVQYGNHSAPPIQAQYTQGVRDDDMPF* common_virus_hmm common_virus C0 35978.0 0 35978 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote_CDS_0037 cloud direct high 524 0.998 GCA_001656115.1_00379 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote cenote CDS 28971 29459 GCA_001656115.1 LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115.1_LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115_1_3 GCA_001656115_1_3@C0 28972 29460 GCA_001656115_1_3_38 GCA_001656115_1_3_38 + 48052 . . hypothetical protein MLIRQTPLAKRPGTLSNEQVEAWMNANPDRVQRLDNTAYDHSIIRSIKTKPEKRKQVKRLDSKAIKDALVKQQRQTPKKAPVTCSARPKKVAKRRNDWLQYLQFIGRPMSSREVREMFGITNPRFAAERINQDGEYISITKEMHKSRKTLIFRAIRAINYER* . hypothetical_protein C0 35978.0 0 35978 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote_CDS_0038 cloud direct high 488 0.998 GCA_001656115.1_00380 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote cenote CDS 29463 29771 GCA_001656115.1 LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115.1_LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115_1_3 GCA_001656115_1_3@C0 29464 29772 GCA_001656115_1_3_39 GCA_001656115_1_3_39 + 48052 . . hypothetical protein MKGYEKGEVWIKISTGDEVVIVRTIDNYVYFYRVKENRIGYAKSETFIINYCPKRIVNAGDNPKLLSLDVLISDFMSAFLMILCILLLIMANIALFRFLINF* . hypothetical_protein C0 35978.0 0 35978 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote_CDS_0039 cloud direct high 308 0.997 GCA_001656115.1_00381 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote cenote CDS 29780 30247 GCA_001656115.1 LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115.1_LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115_1_3 GCA_001656115_1_3@C0 29781 30248 GCA_001656115_1_3_40 GCA_001656115_1_3_40 + 48052 . . hypothetical protein MQTTFKAGDLVYYPSRGIEIYKLQESNRLDFPLEIKQGTTWTIFRSDGKANSLSDMIQLFHATEENCYLLSKLYGIGFEKPRTRQVVEHLLKTHKYVACYTSDFDETPSPDSVKNFITHIHDSATLPFVDDECNMWRYAVPFDIKTGEVITEIEE* . hypothetical_protein C0 35978.0 0 35978 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote_CDS_0040 shell direct high 467 0.998 GCA_001656115.1_00382 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote cenote CDS 30244 30462 GCA_001656115.1 LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115.1_LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115_1_3 GCA_001656115_1_3@C0 30245 30463 GCA_001656115_1_3_41 GCA_001656115_1_3_41 + 48052 . . hypothetical protein MMKKYTDGTRVVEARPMLDTEYFRDFDGDPNYQNSEPKTGMFVVFENNGLRMSYAFYPSQEKFFEKFSEIKE* . hypothetical_protein C0 35978.0 0 35978 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote_CDS_0041 cloud direct high 218 0.995 GCA_001656115.1_00383 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote cenote CDS 30459 30737 GCA_001656115.1 LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115.1_LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115_1_3 GCA_001656115_1_3@C0 30460 30738 GCA_001656115_1_3_42 GCA_001656115_1_3_42 + 48052 . . hypothetical protein MNKYCIEILASAPPRVYIGDNVAGGKVVAIKSDDPELVSTTWLSEKFGLSKSLIIRKLRPISQGNGKFLYPRDAAVQMLEDDKVKRGRPRKN* . hypothetical_protein C0 35978.0 0 35978 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote_CDS_0042 cloud direct high 278 0.996 GCA_001656115.1_00384 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote cenote CDS 30766 31803 GCA_001656115.1 LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115.1_LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115_1_3 GCA_001656115_1_3@C0 30767 31804 GCA_001656115_1_3_43 GCA_001656115_1_3_43 - 48052 . PDB:1Z19_B Integrase MFNFRQISVKVRAKMKLPKPRKRGNSYTIEIMLGGVRKFATRDTAKECTEWAAQQLLAYKAQVKTDKKQTPTLAELLNLHYEKVGKFKKTQTDKTYKKCLIRDFSWLVEKQVHEITGQDLTQWRNERLKSVSEGSVRREISYLSPIFTYAVKELFLINNNPFEFVKSPSQPAPRYRRITQDEIDAIVTAAGYSTDTPPSQSGHYTAWAFLFAIETAMRRGEILNIKRSHIKDNYITLPETKNGESRHVPLSPRARALLAQITHDNEYLIPMSKEAFVSAWRRLKSKSGVSDLGFHDTRHEAISRFVQNLKMPVEKLAKVTGHKDIKTLINVYYNPTIDELVAYFQ* common_virus_hmm common_virus C0 35978.0 0 35978 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote_CDS_0043 cloud direct high 1037 0.999 GCA_001656115.1_00385 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote cenote CDS 32550 32807 GCA_001656115.1 LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115.1_LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115_1_3 GCA_001656115_1_3@C0 32551 32808 GCA_001656115_1_3_44 GCA_001656115_1_3_44 - 48052 . PFAM:PF10078.8 transcriptional-regulator MTKSIHSDQMIALRAWLKAERRNQKLSMRALAARMDRPHSFVQRVEEGDRRLDVVEYIWYCEALGINPSLGLQIILECHKVNITA* phrogs_hmm hypothetical_protein C0 35978.0 0 35978 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote_CDS_0044 persistent direct high 257 0.996 GCA_001656115.1_00390 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote cenote CDS 32908 33798 GCA_001656115.1 LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115.1_LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115_1_3 GCA_001656115_1_3@C0 32909 33799 GCA_001656115_1_3_45 GCA_001656115_1_3_45 + 48052 . COG2378 Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains [Transcription]. MDNKHERLADRFADIFMRLSSHEKLDTHELAAEYQVSDKTIRRDLLRMERYLPLVRKPKMVYLDKSKQFNLSEKEFGELIRLIGVHRLIPNMDIQFLRDMLKQNTRQLQIVGYEYENIEPFFDIIPLIKNAIAEQQIIRLDYKNQTRLVHPYKLLNHRGCWYLIGTQNNEIKTFRLSKILNLSILQGQSFVPDDKIWQLIDQGQGIWFGHQLTNVLIKIDEYARGYFLQKQILPNQKIIKSLEDGGLLIQCSVYQKQQIFPMIRSWIPHLTIIEPAEWRDDLNHQLKKYLNYLTEC* mmseqs_cdd nonviral_gene C0 35978.0 0 35978 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote_CDS_0045 persistent direct high 890 0.999 GCA_001656115.1_00391 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote cenote CDS 33801 34733 GCA_001656115.1 LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115.1_LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115_1_3 GCA_001656115_1_3@C0 33802 34734 GCA_001656115_1_3_46 GCA_001656115_1_3_46 + 48052 . COG0464 AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms]. MPINTNQTTDLNRFQNRPKSSAKIAFELSDALYKMDDLVLPIKTKADLERTIGLRQYQSEVFEHWGFSETHKFDNKMIINLYGEPGTGKTMSAHAIAHALGKKLILINYGDIESKYVGETPKNIQAAFEFAKENDAILFFDEADAILSRRVTNMTSATDTSVNQTRSVMLTLLNDYNDTVIFATNFISNYDPAFMRRILIHIEYTLPDEETRTYLFNKYIPNKLPHSIDLPTIVKLSEGLSGSDISNAILLAAFSAKTEGCDLVTHENLQNKIEAIQRSKSENSRKETKFQTRVVSEEYVKSQLNDGETI* mmseqs_cdd common_virus C0 35978.0 0 35978 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote_CDS_0046 shell direct high 932 0.999 GCA_001656115.1_00392 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote cenote CDS 34730 35089 GCA_001656115.1 LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115.1_LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115_1_3 GCA_001656115_1_3@C0 34731 35090 GCA_001656115_1_3_47 GCA_001656115_1_3_47 + 48052 . . hypothetical protein MIPFLLAGALIAGVFVATAFWKEIKSFIQASIERIKTHLIPSMIVGFKTYLQTGNALYATAKALQKFFSKNERGQWQETIMTRNVPANEIPEDIRRKVENNRGPVDITDEVQAELHLEV* . hypothetical_protein C0 35978.0 0 35978 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote_CDS_0047 shell direct high 359 0.997 GCA_001656115.1_00393 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote cenote CDS 35091 35498 GCA_001656115.1 LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115.1_LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115_1_3 GCA_001656115_1_3@C0 35092 35499 GCA_001656115_1_3_48 GCA_001656115_1_3_48 + 48052 . . hypothetical protein MNNDSTKIYDNLKDLEQAAKEIISRNILPKLIKHNQTSAAEFVSSFSKGADDFILQTERDEGLNFVAGYAILNLLESSTMQIDFDFYFQNEKGSWINKKKQSKTFNVDEYLNPQAQASLLEHQSLKFDIDKPLDR* . hypothetical_protein C0 35978.0 0 35978 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote_CDS_0048 shell direct high 407 0.998 GCA_001656115.1_00394 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote cenote CDS 35498 35977 GCA_001656115.1 LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115.1_LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115_1_3 GCA_001656115_1_3@C0 35499 35978 GCA_001656115_1_3_49 GCA_001656115_1_3_49 + 48052 . . hypothetical protein MEIIIFIVVGLFVLGAILAILKFIWGLFKKIWLIIIGIAVLFGISWLVKYGFSIIGLDIPIWIIFILTLFCLGYLSHNNEKKVHRAVAKYFTIKEMGDLTDITNFLDEKSIKYDQEILSQAIVKLVEDNQIIEQLPGQLWRSTQSGNFLEPIETVHIEI* . hypothetical_protein C0 35978.0 0 35978 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote_CDS_0049 shell direct high 479 0.998 GCA_001656115.1_00395 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote cenote tRNA 54146 54229 GCA_001656115.1 LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115.1_LXHW01000001.1 GCA_001656115.1|LXHW01000001.1 GCA_001656115_1_16 GCA_001656115_1_16@C0 54147 54230 tRNA-Leu tRNA-Leu - 218171 . tRNAscan-SE score: 55.3 Leu NA tRNAscan-SE . C0 68952.0 0 68952 GCA_001656115.1|LXHW01000001.1@region_1_68952@tool_cenote_tRNA_0001 . . . . . . GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote cenote tRNA 32271 32343 GCA_001656115.1 LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115.1_LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115_1_3 GCA_001656115_1_3@C0 32272 32344 tRNA-Thr tRNA-Thr - 48052 . tRNAscan-SE score: 79.7 Thr NA tRNAscan-SE . C0 35978.0 0 35978 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote_tRNA_0004 . . . . . . GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote cenote tRNA 32109 32189 GCA_001656115.1 LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115.1_LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115_1_3 GCA_001656115_1_3@C0 32110 32190 tRNA-Tyr tRNA-Tyr - 48052 . tRNAscan-SE score: 61.0 Tyr NA tRNAscan-SE . C0 35978.0 0 35978 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote_tRNA_0003 . . . . . . GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote cenote tRNA 32005 32078 GCA_001656115.1 LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115.1_LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115_1_3 GCA_001656115_1_3@C0 32006 32079 tRNA-Gly tRNA-Gly - 48052 . tRNAscan-SE score: 78.4 Gly NA tRNAscan-SE . C0 35978.0 0 35978 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote_tRNA_0002 . . . . . . GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote cenote tRNA 31918 31992 GCA_001656115.1 LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115.1_LXHW01000014.1 GCA_001656115.1|LXHW01000014.1 GCA_001656115_1_3 GCA_001656115_1_3@C0 31919 31993 tRNA-Thr tRNA-Thr - 48052 . tRNAscan-SE score: 74.7 Thr NA tRNAscan-SE . C0 35978.0 0 35978 GCA_001656115.1|LXHW01000014.1@region_1_35978@tool_cenote_tRNA_0001 . . . . . .