core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_001679125.1|LZDM01000023.1@region_565076_573800@tool_cenote	cenote	CDS	565075	565929	GCA_001679125.1	LZDM01000023.1	GCA_001679125.1|LZDM01000023.1	GCA_001679125.1_LZDM01000023.1	GCA_001679125.1|LZDM01000023.1	GCA_001679125_1_19	GCA_001679125_1_19@C41	1	855	GCA_001679125_1_19_496	GCA_001679125_1_19_496	+	573799	.	cd07572	Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 10.	MPKIANIQLNSQDNIDNNLIIIQKSIHTAKHGGADLAVLPENACIMGPQGQLANRFHEMVDFYARLAHDTNMYILAGTLPCLTRPDGTPTDDRFRQSSLLFDNQGTLIARYDKIHLFRASVADGVGNYDEGRTFEAGDTPMVVSCVIAGVTIGVGMMICFDVRFSALCQKLRNMGADIITAPSAFTHTTGKAHWQSLLTARALDSQCLIIGSAQGGRHHFTHKDKQHTRQTWGHGMMVDANGQIISSTNKTDGGDFMITYADFDKDEQDDVRKNMPIFKCQVDL*	mmseqs_cdd	nonviral_gene	C41	8725	565075	573800	GCA_001679125.1|LZDM01000023.1@region_565076_573800@tool_cenote_CDS_0001	persistent	direct	high	854	0.999	GCA_001679125.1_01566
GCA_001679125.1|LZDM01000023.1@region_565076_573800@tool_cenote	cenote	CDS	565930	567051	GCA_001679125.1	LZDM01000023.1	GCA_001679125.1|LZDM01000023.1	GCA_001679125.1_LZDM01000023.1	GCA_001679125.1|LZDM01000023.1	GCA_001679125_1_19	GCA_001679125_1_19@C41	856	1977	GCA_001679125_1_19_497	GCA_001679125_1_19_497	-	573799	.	PDB:1A0P_A	Recombinase-XerD	MRLSAILNQSAHTLKLSPSDALPAQSNQTGQTHDVSGDKMPLSRMISHSISGDMSLVIERWLSSLMRQNYSSHTLSAYQASVCRFGGFLGHHGLNWQACSTKDLERYVVTRLEQDGVQTTSIKRDISAIKCLYQFAIKEQEQKADDKTKIHNPTIGYRLKSAPRPLPVVLDVDLMKQLLEQASPDDPKQADLWVRDKAMFELMYSSGLRLAELASLDMADVDLSAKLVRVLGKGKKMRIVPIGAKAVQAINAYLPYRTMWQAKKVANKTTKPGNTITALFISEQYGKRLGKRAIQLRLSLCATRAGIAQNLHPHLLRHSFASHLLSSGGDLRAVQELLGHSNLSTTQIYTHVDFGSLTKVYDKAHPRAFASKS*	common_virus_hmm	common_virus	C41	8725	565075	573800	GCA_001679125.1|LZDM01000023.1@region_565076_573800@tool_cenote_CDS_0002	persistent	direct	high	1121	0.999	GCA_001679125.1_01567
GCA_001679125.1|LZDM01000023.1@region_565076_573800@tool_cenote	cenote	CDS	567126	567305	GCA_001679125.1	LZDM01000023.1	GCA_001679125.1|LZDM01000023.1	GCA_001679125.1_LZDM01000023.1	GCA_001679125.1|LZDM01000023.1	GCA_001679125_1_19	GCA_001679125_1_19@C41	2052	2231	GCA_001679125_1_19_498	GCA_001679125_1_19_498	-	573799	.	.	hypothetical protein	MENGKWKMENGKWKMENGKWKMENGKWKMENGKWKMENIFNIIQNHLVIVSKYVKMINV*	.	hypothetical_protein	C41	8725	565075	573800	GCA_001679125.1|LZDM01000023.1@region_565076_573800@tool_cenote_CDS_0003	cloud	direct	high	179	0.994	GCA_001679125.1_01568
GCA_001679125.1|LZDM01000023.1@region_565076_573800@tool_cenote	cenote	CDS	567499	569445	GCA_001679125.1	LZDM01000023.1	GCA_001679125.1|LZDM01000023.1	GCA_001679125.1_LZDM01000023.1	GCA_001679125.1|LZDM01000023.1	GCA_001679125_1_19	GCA_001679125_1_19@C41	2425	4371	GCA_001679125_1_19_499	GCA_001679125_1_19_499	+	573799	.	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis]. 	MDIVQYLHGLVSSSMGISNQDTSADLLKQYYALSAAHLIELDDNFDSTHVKNHNLVALWGIQAEPLAKRLARSFHMDEQTTMTLLRAITPPMMVEVANLAGGDGLIAFLAQNFESSRTHLPAWSSQFIQSSLTQKIEQLNTQMPTADGASGNFDSPAHPANDNDSNTPPSDDQQDHHLNHDDINQNNVHHSIYNSIYNNTNNDTTANINNDLINHKPIKPNIARSNPLLIILGVTLITLAVGGVAWHLLKNKSKTVVIDDPNIATHIATPTVKSLNSPRLSLTSGENGTLYACQAEIGNAQLKEQLLNVLQNNFGQIGCIMDIDDNFGTSMTGLERLESIMAMIKSEPFTSIEIVGNHIYVNTPKMDILPRIINDIALLAPQFEVSPAPALDRKSAISQSFERATAALNHLDDPPDSYDLSRSANLGIIDFNGRDELPTNSHEMLSLLAEKIKTNPHIKLIIVTHTSGKDGSDRMANLNLSQRQAEAVKDFLVGQGVNDAQLTPKGVGDSFPVSDNVTELGRFKNERTEFLVYDETTLSALNVDIAQLLPESNAIMMPPTTYMPDQNMPIQGMPDGNYLPQPVQNAQPVIIGNHPTQYQAPTPSDHIGTNMPLTPSPDTIPNLPDDFFRLSDSTIGSEQGPGIQRELR*	mmseqs_cdd	nonviral_gene	C41	8725	565075	573800	GCA_001679125.1|LZDM01000023.1@region_565076_573800@tool_cenote_CDS_0004	persistent	direct	high	1946	0.999	GCA_001679125.1_01569
GCA_001679125.1|LZDM01000023.1@region_565076_573800@tool_cenote	cenote	CDS	569839	570636	GCA_001679125.1	LZDM01000023.1	GCA_001679125.1|LZDM01000023.1	GCA_001679125.1_LZDM01000023.1	GCA_001679125.1|LZDM01000023.1	GCA_001679125_1_19	GCA_001679125_1_19@C41	4765	5562	GCA_001679125_1_19_500	GCA_001679125_1_19_500	+	573799	.	pfam00497	Bacterial extracellular solute-binding proteins, family 3. 	MKHTVFFNQGVMIGIICIIGLLSACGKKQSTTQNTDDTNISTKTIQVAVNSNMPPFAYIDDKGNPIGFDVEVITHIAQKNGYTVKFNILPWQDMFKSVEQNISDLAISSISYTTEREGKYLLSNPYVYMPAGVLSLNDTTINSMSDLKPMRLGVQDGAIFVDVAKEHGIEHVITKEKMFLSFQDLINGKVDAIMSDKQIVQHFAKSYPQYKTNLLEYGNVNDKGSYAVAIAPKNKTQIINMFNQGLSDMRATGELTKLEEKWFEK*	mmseqs_cdd	nonviral_gene	C41	8725	565075	573800	GCA_001679125.1|LZDM01000023.1@region_565076_573800@tool_cenote_CDS_0005	persistent	direct	high	797	0.999	GCA_001679125.1_01570
GCA_001679125.1|LZDM01000023.1@region_565076_573800@tool_cenote	cenote	CDS	570670	570837	GCA_001679125.1	LZDM01000023.1	GCA_001679125.1|LZDM01000023.1	GCA_001679125.1_LZDM01000023.1	GCA_001679125.1|LZDM01000023.1	GCA_001679125_1_19	GCA_001679125_1_19@C41	5596	5763	GCA_001679125_1_19_501	GCA_001679125_1_19_501	+	573799	.	.	hypothetical protein	MLDLMSGFCYNLTIGDVLASTLVMKPNDARQERMSLVNQRTFKIVANDETYALVA*	.	hypothetical_protein	C41	8725	565075	573800	GCA_001679125.1|LZDM01000023.1@region_565076_573800@tool_cenote_CDS_0006	.	unmatched_CDS	none	0	0	.
GCA_001679125.1|LZDM01000023.1@region_565076_573800@tool_cenote	cenote	CDS	571196	571636	GCA_001679125.1	LZDM01000023.1	GCA_001679125.1|LZDM01000023.1	GCA_001679125.1_LZDM01000023.1	GCA_001679125.1|LZDM01000023.1	GCA_001679125_1_19	GCA_001679125_1_19@C41	6122	6562	GCA_001679125_1_19_502	GCA_001679125_1_19_502	+	573799	.	PDB:2CMP_A	Small-Terminase	MNIKCFYTHNHTQPHTRYTPNTHRQQDNNKIKGLKPTEKCYSPSAGNGLSIDVRSQPTNTVPDAPNTPKYETPLEFLTAVFNNANGLYTPKERINAAIALLPYTEQKLAQTGKKEDALDNAKNKSENGRFATLSNQADMFGSELLQ*	hallmark_hmm	common_virus	C41	8725	565075	573800	GCA_001679125.1|LZDM01000023.1@region_565076_573800@tool_cenote_CDS_0007	persistent	direct	high	441	1.0	GCA_001679125.1_01572
GCA_001679125.1|LZDM01000023.1@region_565076_573800@tool_cenote	cenote	CDS	571768	572199	GCA_001679125.1	LZDM01000023.1	GCA_001679125.1|LZDM01000023.1	GCA_001679125.1_LZDM01000023.1	GCA_001679125.1|LZDM01000023.1	GCA_001679125_1_19	GCA_001679125_1_19@C41	6694	7125	GCA_001679125_1_19_503	GCA_001679125_1_19_503	+	573799	.	.	hypothetical protein	MSDLSKEQAYVKIIQELYGSSIHVDEYMISDEVISMVHTILNEIRKCNKNSAVFTATFNALADALETTWKNFGIADPKQFLEDFFAEDKNIFNKQYAAFGAEFMTSFVKQWFWVLTNQRQARICVVIAARNYKSALALSLLGL*	.	hypothetical_protein	C41	8725	565075	573800	GCA_001679125.1|LZDM01000023.1@region_565076_573800@tool_cenote_CDS_0008	cloud	direct	high	431	0.998	GCA_001679125.1_01573
GCA_001679125.1|LZDM01000023.1@region_565076_573800@tool_cenote	cenote	CDS	572248	572535	GCA_001679125.1	LZDM01000023.1	GCA_001679125.1|LZDM01000023.1	GCA_001679125.1_LZDM01000023.1	GCA_001679125.1|LZDM01000023.1	GCA_001679125_1_19	GCA_001679125_1_19@C41	7174	7461	GCA_001679125_1_19_504	GCA_001679125_1_19_504	+	573799	.	.	hypothetical protein	MIKDIIDWTFSGVWLKFALALIAIFVFVLFFGVPDYNPQKTAQACKGINVPNKVMEIYKEEFCLCMGKDKQFHTQTNEQICLSRIEKIKEKSLIN*	.	hypothetical_protein	C41	8725	565075	573800	GCA_001679125.1|LZDM01000023.1@region_565076_573800@tool_cenote_CDS_0009	cloud	direct	high	287	0.997	GCA_001679125.1_01574
GCA_001679125.1|LZDM01000023.1@region_565076_573800@tool_cenote	cenote	CDS	572701	573009	GCA_001679125.1	LZDM01000023.1	GCA_001679125.1|LZDM01000023.1	GCA_001679125.1_LZDM01000023.1	GCA_001679125.1|LZDM01000023.1	GCA_001679125_1_19	GCA_001679125_1_19@C41	7627	7935	GCA_001679125_1_19_505	GCA_001679125_1_19_505	+	573799	.	PFAM:PF03354.14	Large-Terminase	MTAQINKTTWTTALPDWQERIVKGESLIPCKPLFTTMSEIALRVFKELVLVDVIGCPKIGAVSKAWVFDFVAIIFGAYDPAAKKRLIKEFFLLISKKTQNPP*	hallmark_hmm	common_virus	C41	8725	565075	573800	GCA_001679125.1|LZDM01000023.1@region_565076_573800@tool_cenote_CDS_0010	persistent	direct	high	308	0.997	GCA_001679125.1_01575
GCA_001679125.1|LZDM01000023.1@region_565076_573800@tool_cenote	cenote	CDS	573021	573587	GCA_001679125.1	LZDM01000023.1	GCA_001679125.1|LZDM01000023.1	GCA_001679125.1_LZDM01000023.1	GCA_001679125.1|LZDM01000023.1	GCA_001679125_1_19	GCA_001679125_1_19@C41	7947	8513	GCA_001679125_1_19_506	GCA_001679125_1_19_506	+	573799	.	PFAM:PF03354.15	Large-Terminase	MLTALILNERQSCELVIVAPTKEVANNSFSPMQDMIRVDSELSALFNVSAHTKTITHRFTGASLKVIAAESNSLAGVKGAYVLVDELWVFGKRSGAAAMLQEAIGGLASRPEGFVIYLSTMSDEAPAGIFKEKLDYARSVRDGQIDDLRFLSVIYEFPQAYIDSGDYVKPDNWYITNPNWGQVWTWII*	hallmark_hmm	common_virus	C41	8725	565075	573800	GCA_001679125.1|LZDM01000023.1@region_565076_573800@tool_cenote_CDS_0011	persistent	direct	high	566	0.998	GCA_001679125.1_01576
GCA_001679125.1|LZDM01000023.1@region_565076_573800@tool_cenote	cenote	CDS	573575	573796	GCA_001679125.1	LZDM01000023.1	GCA_001679125.1|LZDM01000023.1	GCA_001679125.1_LZDM01000023.1	GCA_001679125.1|LZDM01000023.1	GCA_001679125_1_19	GCA_001679125_1_19@C41	8501	8722	GCA_001679125_1_19_507	GCA_001679125_1_19_507	+	573799	.	PFAM:PF03354.15	Large-Terminase	MDYLTDTLKRAKESHDKNTLQTALAKHLNVEIGISLRANRWAGAEFWEKAGRAFSLDELIEKSEVITMGGVGV*	hallmark_hmm	common_virus	C41	8725	565075	573800	GCA_001679125.1|LZDM01000023.1@region_565076_573800@tool_cenote_CDS_0012	persistent	direct	high	221	0.995	GCA_001679125.1_01577
GCA_001679125.1|LZDM01000045.1@region_1_12093@tool_cenote	cenote	CDS	2	397	GCA_001679125.1	LZDM01000045.1	GCA_001679125.1|LZDM01000045.1	GCA_001679125.1_LZDM01000045.1	GCA_001679125.1|LZDM01000045.1	GCA_001679125_1_36	GCA_001679125_1_36@C0	3	398	GCA_001679125_1_36_1	GCA_001679125_1_36_1	+	186504	.	PDB:5U30_A	endonuclease	KTKPSRLYYKIFNIRKDFLHKLTTDLVKQFDAICLENLNTKGMVRNRKLSRAISDLGFYEFKRQLIYKANQWGKSIKELDRFYPSSKTCHCCNHKVDELPLNIRNWQCPSCNTMHDRDINASVNILILTTI*	common_virus_hmm	common_virus	C0	12093	0	12093	GCA_001679125.1|LZDM01000045.1@region_1_12093@tool_cenote_CDS_0001	.	unmatched_CDS	none	0	0	.
GCA_001679125.1|LZDM01000045.1@region_1_12093@tool_cenote	cenote	CDS	536	2008	GCA_001679125.1	LZDM01000045.1	GCA_001679125.1|LZDM01000045.1	GCA_001679125.1_LZDM01000045.1	GCA_001679125.1|LZDM01000045.1	GCA_001679125_1_36	GCA_001679125_1_36@C0	537	2009	GCA_001679125_1_36_2	GCA_001679125_1_36_2	+	186504	.	PDB:2O0J_A	Large-Terminase	MFDKLADPLYRLNNLYYITDKTGKKVKFKMAAEQYDYFEHEHSRNIILKARQLGFTTQVCIMQLDCALFESKKCALIAHTLHDAKRLFREKVKFAYDNLPKLVRLANPVKIETKEELVFENGGSITVSTSFRGGTLQRLHVSEFGKICAKYPDKAREIVTGAFEAVSLDGIVTLESTAEGRQGYFYEFSQIAEKLYLSKKTLTAQDWRFFFFAWWQNKEYAMTTEPISERLQTYFDSLKAKYDISLSDEQKAWYQAKERTLGDDMKREYPSLPSEAFEQSIEGAYYAKQFAYLYANGRIDKLPDNEHLPVDTYWDLGVSDSTTIWFIRQVGDEFHIVDYYENSGEGLNHYIKVLKDKGYKYAKHVAPHDIDNRQLGADRAKTLRELARDGYEIDGQIYRLNFDVVPRTSNVNEDIEKVRQILPKCAFDAIKCEQGIKALESYRKEWNDKMGVWRDKPLHDWASHGADAFRYFATYQTKQQYATQLKVSMF*	hallmark_hmm	common_virus	C0	12093	0	12093	GCA_001679125.1|LZDM01000045.1@region_1_12093@tool_cenote_CDS_0002	cloud	direct	high	1472	0.999	GCA_001679125.1_01801
GCA_001679125.1|LZDM01000045.1@region_1_12093@tool_cenote	cenote	CDS	2009	3439	GCA_001679125.1	LZDM01000045.1	GCA_001679125.1|LZDM01000045.1	GCA_001679125.1_LZDM01000045.1	GCA_001679125.1|LZDM01000045.1	GCA_001679125_1_36	GCA_001679125_1_36@C0	2010	3440	GCA_001679125_1_36_3	GCA_001679125_1_36_3	+	186504	.	PDB:7Z4W_L	Portal-Protein	MNPDYILPELLEQIPKWTMIEDCYHGQDTIVKKGEIYLPNPSPINEDEAVKKQRYIDYQKRAVFYNVTKRTANAMAGMVFAKYPTLDIPPELERIKTNVDGGSLSLVGQARQAFLMMLLKGRGGLLADYPYVPSDEYKPTKAQVKKYNYVPKIRLFEPKHIINWRVEPINNANKLTLLVLKESYIKSDDGFKAEYGEQLIVYRWIDGVVHHSLYQKDGVWREVQTGVLSVADIPFTFFGSNDNDETMDDAPLYDLAVLNLAHYRNSADYEEGNFIAGQPSLFITGLTKEWVTDIVNQGNPIRLGARTANILGSGANAFLLQASANSGLYQALQDKKDQMVALGTRLIEPKGGIKTATQAQSEKTDETSITAHLANNLSDAYSRVLDYCADFLGVNHECTMALNTKFDSTKMTPQERQQLIAEWQAGAITWGEMRARMVDDEIAFIEDDELAKAEIESDLGYEETNQFRTPQSQIGE*	hallmark_hmm	common_virus	C0	12093	0	12093	GCA_001679125.1|LZDM01000045.1@region_1_12093@tool_cenote_CDS_0003	persistent	direct	high	1430	0.999	GCA_001679125.1_01802
GCA_001679125.1|LZDM01000045.1@region_1_12093@tool_cenote	cenote	CDS	3390	4931	GCA_001679125.1	LZDM01000045.1	GCA_001679125.1|LZDM01000045.1	GCA_001679125.1_LZDM01000045.1	GCA_001679125.1|LZDM01000045.1	GCA_001679125_1_36	GCA_001679125_1_36@C0	3391	4932	GCA_001679125_1_36_4	GCA_001679125_1_36_4	+	186504	.	PFAM:PF06152.10	minor-capsid-protein	MKKLINLERLKAKLANDFNVTIKDILAFLQRVVFNKEIGDLSQKEVNIVIKKTDSQLKTLFGAFITNLKTDWRGLFNHRYKVDSPKNIKALQKHADEMFKRPLQLDGKMGVTLDELLDVFNDEERKKITNAIRLAHHDGLPNAKLVQMIRGTRARNYQDGILAITTRHAKTIAHTGTAIVANQAKQAVIADNADIIKGIKILATLDLRTSSICRGLDGVFMPLDKARYPPYHFNCRTSFEIVYDDYTAPKQRASMDGVVKNQSYYEWLKNQPAQYQDEVLGKTRAKLFRDGGMTVERFRALQLDKHFTPLTLEQMRALEPKAFKKAFGVIDETKGENKPTPFYQTINLGDLKPRRSEVIRLQNEPIKHGEKPKTPRPAEAELAVLLQQYFGIYLVRYDDRYHKISPTANPPDFAKKHSDLPSKQWQTLDVMYAIGNDVDIKAYLHSMTKSDKAWDRQKENIINHIEKSDIVPLDLRKFDKQRLEKIIDFLLSLDEKQQNKILIIQGDDDDYDK*	hallmark_hmm	common_virus	C0	12093	0	12093	GCA_001679125.1|LZDM01000045.1@region_1_12093@tool_cenote_CDS_0004	persistent	direct	high	1541	0.999	GCA_001679125.1_01803
GCA_001679125.1|LZDM01000045.1@region_1_12093@tool_cenote	cenote	CDS	4915	5193	GCA_001679125.1	LZDM01000045.1	GCA_001679125.1|LZDM01000045.1	GCA_001679125.1_LZDM01000045.1	GCA_001679125.1|LZDM01000045.1	GCA_001679125_1_36	GCA_001679125_1_36@C0	4916	5194	GCA_001679125_1_36_5	GCA_001679125_1_36_5	+	186504	.	5J4A_B	tRNA nuclease CdiA (E.C.3.1.-.-), Immunity	MIMISKGNGFGTKSFANQVLASIRPSLIERFGKDSEIMQDFDNEERFFGFIALQDLSKDDFNFVAQQIINANLDEKPKIGLIEKIKADPRFA*	hhsuite_tools	hypothetical_protein	C0	12093	0	12093	GCA_001679125.1|LZDM01000045.1@region_1_12093@tool_cenote_CDS_0005	persistent	direct	high	278	0.996	GCA_001679125.1_01804
GCA_001679125.1|LZDM01000045.1@region_1_12093@tool_cenote	cenote	CDS	5316	5951	GCA_001679125.1	LZDM01000045.1	GCA_001679125.1|LZDM01000045.1	GCA_001679125.1_LZDM01000045.1	GCA_001679125.1|LZDM01000045.1	GCA_001679125_1_36	GCA_001679125_1_36@C0	5317	5952	GCA_001679125_1_36_6	GCA_001679125_1_36_6	+	186504	.	PFAM:PF06810.10	minor-structural-protein-	MSEKPTIVLSDDTQNQITQERYNELQAEVDRLRKHSETLLAEKKQQSEQRRAEQAEKERLAEETARKKGDFEALEKQYQAKIQELNEQITKRDAERDENLVKSHAQKLSSQLSDNPANQEILQILIEKRLSAKDGQLSVLDDNGTPSIMTIDDLAKQIQNCGKYDSLIIGTKSCGTGSNGQSAKRAGDYSEQERLALAHSNPALFNQLFLE*	hallmark_hmm	common_virus	C0	12093	0	12093	GCA_001679125.1|LZDM01000045.1@region_1_12093@tool_cenote_CDS_0006	persistent	direct	high	635	0.998	GCA_001679125.1_01805
GCA_001679125.1|LZDM01000045.1@region_1_12093@tool_cenote	cenote	CDS	5954	6847	GCA_001679125.1	LZDM01000045.1	GCA_001679125.1|LZDM01000045.1	GCA_001679125.1_LZDM01000045.1	GCA_001679125.1|LZDM01000045.1	GCA_001679125_1_36	GCA_001679125_1_36@C0	5955	6848	GCA_001679125_1_36_7	GCA_001679125_1_36_7	+	186504	.	PDB:6R3A_A	Major-Capsid-Protein	MAKLQEIFNKSVTLSYQVKDNLQRSKFWQSGAFVSDARLRPLLNSGSLTFDVPFIHPIDGNLEANYSNTIMTDIAMPRTTHGSKSKWRLAVLNEGFIESRLESYLTGQSPLKLMAQMIDDYWLTQAENRAIATLFGLLNYDQSNGKKLSTDISKATADDSSGFDVHAFIDAEGSLDEMHQGSGLMIVHPLIATKMRKQRLLERVTTADDLKPIDMYNGRRLIQSKRATVIGTGKNAKYVSYLLGAGAFAADMVAGHDDLELERTANTGNGSVIPRYGHAVTCLSTPKGLASSLSLVR*	hallmark_hmm	common_virus	C0	12093	0	12093	GCA_001679125.1|LZDM01000045.1@region_1_12093@tool_cenote_CDS_0007	persistent	direct	high	893	0.999	GCA_001679125.1_01806
GCA_001679125.1|LZDM01000045.1@region_1_12093@tool_cenote	cenote	CDS	6796	6969	GCA_001679125.1	LZDM01000045.1	GCA_001679125.1|LZDM01000045.1	GCA_001679125.1_LZDM01000045.1	GCA_001679125.1|LZDM01000045.1	GCA_001679125_1_36	GCA_001679125_1_36@C0	6797	6970	GCA_001679125_1_36_8	GCA_001679125_1_36_8	+	186504	.	PDB:4AN5_F	Major-Capsid-Protein	MLIHPQGFSFIAEPSTLTGGTKNEALSASWTDLTTAANWRLDADADATPIRFLITNL*	hallmark_hmm	common_virus	C0	12093	0	12093	GCA_001679125.1|LZDM01000045.1@region_1_12093@tool_cenote_CDS_0008	persistent	direct	high	173	0.994	GCA_001679125.1_01807
GCA_001679125.1|LZDM01000045.1@region_1_12093@tool_cenote	cenote	CDS	6980	7183	GCA_001679125.1	LZDM01000045.1	GCA_001679125.1|LZDM01000045.1	GCA_001679125.1_LZDM01000045.1	GCA_001679125.1|LZDM01000045.1	GCA_001679125_1_36	GCA_001679125_1_36@C0	6981	7184	GCA_001679125_1_36_9	GCA_001679125_1_36_9	+	186504	.	.	hypothetical protein	MSLPKDKVKPAFNFTYPSERAYFDESKSTLTNAQVTDPAKSGADYGIKDPQVTEALTGTKSETAKVE*	.	hypothetical_protein	C0	12093	0	12093	GCA_001679125.1|LZDM01000045.1@region_1_12093@tool_cenote_CDS_0009	persistent	direct	high	203	0.995	GCA_001679125.1_01808
GCA_001679125.1|LZDM01000045.1@region_1_12093@tool_cenote	cenote	CDS	7243	7602	GCA_001679125.1	LZDM01000045.1	GCA_001679125.1|LZDM01000045.1	GCA_001679125.1_LZDM01000045.1	GCA_001679125.1|LZDM01000045.1	GCA_001679125_1_36	GCA_001679125_1_36@C0	7244	7603	GCA_001679125_1_36_10	GCA_001679125_1_36_10	+	186504	.	CDD:cd08053	Head-Tail-Connector-Protein	MITLDDLTDIDKADEQTVVIVNAWLNKHKIRAFETTPDPIKQAGRYIAKAWLDGDLFATRTEGQVISKSSKAGDVSVSKTYADGQMGQAMSQNEQIALALIEPYLQQPLGMFGLPAVRG*	hallmark_hmm	common_virus	C0	12093	0	12093	GCA_001679125.1|LZDM01000045.1@region_1_12093@tool_cenote_CDS_0010	persistent	direct	high	359	0.997	GCA_001679125.1_01809
GCA_001679125.1|LZDM01000045.1@region_1_12093@tool_cenote	cenote	CDS	7599	7808	GCA_001679125.1	LZDM01000045.1	GCA_001679125.1|LZDM01000045.1	GCA_001679125.1_LZDM01000045.1	GCA_001679125.1|LZDM01000045.1	GCA_001679125_1_36	GCA_001679125_1_36@C0	7600	7809	GCA_001679125_1_36_11	GCA_001679125_1_36_11	-	186504	.	PF15731.5	Antitoxin component of bacterial toxin-antitoxin system, MqsA	MKPDIKSHNPNPIYIRALLKKAGLSQRKAAHMLGVSERMMRYYLVHTDDPNYRPMPYAVQFCLECLAKT*	hhsuite_tools	hypothetical_protein	C0	12093	0	12093	GCA_001679125.1|LZDM01000045.1@region_1_12093@tool_cenote_CDS_0011	shell	direct	high	209	0.995	GCA_001679125.1_01810
GCA_001679125.1|LZDM01000045.1@region_1_12093@tool_cenote	cenote	CDS	7805	8005	GCA_001679125.1	LZDM01000045.1	GCA_001679125.1|LZDM01000045.1	GCA_001679125.1_LZDM01000045.1	GCA_001679125.1|LZDM01000045.1	GCA_001679125_1_36	GCA_001679125_1_36@C0	7806	8006	GCA_001679125_1_36_12	GCA_001679125_1_36_12	-	186504	.	.	hypothetical protein	MPKPLIESLKWQSLNALSQKLKKMRVETEKLRAETFKLQKETKYYLAVSIVIALIALIASILALLK*	.	hypothetical_protein	C0	12093	0	12093	GCA_001679125.1|LZDM01000045.1@region_1_12093@tool_cenote_CDS_0012	cloud	direct	high	200	0.995	GCA_001679125.1_01811
GCA_001679125.1|LZDM01000045.1@region_1_12093@tool_cenote	cenote	CDS	8133	8498	GCA_001679125.1	LZDM01000045.1	GCA_001679125.1|LZDM01000045.1	GCA_001679125.1_LZDM01000045.1	GCA_001679125.1|LZDM01000045.1	GCA_001679125_1_36	GCA_001679125_1_36@C0	8134	8499	GCA_001679125_1_36_13	GCA_001679125_1_36_13	+	186504	.	PFAM:PF10665.8	head-closure-knob	MKQEITQEIKQAFDTDLKDAVKDFTGRRVILSHDDWAINDTGTPTEAYKGRGVFGSYSAYETDGQAVSMNDVKLTCLQSELTGTPMIDDVINGMRVLSIKKDPANISYAIQLRGLHVDDTA*	hallmark_hmm	common_virus	C0	12093	0	12093	GCA_001679125.1|LZDM01000045.1@region_1_12093@tool_cenote_CDS_0013	persistent	direct	high	365	0.997	GCA_001679125.1_01812
GCA_001679125.1|LZDM01000045.1@region_1_12093@tool_cenote	cenote	CDS	8479	8823	GCA_001679125.1	LZDM01000045.1	GCA_001679125.1|LZDM01000045.1	GCA_001679125.1_LZDM01000045.1	GCA_001679125.1|LZDM01000045.1	GCA_001679125_1_36	GCA_001679125_1_36@C0	8480	8824	GCA_001679125_1_36_14	GCA_001679125_1_36_14	+	186504	.	PFAM:PF04883.11	tail-component	MWMTPPNSFVDKVADGVDEVYRKFAIDCYNNVITLSPVDTGRYRNAHHISIGEKSLNENGGGVELVLGIAKHTYPLIYIQNNLPCALRLEHGWSQQAPTGVYGNAFNSAIANLG*	hallmark_hmm	common_virus	C0	12093	0	12093	GCA_001679125.1|LZDM01000045.1@region_1_12093@tool_cenote_CDS_0014	persistent	direct	high	344	0.997	GCA_001679125.1_01813
GCA_001679125.1|LZDM01000045.1@region_1_12093@tool_cenote	cenote	CDS	8820	9020	GCA_001679125.1	LZDM01000045.1	GCA_001679125.1|LZDM01000045.1	GCA_001679125.1_LZDM01000045.1	GCA_001679125.1|LZDM01000045.1	GCA_001679125_1_36	GCA_001679125_1_36@C0	8821	9021	GCA_001679125_1_36_15	GCA_001679125_1_36_15	-	186504	.	PFAM:PF16777.4	transcriptional-regulator	MPKIVASPKTRVQIQKESNERRGVKNKAFTLKLDDIELIKSLSKRLGIPQNQLIMDAVRAYQRQLD*	phrogs_hmm	hypothetical_protein	C0	12093	0	12093	GCA_001679125.1|LZDM01000045.1@region_1_12093@tool_cenote_CDS_0015	cloud	direct	high	200	0.995	GCA_001679125.1_01814
GCA_001679125.1|LZDM01000045.1@region_1_12093@tool_cenote	cenote	CDS	9056	9364	GCA_001679125.1	LZDM01000045.1	GCA_001679125.1|LZDM01000045.1	GCA_001679125.1_LZDM01000045.1	GCA_001679125.1|LZDM01000045.1	GCA_001679125_1_36	GCA_001679125_1_36@C0	9057	9365	GCA_001679125_1_36_16	GCA_001679125_1_36_16	+	186504	.	.	hypothetical protein	MGKEWLGLAPSLAPSSCLYFRATCLISWHAYQEQDNQGDDFVLYSVVIVLLLVVMVTMATILPIKQTLLDVLYYILAYFKSQVIVTVLYEIVMIIWLFLYLK*	.	hypothetical_protein	C0	12093	0	12093	GCA_001679125.1|LZDM01000045.1@region_1_12093@tool_cenote_CDS_0016	cloud	direct	high	308	0.997	GCA_001679125.1_01815
GCA_001679125.1|LZDM01000045.1@region_1_12093@tool_cenote	cenote	CDS	9554	10270	GCA_001679125.1	LZDM01000045.1	GCA_001679125.1|LZDM01000045.1	GCA_001679125.1_LZDM01000045.1	GCA_001679125.1|LZDM01000045.1	GCA_001679125_1_36	GCA_001679125_1_36@C0	9555	10271	GCA_001679125_1_36_17	GCA_001679125_1_36_17	+	186504	.	cd08073	Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) found in proteins also containing NlpC/P60 domains. This family contains bacterial MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains at the N-terminus of NlpC/P60 phage tail protein domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation.  The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.	MLWLIIDGQFYPCDNIAPNPYEHFEIDHLDMIEMEEKGEIQAIVHSHPDGNAEPSEVDRVQMSIHGADWVICGFGYHADGKEYFDIKRHKPKAYQSPLLGREYHHGVQDCYSVVRDYYHRELDINLPDFYRTDGWWEKQNHLPLYENNFTKAGFEVVNDTPKKHDVILCRVGRTHHVNHALIWLGDDGALTSETTPDCVGNALILHHPHGGLSVREIYGDNWQRRTAMVVRHGRLDKG*	mmseqs_cdd	common_virus	C0	12093	0	12093	GCA_001679125.1|LZDM01000045.1@region_1_12093@tool_cenote_CDS_0017	cloud	direct	high	716	0.999	GCA_001679125.1_01816
GCA_001679125.1|LZDM01000045.1@region_1_12093@tool_cenote	cenote	CDS	10242	10547	GCA_001679125.1	LZDM01000045.1	GCA_001679125.1|LZDM01000045.1	GCA_001679125.1_LZDM01000045.1	GCA_001679125.1|LZDM01000045.1	GCA_001679125_1_36	GCA_001679125_1_36@C0	10243	10548	GCA_001679125_1_36_18	GCA_001679125_1_36_18	-	186504	.	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain [Defense mechanisms]. 	MFKNGMRPIHAGEILREEYLIPHGISATALAHALDVTPARINDIVRERRGISADTALRLARYFGGTAGFWLNLQMTYELRLAETELADSLDFISPYQAAHA*	mmseqs_cdd	nonviral_gene	C0	12093	0	12093	GCA_001679125.1|LZDM01000045.1@region_1_12093@tool_cenote_CDS_0018	cloud	direct	high	305	0.997	GCA_001679125.1_01817
GCA_001679125.1|LZDM01000045.1@region_1_12093@tool_cenote	cenote	CDS	10571	10849	GCA_001679125.1	LZDM01000045.1	GCA_001679125.1|LZDM01000045.1	GCA_001679125.1_LZDM01000045.1	GCA_001679125.1|LZDM01000045.1	GCA_001679125_1_36	GCA_001679125_1_36@C0	10572	10850	GCA_001679125_1_36_19	GCA_001679125_1_36_19	-	186504	.	COG3549	Plasmid maintenance system killer protein  [Defense mechanisms]. 	MIKGFKCKDTQNLFETGSSRVFSNFISVATRKLTMLDNAITLADLRTPPANRLEKLTADREGQYSIRINDQFRICFVWGDDGVYDVQIVDYH*	mmseqs_cdd	nonviral_gene	C0	12093	0	12093	GCA_001679125.1|LZDM01000045.1@region_1_12093@tool_cenote_CDS_0019	shell	direct	high	278	0.996	GCA_001679125.1_01818
GCA_001679125.1|LZDM01000045.1@region_1_12093@tool_cenote	cenote	CDS	10952	11173	GCA_001679125.1	LZDM01000045.1	GCA_001679125.1|LZDM01000045.1	GCA_001679125.1_LZDM01000045.1	GCA_001679125.1|LZDM01000045.1	GCA_001679125_1_36	GCA_001679125_1_36@C0	10953	11174	GCA_001679125_1_36_20	GCA_001679125_1_36_20	+	186504	.	PFAM:PF06805.11	tail-assembly-protein-I	MKTIILHGILAKKFGKSFNLDVKTAKEACHALACQIPAFYEFMMNAHVLGIKFAVFNGKDRTQKNQHRFGAVR*	hallmark_hmm	common_virus	C0	12093	0	12093	GCA_001679125.1|LZDM01000045.1@region_1_12093@tool_cenote_CDS_0020	cloud	direct	high	221	0.995	GCA_001679125.1_01819
GCA_001679125.1|LZDM01000045.1@region_1_12093@tool_cenote	cenote	CDS	11715	12092	GCA_001679125.1	LZDM01000045.1	GCA_001679125.1|LZDM01000045.1	GCA_001679125.1_LZDM01000045.1	GCA_001679125.1|LZDM01000045.1	GCA_001679125_1_36	GCA_001679125_1_36@C0	11716	12093	GCA_001679125_1_36_21	GCA_001679125_1_36_21	+	186504	.	PFAM:PF13550.5	tail-protein	MYGLCEGQIAGLADGGKSIRLDGTPIIGENQQIDLAGIEWDFRAGSIDQTPISGFAMVENEMAVGVELRSDKPFVRTINNRELSAVRVCLNFNALKQHHEKATLQDMPSAMPLTYKPMAVHSNRC*	common_virus_hmm	common_virus	C0	12093	0	12093	GCA_001679125.1|LZDM01000045.1@region_1_12093@tool_cenote_CDS_0021	persistent	direct	high	378	1.0	GCA_001679125.1_01820