core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote	cenote	CDS	4485661	4486410	GCA_001700965.1	CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965.1_CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965_1_1	GCA_001700965_1_1@C239	1	750	GCA_001700965_1_1_3774	GCA_001700965_1_1_3774	-	4541729	.	.	hypothetical protein	MVRNLCLSQDMVAELVKQDPALAYLGGSKRSLATMQLVLQSADPNVRKGLDEMLASAMGGNVKTREMLSPALAGCLVAGVRMAPERRQLALTWLQEDSMAGKTTAIEQLMTLALLKEVEGGGNAAATYFQQLPGKTLDTISPDSVGIGLFAMQEIAANNIINAAIQSYYTRSPQPLAGVPQPAVTYRFCNNSVAAAAGQARGVHRVAAFANARLQQLPEPVWNCDMTAIKEEVRTISWGTDVPSSPAPK*	.	hypothetical_protein	C239	46031	4485661	4531692	GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote_CDS_0001	cloud	direct	high	749	0.999	GCA_001700965.1_03905
GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote	cenote	CDS	4486545	4487513	GCA_001700965.1	CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965.1_CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965_1_1	GCA_001700965_1_1@C239	885	1853	GCA_001700965_1_1_3775	GCA_001700965_1_1_3775	-	4541729	.	PRK10262	thioredoxin reductase; Provisional	MSTSSLPTKHTRLLILGSGPAGWTSAVYGARANLKPLVVTGLQQGGQLMTTTEVDNWPGDAHGLMGPDLMARMQAHAERFDTEVVFDHIHTADLSKRPFTLTGDSTQYTADALIIATGATAKYLGIPSEEAFKGRGVSACATCDGFFYKDQDVVVVGGGNTAVEEALYLSNIARKVYLVHRRDTLKAEKIMQDKLFAKVAAGKIETVWHHQVDEVLGNDAGVTGVRVKSTLDGSTRDIEAHGFFVAIGHQPNTELFTGQLAMNNGYLEIRSGLGGNATMTSVEGVFAAGDVADQHYRQAITSAGFGCMAALDAERFLDEKGA*	mmseqs_cdd	nonviral_gene	C239	46031	4485661	4531692	GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote_CDS_0002	persistent	direct	high	968	0.999	GCA_001700965.1_03906
GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote	cenote	CDS	4487802	4490168	GCA_001700965.1	CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965.1_CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965_1_1	GCA_001700965_1_1@C239	2142	4508	GCA_001700965_1_1_3776	GCA_001700965_1_1_3776	+	4541729	.	PDB:2IUS_D	DNA-TRANSLOCASE-FTSK	MAKQVPERDKSPKAAADARKQAAAADNPRRQKLWRDLALIAIAPALLYLLASLFTYSPTDPGWSQSGSVIAPVHNMGGKVGAWIADVLRQLFGYVAYLIPVMLAAVAWIAMFGLKKNDERGQDDLGPALRLVGIVGFLIGATGFLYLRLPPGDVARAGGGLGVLVGKSLQTGFGPVGSNLFLLVLLLTSITLATGLSWFAVMEKIGKWVLALGPVLNKKKEQASEWQQTRVLREEREEVRKVDAEVRAKREPVKIEPRPAPVIEKSDRAKRETQIPMFQGVNGDGSDIPPLALLDDPKPQPKGYDEQTLETLSRQIEFKLKDFRIDAQVVGAYPGPVITRFEIEPAPGIKVSQISSLDKDIARGLSVKSVRVVDVIPGKSVIGLEIPNVTREMIFLSELLRSKEYDKSASPLTLALGKDIAGRPTVADLARMPHLLVAGTTGSGKSVAVNAMVLSLLYKASPKDLRMLMIDPKMLELSVYQGIPHLLAPVVTDMKEAGNGLRWCVAEMERRYKLMSAVGVRNLAGFNKKVKDAIDAGQPLMDPLFKPNPEMGEAPRPLEPLPFIVIFIDEFADMMMIVGKKVEELIARLAQKARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTILDQSGAEALLGNGDMLYLPPGTAMPDRVHGAFVSDEEVHRVVEHLKASGPTDYIEGVLDEVQTMGDGVVVGANGLPESSASAGDESDPLYDEALRIVTETRRASISGVQRRLKIGYNRAARLIEAMEAAGVVTAPEHNGDRTVLAPPPPKH*	common_virus_hmm	common_virus	C239	46031	4485661	4531692	GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote_CDS_0003	persistent	direct	high	2366	1.0	GCA_001700965.1_03907
GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote	cenote	CDS	4490262	4490900	GCA_001700965.1	CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965.1_CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965_1_1	GCA_001700965_1_1@C239	4602	5240	GCA_001700965_1_1_3777	GCA_001700965_1_1_3777	+	4541729	.	PRK00031	outer membrane lipoprotein chaperone LolA. 	MTAFLRHSVLAVALACAGLAADAHAGARDDLKSFTNGLRGLDGQFAQQVVDLRGRVKESSSGRVALSAPRQFRWEYTRPHPQLIIADGSKLWVYEPDLEQARVSPQGTEEQNNPLTALINPALLEQQYDISEEAAPRDGMQWLSLTPKRDTQASFDVAALGFSGGGLSRMELVDAVGQRTIITFSGWKKNPSFAAGTFRFVPGKDVDVVGER*	mmseqs_cdd	nonviral_gene	C239	46031	4485661	4531692	GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote_CDS_0004	cloud	direct	high	638	0.998	GCA_001700965.1_03908
GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote	cenote	CDS	4491027	4492322	GCA_001700965.1	CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965.1_CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965_1_1	GCA_001700965_1_1@C239	5367	6662	GCA_001700965_1_1_3778	GCA_001700965_1_1_3778	+	4541729	.	PDB:1SXJ_D	Activator-Clamp-Loader	MRPLAERMRPRTLDEMVGQKRLLAPNTALRRAVESGRVHSMILWGPPGCGKTTLALLLAQYADAEFKAISAVLSGLPDVRQVLAEAAHRFADGRRTVLFVDEVHRFNKAQQDAFLPHIERGTIIFVGATTENPSFELNSALLSRCRVHVLESVSPEDVVEALQRALADTERGLGEQEITVSPESLLEIARAADGDVRRALTLLEIAAELAAGEGGEITPETLLQVLADRTRRFDKNGEQFYDQISALHKSVRSSNPDGAIYWLARMLDGGCDPSYLLRRLTIMAVEDVGLADPRALEMAINVWNAYDRIGAPEGDIALSNLVVYLASTAKSNAAYMSLHAARADIANYGTQPVPMHLRNAPTRLMKTLGYGQGYQYDHDVEGGIALDQTAFPDDMGEQVYYKPVERGLEIKLKDKLDRLRLAREQARAQRK*	common_virus_hmm	common_virus	C239	46031	4485661	4531692	GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote_CDS_0005	persistent	direct	high	1295	0.999	GCA_001700965.1_03909
GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote	cenote	CDS	4492360	4492746	GCA_001700965.1	CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965.1_CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965_1_1	GCA_001700965_1_1@C239	6700	7086	GCA_001700965_1_1_3779	GCA_001700965_1_1_3779	+	4541729	.	PRK14196	fluoride efflux transporter CrcB. 	MWLSFLAIGVGAALGAWLRYGLSLWLNPLHNTVPLGTLTANLLGGYVIGLALAFFATRPELSPQWRLFVVTGLLGGLTTFSTFSAEVVYLLQRQQLGWGLLTIGLHLIGSLSMTAFGWWTWRVLRHLT*	mmseqs_cdd	nonviral_gene	C239	46031	4485661	4531692	GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote_CDS_0006	persistent	direct	high	386	0.997	GCA_001700965.1_03910
GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote	cenote	CDS	4492836	4493876	GCA_001700965.1	CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965.1_CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965_1_1	GCA_001700965_1_1@C239	7176	8216	GCA_001700965_1_1_3780	GCA_001700965_1_1_3780	+	4541729	.	PRK12408	glucokinase; Provisional	MSTPASADAARIDAIAGSLPASTIIGADVGGTYARLGWTQQQADGSLSVNGFRKYACAEHPSLAAILRDYADWLARETDAPPIAHAVVAIAGVVDGDNLLNTNLAWPVSLAATRNDSGLPSLEFINDFVAVAQAMAHAEADSLHLICGQPERGAAGPALVLGPGTGLGVAVYLPGGSPSVLPSEAGHAALAGSTALEHDVLQLLSQRYEHIDNERVLSGPGLITLYTILCELRGTTPQWHTPAELVDAARNGSDALAMESVEVFCAWLGSLAGDLALTFGARAVYLTGGITGHLSGPLHAGGFQQRFLAKGRLSAALKHVPVWRVEHGELGVLGALAWHVDKRATR*	mmseqs_cdd	nonviral_gene	C239	46031	4485661	4531692	GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote_CDS_0007	cloud	direct	high	1040	0.999	GCA_001700965.1_03911
GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote	cenote	CDS	4493908	4494915	GCA_001700965.1	CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965.1_CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965_1_1	GCA_001700965_1_1@C239	8248	9255	GCA_001700965_1_1_3781	GCA_001700965_1_1_3781	+	4541729	.	cd04513	Glycosylasparaginase and similar proteins. Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoproteins. This enzyme is an amidase located inside lysosomes. Mutation of this gene in humans causes a genetic disorder known as aspartylglycosaminuria (AGU). The glycosylasparaginase precursor undergoes autoproteolysis through an N-O or N-S acyl rearrangement of the peptide bond, which leads to the cleavage of a peptide bond between an Asp and a Thr. This proteolysis step generates an exposed N-terminal catalytic threonine and activates the enzyme.	MTTRRQFLQTSALLGALGTTAPGVLASPAAANGARVVSTWDFGVGANQAAWKVLAAGGSALDAVEAGARWAESELCNSTVGHCGNPDRDGVLSLDASIMSGDGRCGSVAAIVDILHPITVARAVMEKTPHVMLVGEGAQQFAVQQGHERRNLLTPAAEKAWREWLKTEHYAPQINAERRGIPGDKDNHDTLGMIAIDNKGDMAGACTTSGMAFKMHGRVGDSPIIGAGLYVDNEVGAATASGMGEEMIRNAASFLVVELMRQGRSPADACLEAIQRVVRKRPEASRTLQVCFLAMNRSGEVGAYALHRGFVYAVCDSNKQDALLESASVYTSTQA*	mmseqs_cdd	nonviral_gene	C239	46031	4485661	4531692	GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote_CDS_0008	persistent	direct	high	1007	0.999	GCA_001700965.1_03912
GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote	cenote	CDS	4494912	4495649	GCA_001700965.1	CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965.1_CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965_1_1	GCA_001700965_1_1@C239	9252	9989	GCA_001700965_1_1_3782	GCA_001700965_1_1_3782	+	4541729	.	COG3142	Copper homeostasis protein CutC [Inorganic ion transport and metabolism]. 	MSSPYLLEIACNSAMSALAAQQGGANRIELFENLEQGGTTPSSGSIAIARDKVQIPLYVLIRPRPGDFHYGPIETEIMLRDIAHCRQLGCDGVVIGALDADGQIDVALCRELIRVAGPLDITFHRAFDAARDLPAALEQIVELGIKRILSSGGQTSAVEGSARLAKLVKQAGYRLQLMAGAGLNAANIADVARQSGCLQLHASAKALQRSAMRYRNPALKGLESNWVQSQAEMVCALRQALDAIS*	mmseqs_cdd	nonviral_gene	C239	46031	4485661	4531692	GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote_CDS_0009	cloud	direct	high	737	0.999	GCA_001700965.1_03913
GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote	cenote	CDS	4497210	4498373	GCA_001700965.1	CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965.1_CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965_1_1	GCA_001700965_1_1@C239	11550	12713	GCA_001700965_1_1_3783	GCA_001700965_1_1_3783	-	4541729	.	PFAM:PF05707.11	Zonular-occludens-toxin-(Zot)	MIGDTASISLLTGLPGSGKSLRMTQRIVELVEKGEHVYTCNINGISVPGVTPWDDPTRWRDLPAGAVLFVDEAQQYFRARRGGDPPEYISAMETIRHVGVRLVLATQQPNYLDTHLRGLVGFHEHLLRQSGKDETFIFRNHQVMDEVRMGLKRIKGLYDHEKWKLPQKYFQYYKSAELHTVKYRMPALLKKVLITGPIAILLAASVFGWLFWKGIRGQAEAEEMAATAPVAQPGQSSASAVRSDGERPAPRTGEQYIAALTPMVADVPWSAPAYVDRAVVSDPHVYCMASENSCRCVTEQSTRVVLRDDVCRDIARWGEPYNPYKQPAQPPQGGPVPYGAGDAQPTHLSQAGAPSSVVGYSSGSRGDVFPKNPARTIGGYTPPTSTL*	hallmark_hmm	common_virus	C239	46031	4485661	4531692	GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote_CDS_0010	cloud	direct	high	1163	0.999	GCA_001700965.1_03914
GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote	cenote	CDS	4498370	4498684	GCA_001700965.1	CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965.1_CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965_1_1	GCA_001700965_1_1@C239	12710	13024	GCA_001700965_1_1_3784	GCA_001700965_1_1_3784	-	4541729	.	PFAM:PF10734.8	Minor-Head-Virion-Protein	MSWFSVDNPFLGALAGVLNKLLKLKLALWIGKALSALGLGFAAQHFVYEPLIDQAVNVWNAVPAIAANWVHALGLDTAISIMLSAYGIQGVQRVFLSRKYEPPV*	hallmark_hmm	common_virus	C239	46031	4485661	4531692	GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote_CDS_0011	cloud	direct	high	314	0.997	GCA_001700965.1_03915
GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote	cenote	CDS	4498686	4500191	GCA_001700965.1	CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965.1_CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965_1_1	GCA_001700965_1_1@C239	13026	14531	GCA_001700965_1_1_3785	GCA_001700965_1_1_3785	-	4541729	.	PFAM:PF05616.12	attachment-protein	MRWLFTLLLVAAYVWQGIDPVQAQSSASCASSGICDQGEAYSQCKAAVSNSMSYYEPYGGYPKIAKDCTSVVDSYGNGGFECVVHATGPSTPRCRVSGSDGGDSSKTFWFSSGKTCSARNVTTPAGDKSAGSPMPWPSCVAGCKIQQEQISYSQPGGVMLYGRRNATYLNETCTSQSLSQNGAIDTREEQPKPTEPECTALGGGQTSCFKSNGDHCATASTGKTFCWTPNETGKKIDGDDAQVKGKKGEPVTPPNVKIDNKDWQRKEGHQQTACINNTCTTYNVTNYQTAPAGSAKNSTGDNQPDGSGNTSGNGKPSKGDGKDGDKDDGDSATDSGNCDTPPICTGDTLKCLQLKFTWKIECNTKGNEITNGTGCGENDIPVCAGKSCKAEAYSQVLQQWKQRCSFEGDRDAAKGDARSGAADGAGDDLAGVVGGLWAGDGVTPTLNQNRLSIGGGNVIPDVDIMGTKVVMPQGFYDALAIIKKIIIAAAMIAAFPILWRR*	common_virus_hmm	common_virus	C239	46031	4485661	4531692	GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote_CDS_0012	cloud	direct	high	1505	0.999	GCA_001700965.1_03916
GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote	cenote	CDS	4500304	4500561	GCA_001700965.1	CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965.1_CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965_1_1	GCA_001700965_1_1@C239	14644	14901	GCA_001700965_1_1_3786	GCA_001700965_1_1_3786	-	4541729	.	PFAM:PF10389.8	head-protein	MNRNTRETALIRAKAVGRSLRDRVGAAVALGGAAAAPGLAFAADGFDSATVLAAIAAMVAAGVLIYTAYAVGKWTMKAFGLIGGK*	phrogs_hmm	hypothetical_protein	C239	46031	4485661	4531692	GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote_CDS_0013	cloud	direct	high	257	0.996	GCA_001700965.1_03917
GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote	cenote	CDS	4500765	4501055	GCA_001700965.1	CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965.1_CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965_1_1	GCA_001700965_1_1@C239	15105	15395	GCA_001700965_1_1_3787	GCA_001700965_1_1_3787	-	4541729	.	PDB:1GVP_A	Rep-protein	MELIKVTILSAEVTERKGTFEDDSGKERAYTTRKQKAKLEAGGFGYPYDVRLEEGQTAYPVGEYVMDTASMIQVNKGTANWSKFPALVRATVPAKA*	rep_hall_hmm	common_virus	C239	46031	4485661	4531692	GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote_CDS_0014	cloud	direct	high	290	0.997	GCA_001700965.1_03918
GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote	cenote	CDS	4501069	4502169	GCA_001700965.1	CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965.1_CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965_1_1	GCA_001700965_1_1@C239	15409	16509	GCA_001700965_1_1_3788	GCA_001700965_1_1_3788	-	4541729	.	PFAM:PF02486.18	Replication-initiation-factor	MHEAAASGLPSSNRGVSETERIGVVIDWLASAFDLISVLDVYGMVDDRKAVLDDLDGPVGSCVRAVAQALAGHFFPGLFELGDPSRGRFYNWRVSLQAGGEHVGLLEFGGLATVRKDGVHTARLELTGNGCRIFEASSGDDHAQRWSSLASLLGLSDARITRVDIAADDFLGQWPVQWAVDRYNEGGFDRRGQRPKARLIDDMGNRTGKTFYVGSRKSEQQLRVYEKGREQGDMASEWVRYEGEFHASNRRELPLDMLTDPAPYLVGSYPILDFVDGIGQRLRIATEKLLANCTRAVMHFRRQYGPMINAMLHASGGDESTLSRLIVGTARAKLPPWCPRPEDAAQLLTAILFAPSGHIDSPESRA*	rep_hall_hmm	common_virus	C239	46031	4485661	4531692	GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote_CDS_0015	cloud	direct	high	1100	0.999	GCA_001700965.1_03919
GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote	cenote	CDS	4502162	4502473	GCA_001700965.1	CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965.1_CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965_1_1	GCA_001700965_1_1@C239	16502	16813	GCA_001700965_1_1_3789	GCA_001700965_1_1_3789	-	4541729	.	.	hypothetical protein	MANRVPYGIRRVDPRFYEPLPASSHLDVEVEALRAMPQPNYEIEHRIGDGPWLPKCRYGRDDAWAVARARWWNALLRGRRSYRVVAVLGSTRTVVYGEGASYA*	.	hypothetical_protein	C239	46031	4485661	4531692	GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote_CDS_0016	cloud	direct	high	311	0.997	GCA_001700965.1_03920
GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote	cenote	CDS	4502979	4503116	GCA_001700965.1	CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965.1_CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965_1_1	GCA_001700965_1_1@C239	17319	17456	GCA_001700965_1_1_3790	GCA_001700965_1_1_3790	-	4541729	.	.	hypothetical protein	MQLDGLKLHQLYAVRRHWARLGDAAKVVQVEAAIDERIALIGGAK*	.	hypothetical_protein	C239	46031	4485661	4531692	GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote_CDS_0017	cloud	direct	high	137	0.993	GCA_001700965.1_03921
GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote	cenote	CDS	4504383	4505273	GCA_001700965.1	CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965.1_CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965_1_1	GCA_001700965_1_1@C239	18723	19613	GCA_001700965_1_1_3791	GCA_001700965_1_1_3791	-	4541729	.	pfam11740	Plasmid replication region DNA-binding N-term. The broad host-range plasmid RK2 is able to replicate in and be inherited in a stable manner in diverse Gram-negative bacterial species. It encodes a number of co-ordinately regulated operons including a central control korF1 operon that represses the kfrA operon. The KfrA polypeptide is a site-specific DNA-binding protein whose operator overlaps the kfrA promoter. The N-terminus, containing an helix-turn-helix motif, is essential for function. Downstream from this family is an extended coiled-coil domain containing a heptad repeat segment which is probably responsible for formation of multimers, and may provide an example of a bridge to host structures required for plasmid partitioning.	MARGITESDVHTAADALVANGERPTVERIRAHLGTGSPNTVTRWLDTWWKNLGLRLQSKRPDLKDAPAVLAELAGQWWALALQHARESVLEELAGARQSLAAEYDELRVQQQNFAEEASALHAQATASAQTERLALTQVTELRQLVDQLQSQLTESTQQRASVDQRLEQLDVAKQTLEARLHDERELARSERESLMEHARSVENRAAREVDQARQQIKDLQTKLASAEKLRVTTEQSLASALKAAQNAAAVSSKEADRQRAKSEVLEEQLSKIPAAIEAALRGKRKLPAPRKAKAK*	mmseqs_cdd	nonviral_gene	C239	46031	4485661	4531692	GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote_CDS_0018	cloud	direct	high	890	0.999	GCA_001700965.1_03922
GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote	cenote	CDS	4505378	4506466	GCA_001700965.1	CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965.1_CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965_1_1	GCA_001700965_1_1@C239	19718	20806	GCA_001700965_1_1_3792	GCA_001700965_1_1_3792	+	4541729	.	PDB:3T79_A	DNA-recombinase	MKDNSTIPVLAATAASLVLPEQLAQQAADAVRELLAEAAAENTTRSYTSALRYWAGWHAARYGIELMLPVHEATVLQFVVDHVQRRSTEGELTWELPPAVDQALVAAGLKAKLGPWTLSTVRHRIAVLSTAHRLKQVTNPCEQPAIRTVLSRAARAAVKRGERPRKKTAITLPELEAMLATCDDSLEGIRDRALLCFGFASGGRRRSEIAAADLRDLRRIGEAGYIYRLEHSKTQQAGVTATSTPDKPVLDRAALALQEWLEASGITEGAIFRRLWKQRVGPALSPAAVGEIVQRRARLAGLEGDFGGHSLRSGFVTEASRQGVALPAIMQLTEHRSVSSVVGYFQTGGAADNPAARLLDSE*	common_virus_hmm	common_virus	C239	46031	4485661	4531692	GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote_CDS_0019	shell	direct	high	1088	0.999	GCA_001700965.1_03923
GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote	cenote	CDS	4506710	4508050	GCA_001700965.1	CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965.1_CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965_1_1	GCA_001700965_1_1@C239	21050	22390	GCA_001700965_1_1_3793	GCA_001700965_1_1_3793	+	4541729	.	6YII_A	Transcriptional regulator	MSSRTWNESRADKRIQATIDEVSISDITIKPYVRDTDLRSLSNKVAYRVDGVHLYADIVNLEDLLNVTMIEGEMCHRRTLRFLNLHYRAVERILANEDAILVDFHNQRLHSVVAKPYDDEAKRIHRAIAIGQMIMDVLARTGEDADHPAAKVRIGIDSGLALAVNNGRRGHREPLFLGEPANHAAKRSGGGKAAGIYLTNNARQKIGLAKVTSEDAAPLTVDEIKTSQNEVNLVSTVDKVVKDWEADLKAHPIGKFEFSAHTPPYAGLDFERLSVAATRRQDAATVYADIDGFTKFVSRNIADDLNAKHVVRALRVLRSELDAVLHTEFKGRKVRFIGDCVHGLLIEGTCANTNEEETISNMVLCAGGMRSSFALALKKLHTAGTNASSLGLQIGFEFGPMTATRLGMKGDLIRCSVSRGVLTAEREQGRCKGAETAIGAEAFKTG*	hhsuite_tools	hypothetical_protein	C239	46031	4485661	4531692	GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote_CDS_0020	cloud	direct	high	1340	0.999	GCA_001700965.1_03924
GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote	cenote	CDS	4508284	4508439	GCA_001700965.1	CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965.1_CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965_1_1	GCA_001700965_1_1@C239	22624	22779	GCA_001700965_1_1_3794	GCA_001700965_1_1_3794	-	4541729	.	.	hypothetical protein	MKSGDNYLDTHRNARAHQSDPCVDLSSVHIILHRASRPDSGRLRRDRVKLG*	.	hypothetical_protein	C239	46031	4485661	4531692	GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote_CDS_0021	shell	direct	high	155	0.994	GCA_001700965.1_03925
GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote	cenote	CDS	4508436	4510190	GCA_001700965.1	CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965.1_CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965_1_1	GCA_001700965_1_1@C239	22776	24530	GCA_001700965_1_1_3795	GCA_001700965_1_1_3795	-	4541729	.	PFAM:PF04986.12	Putative-transposase	MLCLTAPEGRAAPRVARAANTALAAAPSYARHVPERTLLYALVEAHYPDFIASLEAQDRSLPEYVREEFETYLRCGVLEHGFLRVVCEQCRAERLVAFSCKKRGFCPSCGARRMAESARHLVEEVFGPRPVRQWVLSFPYPLRFLFASKPEAIGPVLVIVQRVIAGWLADQVGVDHASAQCGAVTLIQRFGSALNLNVHFHMLWLDGVYDANVEPPRRKPRLRRARAPTSAQLTQLANTIAHRVCRHLSRRGWLEGEDESVFLSDSAGIRADGRPEAVRPAPAHALSEQERAAILEVANAPQYAALPPAQIVPRLADEGRYLASESSFHRVLHQAGQASHRGRAKTPQARRKPTTHVARAPNQVWCWDVTWLPSQVTGRWFYLYLILDLYSRKIVGHEVHEVESGEHAAHLLKRTALAEGIHAATNKPVLHGDNGAALKATTVLAMLQWLGVAPSYSRPRVSDDNAFVESLFRTAKYRPGFPIRGFADLQDARTWAAQFVHWYNHEHLHSGLRFVAPAVRHAGQDAAQLQVRTQVYELARQRHPQRWTGTIRDWSRVGAVTLNPDRDTVVPAQSKQNESKRLAA*	common_virus_hmm	common_virus	C239	46031	4485661	4531692	GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote_CDS_0022	cloud	direct	high	1754	0.999	GCA_001700965.1_03926
GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote	cenote	CDS	4510420	4511298	GCA_001700965.1	CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965.1_CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965_1_1	GCA_001700965_1_1@C239	24760	25638	GCA_001700965_1_1_3796	GCA_001700965_1_1_3796	+	4541729	.	COG0533	tRNA A37 threonylcarbamoyltransferase TsaD [Translation, ribosomal structure and biogenesis]. 	MRQTLAEAGLKIDEIDGVAYTAGPGLVGALLVGAGVARALAWALDVPAVAVHHMEGHLLAPLMEDDPPQPPFVALLVSGGHTQLVAVDGIGRYRLLGETLDDAAGEAFDKTAKMMGLPYPGGPQLAALAEQGVPGRFRFARPMTDRPGLDFSFSGLKTQVLLAWQQSDQSPQTKADIARGFEDAVVDTLAIKCERALDAAGCDVIVVSGGVGANKRLRAKLQEMADKRGGRACFPRPSLCTDNGAMIAFAGALRLQAGQREDAAVHVVPRWDMASLPPVAAERESGIGNGES*	mmseqs_cdd	nonviral_gene	C239	46031	4485661	4531692	GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote_CDS_0023	persistent	direct	high	878	0.999	GCA_001700965.1_03927
GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote	cenote	CDS	4511308	4511733	GCA_001700965.1	CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965.1_CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965_1_1	GCA_001700965_1_1@C239	25648	26073	GCA_001700965_1_1_3797	GCA_001700965_1_1_3797	+	4541729	.	PRK11593	bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase. 	MRLLLPFPIPDSRFPIPALMDKVFIEALEIDALIGIYDWERRIRQTLVFDLEMGFDNRIPAASDDIALTLNYKAVSKRLVEYVSQSDFGLVETLAERCAEIVMNEFNVDWLRLKLSKPGAVRGARAVGVIIERVRTPQGNG*	mmseqs_cdd	nonviral_gene	C239	46031	4485661	4531692	GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote_CDS_0024	persistent	direct	high	425	0.998	GCA_001700965.1_03928
GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote	cenote	CDS	4511734	4513014	GCA_001700965.1	CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965.1_CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965_1_1	GCA_001700965_1_1@C239	26074	27354	GCA_001700965_1_1_3798	GCA_001700965_1_1_3798	+	4541729	.	6LYP_B	Mechanosensitive ion channel protein 1	MQEQLETLRTTLAPYPGAYTGIVIAALLLAAWLANWLTKRVLLRGLRRLLRATPLGGAQHDHEVQLRVIPRLANVVPALVIAAGIAVVPDLPAQVVTVVRALCQAFIVLTVALSISRALDLANQVYERRPDARNKPIKGYLQVAKIIMFVLVAISIVATLVGAQFLHILTGLGAMTAVLMLIFQDTILSLVASVQISNDGRVRIGDWIEMPSQNADGDVIDIALHTITVQNWDKTITTVPTKKLISDSFKNWRGMSESGGRRIKRAIYLDQHSVRFLEAGEVSRLHRFALIDGYLGEKQRELGEWNARPEVRGAEAVNQRRVTNLGTFRAYVEQYLRHHPKIHQDMTLLVRQLQPTSEGLPLEIYCFTNDVRWAFYEGIQSDIFDHLLAILPEFGLKVFQGSSDAPLDVNLRRVDAPSHPAGPGEG*	hhsuite_tools	hypothetical_protein	C239	46031	4485661	4531692	GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote_CDS_0025	cloud	direct	high	1280	0.999	GCA_001700965.1_03929
GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote	cenote	CDS	4513100	4513726	GCA_001700965.1	CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965.1_CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965_1_1	GCA_001700965_1_1@C239	27440	28066	GCA_001700965_1_1_3799	GCA_001700965_1_1_3799	+	4541729	.	COG0801	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme transport and metabolism]. 	MPTAYLSLGSNLDPVRFLREGIAALRARFDDVAVSAAYRFPAVGYDGPDFINAAAAIRTELSPEALNAWLHALEDAHGRDRSGPRYSDRTLDIDIVLYDDLVAEGVGNLRIPRDELRHAFVLKPLAQIAPGAVHPLERRTIAELWQAHPDHDVAFDEVAYRKFKRPFRAVCWVGGGRASPVLGTDRTSVSGISASRGHAAALSAAMLR*	mmseqs_cdd	nonviral_gene	C239	46031	4485661	4531692	GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote_CDS_0026	cloud	direct	high	626	0.998	GCA_001700965.1_03930
GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote	cenote	CDS	4513818	4514378	GCA_001700965.1	CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965.1_CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965_1_1	GCA_001700965_1_1@C239	28158	28718	GCA_001700965_1_1_3800	GCA_001700965_1_1_3800	-	4541729	.	PFAM:PF04986.12	Putative-transposase	MKRGALAPRCCRYITRPAISEQRLSISPQGRVRYQLKTPWRNGTTHVEWDPVDFIAKLAALVPPPRAHLTRFHGVFAPNAALRAQLTPSGRGRRHDAAVEPADASANDAPRSPEEKRRSMSWAQRLKRVFSIDVTACVHCGGTVRIVASIEEPAAIRAILGHFVKQGAREEAHYRPAARAPPVQAA*	common_virus_hmm	common_virus	C239	46031	4485661	4531692	GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote_CDS_0027	cloud	direct	high	560	0.998	GCA_001700965.1_03931
GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote	cenote	CDS	4514428	4515357	GCA_001700965.1	CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965.1_CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965_1_1	GCA_001700965_1_1@C239	28768	29697	GCA_001700965_1_1_3801	GCA_001700965_1_1_3801	-	4541729	.	COG1028	NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family [Lipid transport and metabolism, Secondary metabolites biosynthesis, transport and catabolism, General function prediction only]. 	MGKLAGKIVVVTGSVSVIPGFDSIGSATVREALAEGADGVVISDINDEQGEAFAKSLNEEYGEGHALYVHTDVTDPKDVEKLFEITEKTYGRVDAIMANAGVATAEDFDKDPEEVLKSKKFIQSVNEDGVFNTALYGSRLMMKHGTKGSIVLVSSIHGVAGRPKVVNTETGEVLIERFNLVQYTMGKHGVVGLSKALALQFAEYGIRVNTVNPGYIMTPLFQAAVTTDKEKLSHEKSLETDAFDFTQLAALHPLCNDPVKDADIVPRGKFGGRMGVPAEIAKPAVFLMSDESSFMTGQKLVVDGGYTAC*	mmseqs_cdd	nonviral_gene	C239	46031	4485661	4531692	GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote_CDS_0028	cloud	direct	high	929	0.999	GCA_001700965.1_03932
GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote	cenote	CDS	4515672	4517210	GCA_001700965.1	CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965.1_CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965_1_1	GCA_001700965_1_1@C239	30012	31550	GCA_001700965_1_1_3802	GCA_001700965_1_1_3802	-	4541729	.	PFAM:PF04986.12	Putative-transposase	MLCLTAPEGRAAPRVARAANTALAAAPSYARHVPERTLLYALVEAHYPDFIASLEAQDRSLPEYVREEFETYLRCGVLEHGFLRVVCEQCRAERLVAFSCKKRGFCPSCGARRMAESARHLVEEVFGPRPVRQWVLSFPYPLRFLFASKPEAIGPVLVIVQRVIAGWLADQVGVDHASAQCGAVTLIQRFGSALNLNVHFHMLWLDGVYDANVEPPRRKPRLRRARAPTSAQLTQLANTIAHRVCRHLSRRGWLEGEDESVFLSDSAGSDDGMDGLRMSSMTYRIATGRDAGRKVVTLQTLPGDAGSLEGDAGKVGGFSLHAGVAAEAHESHKLEKLCRYITRPAISEQRLSISPQGRVRYQLKTPWRNGTTHVEWDAVDFIAKLAALVPPPRAHLTRFHGVFAPNANLRAQLTPSGRGKRPAGDAAPVDVSAHDEPRSPEQKRRAMSWAQRLKRVFSIDITTCAHCGCAVRIVASIEEPTAIRAILAHFEKHGALEQAHYRPAARAPPPAA*	common_virus_hmm	common_virus	C239	46031	4485661	4531692	GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote_CDS_0029	cloud	direct	high	1538	0.999	GCA_001700965.1_03933
GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote	cenote	CDS	4517403	4517669	GCA_001700965.1	CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965.1_CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965_1_1	GCA_001700965_1_1@C239	31743	32009	GCA_001700965_1_1_3803	GCA_001700965_1_1_3803	+	4541729	.	COG2183	Transcriptional accessory protein Tex/SPT6 [Transcription]. 	MSDIVKVKVLEVDVPRKRIALTRRLDDVPGEKPAREARGEQPRGGQDRGGGRGPGGPRGGRGPGGKPATASPPANNALADAFARARGR*	mmseqs_cdd	nonviral_gene	C239	46031	4485661	4531692	GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote_CDS_0030	cloud	direct	high	266	0.996	GCA_001700965.1_03934
GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote	cenote	CDS	4518166	4518909	GCA_001700965.1	CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965.1_CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965_1_1	GCA_001700965_1_1@C239	32506	33249	GCA_001700965_1_1_3804	GCA_001700965_1_1_3804	-	4541729	.	COG1704	Uncharacterized conserved protein [Function unknown]. 	MLIGLGVIVLIAGFIILIYNGLVMKRQRVNQAFADVDVQLKQRQNLIPNLVETVKGYAKHEQDTLQQVIAARNAAQSAHTPAEMSQAEGMLTASLGKLFALAEAYPDLKANTNFIQLQNELSAIEDKLAAARRFYNSAVQDYNTSREQFPGSIIAGMFNFEGRDFFDVGVEGREALSTPPEVKFPEAGADFPQRPQHGRDGGRGQQPGRDGRAADVEESAQCQRQAGQQVIPGAAKGDQVEPAGEQR*	mmseqs_cdd	nonviral_gene	C239	46031	4485661	4531692	GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote_CDS_0031	cloud	direct	high	743	0.999	GCA_001700965.1_03935
GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote	cenote	CDS	4519057	4519779	GCA_001700965.1	CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965.1_CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965_1_1	GCA_001700965_1_1@C239	33397	34119	GCA_001700965_1_1_3805	GCA_001700965_1_1_3805	+	4541729	.	cd02432	Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter. 	MAESAPESDNSYIHKEHHYFQRVNWLRAAVLGANDGILSTAGLLIGVASADATPGAIFTAGLAGLVAGAMSMAAGEYVSVSSQADLEKADLAIERAALHSHPDAELQELTEIYISRGLTPETARDVARQLTEHDALEAHARDELGMSEIVAAKPVQAAVSSALSFSVGAVLPIIAAVASPAGLITPVVAVVSLISLGILGALSARAGGASKSKAAARVVFWGVAAMLATGVIGHLFGTVV*	mmseqs_cdd	nonviral_gene	C239	46031	4485661	4531692	GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote_CDS_0032	cloud	direct	high	722	0.999	GCA_001700965.1_03936
GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote	cenote	CDS	4520104	4521645	GCA_001700965.1	CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965.1_CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965_1_1	GCA_001700965_1_1@C239	34444	35985	GCA_001700965_1_1_3806	GCA_001700965_1_1_3806	-	4541729	.	PFAM:PF04986.12	Putative-transposase	MPRLAATVSQLQDAVAHATSPAAHLPTARYAPHRPERTLLYSLVQAHWPDFLARREVEDRSLPEYVREEFETYLRCGVLEHGFLRVVCEQCRAERLVAFSCKKRGFCPSCGARRMAESARHLVEEVFGPRPVRQWVLSFPYPLRFLFASKPEAIGPVLVIVQRVIAGWLADQVGVDHASAQCGAVTLIQRFGSALNLNVHFHMLWLDGVYDANVEPPRRKPRLRRARAPTSAQLTQLANTIAHRVCRHLSRRGWLEGEDESVFLSDSAGSDDGMDGLRMSSMTYRIATGRDAGRKVVTLQTLPGDAGSLEGDAGKVGGFSLHAGVAAEAHESHKLEKLCRYITRPAISEQRLSISPQGRVRYQLKTPWRNGTTHVEWDAVDFIAELAALVPPPRAHLTRFHGVFAPNANLRAQLTPSGRGKRPAGDAAPVDVSAHDEPRSPEQKRRAMSWAQRLKRVFSIDITTCAHCGCAVRIVASIEEPTAIRAILAHFEKHGALEQAHYRPAARAPPPAA*	common_virus_hmm	common_virus	C239	46031	4485661	4531692	GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote_CDS_0033	cloud	direct	high	1541	0.999	GCA_001700965.1_03937
GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote	cenote	CDS	4521889	4523034	GCA_001700965.1	CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965.1_CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965_1_1	GCA_001700965_1_1@C239	36229	37374	GCA_001700965_1_1_3807	GCA_001700965_1_1_3807	-	4541729	.	PRK00013	chaperonin GroEL; Reviewed	MSGAGDEPVTRVGEQVHVLVGFGVRHEVALPLEHQHLSGEAAHLRAGIGDIAEPVRAGAHVQPRASFLRLHLARIADHVAGEACRQRVQRGIRFRIRYGLDVEGHGDGLCQDQLGRHRRQCRIATVLLRIRRTEIQCCEVGLSLEKATINDLGRAKRVVITKENSTIIDGAGDAERIQARIGQIKAQIEETSSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALIRAKAAIENLKGANEDQNHGIVIALRAMEAPLREIVTNAGEEPSVIVNEVKAGSGNFGYNAANGQFGDMVAFGILDPTKVTRTALQNAASIAGLMITTEAMVAEAPKKEEPAMPAGGGMGGMGGMDF*	mmseqs_cdd	nonviral_gene	C239	46031	4485661	4531692	GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote_CDS_0034	cloud	direct	high	1145	0.999	GCA_001700965.1_03938
GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote	cenote	CDS	4523144	4524409	GCA_001700965.1	CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965.1_CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965_1_1	GCA_001700965_1_1@C239	37484	38749	GCA_001700965_1_1_3808	GCA_001700965_1_1_3808	-	4541729	.	COG4097	Predicted ferric reductase  [Inorganic ion transport and metabolism]. 	MRLGSHSLIVPAVLASFALTASAVPGSTWPTTGMLSLGSGVAAVSLMALAAVLGARWKAVESLFGGLDRVYETHKWLGVWALVFASVHLVFKAGSPAWETAAILPLPGPVTRLVRQLSFVSLMLIVLLALNRKIPYRTWRWWHKLSGPLFLIVVAHWASFKSPIALASAAGAWLAVLSSLGVMGAAYKLLLYPLFSRHARYRLRAVSANGSAVHLQLVPEGPGIPFLPGQFAFVSFGHDGLREPHPFTIASAGDADGGIAFMVRSLGDYTERLVRDARPGMVAQVYAPFGRFEHRPTGRKEIWIAGGVGVTPFIAWLRDADASALDGVTFFHFFTPGRELPDAVDLAGMARARGVELIDIATGPSSAGFRQQFAQRVERAGASGVQISFCGPKGLLDQVRQLMRETGVAEDRLRHELFEFR*	mmseqs_cdd	nonviral_gene	C239	46031	4485661	4531692	GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote_CDS_0035	cloud	direct	high	1265	0.999	GCA_001700965.1_03939
GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote	cenote	CDS	4524442	4525068	GCA_001700965.1	CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965.1_CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965_1_1	GCA_001700965_1_1@C239	38782	39408	GCA_001700965_1_1_3809	GCA_001700965_1_1_3809	+	4541729	.	pfam18766	SWI2/SNF2 ATPase. A SWi2/SNF2 ATPase found in polyvalent proteins.	MIPSGVPTRVDRDQSGDLISPDRKDLDGQLFETFADCRWSIRATPVQANSRDDLREQLTAVEAGGVFFTTINKFAPERGQTSVPVLCERSNVIVIADEAHRTQYGFRADLDTKTGQTKYGLAKYMRDALPNAIYLGMTGTPVSLDDRDTEAVFGTYVDVYDMIAAQEDEAVVPVSYESRIIELRFNEAEKQALMRVGRESLRTGPNAT*	mmseqs_cdd	nonviral_gene	C239	46031	4485661	4531692	GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote_CDS_0036	cloud	direct	high	626	0.998	GCA_001700965.1_03940
GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote	cenote	CDS	4525120	4525953	GCA_001700965.1	CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965.1_CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965_1_1	GCA_001700965_1_1@C239	39460	40293	GCA_001700965_1_1_3810	GCA_001700965_1_1_3810	-	4541729	.	PFAM:PF01526.16	Tn3-transposase-DDE-domain-protein	MSDKYVALFSHFIPCGVHEGIYILDGLLANTSDIQPEIVHGDTQAQSYPVFGLAHMLGIQLMPRIRNIKDLTFFRPEPGRTYKNIQALFGDSIDWQLIATHLHDMLRVVISIRLGKITASSILRRLGTYSRKNKLYFAFRELGKAVRTLFLLRYIDDNEIRKTIHAATNKSEEYNGFVKWVFFGSQGIIAENVQHEQRKIIKYSQLVANMIILHNVERMSRTLAVMQKEGIELTPEILAGLSPYRTSHINRFGDYHLDLEREVAPLSYTAKVLEQAP*	common_virus_hmm	common_virus	C239	46031	4485661	4531692	GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote_CDS_0037	cloud	direct	high	833	0.999	GCA_001700965.1_03941
GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote	cenote	CDS	4525957	4528113	GCA_001700965.1	CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965.1_CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965_1_1	GCA_001700965_1_1@C239	40297	42453	GCA_001700965_1_1_3811	GCA_001700965_1_1_3811	-	4541729	.	PFAM:PF01526.16	Tn3-transposase-DDE-domain-protein	MATLHETAYPRLKPDPTAKELEEIYTPTAAEIAFAKQLTTQPGPQLAVLIHLKLFQRLGYFTVLAEVPERIRKHIAKAARLGRVLDTDQLERYDASGSQRRHMPQLRQFIGVHPLDKSGLAWLDTVATGAAQTKHTIPDIVNVLLEELVHHRYELPGFRTLELAAIGARERVNLGYYRSISHALTPATRTLIDELLRAPEGSRFTGWQSLKREPGRPTNKEVRFYLQHIRMLQQLAEQLPPIDVPVPKLKQFRAMARAYDASELAELAPDKRYALATIFIRAQHAKTLDDAAELFIKQVRGLENTAQQKLLAYQLEHAKRADFLIGQLKEILQAYQLDGSDSQRVDAIDNSLEAEVSTLLAECEEHMAYAGKNYLPFMLQPYGAVRPLLFNGLELMNLRATSHDAGMEPLIAAVLSLRNQRRELIEVASLGLDPEKDFDWMSKLWRQHVFGKRASAAGAGWMHRKYFELAVLVQVKDELKSGDLFIPSSERFDDYREQLVDEATLAQELEAYGQVSGLPTDAATFVAGLRAQLTDLADEVDERFPENVHADILEGRLVLRKGQRAEVSSAIATVDRLIAERLPESSIVDVLIDASQWLDLHRFFRPIAGTESQVEDLPRRVITTLFCYGCNLGPTQTARSIKGFSRRQVAWLNLKYVTEDVLEKAIVEVINTYNKFDLPGYWGSGKSASADGTKWSVYEDNLLSEYHIRYGGYGGIGY*	common_virus_hmm	common_virus	C239	46031	4485661	4531692	GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote_CDS_0038	cloud	direct	high	2156	1.0	GCA_001700965.1_03942
GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote	cenote	CDS	4528137	4529408	GCA_001700965.1	CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965.1_CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965_1_1	GCA_001700965_1_1@C239	42477	43748	GCA_001700965_1_1_3812	GCA_001700965_1_1_3812	-	4541729	.	PDB:3T79_A	DNA-recombinase	MTELDRYLDAATRQNTVRSYASALRHFEVEWQGHLPATPDSVARYLAAYAQTLAASTLRHRLAAIASWHRDHGFVDPTRSPLVRKVLKGIQTLHPGQVKQAAPLQIRRLVELDDWLAAAIAAAHARGDGAAALRHQRDRALVLLGFWRGFRGDELLRLDVAHLTLVPGQGMTCFLPRSKGDRQAAGVTYKVPALSRLCPVEATQVWLQAADLHEGPVFREVNQWGQVSAEGLHPNSLVRLLRELLTSAGFADAGLHSSHSLRRGFASWANDQGWDMKALMEYVGWRDVQSAMRYLDGRDPFARDRIEASLPSPTAPVPAMALPAPEGKPALQLRLRMVLTPFARTGRGAAKARGRIEEICLAPFQAVRLNTASSEYQLTVPTDPDRDLDEILATLLDDMHRMADTHQCFLEASLNTDDGRHWD*	common_virus_hmm	common_virus	C239	46031	4485661	4531692	GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote_CDS_0039	persistent	direct	high	1271	0.999	GCA_001700965.1_03943
GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote	cenote	CDS	4529405	4529818	GCA_001700965.1	CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965.1_CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965_1_1	GCA_001700965_1_1@C239	43745	44158	GCA_001700965_1_1_3813	GCA_001700965_1_1_3813	-	4541729	.	cd04785	Helix-Turn-Helix DNA binding domain of the CadR- and PbrR-like transcription regulators. Helix-turn-helix (HTH) CadR- and PbrR-like transcription regulators. CadR and PbrR regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which comprise a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.	MKISEAADASGCHLETIRYYERIGLLPRPGRSGNGYRVYGPADIERLRFIARGRDLGFSLEEVRSLLQLAGDEELSCGDVDRLARSHLTDVRARMADLERMATELERVIASCHGGQRAECTILSTLRQPVAVEATRQ*	mmseqs_cdd	nonviral_gene	C239	46031	4485661	4531692	GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote_CDS_0040	persistent	direct	high	413	0.998	GCA_001700965.1_03944
GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote	cenote	CDS	4529924	4530541	GCA_001700965.1	CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965.1_CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965_1_1	GCA_001700965_1_1@C239	44264	44881	GCA_001700965_1_1_3814	GCA_001700965_1_1_3814	+	4541729	.	TIGR01297	cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence. [Transport and binding proteins, Cations and iron carrying compounds]	MSDCGCHHEAKNAQERRVLWIALALNAAMAVIGGIAGWIAHSTGLLADALDMLSDATAYAIGLVAIGRTARFKANAAWVSGSVLLVLGVGVLVEVGRRVMYGAEPVSGWMIGTALLSLAVNMAVLRMLAPLKSGEVHLRATWLFTRADVVANVGVILAGLLVWWLASPYPDFVIGALIGLYVIKEAFEILGDARRAGADARKTAA*	mmseqs_cdd	nonviral_gene	C239	46031	4485661	4531692	GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote_CDS_0041	persistent	direct	high	617	0.998	GCA_001700965.1_03945
GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote	cenote	CDS	4531392	4531691	GCA_001700965.1	CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965.1_CP016756.1	GCA_001700965.1|CP016756.1	GCA_001700965_1_1	GCA_001700965_1_1@C239	45732	46031	GCA_001700965_1_1_3815	GCA_001700965_1_1_3815	+	4541729	.	COG1807	4-amino-4-deoxy-L-arabinose transferase or related glycosyltransferase of PMT family [Cell wall/membrane/envelope biogenesis]. 	MATSVLAIGASLGVRDFGPVDEPRFALVATQMVATGSSLFPRRGAELHPDKRLFMWISAALLSLTQNLRTAVLAPSLVSGVAYVWMAFHLGTRNGGRVR*	mmseqs_cdd	nonviral_gene	C239	46031	4485661	4531692	GCA_001700965.1|CP016756.1@region_4485662_4531692@tool_cenote_CDS_0042	cloud	direct	high	299	0.997	GCA_001700965.1_03946