core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_001657905.1|LXZW01000052.1@region_1_11731@tool_cenote	cenote	CDS	237	839	GCA_001657905.1	LXZW01000052.1	GCA_001657905.1|LXZW01000052.1	GCA_001657905.1_LXZW01000052.1	GCA_001657905.1|LXZW01000052.1	GCA_001657905_1_52	GCA_001657905_1_52@C0	238	840	GCA_001657905_1_52_1	GCA_001657905_1_52_1	-	11730	.	cd19930	phosphoacceptor receiver (REC) domain of DesR and similar proteins. This group is composed of Bacillus subtilis DesR, Streptococcus pneumoniae response regulator spr1814, and similar proteins, all containing an N-terminal REC domain and a C-terminal LuxR family helix-turn-helix (HTH) DNA-binding output domain. DesR is a response regulator that, together with its cognate sensor kinase DesK, comprises a two-component regulatory system that controls membrane fluidity. Phosphorylation of the REC domain of DesR is allosterically coupled to two distinct exposed surfaces of the protein, controlling noncanonical dimerization/tetramerization, cooperative activation, and DesK binding. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	MKLLVAEDQSMLRDALCQLLMLEDDVEEVHAASDGQEAIALLEKEEVDVAILDIEMPVKTGLDVLEWIRANQRETKVVIVTTFKRKGYFKRALAAQVDAYVLKERSISDLMATIHTVLAGQKEYSPELVEGVAFDNNPLSQREQEVLAMVAQGSTNQEIAESLFLSNGTVRNYMTAILTKLDAGNRTEAVRIAKEKDWLG*	mmseqs_cdd	nonviral_gene	C0	11731	0	11731	GCA_001657905.1|LXZW01000052.1@region_1_11731@tool_cenote_CDS_0001	persistent	direct	high	602	0.998	GCA_001657905.1_01706
GCA_001657905.1|LXZW01000052.1@region_1_11731@tool_cenote	cenote	CDS	836	1930	GCA_001657905.1	LXZW01000052.1	GCA_001657905.1|LXZW01000052.1	GCA_001657905.1_LXZW01000052.1	GCA_001657905.1|LXZW01000052.1	GCA_001657905_1_52	GCA_001657905_1_52@C0	837	1931	GCA_001657905_1_52_2	GCA_001657905_1_52_2	-	11730	.	COG4585	Signal transduction histidine kinase  [Signal transduction mechanisms]. 	MFRTYQKNDFAYFVSLIFLVFPVLGVFGGYFPVWTIVLTGLFTIAYLLIVYLKKAYSKWIPFLWFYTLAYIIFMSVTFQGGMMWFVFFNVNLLVWRFEDSISSYRFLSFLVTLLILTSSFFLLTDDLSTHLMSMAIPLFSLGMYYFQNRMRQERKMEEALAEQNRTINILSAENERNRIGRDLHDTLGHTFAMMSLKTELALKQMDKEQYEAARKNLEELNQISRDSMYEVREIVNKLKYRTVAEELLELERLFDLSDIVLTVDSSLDLDSLSPVSQSTLSMVLRELANNVIKHSQAESCQIRLRRDHGIILEFEDDGCGFKEVTGQELHSIRERLNLVDGDLEILSQSHPTIICVYMKEGGKA*	mmseqs_cdd	nonviral_gene	C0	11731	0	11731	GCA_001657905.1|LXZW01000052.1@region_1_11731@tool_cenote_CDS_0002	persistent	direct	high	1094	0.999	GCA_001657905.1_01707
GCA_001657905.1|LXZW01000052.1@region_1_11731@tool_cenote	cenote	CDS	1923	2660	GCA_001657905.1	LXZW01000052.1	GCA_001657905.1|LXZW01000052.1	GCA_001657905.1_LXZW01000052.1	GCA_001657905.1|LXZW01000052.1	GCA_001657905_1_52	GCA_001657905_1_52@C0	1924	2661	GCA_001657905_1_52_3	GCA_001657905_1_52_3	-	11730	.	CDD:pfam01004	envelope-glycoprotein-	MKALLKIEWIKTWRSWPVFIMSIGMPVGFFLLYSGMEMSPDPESQKAFVLSYMLTMTGFSMSSFGFFTFPYMLREDQTEHWLTYIEHSKISIQSYYLSKIFRVLMNFMVAILVTFCVGAFVRDVEMPLSHWFGSGALLLLSSLVFLSFGLLLAQIKSQQIMAIVGNIVFLGLAIIGGSWMPVTMFPKWVQHISEWTPIYHINQLVVNFAKKGEFSWKSLIFILVYATIATGLALFIKSYRESDHV*	hallmark_hmm	common_virus	C0	11731	0	11731	GCA_001657905.1|LXZW01000052.1@region_1_11731@tool_cenote_CDS_0003	persistent	direct	high	737	0.999	GCA_001657905.1_01708
GCA_001657905.1|LXZW01000052.1@region_1_11731@tool_cenote	cenote	CDS	2657	3538	GCA_001657905.1	LXZW01000052.1	GCA_001657905.1|LXZW01000052.1	GCA_001657905.1_LXZW01000052.1	GCA_001657905.1|LXZW01000052.1	GCA_001657905_1_52	GCA_001657905_1_52@C0	2658	3539	GCA_001657905_1_52_4	GCA_001657905_1_52_4	-	11730	.	COG1131	ABC-type multidrug transport system, ATPase component [Defense mechanisms]. 	MSEAILQVTNLVKKIKGKTILDHISFEVGKGDCLALIGPNGAGKTTLMSCILGDKKASSGQVFIKGKKGKAQDQIAVLLQENTIPSQLKVKELITFFQDISENGLSKVEIQALLQFKDDQYQQFANKLSGGQKRLLAFVLCLIGKPDILFLDEPTAGMDTTTRQRFWEIINDLKKSGVTILYSSHYIEEVEHTADRILVLHQGRLIRDTTPHAMRSEEKEKQVTLPSRFVPSLDKLAAIYDVTEKRDVVTFMTKDIESVWSSLQAHGCRISDIEIQNKTLLDSLFDSTREDKS*	mmseqs_cdd	nonviral_gene	C0	11731	0	11731	GCA_001657905.1|LXZW01000052.1@region_1_11731@tool_cenote_CDS_0004	persistent	direct	high	881	0.999	GCA_001657905.1_01709
GCA_001657905.1|LXZW01000052.1@region_1_11731@tool_cenote	cenote	CDS	3531	3710	GCA_001657905.1	LXZW01000052.1	GCA_001657905.1|LXZW01000052.1	GCA_001657905.1_LXZW01000052.1	GCA_001657905.1|LXZW01000052.1	GCA_001657905_1_52	GCA_001657905_1_52@C0	3532	3711	GCA_001657905_1_52_5	GCA_001657905_1_52_5	-	11730	.	.	hypothetical protein	MKLLKILSIMLLAAIWTILFAYVLLHGSSDILYSVMGVSVAGCYVFLAFYQKKGNHKHE*	.	hypothetical_protein	C0	11731	0	11731	GCA_001657905.1|LXZW01000052.1@region_1_11731@tool_cenote_CDS_0005	persistent	direct	high	179	0.994	GCA_001657905.1_01710
GCA_001657905.1|LXZW01000052.1@region_1_11731@tool_cenote	cenote	CDS	3721	3930	GCA_001657905.1	LXZW01000052.1	GCA_001657905.1|LXZW01000052.1	GCA_001657905.1_LXZW01000052.1	GCA_001657905.1|LXZW01000052.1	GCA_001657905_1_52	GCA_001657905_1_52@C0	3722	3931	GCA_001657905_1_52_6	GCA_001657905_1_52_6	-	11730	.	.	hypothetical protein	MKIKTSYLIYAVIGTVFAGLSMFTDIFERGNFEVIFSNLGMIIGLSISAYILITMAKSFIDLVIKELKN*	.	hypothetical_protein	C0	11731	0	11731	GCA_001657905.1|LXZW01000052.1@region_1_11731@tool_cenote_CDS_0006	persistent	direct	high	209	0.995	GCA_001657905.1_01711
GCA_001657905.1|LXZW01000052.1@region_1_11731@tool_cenote	cenote	CDS	4084	5022	GCA_001657905.1	LXZW01000052.1	GCA_001657905.1|LXZW01000052.1	GCA_001657905.1_LXZW01000052.1	GCA_001657905.1|LXZW01000052.1	GCA_001657905_1_52	GCA_001657905_1_52@C0	4085	5023	GCA_001657905_1_52_7	GCA_001657905_1_52_7	-	11730	.	COG0385	Predicted Na+-dependent transporter [General function prediction only]. 	MDSLVSFSKWLSKWFTVAVILWAAFNYALPATSSWVIPNTAYLLGLILFGMGLTLTTEDFKRIAKRPIPVVLGTVAHYVIMPGLAWLLCMIFHLKGATAAGVILVGSCPSGTSSSVMAFLSGGDVALDVSIETLSTLLAPLMIPTLLSFLAGQYVSVPAQSLFLSTLRIVVVPIILGVLVHSIFGKKIDAIIKIMPLISQAAILLIVGAVVSANHANIFTAATALVIPVVMLHNLCGYALGFGFSKILGLEEPQQKAITFEVGMQDSSLGATLAMKYFVPQAAIPSTIFSIWHNISGSILSSWWKNHSKNSH*	mmseqs_cdd	nonviral_gene	C0	11731	0	11731	GCA_001657905.1|LXZW01000052.1@region_1_11731@tool_cenote_CDS_0007	persistent	direct	high	938	0.999	GCA_001657905.1_01712
GCA_001657905.1|LXZW01000052.1@region_1_11731@tool_cenote	cenote	CDS	5165	5614	GCA_001657905.1	LXZW01000052.1	GCA_001657905.1|LXZW01000052.1	GCA_001657905.1_LXZW01000052.1	GCA_001657905.1|LXZW01000052.1	GCA_001657905_1_52	GCA_001657905_1_52@C0	5166	5615	GCA_001657905_1_52_8	GCA_001657905_1_52_8	-	11730	.	COG0295	Cytidine deaminase [Nucleotide transport and metabolism]. 	MDIWQKMYEQAQALYQPQEVSDFVYARHVVAAVEAEDGQIFTGFCMEGTCGVFHLCAERAALFNMYQETGQTKVKRIIAFRDQPPHGGPSGMPCGACREFLMELHPDNRNLEFMVDYETRQTITLGELLPLWWGEERAQQFEEKSKDKV*	mmseqs_cdd	nonviral_gene	C0	11731	0	11731	GCA_001657905.1|LXZW01000052.1@region_1_11731@tool_cenote_CDS_0008	persistent	direct	high	449	0.998	GCA_001657905.1_01713
GCA_001657905.1|LXZW01000052.1@region_1_11731@tool_cenote	cenote	CDS	5625	6362	GCA_001657905.1	LXZW01000052.1	GCA_001657905.1|LXZW01000052.1	GCA_001657905.1_LXZW01000052.1	GCA_001657905.1|LXZW01000052.1	GCA_001657905_1_52	GCA_001657905_1_52@C0	5626	6363	GCA_001657905_1_52_9	GCA_001657905_1_52_9	-	11730	.	CDD:pfam01004	envelope-glycoprotein-	MKALLKIEWIKTWRSWPVFIMGIGMPVGFFLLFSSIVSTPNPEAQKDFLLSYMLTMTGFSMSSFGLFTFPYMLQEDQTERWLTYIEHSKISIGAYYLSKIFRVLLNFIVAIIVIFCVGAFVRDVELPLSGWLGSGALLLLSSLVFLAFGLLIAQIKSQQIMSVVANITYLGLAIVGGSWMPISMFPKWVQSISEWTPVYHVNELVVNFAINGEFSWKSLLFILAYTVVATGLALFIKSQRESDRG*	hallmark_hmm	common_virus	C0	11731	0	11731	GCA_001657905.1|LXZW01000052.1@region_1_11731@tool_cenote_CDS_0009	persistent	direct	high	737	0.999	GCA_001657905.1_01714
GCA_001657905.1|LXZW01000052.1@region_1_11731@tool_cenote	cenote	CDS	6375	6869	GCA_001657905.1	LXZW01000052.1	GCA_001657905.1|LXZW01000052.1	GCA_001657905.1_LXZW01000052.1	GCA_001657905.1|LXZW01000052.1	GCA_001657905_1_52	GCA_001657905_1_52@C0	6376	6870	GCA_001657905_1_52_10	GCA_001657905_1_52_10	-	11730	.	COG0727	Fe-S-cluster containining protein [General function prediction only]. 	MSQTIDVKRYEELARQKQGEHRKFLAQLKKKAPKNLDKIVQEVHNEVFQEIDCTQCANCCKTLGPDFTEQDITRIAKHFRMKLPAFEEMYLQVDEDGDKVFKSMPCPFLGPDNLCDIYDVRPKACAAFPHTNRKKIYQINHLTIKNTLFCPAAYLFVEKLKGRI*	mmseqs_cdd	nonviral_gene	C0	11731	0	11731	GCA_001657905.1|LXZW01000052.1@region_1_11731@tool_cenote_CDS_0010	persistent	direct	high	494	0.998	GCA_001657905.1_01715
GCA_001657905.1|LXZW01000052.1@region_1_11731@tool_cenote	cenote	CDS	6954	8954	GCA_001657905.1	LXZW01000052.1	GCA_001657905.1|LXZW01000052.1	GCA_001657905.1_LXZW01000052.1	GCA_001657905.1|LXZW01000052.1	GCA_001657905_1_52	GCA_001657905_1_52@C0	6955	8955	GCA_001657905_1_52_11	GCA_001657905_1_52_11	-	11730	.	5XU1_M	ABC transporter ATP-binding protein, ABC	MFRLTNRLALSNLIKNRKLYYPYTLATILVIAITYIFTSLMLNSHLDNLPGADSIKMVLGLGLVIVALSSGIIVLYANSFVMKNRSKELGLYSVLGLEKRHLFSMILKETMIMGVVTLLLGIGVGALFDKLIYAFLQRILGESTGLVSTFQVMTIPIVLVIFACIFSLLVLVNGFRLLRLNPLQLTKDGLKGEKKGRFLVIQTLLGLGAMGCGYYLALSVKNPVTAIISFFLAVLLVILGTYLLFNAGTTVVLQLLKKKKSYYYKPNNMISISNLVFRMKKNAVGLATIAILSSMVLVTLVGAASIYAGKKDYLASSAPHDYSVIGTNVDVTSTQKVMDDFLSQSGNQVNKKTEATYLYFGIKEQEKNKLTIFSKNERKVVPKSIFLVFSQDTYKQLTGKDLNLTSNQVGLFTKNKTLKDQKSVSINGQNYQIKNGLNDFIKGKVPNNFTIISSNYSYLVVPDTDDFKESIKGTATTQTTYIGVNVKDPAHDAKKNSDLLDKLADEEMQQLAGQTTAAPWFSLVSNSRYAVEGGLNGFVSGTLFIGIFLSIIFMIGTVLVIYYKQISEGYEDRERFVILQKIGLDDQQVKKTIRKQVLTVFFLPLIFAFTHLAFAYHMISLIVRLIGVLNPDLMLVVTIIVCGVFFLAYVLVFALTSRSYRRIVSM*	hhsuite_tools	hypothetical_protein	C0	11731	0	11731	GCA_001657905.1|LXZW01000052.1@region_1_11731@tool_cenote_CDS_0011	persistent	direct	high	2000	1.0	GCA_001657905.1_01716
GCA_001657905.1|LXZW01000052.1@region_1_11731@tool_cenote	cenote	CDS	8956	9714	GCA_001657905.1	LXZW01000052.1	GCA_001657905.1|LXZW01000052.1	GCA_001657905.1_LXZW01000052.1	GCA_001657905.1|LXZW01000052.1	GCA_001657905_1_52	GCA_001657905_1_52@C0	8957	9715	GCA_001657905_1_52_12	GCA_001657905_1_52_12	-	11730	.	COG1136	ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]. 	MTLLDVQHVKKIYKTRFKGNQVEALKDIHFTVEKGEYVAIMGESGSGKSTLLNILAMLDKPTAGRVYLNGMDTATIKNKDASSFRREKLGFVFQDFNLLDTLSVKDNILLPLVLSRRPLKQMMTQVEAVSRQLGIHPLLEKYPYEISGGQKQRVAVARAIITKPEILLADEPTGALDSKSSAALLDVFDTINTSGQTILMVTHSTSAASRAQRVLFIKDGILYNQIFKGDKSEHQMFQEISDTLTTMASEVN*	mmseqs_cdd	nonviral_gene	C0	11731	0	11731	GCA_001657905.1|LXZW01000052.1@region_1_11731@tool_cenote_CDS_0012	persistent	direct	high	758	0.999	GCA_001657905.1_01717
GCA_001657905.1|LXZW01000052.1@region_1_11731@tool_cenote	cenote	CDS	9859	10833	GCA_001657905.1	LXZW01000052.1	GCA_001657905.1|LXZW01000052.1	GCA_001657905.1_LXZW01000052.1	GCA_001657905.1|LXZW01000052.1	GCA_001657905_1_52	GCA_001657905_1_52@C0	9860	10834	GCA_001657905_1_52_13	GCA_001657905_1_52_13	-	11730	.	cd16948	Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Bacillus subtilis BceS, YxdK, and Bacillus thuringiensis YvcQ. This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs) such as Bacillus subtilis BceS and Bacillus thuringiensis YvcQ, the HKs of the two-component regulatory system (TCSs) BceS-BceR and YvcQ-YvcP, repsectively, which are both involved in regulating bacitracin resistance. It also includes the HATPase domain of YxdK, the HK of YxdK-YxdJ TCS involved in sensing antimicrobial compounds.	MMGKRQFIKYHIRSRLPFYLLVIFNEIILLLFAFLFEEVADVLYYSLAILTFVTIIMLAWDLFRSYRSYKLAYLYEEITPLSPLEFYLAQILENARKNQMNQTEEERKRYTDLMDYYTLWVHQIKTPIAASQLLVQDVADRNTRSLLEREIFKIDAYVHLVLQYLRLENFHDDLQLKQVALEQLVKEVVRKYSLFFIQKGLTINLDDLDVKVISDEKWLLVIIEQVLSNSLKYTKSGGIEIYFKDNTLYLKDSGIGIKDSDILRVFERGFSGYNGRLTQQSSGLGLYLSKKIADQLGHEISISSQVGQGTTVSIHFQKKKLAID*	mmseqs_cdd	nonviral_gene	C0	11731	0	11731	GCA_001657905.1|LXZW01000052.1@region_1_11731@tool_cenote_CDS_0013	persistent	direct	high	974	0.999	GCA_001657905.1_01718
GCA_001657905.1|LXZW01000052.1@region_1_11731@tool_cenote	cenote	CDS	10823	11503	GCA_001657905.1	LXZW01000052.1	GCA_001657905.1|LXZW01000052.1	GCA_001657905.1_LXZW01000052.1	GCA_001657905.1|LXZW01000052.1	GCA_001657905_1_52	GCA_001657905_1_52@C0	10824	11504	GCA_001657905_1_52_14	GCA_001657905_1_52_14	-	11730	.	cd18159	phosphoacceptor receiver (REC) domain of Streptococcus agalactiae NsrR-like OmpR family response regulators. Streptococcus agalactiae NsrR is a lantibiotic resistance-associated response regulator and is part of the nisin resistance operon. It is a member of the NsrRK two-component system (TCS) that is involved in the regulation of lantibiotic resistance genes such as a membrane-associated lipoprotein of LanI, and the nsr gene cluster which encodes for the resistance protein NSR and the ABC transporter NsrFP, both conferring resistance against nisin. This subfamily also includes Staphylococcus epidermidis GraR, part of the GraR/GraS TCS involved in resistance against cationic antimicrobial peptides, and Bacillus subtilis BceR, part of the BceS/BceR TCS involved in the regulation of bacitracin resistance. Members of this subfamily belong to the OmpR family of DNA-binding response regulators, which contain N-terminal receiver (REC) and C-terminal DNA-binding winged helix-turn-helix effector domains. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	MHKILLVEDDEVIRQQVKKILEQWGYEVVLVEDFMEVLSIFVKEEPQLVLMDIGLPLFNGYHWCQEIRKVSKVPIMFLSSRDQAMDIVMAINMGGDDFVTKPFDQNVLLAKIQGLLRRSYEFGKDQSLLEYRGVILNLKAMDLVYQGEVVSLTKNEFQILQVLFERSGNIVSREDLMKELWNSDFFIDDNTLSVNVARLRKKLEAVGLNDFIETKKGVGYGLRHDG*	mmseqs_cdd	nonviral_gene	C0	11731	0	11731	GCA_001657905.1|LXZW01000052.1@region_1_11731@tool_cenote_CDS_0014	persistent	direct	high	680	0.999	GCA_001657905.1_01719