core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	1	569	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	1	570	GCA_001656475_1_15_1	GCA_001656475_1_15_1	+	261913	.	PDB:5EMI_A	Cell-wall-hydrolase-autolysin	AAQSTKNNQSTQSTATHRVQSGESLTAIARRYNISLHALAKENGLSVTDGVLIGQTLKLPSDAKAESSTPSRLGNAKNNSTRTPANTNIGITENYTVKAGESLTMLSNRFGVAIGDLAAANGLASNANLRIGQTLKVPKLTTTYTVKAGDGLIALARRYGISTQELAKMNNLEPTADLRIGQVLTVPNK*	common_virus_hmm	common_virus	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0001	persistent	direct	moderate	437	0.768	GCA_001656475.1_00822
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	730	2562	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	731	2563	GCA_001656475_1_15_2	GCA_001656475_1_15_2	-	261913	.	COG1274	Phosphoenolpyruvate carboxykinase, GTP-dependent [Energy production and conversion]. 	MTAKITAPDFVRHQALIHWVAEIAALTKPAAIEWCDGSEEENQRLIDLMIKNGTMIKLNEDKHPNSYLAFSDPTDVARVEDRTYICSKEEIDAGATNNWVEPSQMRTKLNNLFDGCMAGRTMYVVPFSMGPLGSHIAHIGIEITDSPYVVVSMRKMARMGKEVYDVLGADGEYVPCVHTVGSPLTEGQKDVAWPCNDDKYIVHFPETREIWSYGSGYGGNALLGKKCLALRIASAMGREQGWLAEHMLILGVTNPQGKKHYIAAAFPSACGKTNFAMLIPPAGYEGWKVETVGDDIAWIKPSEDGKLYAINPEAGFFGVAPGTNTKTNSNCMSTLGSDVIYTNVAVTDDGEVWWEGKTKEAPNNLTNWKREPHTGEERAAHANARFTVSAKQCPSIDPQWENPEGVPISAFIFGGRRADTVPLVSEAFDWVDGVYKAATMGSETTAAATGQQGVVRRDPFAMLPFAGYNMADYFNHWLQMGENLGKKAEAAGNQLPKMFKVNWFRRDENGDFVWPGFGQNMRVLQWIIERCEGTANAVRTPIGLVPTYDDINWDQSDFTKAQFELVTSQDKDAWIKELESHAELFDKLGERMPAALKAHNAKLKADIEQV*	mmseqs_cdd	nonviral_gene	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0002	persistent	direct	high	1832	0.999	GCA_001656475.1_00823
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	2860	4278	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	2861	4279	GCA_001656475_1_15_3	GCA_001656475_1_15_3	+	261913	.	PDB:3BH0_A	Helicase-ATPase	MAKAKSSYICQNCGAIYGKWAGQCTDCGEWNTLVEAPNTSLPHHHKSKTTTVPRKTANYAGAVSAVMTLDHVGVTLETRMPTGIGEFDRVLGGGLVAGSVVLIGGDPGIGKSTILLQTAINMASSNSLAGSALYITGEESLSQVAMRAVRLGLPTDRLRVLAETNVDTICAALTAEQPAIAVIDSIQTLFTEAIQSAPGGVAQIRESAAVLTRYAKQTGTALFLVGHVTKEGALAGPRVLEHMVDTVLYFEGESDSRFRMIRAIKNRFGAVNELGIFGMTDTGLKEVANPSAIFLSRYDKPIAGSVVMVSREGTRPLLVEVQALVDTAQAQPRRMALGLDYQRLSMLLAVMHRHGGIHTSGMDVYVNVVGGVKVMETGSDLAVLLACASSIREKALPNRLCVFGELGLSGEIRPVPNGQERLKEAMKHGFTHAIVPRANAPATNHPQFKNIQIIAVDRLDEAIYQAFEINVG*	rep_hall_hmm	common_virus	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0003	persistent	direct	high	1418	0.999	GCA_001656475.1_00824
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	4320	5039	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	4321	5040	GCA_001656475_1_15_4	GCA_001656475_1_15_4	-	261913	.	COG1118	ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]. 	MSIKIQNIHKTFGDFVALGEISIDISTGELTTLLGPSGCGKTTLLRIIAGLENADNGRIYFDSIDVTDIPVQHRGIGFVFQQYALFRHQTVAQNIAFGLTLLPRNTRPSANAIDRRVDELLDLVQLSHTKTRYPHELSGGQRQRVALARALATKPKLLLLDEPFGALDAKVRKSLRDSLKDIQREIGITSILVTHDQEEAQAISDKIVIMNHGQIEQIGTPSKLFAQPSSDFVVDFLGL*	mmseqs_cdd	nonviral_gene	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0004	persistent	direct	high	719	0.999	GCA_001656475.1_00825
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	5132	5971	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	5133	5972	GCA_001656475_1_15_5	GCA_001656475_1_15_5	-	261913	.	COG4208	ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]. 	MANTSSYSYQKNPATRDKPWVKWSLIGIAVVFMGVMLVVPLVSVFYEALKEGWQAYQEALLEPDALASIKLTLITAVIILPINTIIGVALAYLITRHQFRGKFVITTLLDLPFAVSPVVAGLMFVLVFGANTRLGGYLESMGIQVIFATTGIVLATLFVTFAFIARELIPLMQAQGDSEEQAALTLGANGWQMFWKVTLPNIKWALLYGIILTNARAMGEFGAVSVVSGHIRGETNTVPLMIEIAYNEYAFTLAFALSSLLALLALVTLVAQGLMSHKK*	mmseqs_cdd	nonviral_gene	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0005	persistent	direct	high	839	0.999	GCA_001656475.1_00826
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	6023	6901	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	6024	6902	GCA_001656475_1_15_6	GCA_001656475_1_15_6	-	261913	.	TIGR02139	sulfate ABC transporter, permease protein CysT. This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]	MPNQPMPLKNRARRVMPFFGLSMGISIFALGLLVILPFLMMILTTLQMGFGDIIRTILEPQVFAAIKLSLSMAMLATLTNLIFGTLVAWVLVRYEFWGKSFLNALVDLPFALPTAVTGIALATLYAPNGLFGQWFTRLGMLLFNEPIKIAFTPIGIWLALVVVSFPFIVRAVQPVLAELSVEFEEAAAVMGAGRLTTFCRVILPEITPAMLIGAGMMFARATGEYGSVIFIAGNIPMQSEILPLIIVSKLEQFDVAGAACVSLFMLLISLVVLFTINFAQWKLSARLGAKTN*	mmseqs_cdd	nonviral_gene	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0006	persistent	direct	high	878	0.999	GCA_001656475.1_00827
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	7235	7663	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	7236	7664	GCA_001656475_1_15_7	GCA_001656475_1_15_7	+	261913	.	.	hypothetical protein	MMKNKWMRGLAILALSLPTVTYAKTAAPKSPEAPKESLTQEEQMAIDFCDFSAYGVMHIAAEHQSGVTKSEALTNHDERMAKLRDIDPETATMLDQYWKGVIDRIFQESVQKTDAEKQAFVMGVGESSFYSCLDQVLKTPKN*	.	hypothetical_protein	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0007	persistent	direct	high	428	0.998	GCA_001656475.1_00828
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	7694	8869	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	7695	8870	GCA_001656475_1_15_8	GCA_001656475_1_15_8	+	261913	.	PDB:1OYW_A	ATP-dependent-DNA-helicase	MTETTVKNFDDLPLSEPILKAVQALKFDQLTPIQAQILPHTLANQDAIGQAQTGTGKTATFLITIIESLLKRPFQADEIRYLGEPRALVLAPTRELAQQILADCRELTRFSQLYNLCITGGADFDKQLEQLHKRPLDILIGTPGRIIDWVNKGELFLDRIEVFVLDEADRMLDMGFIPDIKRIVRHMPSNTERQSLLFSATFNQDVMNLAYRWLHQPAFVEIAPESKTNQAIDQQFYLVTEREKTSALKQILADDSVKKTIIFANRKDQVKRLYDYLRRHHKVTMLSGDVAQQKRERYLQRFKDGEVNVLVATDVAGRGIHVDDVTHVINYTLPDMPDDYVHRIGRTGRAGLSGVSISFVGENDAFNLPALERHVDQKFKLNQFEFLDEHK*	common_virus_hmm	common_virus	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0008	persistent	direct	high	1175	0.999	GCA_001656475.1_00829
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	8883	10058	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	8884	10059	GCA_001656475_1_15_9	GCA_001656475_1_15_9	+	261913	.	COG0635	Coproporphyrinogen III oxidase or related Fe-S oxidoreductase [Coenzyme transport and metabolism]. 	MYPDLLDPAHIPLSLYIHMPWCVKKCPYCDFNSHALPSQAPFESYIEALLSDAVSQQSLVSNRQIDTVFIGGGTPSLLPIESFKRLFDGLRLIYDFAPTCEITLEVNPGTLEHSPFDEYLNIGINRLSIGVQSFDHNALTALGRIHNPNQASNAIRAARIAGFDRVNADLMYGLPNQNSSKAVNDIQTAIDAGATHLSWYQLTIEPNTTFYRTPPQLPDEEIMAEIETLGQSVLTKHGFYNYEVSAWHGPNDAPCRHNLNYWQFGDYLAIGAGAHGKLTLKNHPNYQDGIYRYQKSRLPKDYLAFENAPKMVNFERIADDNLPFEFMMNALRLKDGVSTDMFEIRTGLLISTIDNEMLPLQHQGLMVLDPLRIAPTRLGFRYVNYLVSQFI*	mmseqs_cdd	nonviral_gene	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0009	persistent	direct	high	1176	1.0	GCA_001656475.1_00830
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	10153	10293	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	10154	10294	GCA_001656475_1_15_10	GCA_001656475_1_15_10	-	261913	.	COG5510	Predicted small secreted protein  [Function unknown]. 	MKKVLIASIAAVVVLTGCNAIKGLGKDVSKAGEAVSDTAQKVEKKI*	mmseqs_cdd	nonviral_gene	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0010	persistent	direct	high	140	0.993	GCA_001656475.1_00831
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	10541	11086	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	10542	11087	GCA_001656475_1_15_11	GCA_001656475_1_15_11	+	261913	.	COG0219	tRNA(Leu) C34 or U34 (ribose-2'-O)-methylase TrmL, contains SPOUT domain [Translation, ribosomal structure and biogenesis]. 	MSQFSDALIHIVLFSPKIPNNTGSIIRLCANTGAQLHLVKPLGFELDDTRLKRAGLDYHEYATLSVHDNWQETKSALKSLGVERIVAMTTKFSRPFYEYQFKLDNDQHKVALVFGSETDGLPDDVRADIGANHWLRLPMLPDSRSLNLANSVGICLYEVWRQLGFVGDVGQSVGYHKPTSR*	mmseqs_cdd	nonviral_gene	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0011	persistent	direct	high	545	0.998	GCA_001656475.1_00832
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	11295	11663	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	11296	11664	GCA_001656475_1_15_12	GCA_001656475_1_15_12	+	261913	.	PFAM:PF12206.7	head-closure-Hc1	MGLNAEISTEIAQAFDGDLKDVVKDFTVVRVILSDDDWAVNDTPQVLSTINYSGRGVFTGFYAHEIDNKTIMQQDTKLICLQSELTDTPQINDSINQMKVINISQDPAGICYFIQLRGTSGD*	phrogs_hmm	hypothetical_protein	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0012	persistent	direct	high	368	0.997	GCA_001656475.1_00833
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	11653	12000	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	11654	12001	GCA_001656475_1_15_13	GCA_001656475_1_15_13	+	261913	.	PFAM:PF04883.11	tail-component	MGIKWHKKMTVEPIADKIDTTYRKFAIDCYNNVIALSPVRKGRYKNAHHISIGTKSLNENGGGVELVLGIPKHTYPLIYIQNNLPYALRLEHGWSQQAPTGVYGNAFNSALGALG*	hallmark_hmm	common_virus	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0013	persistent	direct	high	347	0.997	GCA_001656475.1_00834
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	11997	12197	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	11998	12198	GCA_001656475_1_15_14	GCA_001656475_1_15_14	-	261913	.	PFAM:PF16777.4	transcriptional-regulator	MPKITSTPKSQTQIQKESNERRGVKNKAFTLKLDDIELIKSLSKRLNIPQNQLIMDAVRAYQRQLD*	phrogs_hmm	hypothetical_protein	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0014	shell	direct	high	200	0.995	GCA_001656475.1_00835
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	12783	13388	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	12784	13389	GCA_001656475_1_15_15	GCA_001656475_1_15_15	+	261913	.	PFAM:PF08291.10	Peptidase-M15	MNSFHIEQTLLTHIKSWEHFDDIPLAKENRNFKPPDGIWGDKSKQALKSAINGGKIITITKNISLNELLASNTATARKIDNMPSQQVLQNLIDASVNLYQPVREILGVAMIISSGYRCPALNKAVGGSKTSAHMSGFAIDFTAPKFGTPKIIVPHIVKILKQKGIGFDQAIIEYPKSPRSWVHLGYKHPSGKQRGSSFVIG*	common_virus_hmm	common_virus	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0015	shell	direct	high	605	0.998	GCA_001656475.1_00836
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	13467	13643	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	13468	13644	GCA_001656475_1_15_16	GCA_001656475_1_15_16	-	261913	.	.	hypothetical protein	MKNMQTLNRELKMAELERIRMEAEKLRAETVKLQKEANWFPWLSLAVALIALIVALVK*	.	hypothetical_protein	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0016	shell	direct	high	176	0.994	GCA_001656475.1_00837
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	13757	14374	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	13758	14375	GCA_001656475_1_15_17	GCA_001656475_1_15_17	-	261913	.	PFAM:PF10078.8	transcriptional-repressor	MMFCATLSQTFNFAKIMTYKIIIDGATSQAITDKATAYANYRAVCRDYDNKPKKVELVHDDKELSTKAPNMMLLDNNDVFSANDVLCQAMQTLGINIKGLKDKIKTSGLKLSNSRIDGWIRPSDDRHFVQMHNDELVAVLKLLLSDTVATIKSPENIVALRKKLGLTQSELAEKFGLKSGFRQVARWESGEQEMPDAKWKKMQDF*	phrogs_hmm	hypothetical_protein	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0017	shell	direct	high	617	0.998	GCA_001656475.1_00838
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	14780	15916	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	14781	15917	GCA_001656475_1_15_18	GCA_001656475_1_15_18	-	261913	.	PDB:5U30_A	endonuclease	MKTLKLCIKDKHATQLNRLSGSVNFVWNYVNDLGYKYLQKTGKFFSAYDLNKYTKGSGELLGLHSQTIQAINETHAKSRRQFKKAKLKWRTNNSKSKHKSLGWIPFKQSAIKHIATHQTGKKGLKSTLQLSLAKGQKLIIDLWDSHNLSLYQINTCELVQDSRNRWYACITVKEYPKTQCGTGSVGIDLGLKDSATTSNGDKLQIKQTLKYAKDLAIAQRAKNKQRVKAIHAKIKNTRLDLIHKFTTQLVRDNAIVVVGDVKSNQFNSKKGKLAKSVYDAGWFELKRQLTYKCKHAGCRLEIVNERYTTQICSCCGDMSSSPKGRTDLGIREWACAECGTRHDSDLMPVRTFLRLGLTVWEQESPHLGREGSQKRPPT*	common_virus_hmm	common_virus	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0018	shell	direct	high	1136	0.999	GCA_001656475.1_00839
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	16070	17104	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	16071	17105	GCA_001656475_1_15_19	GCA_001656475_1_15_19	-	261913	.	PDB:1Z19_B	Integrase	MGVYPLISLKQAREKLLSAKTQLLHGKDPKLEEQIAKQAYINADTFYECFLEWYDKSAVITKKQASDIKRSFELYVFPVIGSLPINDITLQQYIIIIESISEKTPGIAERILTNTKQMLKWAKKREIVTHNILADLELSDFNLVRVKRKRYLSDDEIILFYKALYGSKISYRNRLATELALMFGCRGIELRRAKITDFQDGVWTVPPENHKVGHITQQPLIRPILPPMQALIDEAIAISRSEYLFDRRGEMLEKNAFLDITTGLIHWIDRHCGVQLPRFTFHDLRRTARTNFSAFTSRDIAEIMIGHTVGNMQQVYDHYNYLPQQTAAYEQWLKKLAELKQIAL*	common_virus_hmm	common_virus	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0019	shell	direct	high	1034	0.999	GCA_001656475.1_00840
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	17127	17318	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	17128	17319	GCA_001656475_1_15_20	GCA_001656475_1_15_20	-	261913	.	.	hypothetical protein	MINGEQALPGQIDQMLERAKAESEKSRANPYGKRQTQQVSYQQNSQARQHPQRQDCLSITLSI*	.	hypothetical_protein	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0020	.	unmatched_CDS	none	0	0	.
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	17334	17795	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	17335	17796	GCA_001656475_1_15_21	GCA_001656475_1_15_21	-	261913	.	PFAM:PF05037.12	single-strand-DNA-binding-protein	MNYFIACNDADAAKFGASNFIDGDTAQVVKITQAYYTQNDKGTQTLHLSLISSEKQTGDVAIHFANGQGERLIGYNLINAILKVTGTAGITQAQGTYSAYDFNAGGTVNKQGMVAPELVGKFFGAIFSKNYRINDKGEEKYSINLFGVYHAQT*	phrogs_hmm	hypothetical_protein	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0021	shell	direct	high	461	0.998	GCA_001656475.1_00841
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	17792	18421	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	17793	18422	GCA_001656475_1_15_22	GCA_001656475_1_15_22	-	261913	.	CDD:cd01120	RecA-like_NTPase-recombinase	MAIGAFILGQSGTGKSFSLRNLNPDNVGFINVVGKYLPFRGAEFKQVVTDDPNLICDILMKSKAPIIIIDDFQYLMSNKYMRDSEVKGYDKYTENGKNIWRILNTVNYHMKPYQRVYILSHTDEVDGKTKLKTIGKLLDEKITPEGMVGIVLQTHIESGKNYFITKNNGFTTVKTPFEMFDNDLITNDLEMVDNAICNYYNLPKNGENS*	common_virus_hmm	common_virus	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0022	shell	direct	high	629	0.998	GCA_001656475.1_00842
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	18524	19153	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	18525	19154	GCA_001656475_1_15_23	GCA_001656475_1_15_23	-	261913	.	PFAM:PF05565.10	resistance-protein	MNDRDFMDFIELQFSEEELAQFDDEQQYYDLLAHEFGLPFESEAKKEAQISKEAEESLIRLDEMLENGETPSDEEVNDLLDLRGDLHDKLLNYGKFIKNNSSDIDALDGEIRRLSAKKRALNNLNECLKSNMLAAMQANDIKKVDDPIIPIRRQKSIPSVCLDINADRLPKEFQKMEIKANNVAIAKALKDGIVIDGANLVQNEHIRIG*	common_virus_hmm	common_virus	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0023	cloud	direct	high	629	0.998	GCA_001656475.1_00843
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	19150	19425	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	19151	19426	GCA_001656475_1_15_24	GCA_001656475_1_15_24	-	261913	.	.	hypothetical protein	MAVYRRQGIDMQTVTATIRLGKSEQVITGRIGYQDGQYHSVILSVLVYLGNHEIELDLQAHDDWQIAEVLAIQAGLFEPTALSENIKGAAA*	.	hypothetical_protein	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0024	shell	direct	moderate	246	0.891	GCA_001656475.1_00844
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	19597	19857	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	19598	19858	GCA_001656475_1_15_25	GCA_001656475_1_15_25	-	261913	.	.	hypothetical protein	MALCNEQCYRYEDYHNAYTIYSISPTPHYSFHIDKIGGDYLVMNGNECCKYTDTSRKALDFIRKQLSYSLDADVQAVVASMPKTLD*	.	hypothetical_protein	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0025	cloud	direct	high	260	0.996	GCA_001656475.1_00845
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	20178	20786	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	20179	20787	GCA_001656475_1_15_26	GCA_001656475_1_15_26	-	261913	.	.	hypothetical protein	MLRQAMTVFDFLRIKYPDNTHRAAVYLLPALLSLVGTSVLAYLASIHTSDQNINFLLSRKFEDAFTLLLVLPGFYIAALSAIAAINRPAIDEFIHGKTPYLVKQELNRPKGEVYHQPLTRRLFLSLLFAYLASISLFLALSLIAIRSIYSIELLADFAQLKTNFAIGIYSLIMFAVFFIITQIFTLSLVGISYLGYRSMAND*	.	hypothetical_protein	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0026	cloud	direct	high	608	0.998	GCA_001656475.1_00846
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	20809	21780	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	20810	21781	GCA_001656475_1_15_27	GCA_001656475_1_15_27	-	261913	.	.	hypothetical protein	MAVNIRFDYYTLAVYKKRKREPKDLAKQYFGKITLNDLGQWLYSYSQNNNLGDHGEFIISYRNHKKWIKWVAAEYQDDYLKLLLTYNDKEIDARMLANQQDGVLVQAIPGEEYGQRTLLHIVIDTKSDKISVQKIEGFTKVYLIRLIKALLSLTAADDVWKEKDPVTTEEIDCMPNIELDNVVSDEVMKTIKDGGLRGIVFLEREEVNSKFDFEHHLTTASTEIVIRTEGESFIQYTMHKLFDWIKVVQKEKSRLDNPRVSLLIKDPQTGSEVKHEVLNGVIDGFAQKTFLGWDERKPETTQDLSSEKPVPIKQFYDKMIENF*	.	hypothetical_protein	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0027	cloud	direct	high	971	0.999	GCA_001656475.1_00847
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	21833	22531	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	21834	22532	GCA_001656475_1_15_28	GCA_001656475_1_15_28	-	261913	.	PDB:2FJR_A	Repressor-protein-CI	MELKDRLKYARKAKGLTQKQVTEQIKGLSQSAYSQLESGKSKSTTRAIELAHLFGVDVHWLISGEGEMTKNNYKLTPITEWDDSTPLDDEVEIPFYKDIAFACGHGAVNDAVTHETRKLRMGKRTLSNLGVMSENAFAVTARDDSMTPYVQDGDTIYIDKGRKEIKDGRIFAIRFGELCLCKRLYRLPDGGVRIVSDNAAEFPEQVATKQQISDGEFEVIGWVWSVSRLERW*	common_virus_hmm	common_virus	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0028	cloud	direct	high	698	0.999	GCA_001656475.1_00848
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	22674	22904	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	22675	22905	GCA_001656475_1_15_29	GCA_001656475_1_15_29	+	261913	.	COG4197	DNA-binding transcriptional regulator YdaS, prophage-encoded, Cro superfamily [Transcription]. 	MSKIKNEAVQRLIEFFGSQMKLADALDVEQSAVSGWLNNRFYISRDNADLAESLTNGVVRSEELRPRKKTKTPSSN*	mmseqs_cdd	nonviral_gene	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0029	shell	direct	high	230	0.996	GCA_001656475.1_00849
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	22951	23361	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	22952	23362	GCA_001656475_1_15_30	GCA_001656475_1_15_30	+	261913	.	.	hypothetical protein	MNSIILTEISHESNAFNYPRTHLDAQEQQIAEFIKNGGKVINLDNSEQPKKKSVKKRDFNNQRINSKMHLVLCYLKKSGKRMTGTQIQEKFGIWASTLGSQTRLLNAQAGKTLIESEKIRDENNRLKRVYYAAEVN*	.	hypothetical_protein	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0030	shell	direct	high	410	0.998	GCA_001656475.1_00850
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	23361	24344	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	23362	24345	GCA_001656475_1_15_31	GCA_001656475_1_15_31	+	261913	.	COG3756	Uncharacterized conserved protein YdaU, DUF1376 family [Function unknown]. 	MHYYQFNPSDFKAKTRHLTHLERAFYRELIDLYYETEKPITGDLPKLERLLLAKTDDEKQALLSVLDEFFVFKNDAYHDFEITAKIRAYKWADKKRNAQGTQNGTQAEQNGTQNGTDKERKQRHKNKVNYLRALLSDHNIQTPANSSITVLTDLCNEHKIAIDWDMVERQAEQNGTPKNERITNNHKPITNNQEPNINKESASASKKFTKPSFEQVRDYFTELKHNNPSEQASIFLDFYDSNGWKVGRNPMKDWQATVRNWIKRDGLGQQNKQENYNATHQRTPKINPAEEYYNNAMAEYERYYGSASQSTTGQDFAGNVYDVEAAI*	mmseqs_cdd	nonviral_gene	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0031	cloud	direct	high	983	0.999	GCA_001656475.1_00851
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	24325	24846	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	24326	24847	GCA_001656475_1_15_32	GCA_001656475_1_15_32	+	261913	.	PFAM:PF06992.10	P-like-helicase-loader	MWKLQFKTKMTQGAWDLQTAQLWAIALADLEITEAMFATAYRKCLTLKWMPTTPADFAELAFANEIYPDCRQAYLDATGSRYSHEVVYETANRVGFYEIRTKSENEIFGVWSKTYTKVCAEHAKGARFSLPQAQQIEQKQETQNIISAEMQNEINRFLTTFGRKKHGLQTTEV*	phrogs_hmm	hypothetical_protein	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0032	cloud	direct	high	521	0.998	GCA_001656475.1_00852
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	24857	25204	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	24858	25205	GCA_001656475_1_15_33	GCA_001656475_1_15_33	+	261913	.	PFAM:PF06356.10	Endonuclease	MSMKYKNKKVKIDDITFDSKKEANRYLVLKQMQNSGLISDLTLQKPFILVSGTKIAGELRKRPSVRYIADFVYFDNRVGKTVVEDVKSVITKKDKVYRLKKHLMKTVHNIDILEI*	common_virus_hmm	common_virus	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0033	shell	direct	high	348	1.0	GCA_001656475.1_00853
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	25205	25912	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	25206	25913	GCA_001656475_1_15_34	GCA_001656475_1_15_34	+	261913	.	TIGR02170	thymidylate synthase, flavin-dependent. Two forms of microbial thymidylate synthase are known: ThyA (2.1.1.45) and ThyX (2.1.1.148). This model describes ThyX, a homotetrameric flavoprotein. Both enzymes convert dUMP to dTMP. Under oxygen-limiting conditions, thyX can complement a thyA mutation. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism]	MSKLYEQSPTAVIYKDHMGDDNSVVNAARVSFAKDASNFTPEQNKKLIKYLAKHNHWTPFAHAFVLDIASRGNMPIPLRYASAHTGRYGGCFVAETMVCLKSKSPSDPSPYYANIIDATSDTLIWNGEEFVEHDGVICNGVQEVINYDGLCGTRGHKVFTESGIVSLEYARNNMLPIIDCPLPSSTTIYPIQGTRPMMTYSDGVVVPVYDILNAGKDHKYMANGKLVHNSDKVNP*	mmseqs_cdd	common_virus	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0034	cloud	direct	high	707	0.999	GCA_001656475.1_00854
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	26342	26833	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	26343	26834	GCA_001656475_1_15_35	GCA_001656475_1_15_35	+	261913	.	PFAM:PF05772.11	NinB/-Orf-homologous-recombination-mediator	MMKQVFRIISESVMKHCFTEIVKQYESGQVCSVVITDKNETRTNAQNRLYWLWLKQIKDKTGQDDDDLHVMFKRLFLAKIYARDDGEMAQLFESLNTLKRQPNYEQQVALPFAKRFVTTTQATTAQLSEYLNEIEVWAFKNGIALSVPDDLKWIKDDEKISIS*	phrogs_hmm	hypothetical_protein	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0035	shell	direct	high	488	0.992	GCA_001656475.1_00855
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	26843	27022	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	26844	27023	GCA_001656475_1_15_36	GCA_001656475_1_15_36	+	261913	.	.	hypothetical protein	MTTYYNEQNNQLAKVNSSKADKDGNIWVEIDGKAPVPMNYDDFIKNFRSMSNEFSRKAR*	.	hypothetical_protein	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0036	shell	direct	high	179	0.994	GCA_001656475.1_00856
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	26997	27266	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	26998	27267	GCA_001656475_1_15_37	GCA_001656475_1_15_37	+	261913	.	PFAM:PF11753.7	nucelotide-kinase	MNSQEKHDEVIYQSITGDAVNHPSHYTSDPSGIECIQITRHRNFNIGNAIKYLWRAGLKDGNSDIQDLQKAVWYIQDEIERLQTQKGNG*	common_virus_hmm	common_virus	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0037	shell	direct	high	269	0.996	GCA_001656475.1_00857
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	27297	27689	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	27298	27690	GCA_001656475_1_15_38	GCA_001656475_1_15_38	+	261913	.	PFAM:PF06530.11	anti-termination-protein-Q-like	MSNEKLEAYKKEFIEWGRWVRCDPDRLSYPSPWFEMIMRDNIPCPSVSPNITDDRAMAIDKAVSRLSRYSVLQYQIFVLYFAKNIPEYKIAKMADMRVFSNGRIKNARNIIKENLSGAMGYVIAFLENNA*	phrogs_hmm	hypothetical_protein	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0038	shell	direct	high	392	0.997	GCA_001656475.1_00858
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	27798	28223	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	27799	28224	GCA_001656475_1_15_39	GCA_001656475_1_15_39	+	261913	.	PDB:3P9A_H	Terminase-small-subunit	MANKKPKMGRPSIFTDELANEICERVSLGRSLRSVCLDKDMPAMSTIMDWLNHNEDFSEQYRRACEDRETTHFEEMLTIADEVLPETAEVARAKLRIDTRKWVLARMNPKKYSDKVQEDNADNAVSLMAQFMKELGEKQGG*	hallmark_hmm	common_virus	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0039	cloud	direct	high	425	0.998	GCA_001656475.1_00859
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	28224	29696	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	28225	29697	GCA_001656475_1_15_40	GCA_001656475_1_15_40	+	261913	.	PDB:2O0J_A	Large-Terminase	MFDKLKDPLYRLNHLYYITDKSGRKVKFNMTAEQYEYFKHEHSRNIILKARQLGFTTQVCIMQLDCALFESKKCALIAHTLHDAKRLFREKVKFAYDNLPELVRLANPIKIETKEEMVFENGGSVTVSTSFRGGTLQRLHVSEFGKICAKYPDKAREIVTGAFEAVPLDGIATLESTAEGRQGYFFEYCQTAQKDQLSHKDLTAQDWRFFFFAWHQNAKYIMPVQPISERLQAYFDSLKSKYGIQLSDEQKAWYQAKERTLGDDMKREYPSLPSEAFEQSIEGAYYAKQFAYLYANSRIDKLPDNEHLPVDTYWDLGVSDSTTIWFIRQVGDEFHIVDYYENSGEGLNHYIKVLKDKGYKYAKHVAPHDIDNRQLGADRAKTLRELARDGYEIDGQIYRLNFDVVPRTSNVNEDIEKVRQILPKCAFDAIKCEQGIKALESYRKEWNDKMGVWRDKPLHDWASHGADAFRYFATYQTKQQYATQLKVSMY*	hallmark_hmm	common_virus	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0040	shell	direct	high	1472	0.999	GCA_001656475.1_00860
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	29696	30031	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	29697	30032	GCA_001656475_1_15_41	GCA_001656475_1_15_41	+	261913	.	PDB:2JES_G	Portal-protein	MNPDYMLPELLEQIPKWTMIEDCYHGQDAIAKKGEIYLPNPSPINEDEAVKVQRYIDYQKRAVFYNVTKRTANAMAGIFDDAVKGAWGAFGGLSACQTWSVSANQKGCQRR*	hallmark_hmm	common_virus	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0041	shell	ambiguous	low	97	0.289	GCA_001656475.1_00861
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	30090	31004	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	30091	31005	GCA_001656475_1_15_42	GCA_001656475_1_15_42	+	261913	.	PDB:7Z4W_L	Portal-Protein	MVNNTRKLTLLVLKENYIEQDDGFKVQTGEQLLVYRLIDKQVWCAIYQKHGTWQQIQNEPIRGVHEIPFVFFGANDNDESIDDAPLYDLAVLNLAHYRNSADYEEGNFIAGQPSLFITGLTKEWVTDIVNEGHPIRLGARTANILGSGANAFLLQSNANSGLYEAMQDKKEQMVALGARLIEPKGGIKTATQAQSDKADETSITAHLANNLSDAYSRAFNYCGQFLSIKHTPTVVFNTKFDTNKMTADERRQLIAEWQAGAITFSEMRARLVDDEIAFIEDDELAKSQIDSDLGEITGHIDDEP*	hallmark_hmm	common_virus	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0042	shell	direct	high	915	1.0	GCA_001656475.1_00861
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	31016	32755	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	31017	32756	GCA_001656475_1_15_43	GCA_001656475_1_15_43	+	261913	.	PFAM:PF06152.10	minor-capsid-protein	MKTLINLERLKTQLANDFNVTIKDILAFLQRVVFNKEIGDLSQKEVNIVIKKTDSQLKTLFGAFITNLKTDWRGLFNHRYEVDSPKNIKALQKYADEVFAKPLRLDGKMGITLDELLDAFTDTERKKITNAIRLAHHDGLPNAKLIQMIRGSRARNYQDGILAITTRHAKTIAHTGTAIVANQAKQAVIADNADIIKGIKILATLDLRTSGICRGLDGVFMPLDKARYLPYHFNCRSSFEIVYDGYTAPKQRASEHGVVENQSYYEWLKNQPAQYQDEVLGKTRGKLFRDGGLTVERFRALQLDKHFTPLTLEQMRALEPKAFDKAFAAVVKLDNTKDRVLAVKRTDWGDLPNVMIAHTKDTITTHKHYQKAKSGELSSALFLVDEYLTDDFVLKLHHTIKGYDNVRIVPVHAEEQLGRNKIPMAYALALSEMLGVDMDLGIVQAKRAYRTSSDGVGRLLKRVSFDGVVLSGHHYMIVDDVITQGGTLADLRGFIESKGGKVILASTLNGKPNSAKLPITKATLGQLRKQAGKEIEQWWQEQFGYDFSQFTESEARYLAKQIHRYGIDAIRDILFASRP*	hallmark_hmm	common_virus	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0043	shell	direct	high	1739	0.999	GCA_001656475.1_00862
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	32975	33610	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	32976	33611	GCA_001656475_1_15_44	GCA_001656475_1_15_44	+	261913	.	PFAM:PF06810.10	minor-structural-protein-	MSEKPTTVLSDDTQNQITQEQYNELQAEVERLRKHSETLLAEKKQQSEQRKAEQAEKERLAEETARKKGDFEALEKQYQAKIQELNEQITKRDAERDENLVKSHAQKLSSQLSDNPANQEILQILIEKRLSAKDGQLSVLDDSGAVSIMTLDDLAKQIQNCGKYDSLIIGTKSCGTGSNGQSAKRAGDYSEQERLALAHSNPALFNQLFLE*	hallmark_hmm	common_virus	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0044	shell	direct	high	635	0.998	GCA_001656475.1_00863
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	33613	34629	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	33614	34630	GCA_001656475_1_15_45	GCA_001656475_1_15_45	+	261913	.	PDB:6R3A_A	Major-Capsid-Protein	MAKLREIFNKNVTLSYQVKDNLQRSKFWQSGAFVSDARLRPLLNSGSLTFDVPFIHPIDGNLEANYGNTIMTDIAMPRSIEGSKSKGRLAILNEGFIESRLESYLMGQSPLKLMAQMIDDYWLAQAENRAIATLFGLLNYDQSNGKKLSTDISKATADDSSGFDVNAFIDAEGTMDEMYQGKGLMVVHPLIATKMRKQRLLERVTTADDLKPIDVYNGRRLIQSKRATVIGTGKNAKYVSYLLGAGAFAADMVAGLDDLELERTANTGNGSGHTTLWTRRNMLIHPQGFSFIAEPSTLTGGTKNEALSPSWTDLTTAANWRLDADADATPIRFLITNL*	hallmark_hmm	common_virus	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0045	shell	direct	high	1016	0.999	GCA_001656475.1_00864
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	34640	34843	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	34641	34844	GCA_001656475_1_15_46	GCA_001656475_1_15_46	+	261913	.	.	hypothetical protein	MGLPKDKVKPAFNYTYPSERAYFDESKSTLTNAQVTDPAKSGADYGIKDPQVTEALTGTKSETAKIE*	.	hypothetical_protein	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0046	shell	direct	high	203	0.995	GCA_001656475.1_00865
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	34904	35263	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	34905	35264	GCA_001656475_1_15_47	GCA_001656475_1_15_47	+	261913	.	CDD:cd08053	Head-Tail-Connector-Protein	MITLDDLTDIDKADEQTVVIVNAWLNKHKIRAFDKTPDPIRQAGRYIAKAWLDGDLFVARTEGVVTSKSSKAGDVSVSKTYADGEQGQAMSQNEQIALALIEPYLQQPLGMFGLPAVRG*	hallmark_hmm	common_virus	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0047	shell	direct	high	359	0.997	GCA_001656475.1_00866
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	35322	35558	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	35323	35559	GCA_001656475_1_15_48	GCA_001656475_1_15_48	-	261913	.	.	hypothetical protein	MQIKLSNLSERVSASYGLVKQIMGHRPTATDEKHDKDRLIDLLRYWHTIADCAIALAGDKSSKFHEILPPIIGTISTA*	.	hypothetical_protein	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0048	shell	direct	high	236	0.996	GCA_001656475.1_00867
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	35970	37070	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	35971	37071	GCA_001656475_1_15_49	GCA_001656475_1_15_49	-	261913	.	COG0842	ABC-type multidrug transport system, permease component [Defense mechanisms]. 	MRRFIKQYLTIWLDVIKDRSIFLTMVLSVVFYGFFYPFAYQAQRPADLPIVIVDEEQSPLTQAIIHTTSHTPNIHVLAVVSDFRQAQMLVQSAKADGILLLPDNLSQSIHHGQTGGVGLYLSSAYFLRTQNIGAGLASALHATIAQELGQVTQTRHKPMPELIHQSALFNPLSGYGSYIFPAVAPIIVYQTIVLGLAMLVAGYRQRLWRASACDFLAIYAVALTIGCLSCFYLFGFVFWWHDYPRGGNFWGMMLGVPIFVSCAIGVALLIASWVADGAKVGVLLIFSSVPLFMLTGLAYPLMAMPKFLQPLANALPTTQGVQMFIQLNQMGVPIQDVWQKMAYLASVAVLCLGAAFWRLRLVNKSV*	mmseqs_cdd	nonviral_gene	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0049	persistent	direct	high	1100	0.999	GCA_001656475.1_00868
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	37070	38248	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	37071	38249	GCA_001656475_1_15_50	GCA_001656475_1_15_50	-	261913	.	PF12698.7	ABC-2 family transporter protein	MIVRFIRAFCQAFLRELNRLSCNRFDLAMVMIAPLVIIVLFGAMFYHGKAHHLPVALVDEDNSELSHLIYQHIHHNETVEAVLILDDIQDAHHAINRLDVGGYIHIPKDAQNRLVRGENTGIHIAYNQSFFSIGSAISSALSKSTKGGIAKFIQTKHLTGVLPHLSGNMPHVKISVLFNPNLSYEFFLEPFLVAAVLHLLLCCLVAHAIGQEFHEYSVYEWLYHSPFGALFGKISVYVLIISLWHGLWQAWLIGVRGWFVAGSLFVLIIGQLLFYLAYALFGAMVVLKTQNINKSYGILAVYGGSSMSFAGVTLPLNNASGFTQFWSQIIPFTPFARLQVEQWVIGSPFIITLAHLNSLLIFVLIFAIGSLLLLRRIKKTLIAMPNTPKDDS*	hhsuite_tools	hypothetical_protein	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0050	persistent	direct	high	1178	0.999	GCA_001656475.1_00869
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	38276	39439	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	38277	39440	GCA_001656475_1_15_51	GCA_001656475_1_15_51	-	261913	.	COG1566	Multidrug resistance efflux pump [Defense mechanisms]. 	MTDKTDDVKPDTDGNHPKKQKPHTQAKSKPRPLALFLLLALIGSVLLVIIFGLIQSYGTKQNLPTANAVGGTNEPPKGVIAHVRQKIARSATFSIQGRVEGETVNISTKLPSRVAAIYVKEGQAVRAGEPLVQLISPEIDAKKQQAAAMLQSALAFQSSTDRGTRQENVDTLYANWQSAKAQATLAEESYRRGEYLYQEGVISRQRRDEMRAAKQSSAQIAQAAQQQYLKAERGRTDELKSSADAQVQIARAAVAEADALDAETMLYAPIDGTVSKIYIQSSELVMPAVPVMSLLDNHPTITMSVQENQYSHVHALPKLTGFIPALNKTADFKIVHTDDEGEFATIKNTRQTGGYDIHSFKTKLEPITPIEGLKVGMSVIFDITVSP*	mmseqs_cdd	nonviral_gene	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0051	persistent	direct	high	1163	0.999	GCA_001656475.1_00870
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	39486	40982	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	39487	40983	GCA_001656475_1_15_52	GCA_001656475_1_15_52	-	261913	.	5AZS_A	Outer membrane protein OprJ	MSIKCQLVAIDNIIKPCYDRILNFVYFSTMKMPYFLLLGLLLVQQADADYSLLDAQKQLMSSSPAIQASHALYQADVLQAESLQKLHYPRISLNAHAFALQQNSSIPLDNIKEQTAQHINTHFDHRFGNAPDGLLDALHDSTQTALDRLPDHQDVKLRHDGITPNITATMPIYTGGLISSSKNIANLQAQRGKFGLQERISLAKLNLIRHYFNVQLQKQLTDTQQNTLSAMQLHVDNAYKLEQQGFISRGQRMQFEVARNQVQRLYQSTQNQHQNSIYELAVLLGLPHIEPLSTPLFINTQHRPNWQALLKDSQNTPLNQKLKTDILLADENIALRQSTKKPKIAAVARYTLDDKPDWFAGVAVQYNLFSGIDRDKQIRAAHLQKQAAKSGHEQVNEHITTTMHTAYGEMVLAQKTHALLQQNHRAAKENLRIQTLSFQEGFGTVSGVVDAQSALSQIDSETALNAYRYLLALATLLHYTGAIDDFDDYLSLDDAHKL*	hhsuite_tools	hypothetical_protein	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0052	persistent	direct	high	1496	0.999	GCA_001656475.1_00871
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	41245	45417	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	41246	45418	GCA_001656475_1_15_53	GCA_001656475_1_15_53	-	261913	.	PDB:5XDR_A	Replicative-polyprotein	MHSTDNLPVLAKDRHYLNKLKQKVDSTTGDLKAKYKIRYDAIYKRSAEQVANRMDSIPKNLSEKLNHDLPVTAEADTLIQAIREHQVVIIAGETGSGKTTQLPKLAMMAGRGVTGQIGHTQPRRLAARSVAMRIAEELGETLGQTVSFKIRFTEEGGKHSIVKLMTDGILLAELGSDKFLANYDTIIIDEAHERSLNIDFIMGYLKRLLPKRPDLKVIITSATLDTQRFSDYFSVHGKPAPVYIVEGRSYPVEVRYRPLTDTIVSSQDDDAFDDIEDNLPRALTAAVNECFEDARAKGHPDQADILIFAATEAEIRELQEVLMLYAPAHTEILPLFARQSYGEQQKIFAPSGKGRRIIIATNVAETALTVPNIRYVIDLGFARISRYNYRSRIQRLPIEAISQAAANQRKGRCGRVASGVCIRLYSEEDFNSRPEFTEPEILRTNLASVILQMERLQLGDVNDFDFITPPDLRLVNDGRKLLIELGALDDKSFTKTRAKKGRTQLSSLTKIGQQMAKMPIDPRLARMLVAGDTFDCLADILIIVSALAVQDVRERPINKQAQADQKHALFRKEDSDFLFYLELFAALFDQHSTNDNQVLGSNARRNFAKKHYLSYARIREWQKTHRQLSEMMAEMGFEINKQKNHQNGVKTDTKKGTRLSLKAGTSRQKSIKQALVGAKALKNEIDHKTSIHYANIHRALLSALLSFVAHKTDTVGEYLMARSQKARIFPASTLHKKGAQWVMAFEVVETSQVYMRTLAKIEPEWIIKAAPNLLKYHYFEPHWSKKAGRVRAYAQISLFGLIVIAKELVNFEQIDLVQAREIFIRDALVANQYGMQMKFLADNANKIKDIERIEDKLRRRDLLVDEERLYQFYDAKIPNHIASRKSFEEFYHDAENKTPNFLHFSDEDVLNEAVDDNREFPESWHLGGVRLPLSYVFDPAADDDGVTVRVPIKALAQVDPVALLWGISGWRYELVLQLLKTLPKEIRRQIVPIPDTCQKIFHQLDASSKMGLLDQLVAALKTLGVQTQAQDFAPDKVEDYLRPLICVVDDKNRVIEKSRDLPKLQARHRKTSVQSIAVEQGVHHHFPNYFNFVKNKHTSGIVMQEFSALKADTAQSAVFIATFTEINAALAEHKKGVLTLIKGRLGAKQKQLTGQIDKAFKLAFAPLGDLEKLKNIVVHATLEACLYEYGQDFDHKPVSQHGDHARAAIAGLVTQNNQWLISHLPLDEREFDNCQDLILKNFLLVGQEILRSLKEIYTAWQTARGKLLMLDQEIFGENIEDIEDQLDDLQLANFVYQTDYRHWRQYPRYLQALNIRLDRLQHNLEADLDAVYLLDTHMERLARCVKNPKFAEYRWLVEEYRINLFAQPMKTAQPVSAKRLETLWANLTTQ*	common_virus_hmm	common_virus	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0053	persistent	direct	high	4172	1.0	GCA_001656475.1_00872
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	45692	46381	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	45693	46382	GCA_001656475_1_15_54	GCA_001656475_1_15_54	+	261913	.	TIGR02796	TolQ protein. TolQ is one of the essential components of the Tol-Pal system. Together with TolR, it harnesses protonmotive force to energize TolA, which spans the periplasm to reach the complex of TolB and Pal at the outer member. The tol-pal system proves to be important for maintaining outer membrane integrity. Gene pairs similar to the TolQ and TolR gene pair often number several per genome, but this model describes specificially TolQ per se, as found in tol-pal operons. A close homolog, excluded from this model, is ExbB of the ExbB/ExbD/TonB protein complex, which powers transport of siderophores and vitamin B12 across the bacterial outer membrane. The Tol-Pal system is exploited by colicin and filamentous phage DNA to enter the cell. It is also implicated in pathogenesis in several bacterial species [Transport and binding proteins, Other, Cellular processes, Pathogenesis]	MNEFISLISLVIEASIVVKLVMAILLLLSTISWVLIFHLGAKIGGVAKFDERFEQWFWTDDIDRQLSVVQAESERVGLELIFYTGFYDQNHTNQDFVLSDDKKVQMVERRLRMALGGEQVRLEKGLSTLATIGSVSPYIGLFGTVWGIMNAFIGLGQAESVGLATVAPSIAEALIATALGLFAAIPATMAYNHFTAKSNTLYENRSLFCEGLMSALVTNLAKKNTASTL*	mmseqs_cdd	nonviral_gene	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0054	persistent	direct	high	689	0.999	GCA_001656475.1_00873
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	46406	46840	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	46407	46841	GCA_001656475_1_15_55	GCA_001656475_1_15_55	+	261913	.	TIGR02801	TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]	MATSNRFARRQRLLNSDMNVVPYIDVMLVLLVIFIVTAPMLATGVEVSLPKEQTKPITQADKLPVIVSIQSDGNLYVSHKNAIDVPITPDKLDALLRQMHQDNANLQVMVNADADNAYSQIMHIMALIQNVGITQVSLLSESVQ*	mmseqs_cdd	nonviral_gene	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0055	persistent	direct	high	434	0.998	GCA_001656475.1_00874
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	46871	47665	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	46872	47666	GCA_001656475_1_15_56	GCA_001656475_1_15_56	+	261913	.	PF06519.11	TolA C-terminal	MRLSDNHPTVNFDKSVLILPILASVLLHTVIIIAVAAPLITPPTKPNTAIQTALVGQEAFNSAKTALSNHHANQNKPTAANASSTITANDNAFMQAQNQHRYRPQVSTSATTTQAYHPLPNSVPFESNSPNIQNQPTNAHAKLTKYSNNVSDLEQANHTESTPSRAQINAAISSVKHRIETIWQRYPKQPNQTITFQVNINQQGDVTSIQFGGGHPDLRESVEAAVYAAAPFYELGGMRDSIRLQFTTEQLIMDNSQTPNEPNH*	hhsuite_tools	hypothetical_protein	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0056	persistent	direct	high	794	0.999	GCA_001656475.1_00875
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	47682	48944	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	47683	48945	GCA_001656475_1_15_57	GCA_001656475_1_15_57	+	261913	.	TIGR02800	tol-pal system beta propeller repeat protein TolB. Members of this protein family are the TolB periplasmic protein of Gram-negative bacteria. TolB is part of the Tol-Pal (peptidoglycan-associated lipoprotein) multiprotein complex, comprising five envelope proteins, TolQ, TolR, TolA, TolB and Pal, which form two complexes. The TolQ, TolR and TolA inner-membrane proteins interact via their transmembrane domains. The {beta}-propeller domain of the periplasmic protein TolB is responsible for its interaction with Pal. TolB also interacts with the outer-membrane peptidoglycan-associated proteins Lpp and OmpA. TolA undergoes a conformational change in response to changes in the proton-motive force, and interacts with Pal in an energy-dependent manner. The C-terminal periplasmic domain of TolA also interacts with the N-terminal domain of TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi , Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]	MKSPITKVCLALTISFSAALTHTYADDELIVISEQVAQSRYPVAVMPFSEAHQMSHYLNLAGLGATHQNLPQHTQTNHDILNNLTAWRNRGFEYIILAQSHQILGNKLAINYEIIDTTNGSVSVKHTQISDNHPASIQAAYRQISDTIYQIITGQPSDLMGKIAYVEESGSPQNKISSLKLIDPNGQLIRTLDTVNGSIITPTFSPDGLSIAYSVQTKNNLPIIYIVPVSGGTPKLITPFWGHNLAPSFSPDGGSILFSGSHENNNPNIYRLNLHTNHLDTLTTFNGAENAPNYLADASGFIYTADKGTRRQSLYRYDFGTTHSTQIASYATNPRLSPDGSKLVYLSGGQIIIANTKGRIQQSFRVLGTDVSASFSPSGTRIIYTSNQGNKNQLMIRSLSSNTIRTVATSGTVRDPIWSK*	mmseqs_cdd	nonviral_gene	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0057	persistent	direct	high	1262	0.999	GCA_001656475.1_00876
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	49001	49213	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	49002	49214	GCA_001656475_1_15_58	GCA_001656475_1_15_58	+	261913	.	.	hypothetical protein	MVGMIIGLISLSGCQHIQATKSPIPIIIHSHTKLPSQPEPTPTDAMPTKNRPTPTTIQQPSTIFILEDWF*	.	hypothetical_protein	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0058	persistent	ambiguous	low	3	0.014	GCA_001656475.1_00877
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	49210	52767	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	49211	52768	GCA_001656475_1_15_59	GCA_001656475_1_15_59	-	261913	.	PDB:5JXR_A	Chromatin-remodeling-complex-ATPase	MMIDTLKPKLNLPTKANFKTTLPLLGGADLSFWLALAAKSEERLIVMIANHQNELNQLDTELSFFGIDAHVFPDWEILAYDQLSVHQDIISERIALLTRMPTTGVLLVSTQTLMQRIAPPSWLIGQHFDLAVGDKFDINEQRLRLTKAGYVQTENVFEPGEFAVRGSIVDIFAVGQSLPFRLDLFDDDIETIKFFDPDSQRTLSDNDLAQLKKDAQAGMNTHHAQKLPSSAKITEFRLLPAREFPLEEGKDMFRQNFASLFPNASARKIEFYNDVMAAIAPQGIEFYAPLFFELDAWMKTGNLFSYLPDDTLVVSHDNLSACHDEYYQQIQARHHSRAHDKSLPIMPPDYLFLANNEFHQALKAYPRVVINTNHDTAKIGAMESLPPPILPINHQAAEPLSELLSFIKSGQVPILLVAESAGRREIILELLKDKAAVKVVDNYQEFINNLDDFNTDCIALSVAPIERGLWLRDETGGLCIISETQIFGRQVLQTRRRRQSSVSQAFLIKSVTELTEGALVVHLEHGIGRYQGLVVLDVGEGEQEFIHLKYADDASIYVPITNLALIGRYSGSDLQTVSLSKIGSGKWEKAKLKALEQIHDVAAELLNVQARRNAKSGISFDIDMSQYELFASQFAFEETIDQAEAIHAVMHDMKQSKPMDRLICGDVGFGKTEVAMRAAFIAVQAGYQVAVLVPTTLLAGQHEDSFLNRFADWPIKIESLSRFGNKKHQDAILAGLADGTVDIVIGTHKLIQDDVKFKQLGLMIIDEEHRFGVRHKERIKAIQTNIDSLSMTATPIPRTLNMALSGMQDISIIATPPARRLAIKTFLLPKSDETVKEAILREILRGGQVYYLHNDVASIEAAADTLRELVGEARVAVAHGQMNEHELSAVMNDFYHKKFNVLVASTIIETGIDVPNANTIIIHRADKFGIAQLHQLRGRVGRSHHQAYCYLMVPSLKGLSSDAKKRLNAITRANTLGAGFMLASEDLEIRGAGEILGKEQSGNMQTIGFGLYMDMLERATNAIKQGRTPSLATPLDLVSDIDIHASALIPDEYLGDVHERLVFYKRISSLDDVNQLIDIRTEMIDRFGTLPVQTQNLFAVHRIRIRAKALGITKIDATQSTINIEFRADTPIDGLAIIKLIQSNDGYRMNGATAIRYTSQELMDTQARIDKVNELLLYFESAKTA*	common_virus_hmm	common_virus	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0059	persistent	direct	high	3555	0.999	GCA_001656475.1_00877
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	52769	53431	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	52770	53432	GCA_001656475_1_15_60	GCA_001656475_1_15_60	-	261913	.	COG0352	Thiamine monophosphate synthase [Coenzyme transport and metabolism]. 	MTLQSIDKVPKLYLLTNDDELTTLLDKLERVFDTGAVSLLQVRRKSTLKLYDLATVYREAEMIVSLANDYDIKVVMNDNLELASHFGTGLHLGQRDGSVRVAREILGDDVVIGRTCHTDIALFKEAKREGATYGAMGTAFASITKPRAKIISKDILKKACEFDFPLCVIGGITLENIHQLRDELNGTPIDYIAVTADIMGHSVDTIADKCLAWQHKLNTW*	mmseqs_cdd	nonviral_gene	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0060	persistent	direct	high	662	0.998	GCA_001656475.1_00878
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	53586	54023	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	53587	54024	GCA_001656475_1_15_61	GCA_001656475_1_15_61	-	261913	.	6AF2_D	HIT domain-containing protein	MFQLHPTLAKDTFLVGDFPLSTVRLMNDCQFPWLILVPRVSGIKEIYELSAADQIQFLRESSWVSSQMAKIFGADKMNVAALGNQVSQLHFHHIVRYQNDAAWPNPVWGHEAMPYTQEVLSHMQQTLMMALRGHHQMPFDWKMDV*	hhsuite_tools	hypothetical_protein	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0061	persistent	direct	high	437	0.998	GCA_001656475.1_00879
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	54630	54827	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	54631	54828	GCA_001656475_1_15_62	GCA_001656475_1_15_62	+	261913	.	PFAM:PF16777.4	transcriptional-regulator	MPKIVANPKTRAQIQKDSDTRRGVKQIGFKVPISFVQRLDELAKQTGKTKNIIIMEAVDLWAKQL*	phrogs_hmm	hypothetical_protein	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0062	persistent	direct	high	197	0.995	GCA_001656475.1_00880
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	54849	55109	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	54850	55110	GCA_001656475_1_15_63	GCA_001656475_1_15_63	-	261913	.	.	hypothetical protein	MDKQKQLYKDNEDALTQLAQEGVAARIAIDEAYQDAKRSSCPSKTFWTNTKASNHFCGQIRMDKPKNMSVKIMKSVRKKATFGRLF*	.	hypothetical_protein	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0063	cloud	direct	high	260	0.996	GCA_001656475.1_00881
GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote	cenote	CDS	55102	56820	GCA_001656475.1	LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475.1_LXHO01000013.1	GCA_001656475.1|LXHO01000013.1	GCA_001656475_1_15	GCA_001656475_1_15@C0	55103	56821	GCA_001656475_1_15_64	GCA_001656475_1_15_64	-	261913	.	.	hypothetical protein	MVGAVWLANVAKNSALVTSFVGLTSATLASTKTSIANAFSVQGQITAYNALSTRMMLLRLTKAHYIDLTKTAIKATAVYARSLVGLAASFDRTTLATKTATLASIGWTKTKRGAAGVGILATRAITGLGGAFMALGRIITAHPIIAIGAVLASVVVSTHGVTGAINSLSDAFGVVTLMAKDFIDFIGNGFLKAWDIVSNFANNMLAKVGDTTKGSMGAFSNFFATSHGGFVGMLQVAAKTFDLINAAAKAGAKNALHNFVQLGKTTKNVFYGIGNAFVSIIEMMINNAARKIDFLSTKANGMAKVLGIEASIPLIGTVSLGRLQYDNVDFGAVASIADNNTNSAYDYVTKLADKATQATKANASLADSYNSVGSAATNAANATKNASDKTKKATDDIGDAINELDALVSKLHHESHQLLNNSLSEMIFETDNKLGKFYGATEAQKQKLKDLAGKKDLYTATKKANDELKSLARTIKLVGKQTPFDELRNDLFDVRHEMSVLNGETKNSLLLWAANAENAKLAFELNQRSSQINHDAMLANYASSYQRELLDIEREINQELRNPPKPLGAVYG*	.	hypothetical_protein	C0	56821	0	56821	GCA_001656475.1|LXHO01000013.1@region_1_56821@tool_cenote_CDS_0064	shell	direct	high	1718	0.999	GCA_001656475.1_00882