core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	16187	16387	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	1	201	GCA_001715655_1_24_16	GCA_001715655_1_24_16	+	173147	.	.	hypothetical protein	MAWLKKGWYYILPILALVFTALSDQKIDRSLLLIVIGVLLLMVLMDISKYRMSQAKKKTPVDKKQK*	.	hypothetical_protein	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0001	persistent	direct	high	200	0.995	GCA_001715655.1_01239
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	16587	16895	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	401	709	GCA_001715655_1_24_17	GCA_001715655_1_24_17	-	173147	.	COG2314	Uncharacterized membrane protein YozV, TM2 domain [Function unknown]. 	MNNNLSIEEQLLVNSEVAKKGKNIVLAYVLAIFVGILGIHRFYLGRKGSAIAMLIIGLFSFGLITGVWVIVDLFLIPGIVKENNAVIEAELTNEIIASREQN*	mmseqs_cdd	nonviral_gene	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0002	persistent	direct	high	308	0.997	GCA_001715655.1_01240
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	17088	18233	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	902	2047	GCA_001715655_1_24_18	GCA_001715655_1_24_18	-	173147	.	.	hypothetical protein	MKLKILLLIFIVILAGCSQPETKEITSEKITNFKPGSSGNLFLFYPSDNRVSQLKTYVKEVDNAGEVINVFSIEDADFRRAEPFQNPLYPNTIYLSLFGEAKIENFFYEFDLDTKTFAKKKIDYFKEPLGVSNVFHYGKQLNFSTILSHETGEKNEKDGLFNVSISNIDSEKTVETPYGASPAYTPLLGFNNNVFYGANLTLNKKDEFTGKGIVSTNLETGEFKFLNPENDTTASYLPFYTNDDFMFFLSDSGVFYKYDKDMRVTHHKFLTSEQLDKGYSIDIENKPLFINKHEALYTVSHSKTALLLLIDIDTLSFKEIPIKGSYESIRLMSYDNTKDEIYILGEKGDSADLLTLDDITLHIENKFKVDYPHLLDFVIKY*	.	hypothetical_protein	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0003	persistent	direct	high	1145	0.999	GCA_001715655.1_01241
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	18481	18681	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	2295	2495	GCA_001715655_1_24_19	GCA_001715655_1_24_19	-	173147	.	.	hypothetical protein	MIKGHFLIGIYMLKWFISATNIRLVLLLQNWNRTNLWKGASKIKQYKVTSKLGKNATTAKRKSAVA*	.	hypothetical_protein	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0004	.	unmatched_CDS	none	0	0	.
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	19368	20720	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	3182	4534	GCA_001715655_1_24_20	GCA_001715655_1_24_20	-	173147	.	CDD:cd06523	GH25_PlyB-like-endolysin	MTQQLTMKKENNMTKTIKLITAGVLAAGLFLGSIVTVSANDIKNPKIADVSEWQGNINWSLAKDDLNMAIIRAQYGTNYKDKYLDRNQSEAIKHDVPFGTYAYARYINAADAKTEARALYNRTSDKAKFYVIDVEEFTVTSGTMREATNAFVKELRSLTNKKIGLYVGHHTYTQFNLDTSKFDFVWIPAYRSWEPDYKHDIWQYTDGGQVKGIVGGVDLNKLSNADKPLSYYVGKTEANEQANQYTAGGFKVNQQVKLKSTATKYHTGQKIPDSVKNKKYKVLETKVVAQSHSKQAVLLSGINSLVLAQDVAKVTTAATGSYYNANPKRVTLTKASTLRKINAQNGKDWDKQSNKVANFKKGTEFVIKSIKKSSAGTPRLVTQSGHLLTANKSYVKQVSATPTKQYHTVKSGDTVSAIATKYKTTTSKIKSLNKLSNVNKIYVGQKLQVK*	common_virus_hmm	common_virus	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0005	cloud	direct	moderate	1317	0.973	GCA_001715655.1_01242
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	20686	20895	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	4500	4709	GCA_001715655_1_24_21	GCA_001715655_1_24_21	-	173147	.	PFAM:PF04531.12	Bacteriophage-holin	MKVNWHSKILWTSLTALFVVFIQQVGAVFGWSFDSEKAQQLTGIINTVLTILATLGIVYDTTTNDEKGE*	common_virus_hmm	common_virus	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0006	cloud	direct	high	209	0.995	GCA_001715655.1_01243
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	20892	21224	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	4706	5038	GCA_001715655_1_24_22	GCA_001715655_1_24_22	-	173147	.	.	hypothetical protein	MDLNEYLKGIASLVSSIIVVGGALIWIYKKLVSDPDKRIAEQIQRENSESLKKTVQPLTQSIELLNNNLKQSEKDREQLNKKVNLHDNVLNNHETRITVLEEFKKGVTDK*	.	hypothetical_protein	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0007	cloud	direct	high	332	0.997	GCA_001715655.1_01244
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	21225	21374	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	5039	5188	GCA_001715655_1_24_23	GCA_001715655_1_24_23	-	173147	.	2XF5_B	GP23.1	MMTFLLSMYKQKRIDNEYLKKVVKNGHITAEQYNNITGIDYTKEQAGDD*	hhsuite_tools	hypothetical_protein	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0008	cloud	direct	high	149	0.993	GCA_001715655.1_01245
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	21371	21649	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	5185	5463	GCA_001715655_1_24_24	GCA_001715655_1_24_24	-	173147	.	pfam11192	Protein of unknown function (DUF2977). This family of proteins has no known function.	MQVLLDDKKAILAYAVVGEIDGAVQIDDTQIPINFEDDFKPLYFVLKNDEVIKNEDFEKNDEVIGDDEVPTIERISQLENLVLQLLSGGDEL*	mmseqs_cdd	common_virus	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0009	cloud	direct	high	278	0.996	GCA_001715655.1_01246
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	21651	23276	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	5465	7090	GCA_001715655_1_24_25	GCA_001715655_1_24_25	-	173147	.	PDB:4DIV_C	Distal-Tail-protein	MSITKIAKMTTEITADYQKLSDLNVAFYNQDINTSILQFNVTRNDAPVPLGKTNVDGYIVLLHEDGSRIQDNLVIVDEMEGAIQYTIPREFLKHTGKVLGQVYVAVKGVDDTAVMRQFSFDIEQDLMTAFSSTKKLEYIKTFDDLQTKIKQRVEAIEEAISNGEDYVAQMIETLDTGKKEIAATVVKANADINKVATGATKNITDTSNTAVATVNAKGDAVLKTFAENGQTSKITSDNGTSLTLNNYDLLNIEDIKNFDGYVTKATNSPTVVNDGYLKRKYRTGYIEVAYSPYNANVTYRNAYHFGTKVWFGWEKIISQSDTSTYQKQKITNDAGDAKVYLSGTTTDVYAELLKLEKGFYSAYIGSTAANSAESTVRGYVFVQEKGRWISVSGVGSNNKTYSLHFADGTWTGWESAVKAQELTAIKPVTLWQGSANSVSDTAYNLTAAINTFRVAMVTYKTASGNNKVQTFSVATDSNRIVISETNIADADASSALIYECRIDTSASTSFKIIADNIFNIKTSVATTDANTHTILKIEGVM*	hallmark_hmm	common_virus	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0010	cloud	direct	high	1625	0.999	GCA_001715655.1_01247
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	23291	25909	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	7105	9723	GCA_001715655_1_24_26	GCA_001715655_1_24_26	-	173147	.	PFAM:PF11962.7	Peptidase_G2	MVELDKYLPVNREEAFRNGVNKNFAKIEQGFSQRDAVMANHQTSQKRAHDSGQITHDGWTIEKEMKYRAAQVKNLVVGANGDGIAETKDARVDLYAEIHATLSERLLSDFKRLTKRLDRVVHVDDFGAVADGKSDSTQAFKDALSGGNVRVHIGAGTYIVNESVKMPSYSQLIGQGQGISEIKLSDDAPAKELVIVNADFKTRKNTHIHIRDLTVNGNKKRQGGVLAPAGGSKSSGIRLAGVRYGYIENVDTKATLLHGIDITNATVDEEYPYTGDGTRGNDTGSQYIWIDNCTATDFGDDGITTHHSDYLQITNCYSHHPTLNDDGTGRGNNNGFEIDDGSRYVFLANNKSEECFGGLEIKGHADISAAQGIFVNGHTSIRDNRSYNFRHIGHHSATDEESKTAYDIVAKNIVSLYPYENNVYQGSKSRALVVSAYKNVVIDGFTAIGDKTHSDDQPVIAFQYRSENITFTNVNIRGFVNASEDISIIGGGNRPAGVTLSNINIYKSAKIGISNGSSIYDTKISGASLVGNGGLAIVSYNNTLQIIAVTQSGYETAAKIAGRDYAYMPTVVKGGFSAASTSAGSLHETAAVIASTGASYAHDTKTWLLGVSDGANAYGSRAGIINSLNSETEKDGYAQLVFNSNGVKAPGNYQAVGGYGEGEASTSNVKINLNTFNGNIKSAGTVTGSSSFADYGEYFESLSGESIPNGTVVALSGRYIVPAEKGDKPLGVISGTAGIVLGENTYHHKGKYLKDDFGVTLYEYRDIVENHTDENGDAFENKVTRCMPVENPDYDSDLKESYASRSERQEWNVVGLLGQVYVRIDNTVESGDSLDFEKGRATKSDNGHWQVMSITTPFELSKGYGVALVIVK*	common_virus_hmm	common_virus	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0011	cloud	direct	high	2618	1.0	GCA_001715655.1_01248
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	25930	28677	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	9744	12491	GCA_001715655_1_24_27	GCA_001715655_1_24_27	-	173147	.	PDB:3GS9_A	tail-protein	MSVYFFDNKQQLIKIKNSRTLLQCLQEKEITSDKSDLMKDILTVSCLHDAELEQCHFMAVRESKGIYSLYKILEEEIDSEIMNFKGVNFGAEELNNYVVSDARPVKKTITDIVKQILTYTDDEWLMTGGVDKIGSANFYYTSVKEALKIVQQLGCELLFFCDIDGSGISSKWVEVRERIGKESDDRFEVGSTAIKVVKTKDRTNIVTSLVGRGKGEEVGDGYGRRLQFDTVEWTKPVPKPKGQTFIEIKELTEQYGIPTKTGKMRKREQVVIFDDIEDKNELLNATYQTLLDNSRPLIQFSSEVIGASSIGDIVTIHDYDKNYHYQTRVFAIKNDILNNKIESSLGDNLKGSSASNQLSKASSGISELKSMKMNFYDSTEISKWQSDIIRGAKGGSVLLMSPWDTNKGKSREPYQMVIMNKGSLKESNHFLVMNSEGIGFINGDFDKDKFETAWTIDGTFNAKFIRAGVLSGILIKGNIIKSSDEGDFQIVLDGGELTFEKKYDSEDIDDQHGHPMLTMKALYTDDKLNGISMVQIPNYSFGINSGGLMVSKPVIEIPKESTIDSRKLNLFGEVRVVGDFYVNGVKIDSNGGSGGSGGGSGGWNGQYPPEITSDVDKRAWAIWSTLRGHDYSKAASAAILGNIQGESGPQMNPDTEQVGGPAYGLVQWDGSAYPLVGQPTYNGREYVQRLMKAANIADDYRTIGSQVNLIEWSMKNGQWIGAVEPKTVSGFKASTSPRTAARAFLYNFERPATGHPEREDYAQTWYDKFKDLKQPGGKYGMPVGPGYQITSWFGNRDNPKDPGNLETHKGMDFSDKVGSPIFAVENGEVIASLPTASSGGFGEYIVIKHSDGNFTGYAHMTLRMASQGAKVSKGQQIGTMGSTGESTGSHLHFSVGDGLFGNYQDPAPYLGLKRP*	common_virus_hmm	common_virus	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0012	cloud	direct	high	2747	1.0	GCA_001715655.1_01249
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	28674	29441	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	12488	13255	GCA_001715655_1_24_28	GCA_001715655_1_24_28	-	173147	.	PDB:4DIV_S	Receptor-binding-protein	MYYFKDTKKYPLETFKFIPTSAMFYDGLLLEDLIEGYTTLKVEGREMTSLTIDSTAVKVGAIVSNQKINTRSITVTYQLKNKSSQAIQEDFKKMMAHLYREEDVAIYFEDEPTTLYYGRYQSAESVDGSSNSIISSFTIFCSDPYKYGSQIVSAGVINTVLRQPVMPMKIEATVTKSGPMKIVKGSQSISMSRANFKVGDNVVIDFVVGKVFVNNLNRTRFLDLDSDFSNFKLNSNDKITCSSANLKIYYRSVDL*	hallmark_hmm	common_virus	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0013	cloud	direct	high	767	0.999	GCA_001715655.1_01250
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	29453	31477	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	13267	15291	GCA_001715655_1_24_29	GCA_001715655_1_24_29	-	173147	.	Uniprot:T2PM72_GARVA	tail-tape-measure-protein-	METHKIEAILSADDRNFSSGMSRAEKAAGAVGNGADKAGKATGRMGVGLGTMLKGAGVFAIVSAGINGVKGATSGAIDRFDTLNNSTRSFENMGFKTKEITGTMDALKGSIQGLPTPLDGAIKNVQLLAASTGNLGKSQEVFAAMNNAILGFGGTTDQVQNTVTQLSQALSNGKVDAETWNSMINGGMGPTLNALAKTFDMTTGEMKAALSDGTISVEQFQDSLIQLNEKGGGGLKPLSKIAQDAMGGIKTGISNAKTAVVRGLATVITAINDNLQKMNLGSIGEIIGKIGSSFEGAMTTFAAYIPVLMGKIGAFVSFFKAHSETIIPIIKVVVATLLTFGTLVSVIRAVQNAIVAFNLVMTVMTGPIGAVILAIGVLVAIGMYLYNNWSSIGPLLSGIWQTFKDTTVAIFNSVVEFFKKWGPMMLIALGGPVVWIVALIVKNWDKIKAVTSTVWNGIKDFFIGLWDGIKSIFSNVLNWVVRFVSSQFYAAVGLVKSIWGGISGFFSGMWDKVVGLFQGGVNNVKGWIDKLLGVFNKIKEFSLADAGRAIIDGFVNGLKAAWEAGKKFVSGIGDWIKDHKGPISYDKKLLIENGQSIMFGLDKGLQGGFGDVMGNVNGMAKSIGSSFTADANQANKTAVTPLDLSVKIGKQDFKYFVEDISQQMGGDAQINKQF*	hallmark_hmm	common_virus	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0014	cloud	direct	high	2024	1.0	GCA_001715655.1_01251
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	31493	31753	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	15307	15567	GCA_001715655_1_24_30	GCA_001715655_1_24_30	-	173147	.	PFAM:PF12363.7	tail-assembly-chaperone	MSLYEYTMKMTAFKLKLVDQEYILHKTAWLAQQVKATKKVGKDIKPYYQSFDKFFDYAKQERSALGETNEELKDSNLSNLLRKANK*	phrogs_hmm	hypothetical_protein	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0015	cloud	direct	high	260	0.996	GCA_001715655.1_01252
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	31840	32187	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	15654	16001	GCA_001715655_1_24_31	GCA_001715655_1_24_31	-	173147	.	PFAM:PF12363.7	tail-assembly-chaperone-protein	MELKINGEIKNFIFGIKFVRELDKKFFIENNGMKFGTGLSTKLIEIHSGSIVALADVLYCATSTEPKRPSLEDVEQYLETCEDIEKVFDDTLAEIESNNAGKLIARDTKKAMKAK*	hallmark_hmm	common_virus	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0016	persistent	direct	high	347	0.997	GCA_001715655.1_01253
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	32228	32737	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	16042	16551	GCA_001715655_1_24_32	GCA_001715655_1_24_32	-	173147	.	PDB:5A21_H	major-tail-protein	MAEAKKGIDVILLYRVLKNEAKEAAWKMAFQTEHSNGKSRDADSTATKDGPIQNMAAIEYDFSATSIVAVGDKHIDELDDAFDNSELIEIWEIDKAEKGTDTDVDKYKATYFQGYVSSFSKTPNSEDALELEIEFAINGIGQKGYATLTTNQAEVVSYVFKDTVKVEGS*	hallmark_hmm	common_virus	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0017	cloud	direct	high	509	0.998	GCA_001715655.1_01254
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	32750	33139	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	16564	16953	GCA_001715655_1_24_33	GCA_001715655_1_24_33	-	173147	.	PDB:4ACV_B	Antigen-protein	MIKTRDQSIFDEVFKRCQSLGYVTYDYKPMNEVGYPFVEIEGTTTNHVANKTDVKGSIELTLSVWGLQQKRKQVSDMASNILYQSSLIQATDGYYWSLGYNQSTIQLMDDTTTNTPLKRAIITLTFTVR*	common_virus_hmm	common_virus	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0018	cloud	direct	high	389	0.997	GCA_001715655.1_01255
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	33145	33531	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	16959	17345	GCA_001715655_1_24_34	GCA_001715655_1_24_34	-	173147	.	PFAM:PF04883.11	putative-tail-component	MSRAFKITGTKELQKALRAKTSLQDVKNVVKKHTVGLEAGMKRESQNVLTGHYEGGKFVKPTGQTKRSITSNFSENGMTGRVGPTTDYSEYLFYGTRFMAKRDFMSKPYKRQKTIFIKDLSALLKKVK*	hallmark_hmm	common_virus	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0019	cloud	direct	high	386	0.997	GCA_001715655.1_01256
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	33524	33838	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	17338	17652	GCA_001715655_1_24_35	GCA_001715655_1_24_35	-	173147	.	PDB:5A21_F	head-closure-knob	MRYNDEVTFVKKGKQQYDPDKGEWSDGAKTETVANVNVTDIGTDRSLVIFGNIRQGAKVIRTLPLFDVPEFDYIVIEGLSYQQVTLRSPLFRNSIILEEVTVDE*	hallmark_hmm	common_virus	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0020	cloud	direct	high	314	0.997	GCA_001715655.1_01257
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	33835	34182	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	17649	17996	GCA_001715655_1_24_36	GCA_001715655_1_24_36	-	173147	.	CDD:cd08055	Head-Tail-Connector-Protein	MSVLEDVKKMLGGNVDEQLEVINRRTTERVVSLIGLEDDNKKYVEIVAAVDTIIYEVSLKRFNRIGNEGMQSYSQEGLSISFPDSDFDEYQDELSRWRKKISDETDGKFGRVSFV*	hallmark_hmm	common_virus	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0021	cloud	direct	high	347	0.997	GCA_001715655.1_01258
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	34187	34405	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	18001	18219	GCA_001715655_1_24_37	GCA_001715655_1_24_37	-	173147	.	PFAM:PF16323.4	major-tail-protein	MGQSDTLTATVVPENAEDKTVTFTSGNDKVATVTPKQGKVTAVAKGATEIEGVTANGIVVKLPVTVTEPAGG*	phrogs_hmm	hypothetical_protein	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0022	cloud	direct	high	218	0.995	GCA_001715655.1_01259
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	34453	35265	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	18267	19079	GCA_001715655_1_24_38	GCA_001715655_1_24_38	-	173147	.	PDB:4AN5_F	Major-Capsid-Protein	MTTKLVDLVNPEVMAPIVSYELKNALRFTPLAQVDNTLTGTPGDKLTFPAFTYIGDATDIAEGEAIPLDKIGTTTKEVKVKKAAKGTEITDEAALSGYGDPVGESNKQLGLSLANKVDNDLLTAAKETTQKATIEATVEGLSTALDVFNDEDGQGYVLIVSPLDASKLRLSAGKEWLNGTELGAERLISGSYGSLLGAEVVRSRKLAEGEALLFKVVANQPALKLVSKRAVQVETDRDITRKVTIITADNHYAAYLYDETKVIDLTIAKK*	hallmark_hmm	common_virus	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0023	cloud	direct	high	812	0.999	GCA_001715655.1_01260
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	35267	35968	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	19081	19782	GCA_001715655_1_24_39	GCA_001715655_1_24_39	-	173147	.	PDB:6B0X_d	Major-Capsid-Protein	MEQDNLLKLNIQYFAEEGDGGSQGGSDQTNGDETGTGEDGATNGATDDKGSDTGTDDNTAKVLEKLKARIGKEQAEKNETKTQLEQAMARIQELEQGKKGVKEKSAEEKLAEAQQQKDDEIASLQKQIKLSSMTQEADEVLKEGGLVVPKDVLKLIVSDDETKTFDNVKTFLTFLESQQQAWETKRNTGTTPKKTGGTQGTVTTEQFNAMSYLEKAKLASEQPENFKKITGGH*	hallmark_hmm	common_virus	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0024	cloud	direct	high	701	0.999	GCA_001715655.1_01261
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	36057	36269	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	19871	20083	GCA_001715655_1_24_40	GCA_001715655_1_24_40	-	173147	.	.	hypothetical protein	MNLVKIDKGLHVNGTRIEHFSDVNIASNMDGLTKFTISFYGTLDGVDNIEPSLEFKSSKNGIGMSKTNEG*	.	hypothetical_protein	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0025	cloud	direct	high	212	0.995	GCA_001715655.1_01262
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	36272	37297	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	20086	21111	GCA_001715655_1_24_41	GCA_001715655_1_24_41	-	173147	.	PFAM:PF06152.10	minor-capsid-protein	MKSSSYWKKREEKAIQERIDFDTEKALKIKRMLDQTMKDIEQDILADMSRYSLGTSTDFPEVMQRVSDFEVKEFSSIAKQMVKDKDFSKQANSLLKVYNLKMRINRLEYIKSKIGLATVSLGEDLIKYFDEVFTEAVINEFKRDAGILNNATGSSVSYLKQARRIVDDSSFVNAYSRNVWSNTQLLQLDIEKLLFKHLATGSHSRILAADLRKSFDVSKYQAERLMRTEVANAQINAQKDSYSTNEIDMYEFIAEPSACKLCKPLDGKKFKVKDMEKGKNAPVMHPNCRCSTAPYVDDKAFYDDLLNRGVINEQEYKEAFETTKAANDAFDELLNKRKGRR*	hallmark_hmm	common_virus	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0026	cloud	direct	high	1025	0.999	GCA_001715655.1_01263
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	37297	38664	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	21111	22478	GCA_001715655_1_24_42	GCA_001715655_1_24_42	-	173147	.	PDB:5A20_A	Portal-Protein	MEYMKKGFEPFEFPRDEEITGEVIQEYIDKHTAALRRLKVLNDMYKGNAAIFERDNKALHKPDNRIDINFPKYITDTFCGFFNGIPVKKKHEDETFSEAITKFDNMQDMQDEDAELAKLVSIFGYAFELLYQDENTQTNVVSVSPLDMFIVYDESIASKPLFAVRYGLNSRTDAVEGVLYTEEAFTQFKADGDNLVFGETKENIYDGLPVIEYIFNKERIGIFETVKSMIDAHDKALSEKTNDVDYFSDSYLKILGADLDDETLVAIRDNRIINLPNAQTGVVVEFLDKPDSDAQTENLLNRLKEHIFQIAMTANISDENFGSSSGVALAYKLQPMNNLAAAFERKFQAGMNKRYKLFASLLTNVPDKLSDAWSDIEYKFTRNMPKNILEEAQTAVQLATIASKETALSVLSVVPDVRAEIDRMDSERKDSINLLDYQQEVPEKETVEIVEKEDS*	hallmark_hmm	common_virus	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0027	cloud	direct	high	1367	0.999	GCA_001715655.1_01264
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	38665	39948	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	22479	23762	GCA_001715655_1_24_43	GCA_001715655_1_24_43	-	173147	.	PFAM:PF17288.1	Terminase_3C	MMMVKKLSELIPKPFHSVWSATLSEQILNIVCKGGRGSGKSSDIAHVITQLLMRYAVNAVGIRYVDNTLEQSLYEQMKWAIEQQGVTHLFKFNKSPLRITYIPRGNYMIFRGAQNPERIKSLKDSKFPFAIGWIEELAEFKNEEEVTTITNSLLRGELGNGLFYKFFYSYNPPKRKQSWVNKKYETSFQPENTFVHHSTYKDNPFIAKEFLKEVEAARERNPRRAEWEYDGKAIGSGVVPFDNLKVVAGSITDDMTANFDNVRNAVDFGYATDPLAFVRWHYDKKHNCIYAIDEYFGQKISNRQFAKWAQSKGYQSDEIYADSAEPKSIAELRQEHSMPRVIGVKKGPDSVEYGEEWLDDLDAIYIDPIRTPNIAREFENIDYQTDKDGNPKPRLEDKDNHTIDATRYAFSRDMLSGNKIKLFKGGL*	hallmark_hmm	common_virus	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0028	cloud	direct	high	1283	0.999	GCA_001715655.1_01265
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	39935	40387	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	23749	24201	GCA_001715655_1_24_44	GCA_001715655_1_24_44	-	173147	.	PFAM:PF03592.15	Terminase-small-subunit	MRKLSLKQQIFADEYIITGNATKSAIKAGYSEKYANTNASKLLQNTTIKAYIEKRLAELKKERTLTMEEALELTSSIARGEPQRFVTRSKDPKTGDVLEEEVNEFSAGFKERNQALEHFYKINAAFIDKQQVELSEVPTFIDDISGDDDG*	hallmark_hmm	common_virus	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0029	cloud	direct	high	452	0.998	GCA_001715655.1_01266
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	40417	40686	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	24231	24500	GCA_001715655_1_24_45	GCA_001715655_1_24_45	-	173147	.	.	hypothetical protein	MNKTSYMQIDLFELGKQLEAGNAENLFMESGDSLICCAGCKVSINSIANNKWFLRCEQEERSEAVKNITVTLDSKELGAVCGYRPEVSE*	.	hypothetical_protein	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0030	cloud	direct	high	269	0.996	GCA_001715655.1_01267
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	40742	41089	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	24556	24903	GCA_001715655_1_24_46	GCA_001715655_1_24_46	-	173147	.	pfam19791	Family of unknown function (DUF6275). This family of proteins is functionally uncharacterized. This family of proteins is found in Firmicute bacteria and their phage. Proteins in this family are approximately 90 amino acids in length.	MVEQRLPNPCVTGSSPVISVEKIKGVIQMDNEQFVNYCKELVYKYTKEKLGTGIAFTKDDVYVVWLSKTLQNNKALLSTNVSDGMYYEVTYNGDKQEAYFDAYKKQENIKYDLAN*	mmseqs_cdd	nonviral_gene	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0031	cloud	direct	moderate	264	0.759	GCA_001715655.1_01268
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	41534	42022	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	25348	25836	GCA_001715655_1_24_47	GCA_001715655_1_24_47	-	173147	.	TIGR01637	phage transcriptional regulator, ArpU family. This model represents a family of phage proteins, including ArpU, called a putative autolysin regulatory protein. ArpU was described as a regulator of cellular muramidase-2 of Enterococcus hirae but appears to have been cloned from a prophage. This family appears related to the RinA family of bacteriophage transcriptional activators and to some sporulation-specific sigma factors. We propose that this is a phage transcriptional activator family. [Mobile and extrachromosomal element functions, Prophage functions, Regulatory functions, DNA interactions]	MLEQIELIDKIQEYRDTQPSDLNLKLTEESIVLLITAFNKEVLKAGGRIEPKVTPGYSIMPPSFSNEFHSSTESAALDNIENFEMVDYFFNKIQMGQESIDCVLNSDRKSRRKRIFAMRFIQGMDRPSIMEELAIETTVYHEDMAMAITQFACALGIEVKKS*	mmseqs_cdd	common_virus	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0032	cloud	direct	high	488	0.998	GCA_001715655.1_01270
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	42022	42210	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	25836	26024	GCA_001715655_1_24_48	GCA_001715655_1_24_48	-	173147	.	.	hypothetical protein	MRGVAVFTFKDMSQITLDIEDTEGCLFALGGLTMIVVNETRSISYNTSDIAQVEINDCGEDE*	.	hypothetical_protein	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0033	cloud	direct	high	188	0.995	GCA_001715655.1_01271
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	42207	43130	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	26021	26944	GCA_001715655_1_24_49	GCA_001715655_1_24_49	-	173147	.	PF07659.11	Nucleotide modification associated domain 1	MIYEGKEYKEVTDGSAEIGDLIHVTNTSGAECDVWCFSNDDNFETPCVGGALPGSYYCLDNEFDDYKRYRYLKDVEETPVKFKSGDRVRLTEFELNGQINFGNFNGYVDGEKFDGDYKVKFDDGSFVFFPQSSLELIKSYTIGQLKACEDFKKMIDELKAIGPLRNDVGVTPTNAVPKKVLKSPLKKEQIIPLTNPKKEHELINQTSKNIKQTDTVNSPSLSENINDLFAEIKNIIVYKNENYGDSFSKQYKKYGIVSVEMRLNDKFMRLEQLVKGEKDKVGESIEDTLKDIIGYATLALIELKDKG*	hhsuite_tools	hypothetical_protein	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0034	cloud	direct	high	923	0.999	GCA_001715655.1_01272
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	43127	43612	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	26941	27426	GCA_001715655_1_24_50	GCA_001715655_1_24_50	-	173147	.	.	hypothetical protein	MTLSEDKAKKTALILKINNLIDKHRRENRRKVFGTEETVEVGVKLACGCDTCSEIEKLGNELSELRTRKEEDRIVKKSYTYTVSKKGEKTKIYKTIKSLSKHLDFEIGMIESRFRRCVNNEVEVNDFVIKRKVIAKSYKYKKKAKESDLLRSSILEKEAYL*	.	hypothetical_protein	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0035	cloud	direct	high	485	0.998	GCA_001715655.1_01273
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	43624	44292	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	27438	28106	GCA_001715655_1_24_51	GCA_001715655_1_24_51	-	173147	.	PFAM:PF16784.4	Putative-HNHc-nuclease	MHKLAKIHRFKHHEGQTLIYATIDELVSEDKFNQFRNANTGYLEVDIDFKDNRNISVEQRKKIYALLRDISRYNGHGVSRNKETLKNDYIADKRIEPFSLSDTSVSNAREFISYLIELCFLYDIPFKNKGIHMTDDINRYLYLCLKFRKCAITGRPGEVHHIDTIGAGRDRRHVDHSQHRLVCLSREMHIKAHTMGWEEFAALHHIDGIRLTAEQVKEIKYK*	common_virus_hmm	common_virus	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0036	cloud	direct	high	668	0.999	GCA_001715655.1_01274
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	44261	44503	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	28075	28317	GCA_001715655_1_24_52	GCA_001715655_1_24_52	-	173147	.	.	hypothetical protein	MRYMLRNNKKMEFIKQLADARKRGHKVIKIKTETKTRGSAERDAYSYKRYKKHETSVDLIYVALIEMSDKHAQTSKNTQV*	.	hypothetical_protein	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0037	cloud	direct	high	242	0.996	GCA_001715655.1_01275
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	44504	44917	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	28318	28731	GCA_001715655_1_24_53	GCA_001715655_1_24_53	-	173147	.	PFAM:PF05866.10	Endodeoxyribonuclease-Rus	MKLTFDIEPVAQGRPRFSSFGKHMRAYDPPPSAMFKGQLKQMVMPMLPTDFVPYDTAIKVDIAFYRQDKKRLSKSEKELKEKGKYRPVTRPDVDNYAKGVLDALSGIVYTDDNIIVDLHVSKHYSDEPRIEFEIEVI*	common_virus_hmm	common_virus	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0038	cloud	direct	high	413	0.998	GCA_001715655.1_01276
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	44927	45133	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	28741	28947	GCA_001715655_1_24_54	GCA_001715655_1_24_54	-	173147	.	.	hypothetical protein	MREANRLAAIQKITKEVGVPTSIREYAYDNDKFNFWVGNQELYGTVYHGELKIEWSKTVGGQKQLTLF*	.	hypothetical_protein	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0039	cloud	direct	high	206	0.995	GCA_001715655.1_01277
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	45135	45614	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	28949	29428	GCA_001715655_1_24_55	GCA_001715655_1_24_55	-	173147	.	PDB:1Z9F_A	Single-stranded-DNA-binding-protein	MNKTMLTGRLVKDVDLKYTQGGSAIATATVAVKRGYKNKEGEYESDFPRIKAFGKTAEFFANYFKKGDVVEICGSIQTGKYEDSDGKTIYTTDIVADGYGGVGFALKQSHDNAQQTQQQNGNQYNQNSQSGSQGQTSNFSNPFASGGQSYNIDDKDLPF*	common_virus_hmm	common_virus	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0040	cloud	direct	high	479	0.998	GCA_001715655.1_01278
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	45615	46058	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	29429	29872	GCA_001715655_1_24_56	GCA_001715655_1_24_56	-	173147	.	TIGR01671	phage uncharacterized protein TIGR01671. This model represents an uncharacterized, well-conserved family of proteins found in bacteriophage and prophage regions of Gram-positive bacteria. [Mobile and extrachromosomal element functions, Prophage functions, Hypothetical proteins, Conserved]	MREMFFRAISKKTGEFVYGVPAPNSFGKYIFMVCLTLDDTCAYPMSKLPDFCEEIIPETLGEYSGVRDGTGEFIFEGDSVEFCDFDSLRTGGNTSDKTRKAKVVFIQGGYFVKDGDYEALLYDALINDSDLTIIGNIYQNKDLLEDK*	mmseqs_cdd	common_virus	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0041	cloud	direct	high	443	0.998	GCA_001715655.1_01279
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	46055	46237	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	29869	30051	GCA_001715655_1_24_57	GCA_001715655_1_24_57	-	173147	.	PFAM:PF06289.10	flagellar-protein	MKFIKVVGTPPIYIAVDKITVVYHSKNSGRTRIKFNSNDNYVLVSETPERIMQMIKDVTE*	phrogs_hmm	hypothetical_protein	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0042	cloud	direct	high	182	0.995	GCA_001715655.1_01280
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	46234	46398	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	30048	30212	GCA_001715655_1_24_58	GCA_001715655_1_24_58	-	173147	.	.	hypothetical protein	MDIEIFDSLNQQGKLNVCRDLNSFVTYNGISKDTIIHIFKWLYSVSVEETEVTE*	.	hypothetical_protein	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0043	cloud	direct	high	164	0.994	GCA_001715655.1_01281
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	46388	46564	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	30202	30378	GCA_001715655_1_24_59	GCA_001715655_1_24_59	-	173147	.	.	hypothetical protein	MILCKFCYTDITKEEGYVSCYAQRELITQSASEESVVTDKDVEIFSKYAKVEVTDDGH*	.	hypothetical_protein	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0044	cloud	direct	high	176	0.994	GCA_001715655.1_01282
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	46561	46767	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	30375	30581	GCA_001715655_1_24_60	GCA_001715655_1_24_60	-	173147	.	.	hypothetical protein	MAFNYIGGAIAPHATINWLEKGVAKFKTVCYDEQEVYEATKAFVNQESSMNALADDFDVERYEKESAE*	.	hypothetical_protein	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0045	cloud	direct	high	206	0.995	GCA_001715655.1_01283
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	46789	47511	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	30603	31325	GCA_001715655_1_24_61	GCA_001715655_1_24_61	-	173147	.	PDB:4M4W_K	Replicative-helicase	MTHSLSDEELAEVRAQVERENNQFRIRAIEAENKKKQEAIFKGSYISERLKEATFDNYVSENKAQEKIRLTCKRYVEIFDKKKPMNLFLTGNYGTGKSHLAAAIHQELSSKKKMNNETLVDQYEYKSLFINLPDLVDELTSGYADNSRREKFESIKNVDLLIIDDFGAEKKDNERGSISSDLLMIFKNRDESKHTVITTNLKPKEILQRYGKRLAEVVLNDRVTTTLVFDWESERNINTW*	rep_hall_hmm	common_virus	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0046	cloud	direct	high	722	0.999	GCA_001715655.1_01284
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	47492	48277	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	31306	32091	GCA_001715655_1_24_62	GCA_001715655_1_24_62	-	173147	.	PFAM:PF09681.9	phage-replisome-organiser	MFSKDITTSDIFVDMPMSSQLLYFHLGMEADDEGFIGNAKMLSRAYGSNNDDLTLLKAKGFIIMFDSGVSVVKDWNLNNRIRKDRIKETIYRSEKSLLTVDSLGVYQVGNQMTTSCQPIDNQMSAQYRLGKVRLVEVSKDIVPQSETVSPYKIIIDYLNDKTDKKFRASADKTKRFIDARLKDGFTVDDFKKVIDNKCFEWMIPGKQINGTPASNYLRPETLFGTKFESYLNQGGGESAIYSEDVNKFSNAPVTDDDTLPF*	rep_hall_hmm	common_virus	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0047	cloud	direct	high	785	0.999	GCA_001715655.1_01285
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	48294	48917	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	32108	32731	GCA_001715655_1_24_63	GCA_001715655_1_24_63	-	173147	.	pfam04404	ERF superfamily. The DNA single-strand annealing proteins (SSAPs), such as RecT, Red-beta, ERF and Rad52, function in RecA-dependent and RecA-independent DNA recombination pathways. This family includes proteins related to ERF.	MKTSESIVKLSVGLTKLRAEIVQPKKTANNPFFKNSYVPLNMVMAAIDNASKGTGVSYINMPVSGEKTIGTVLRINHESGEFMEFDPFMMPLEKNTAQAAGSALTYAKRYVLSAAFGIDSEVDDDGNAASGNNGNNNSNQQKQQSKPKEITKVQIDNIKTKANQLAEKNGGDLGAVYQALKIADVNTLSKSYADECIATLDQWLGGV*	mmseqs_cdd	common_virus	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0048	cloud	direct	high	623	0.998	GCA_001715655.1_01286
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	48917	49162	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	32731	32976	GCA_001715655_1_24_64	GCA_001715655_1_24_64	-	173147	.	.	hypothetical protein	MNKKELQDKFELMEEMGADNFHFSLEEVLGKTDYTVVQSFYIGVKPAHEVLPELESFLEEQGYKDVIEKLEEIQLEASGDE*	.	hypothetical_protein	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0049	cloud	direct	high	245	0.996	GCA_001715655.1_01287
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	49162	49740	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	32976	33554	GCA_001715655_1_24_65	GCA_001715655_1_24_65	-	173147	.	PFAM:PF07352.11	Mu-Gam-like-end-protection	MTENKLPKFEAPEANVFDEITTEMQVSEAIGYIDWTSYQKQKNQEMYEEAVKPFVERIEHADAWLKEQNDKLETSVSNLTVNLKVYLMRDNQKRVESGKKARKTVKTPFGNFSLKKQQPQFVKEEKLLMEYAKAAGKVNEKTTVSIDWAAIKKESQIIDGKIIDPNGEVVPGVKVVEQDDKATVTLNKGVDE*	phrogs_hmm	hypothetical_protein	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0050	cloud	direct	high	578	0.998	GCA_001715655.1_01288
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	49733	49996	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	33547	33810	GCA_001715655_1_24_66	GCA_001715655_1_24_66	-	173147	.	.	hypothetical protein	MKKRQRNKVKENFLSEEELMVVQLFRTCDKVWFTKHGFESRGEALSYGSILGEIKVVELTDSDVYSSKKGKVEVSAFRCNKEVANND*	.	hypothetical_protein	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0051	cloud	direct	high	263	0.996	GCA_001715655.1_01289
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	50071	50229	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	33885	34043	GCA_001715655_1_24_67	GCA_001715655_1_24_67	-	173147	.	.	hypothetical protein	MHVPDNYDQYEAYERRLSEAERAEEEELLAMEYGEIKCNQFRDEEFIHSKEQ*	.	hypothetical_protein	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0052	cloud	direct	high	158	0.994	GCA_001715655.1_01290
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	50238	50339	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	34052	34153	GCA_001715655_1_24_68	GCA_001715655_1_24_68	-	173147	.	.	hypothetical protein	MTILSFALSVIALALSTSTLTLAVYLYLAKKGK*	.	hypothetical_protein	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0053	cloud	direct	high	101	0.99	GCA_001715655.1_01291
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	50336	50581	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	34150	34395	GCA_001715655_1_24_69	GCA_001715655_1_24_69	-	173147	.	PFAM:PF10078.8	transcriptional-regulator	MRFTLTSIGEVQNNFSKILGERLLKITKVSEDTGIARSTLTRIYYKKNKAISFDVLVLLCDYLDIELSELISYKPLRKEER*	phrogs_hmm	hypothetical_protein	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0054	cloud	direct	high	245	0.996	GCA_001715655.1_01292
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	50583	50729	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	34397	34543	GCA_001715655_1_24_70	GCA_001715655_1_24_70	-	173147	.	PF05191.14	Adenylate kinase, active site lid	MNIEESNKKIKVFKTRKVECRCGKEYHREVANYCSNCGAKLSTRKEDE*	hhsuite_tools	hypothetical_protein	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0055	.	unmatched_CDS	none	0	0	.
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	50814	51089	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	34628	34903	GCA_001715655_1_24_71	GCA_001715655_1_24_71	+	173147	.	cd09725	Cas2_I_II_III	MYKPFVVTYDLGTPGANYEKVYETIQSFGSSIRFQKSVWLVKTNLTSEQMYLKLKPVLDNDDFIFICALEKNYYGWASQENWDFLRNDIFN*	hhsuite_tools	hypothetical_protein	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0056	cloud	direct	high	275	0.996	GCA_001715655.1_01293
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	51090	51266	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	34904	35080	GCA_001715655_1_24_72	GCA_001715655_1_24_72	-	173147	.	.	hypothetical protein	MKITFEGTPEEIKEMLQAIGSSKEQKEISFNINDSVRKKYSQSESAEEPTRNGVIGHS*	.	hypothetical_protein	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0057	cloud	direct	high	176	0.994	GCA_001715655.1_01294
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	51349	51537	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	35163	35351	GCA_001715655_1_24_73	GCA_001715655_1_24_73	-	173147	.	.	hypothetical protein	MPITFWILVSLWSAVVFGGTLYYMFLQDYLAERKRYKAQDYRFNNLMREINSIRFDAKGEAK*	.	hypothetical_protein	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0058	cloud	direct	high	188	0.995	GCA_001715655.1_01295
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	51537	51833	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	35351	35647	GCA_001715655_1_24_74	GCA_001715655_1_24_74	-	173147	.	PF05595.11	Domain of unknown function (DUF771)	MEVQIEERLKIIENLLKRQNLNEMTNWTVKELVESTGRSSRYIKERLLHNSKFMPKLESEGVVIYPEGVGGAININTKKMLHFIEVNHSKIFGREVYK*	hhsuite_tools	hypothetical_protein	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0059	cloud	direct	high	296	0.997	GCA_001715655.1_01296
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	51854	52030	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	35668	35844	GCA_001715655_1_24_75	GCA_001715655_1_24_75	-	173147	.	.	hypothetical protein	MQEFENVKQALRAAFDLVDAKGITTDGAVATTEQVQELIKENLVNLADLLGMEELYLD*	.	hypothetical_protein	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0060	cloud	direct	high	176	0.994	GCA_001715655.1_01297
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	52093	52281	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	35907	36095	GCA_001715655_1_24_76	GCA_001715655_1_24_76	+	173147	.	.	hypothetical protein	MGVKITGLDKLMKQLNDPKELAKKVIDNNNGIEIDCPNCQKKIKVPLNGTTCSCGKKIKLNL*	.	hypothetical_protein	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0061	cloud	direct	high	188	0.995	GCA_001715655.1_01298
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	52271	52426	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	36085	36240	GCA_001715655_1_24_77	GCA_001715655_1_24_77	-	173147	.	.	hypothetical protein	MTRNEEMKVKLSVEGIDAMQIKVGKLAEILKEAKTLADELASMEIEIKTKD*	.	hypothetical_protein	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0062	cloud	direct	high	155	0.994	GCA_001715655.1_01299
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	52440	53174	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	36254	36988	GCA_001715655_1_24_78	GCA_001715655_1_24_78	-	173147	.	COG3646	Phage regulatory protein Rha [Mobilome: prophages, transposons]. 	MQTIERTITSNEVSEMVGKEHSKLIRDIRTYVGYLAEAKIGSGDFFIESSYSDSNKQERPNYLLTKQGCEMVSNKLTGAKGVQFTARYVSRFNQMENHIKQQSDTSNLSPELQMFNGIFQSLVKQEQATKQLESKVDNISDIVGVNYTNWREECNKLINKVVNVRGGFDEHKNVRSEIHKEVDKRAGVSLSIRLTNKRRRMADNGVSVSQRNKLSKTDVIAEDKKLIEIYTVVVKELAIKYKVF*	mmseqs_cdd	nonviral_gene	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0063	cloud	direct	high	734	0.999	GCA_001715655.1_01300
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	53191	53487	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	37005	37301	GCA_001715655_1_24_79	GCA_001715655_1_24_79	+	173147	.	.	hypothetical protein	MYFLSSIINVKGGDIDMNATELEKIISAKTNEVYDTGGLATLTTVLPSLFEQADVPLNEKQLMLLNSSSELLAKSITKNTLVATINLLVEIGVLKGEN*	.	hypothetical_protein	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0064	cloud	direct	moderate	248	0.835	GCA_001715655.1_01301
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	53444	53572	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	37258	37386	GCA_001715655_1_24_80	GCA_001715655_1_24_80	-	173147	.	.	hypothetical protein	MQIQNKKPRTKKVQSYKKIDANKLSCGKLNFHLLKHLSQPKD*	.	hypothetical_protein	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0065	cloud	direct	high	128	0.992	GCA_001715655.1_01302
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	53584	53829	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	37398	37643	GCA_001715655_1_24_81	GCA_001715655_1_24_81	-	173147	.	PFAM:PF13744.5	transcriptional-repressor	MTIDLKRIKAERIAKGFTQDEMAEQLGWKTRTPYAKRENGLVGIGADELGRIAHVLGYSTNELGIFFTKNVPDEERKLQKV*	phrogs_hmm	hypothetical_protein	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0066	cloud	direct	high	245	0.996	GCA_001715655.1_01303
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	54006	54695	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	37820	38509	GCA_001715655_1_24_82	GCA_001715655_1_24_82	+	173147	.	PDB:2FJR_A	Repressor-protein-CI	MRSNDEIITILTDLKNKKELSLSELARRVGMAKSALSRYFNKTREFPLNKVEDFARVLDSTSEYILGFEDEDITSIYSQLNEQRQTKVYNYASRQLEEQNSNVTSIDKNKKVYVLGKTAANPTEVSYGDAVYDETIDTNVPRNADCALVIQGDSMEPLLHDGSIVFYKQQCEVENGEVAIVDIDGNGVTCKKVYFNYDDNIVILKSLNSKYDDRELSPERVRIIGKVVL*	common_virus_hmm	common_virus	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0067	cloud	direct	high	689	0.999	GCA_001715655.1_01304
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	54720	55310	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	38534	39124	GCA_001715655_1_24_83	GCA_001715655_1_24_83	+	173147	.	.	hypothetical protein	MLVVGVISVIIFIVSLVLFFVNYFRRKNVKVLLLIMLVSLVMIFVGIGIGAKDEVNNKASDNKKEVSKKEVKDDKMSEDQWKEYQKEFKELVKMSIDANDSISVLVSSYSVKKYSTSIAVDVKVSQDIKYVSKEQKQKAADGLGQVFYGAASGALATTIGTPDAMSLDIKMHYSDDDVLFTENRMIVNPKEFKVKN*	.	hypothetical_protein	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0068	cloud	direct	high	590	0.998	GCA_001715655.1_01305
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	55435	56541	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	39249	40355	GCA_001715655_1_24_84	GCA_001715655_1_24_84	+	173147	.	PDB:1Z19_B	Integrase	MASIQKLSKGNYRYRISYKKNGKYKTISKSGFSNQKLANIAAAEVEKKLFQGHDVNAGNNDIVESFQEWFEIYKKGKRTIENDKHYFYAIKFAKQYFSDTALKDLTKEMYQAALNDFGDSHHKETTRKRHTYFRSFIREMFEEGKIARDPTARIELTGRENENDTLKCLTEKETTILLQAVNRNLTLKYKSRYFIKFAIATGCRFSEILGLTWDCVDLKNKTVKINKTWNYLDNSGFKKTKNASSNRTITIDDNTVAWLAEMRQNRIVELSGNNLVFTDDGVKPITNNAVNKCLRNICIKENITVITCHGLRHTHATLLLYNDCNIKYVSKRLGHETIVTTLQTYSHVMDEMEQKEYTKVNEFMKKII*	common_virus_hmm	common_virus	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0069	cloud	direct	high	1106	0.999	GCA_001715655.1_01306
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	CDS	56869	57588	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	40683	41402	GCA_001715655_1_24_85	GCA_001715655_1_24_85	-	173147	.	TIGR02404	trehalose operon repressor, B. subtilis-type. This family consists of repressors of the GntR family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gram-positive lineages and does not include the TreR from E. coli. [Regulatory functions, DNA interactions]	MGNKNKFMDIYKDLARAIDGKVYRVGEPLPSENELAQKHNVSRETVRKALRRLSETGYIQKRQGKGSIVLDKTRFDFPVSGLTSFKELMDTNLSDNYTKIIRNEEMFLPAELADSMAMPHDFPVIRLTRVRYIDGEAVIIDDDYLSKKYVESIPDERAMISIYDYMENDLDLKIDFAHKQYTVEPVSKEDETLLDLHEDTHVVVVRSDVHLENTEFVEYTISRHRLDKFRFVDFARRQH*	mmseqs_cdd	nonviral_gene	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_CDS_0070	persistent	direct	high	719	0.999	GCA_001715655.1_01308
GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote	cenote	CDS	102662	103153	GCA_001715655.1	MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655.1_MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655_1_28	GCA_001715655_1_28@C6	1	492	GCA_001715655_1_28_102	GCA_001715655_1_28_102	-	382888	.	.	hypothetical protein	MIVTLILIGLTLFAIGFLFIVIRFFNHKPKRKFIITALVGFLLVAIGVFLTPGTETDKPTESKKTTESSSTTHSSNIDSTSNSQTTSTVPIQSSTTTSTTTENSLSSTSSSSNTNTTPDTTDTVTSTSIETTTESSTSTTESSSSTNEQIENATTDSTPEGTE*	.	hypothetical_protein	C6	29190	102662	131852	GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote_CDS_0001	persistent	direct	high	491	0.998	GCA_001715655.1_02266
GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote	cenote	CDS	103337	103861	GCA_001715655.1	MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655.1_MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655_1_28	GCA_001715655_1_28@C6	676	1200	GCA_001715655_1_28_103	GCA_001715655_1_28_103	-	382888	.	.	hypothetical protein	MTEHFDITTHTLIAYQDQKLRNSKIFLAFRWIYSLLLTFVVTMLAFLYDVNLVVIGWLALGLFLVFTFIFCFTPLFAMVLTGISRKMTKVERFPVTIALTKEGLTQTINDRVLFINWSDFKRIYNDDEYFFLATKNDVCPLPLSSTENTKRLIYQNIKANAPKCKGIEKLKISK*	.	hypothetical_protein	C6	29190	102662	131852	GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote_CDS_0002	persistent	direct	high	524	0.998	GCA_001715655.1_02267
GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote	cenote	CDS	103986	104921	GCA_001715655.1	MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655.1_MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655_1_28	GCA_001715655_1_28@C6	1325	2260	GCA_001715655_1_28_104	GCA_001715655_1_28_104	+	382888	.	pfam13536	Putative multidrug resistance efflux transporter. This is a membrane protein family whose members are purported to be related to the DMT or Drug/Metabolite Transporter (DMT) Superfamily. Members are all uncharacterized.	MRAIIIGIIAAFFFAFTFVINQLMSDLGGDWMWSASLRYFFMVPFLLLLVLFKSGFKKMWSEIKKRPFAWFIYSQIGFGLFYAPLCFAADYSPGWLVAGTWQITIVAGALMSPLFYEKIQTATGIVKVKGRIPLTGLCWSGVIIVGIIIMEVSHATTVGLKGIVLGTLPIIIAAFAYPYGNRKMMEVTEGRLNVFERVLGMTLCSLPTWLILSIIAGTRSGIPSMSQVSNSIIIALFSGVIATLLFFKATDLTQGRMKELAAVEATQSMEAVFSFILGLLILNSAVPSFSAWIGLIVVVFGMTAHSLSQRN*	mmseqs_cdd	nonviral_gene	C6	29190	102662	131852	GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote_CDS_0003	persistent	direct	high	935	0.999	GCA_001715655.1_02268
GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote	cenote	CDS	105023	105253	GCA_001715655.1	MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655.1_MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655_1_28	GCA_001715655_1_28@C6	2362	2592	GCA_001715655_1_28_105	GCA_001715655_1_28_105	-	382888	.	.	hypothetical protein	MEHATKVGIKGNYYDISIREVISNIAFTIVYNPLTITDIDQADEWVTSSANGKCIHKISAIEHDTRKNTRRIFLKE*	.	hypothetical_protein	C6	29190	102662	131852	GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote_CDS_0004	persistent	direct	high	230	0.996	GCA_001715655.1_02269
GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote	cenote	CDS	105505	105729	GCA_001715655.1	MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655.1_MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655_1_28	GCA_001715655_1_28@C6	2844	3068	GCA_001715655_1_28_106	GCA_001715655_1_28_106	-	382888	.	PF09953.9	Uncharacterized protein conserved in bacteria (DUF2187)	MMALSSISFDNRSKQVDKEVPFNIGDGVSFIRGEVMFKGTVTKMYDNSALIELFDTPNYEFNNTVCNFKRMQLL*	hhsuite_tools	hypothetical_protein	C6	29190	102662	131852	GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote_CDS_0005	persistent	direct	high	224	0.996	GCA_001715655.1_02270
GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote	cenote	CDS	106195	108312	GCA_001715655.1	MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655.1_MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655_1_28	GCA_001715655_1_28@C6	3534	5651	GCA_001715655_1_28_107	GCA_001715655_1_28_107	+	382888	.	PDB:5D5H_A	DNA-topoisomerase-1	MKIVILAEKPSQAKAYAHSFKSKQKIEGGFLIKDALFEDEVAITYGYGHLVELQAPESYKPEWKKWSLNELPMFPESYQFKVAKDKRAQFRIVKRLLDEADEIIVATDSDREGENIARSIIKVSGNEHKPTKRLWINSLENDEIRKGFESLRPGEDYFSSYIEAQTRQISDWLIGMNISRLYTLLLQQKGLSGVFSIGRVQTPTLYLIWQRQQEIENFEPQTYFEAYIHVNAAQGTYVGKYKDTFKTLPELIDFFKGFDVIHQQEQAARIAKVETKEKKEYAPRLYSLSDIQSQANKLYKVSPATTLKIVQTLYEKKLVSYPRTDCHYITPAEYAYLKKNLEGYCERAGVEIKDPQNYATKRHVDASKVQEHYAIIPTKKIPTAAALAKLGPMEQRLYHLILRRTLAIFAQPYIYDETIILTDVNTQIFKTTGRMIRQLGWKEIIGAAKKKTDEEKLPIVELNEVVQSRLYEKEAETKAPPAYTEGTLITAMKNIGRTAEDEAKAILKAIEGIGTEATRASILETLKRQDYIEVTANQLQVTAKGSILCEAIVGVEISSAEMTAKWESYLKKIHDKTGTQEAFLGSIQRFIQHLIATVPEQIGTEKIAIPMTEEPLGICPSCGASVLEKFKVYGCEKCDFVIYKKILNKKISRPMCSKLLKSRRTALIKGFLSKKGKKFNAVLILDDANKVAFEFITFKPKVKKS*	common_virus_hmm	common_virus	C6	29190	102662	131852	GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote_CDS_0006	persistent	direct	high	2117	1.0	GCA_001715655.1_02271
GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote	cenote	CDS	108319	108672	GCA_001715655.1	MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655.1_MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655_1_28	GCA_001715655_1_28@C6	5658	6011	GCA_001715655_1_28_108	GCA_001715655_1_28_108	+	382888	.	2HEP_A	SR384, AUTOSTRUCTURE, Northeast Structural Genomics	MFDQSEPINWHQLLNYAILRQRVQEKRSVFTMKVDLNRINALAKKKKEEGLTPAETKEQLKLRKAYLGEIRGQVLGTIDGLKILDKEGNDVTPDKLKHANSQKKHAGNILSNKIPRV*	hhsuite_tools	nonviral_gene	C6	29190	102662	131852	GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote_CDS_0007	persistent	direct	moderate	260	0.734	GCA_001715655.1_02272
GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote	cenote	CDS	108775	109377	GCA_001715655.1	MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655.1_MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655_1_28	GCA_001715655_1_28@C6	6114	6716	GCA_001715655_1_28_109	GCA_001715655_1_28_109	-	382888	.	PRK07578	short chain dehydrogenase; Provisional	MKKALIIGGTGTIGSAVAKALSTTHEILIASRSSEYQVDLASPTSIKALFDKVGTVDAVIISAGAAHFGPLATMTPEDNLLSANNKLLGQVNTVLIGKDYVADNGSFTLVTGIIMDEPIKDGASAAMANAGVKAFAKSAATEMPRGIRINTVSPTVLDESWSIYKDYFVGFETVSSNKVANAFVKSVNGVQTGQSFTVYQ*	mmseqs_cdd	nonviral_gene	C6	29190	102662	131852	GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote_CDS_0008	persistent	direct	high	602	0.998	GCA_001715655.1_02273
GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote	cenote	CDS	109493	109993	GCA_001715655.1	MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655.1_MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655_1_28	GCA_001715655_1_28@C6	6832	7332	GCA_001715655_1_28_110	GCA_001715655_1_28_110	-	382888	.	PF04173.13	TQO small subunit DoxD	MFNWLRSSKIAMPILTVLRVYLGVQWFTSGFHKIFGDTPFDAGGFIGNIVKNPVVGPEGNQLYPAYTWFMETFAVGNSQFFSFLVMWGELLIGLGLIVGLFTSTAAFFGIVMNFLFLFGGTVSVNPLYLILGLLVLVGGRNSGTIGLDFYFRKYVSPKLFKQRQHR*	hhsuite_tools	hypothetical_protein	C6	29190	102662	131852	GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote_CDS_0009	persistent	direct	high	500	0.998	GCA_001715655.1_02274
GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote	cenote	CDS	110867	111496	GCA_001715655.1	MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655.1_MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655_1_28	GCA_001715655_1_28@C6	8206	8835	GCA_001715655_1_28_111	GCA_001715655_1_28_111	+	382888	.	PF01810.18	LysE type translocator	MENYFTSLLVGLVIAMPVGAISVEMTKQTLKNGFIHGWAVGIGGMTIDVALIIALYLGFANILSLPYIQSPLWLIGAVFLVFIAYDSIKNANKDINLAGEKTNKSFFKTYRNGLIVAVSPGNLVFWVTVFGTVLTDSYTKSNSQFFIVALGILSGILLHDVSLLSIVSLTRKIMNRKAIKWSSIVAGILLLGFACYFLYEFYMSVKAFF*	hhsuite_tools	hypothetical_protein	C6	29190	102662	131852	GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote_CDS_0010	persistent	direct	high	629	0.998	GCA_001715655.1_02275
GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote	cenote	CDS	111624	112322	GCA_001715655.1	MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655.1_MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655_1_28	GCA_001715655_1_28@C6	8963	9661	GCA_001715655_1_28_112	GCA_001715655_1_28_112	-	382888	.	PDB:2FJR_A	Repressor-protein-CI	MIYYTYQRGVEMRTLGSRIKFLREKKHLTQTELAEKVGAKTYTTISKWESDENFPKGKDLKILAELFGVSADFLLGIEPSVQTFQTSECHDTDIELPLYGDVAAGALAELESIDVWDVKTVKLPKFLLPQSMLSDKLFAMHVNGDSMDKIIPNGSLIVVKPIEQSLYNDGDIVVFSYNGEYSLKRYRPNAMEGFVLFEADSINPDFKNIPISKSELFEANMYGKVVFCGITF*	common_virus_hmm	common_virus	C6	29190	102662	131852	GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote_CDS_0011	persistent	direct	moderate	666	0.953	GCA_001715655.1_02276
GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote	cenote	CDS	112474	112671	GCA_001715655.1	MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655.1_MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655_1_28	GCA_001715655_1_28@C6	9813	10010	GCA_001715655_1_28_113	GCA_001715655_1_28_113	+	382888	.	PFAM:PF10078.8	transcriptional-regulator	MITIAELRAKNGKMSQRALAREIDTTQTSISNWEKDPLSMNAENIVKLCLYFNVTSDEILGIKRE*	phrogs_hmm	hypothetical_protein	C6	29190	102662	131852	GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote_CDS_0012	persistent	direct	high	197	0.995	GCA_001715655.1_02277
GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote	cenote	CDS	112949	113182	GCA_001715655.1	MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655.1_MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655_1_28	GCA_001715655_1_28@C6	10288	10521	GCA_001715655_1_28_114	GCA_001715655_1_28_114	+	382888	.	.	hypothetical protein	MNKTMINNRYYIKNKNKIEFVKKLADARLRGHEVIKIKTEKQVRSSADRDHYSYQRYKHHETSVEFLYVALLEITCQ*	.	hypothetical_protein	C6	29190	102662	131852	GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote_CDS_0013	persistent	direct	high	233	0.996	GCA_001715655.1_02278
GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote	cenote	CDS	113230	113721	GCA_001715655.1	MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655.1_MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655_1_28	GCA_001715655_1_28@C6	10569	11060	GCA_001715655_1_28_115	GCA_001715655_1_28_115	+	382888	.	TIGR01637	phage transcriptional regulator, ArpU family. This model represents a family of phage proteins, including ArpU, called a putative autolysin regulatory protein. ArpU was described as a regulator of cellular muramidase-2 of Enterococcus hirae but appears to have been cloned from a prophage. This family appears related to the RinA family of bacteriophage transcriptional activators and to some sporulation-specific sigma factors. We propose that this is a phage transcriptional activator family. [Mobile and extrachromosomal element functions, Prophage functions, Regulatory functions, DNA interactions]	MSTQDNLMIELENYKEVRPSDLSMRKTVKNVELLITAYKQEAIKAGVRAAPKVTASYSIVPPTYGNDFHSTTESAALDNIEKFEKMEYFVKKINQGLERIECVLDPERRERRKVIFVDKFIIGSNKTRIMEKLMIEHTTYHMELNMAVTDFACELGIEQRVTT*	mmseqs_cdd	common_virus	C6	29190	102662	131852	GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote_CDS_0014	persistent	direct	high	491	0.998	GCA_001715655.1_02279
GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote	cenote	CDS	114186	114794	GCA_001715655.1	MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655.1_MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655_1_28	GCA_001715655_1_28@C6	11525	12133	GCA_001715655_1_28_116	GCA_001715655_1_28_116	+	382888	.	PDB:5A21_H	major-tail-protein	MKYFSNAATAEQAKQTKIKKTIKREILKMTEAKKGIDVILLYRILKNEKDGAAWKMAFQTEHSNAKSRDNEAVPTKDGPLQNMAPIVYEFSATSIIAKGDTYIDELDDAFDAAEIIEIWEIDKAEKGTEKNSDKFKATYFQGYVSSFSKTSNSEDGLALEMEFAINGVGQKGYATLTEEQANVVSYVFKDTVKAEEPAGNNN*	hallmark_hmm	common_virus	C6	29190	102662	131852	GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote_CDS_0015	persistent	direct	moderate	524	0.86	GCA_001715655.1_02280
GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote	cenote	CDS	114876	115223	GCA_001715655.1	MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655.1_MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655_1_28	GCA_001715655_1_28@C6	12215	12562	GCA_001715655_1_28_117	GCA_001715655_1_28_117	+	382888	.	PFAM:PF12363.7	tail-assembly-chaperone-protein	MELKINGEVKVFIFGIKFVRELDKKFFIENNGMKFGTGLSTKLIEIHSGSIVALADVLHCATSTEAKRPALEDIESYLESCDKIEKVFEETLAEIESNNAGKLIARDTKKAMKTK*	hallmark_hmm	common_virus	C6	29190	102662	131852	GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote_CDS_0016	persistent	direct	high	347	0.997	GCA_001715655.1_02281
GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote	cenote	CDS	115283	115570	GCA_001715655.1	MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655.1_MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655_1_28	GCA_001715655_1_28@C6	12622	12909	GCA_001715655_1_28_118	GCA_001715655_1_28_118	+	382888	.	PFAM:PF12363.7	tail-assembly-chaperone	MTELKKIERMTFYEYTLKMTAFQLKMVDEDYVLHKAAWLAQQVKATKKMGKEMRPYYTSFEKFYDYAKRERMVLGQEEEALKDNDFSDLMMKANK*	phrogs_hmm	hypothetical_protein	C6	29190	102662	131852	GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote_CDS_0017	persistent	direct	high	287	0.997	GCA_001715655.1_02282
GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote	cenote	CDS	115585	116970	GCA_001715655.1	MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655.1_MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655_1_28	GCA_001715655_1_28@C6	12924	14309	GCA_001715655_1_28_119	GCA_001715655_1_28_119	+	382888	.	UniProtKB:A0A0R1V141_9LACO	Minor-tail-protein-	MGTNKTGMELNIDNNGFVSGITTAIDKTKEIADVSFGAAQKIAEMGSALAGIFDKIGVFSSISEGSKTAMGDIEGAIDNGLNNVFLEIAKTLKSADLGAFDELVTQINSVISQIVSVIDQGFGVIISYIPKLMEPVMVFLSYFQEHSETLIPIITALVAAFLTVGTVVVVLIKVAETIATVKASIDLFKDGLKLVSSPMGIAVLAIMALAAVAILVYENWEKISEFLSNLWTAIKEKAVAIFTAIVDFFKKWGGALLSILGGPIGIVVGLIIRHWDTIKAKTIAAFNAVANFLGDCWNSIVGFFQGGVDKVAGFIDKMIGVFNIIKEFSLVDAGKAIIDGFVNGLKAAWEAGKKFVSGIGDWIKDHKGPISYDKRLLVENGQSIMFGLDKGLQNGFGDVMSNVNGMSHSISASFTADASQSNTATTQPAQFVVNIGKQNFTAFVADISDAMGGETQINMQI*	hallmark_hmm	common_virus	C6	29190	102662	131852	GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote_CDS_0018	persistent	direct	high	1385	0.999	GCA_001715655.1_02283
GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote	cenote	CDS	116986	117753	GCA_001715655.1	MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655.1_MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655_1_28	GCA_001715655_1_28@C6	14325	15092	GCA_001715655_1_28_120	GCA_001715655_1_28_120	+	382888	.	PDB:4DIV_S	Receptor-binding-protein	MYTFKDVKKDPFRKMKYIPTSAMRYDGFLLEDILEGYTTLKVEGREMTSIVLESTEAQIGAIITNQRLPARIITVTYKLQNKNALELQRDFKELMFRLYRDEDVAISFEDEPTTTYYGRFETADTVEGSSNNIISTFTLFCSDPYKYGAENITIGAINHHLHYPVTPMTVTAKMTKTSTLSIVNGSQTLKITSETLAVNDVVLFDFKNGKVFVNNVDRTNLLDLDSDFSNFQLKTDDRVTSDVATLSIVYRSVEL*	hallmark_hmm	common_virus	C6	29190	102662	131852	GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote_CDS_0019	persistent	direct	high	767	0.999	GCA_001715655.1_02284
GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote	cenote	CDS	117750	118901	GCA_001715655.1	MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655.1_MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655_1_28	GCA_001715655_1_28@C6	15089	16240	GCA_001715655_1_28_121	GCA_001715655_1_28_121	+	382888	.	PDB:3GS9_A	tail-protein	MSVYFFDNKQQLIKMKNNRTLMQCLQEQEITSDKSDLLKDTLTVSCLYDSELEQAEYIAVRERKSVYSLYKIQEEEIDAEIMNFKGINFGLDELSNYIVKEEQSQKQTLTEIAKQVVKATDGEWHVTGIVNKVASATFQYISVKDALKTIQSLGCELLFRCEISGTGISKKWIELHDKIGKESTKRYEVGSTALKVVRTKNRSNIITSIVGRGKGEDVGDGKGKRLGFEKVDWKTPVVKPKGQAFLELKKLTEVHGIPMKNGGMRRREQVVVFDDIEDDKELLTATYQMLLDNSRQLVQFSSEVIGASSIGDRVSIHDYDKGYHYQTRVFSVKYDCLTNKVDTSLGDNLQGSSATTQLANVQNGVSELQSVKMNFYDSTEVSK*	hallmark_hmm	common_virus	C6	29190	102662	131852	GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote_CDS_0020	persistent	direct	high	1151	0.999	GCA_001715655.1_02285
GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote	cenote	CDS	118951	119841	GCA_001715655.1	MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655.1_MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655_1_28	GCA_001715655_1_28@C6	16290	17180	GCA_001715655_1_28_122	GCA_001715655_1_28_122	+	382888	.	PDB:3GS9_A	tail-protein	MSPWDAKKGESRQPYQMVIMNKESLKESDHFLVMNSEGIGFINGDFDKDKFETAWTIDGEFNANYIRAGVLSGILIKGNIIKSSDEGDFQIVLDGGRLSFETKTLGDDPENQHGSAIAKITPTYGKSEGSDELKANGVAITQIPGQIFSINSGGQSGSRAVVQVPAESTMDSLKLNLYGEVRVVGDFYVNGIKIDGNGGTGGGNGGWNGQYPPEVTSDIDKRAWAIWSTLRGHSYSKAASAAILGNIQGESGPQMNPDTEQVGGPAYGLVQWDGSAYPLVGQPTDNGREYVQRLMK*	common_virus_hmm	common_virus	C6	29190	102662	131852	GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote_CDS_0021	persistent	direct	high	890	0.999	GCA_001715655.1_02286
GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote	cenote	CDS	119902	120510	GCA_001715655.1	MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655.1_MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655_1_28	GCA_001715655_1_28@C6	17241	17849	GCA_001715655_1_28_123	GCA_001715655_1_28_123	+	382888	.	PDB:3GS9_A	tail-protein	MKSGQWIGAIEPKTVSGFKASTSPRTAAGAFLYNFERPAAAHPEREDYAQAWYDKFKDLKQPGGKYGMPVAPGYQITSWFGNRDDPLNPGNIVTHKGMDFADKSGSPIFAAESGEVIASLPTASSGGFGEYIVIKHADDNCTGYGHLTTRMVNISKKVTKGQQIGTMGSTGQSTGPHLHFSVGADLWGPYQDPAPYLGLKRP*	common_virus_hmm	common_virus	C6	29190	102662	131852	GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote_CDS_0022	persistent	direct	high	608	0.998	GCA_001715655.1_02287
GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote	cenote	CDS	120523	122493	GCA_001715655.1	MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655.1_MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655_1_28	GCA_001715655_1_28@C6	17862	19832	GCA_001715655_1_28_124	GCA_001715655_1_28_124	+	382888	.	PDB:4DIV_C	Distal-Tail-protein	MTVYQFKLSTTAVANQVELIRVRQDDDESQIFRATIFEDGKVKNLNGVSAEFNMVDAQHHIVVDDARIVDATNGIVEYQLRKEAMLSVGRCNAYFSFKSNKEVVYSTKDFNYNVIWSALSSPMHQGCDYVWTASDLIDSLKDWIEHAMGDFDDWFESVKEILASIDPGGVILNELLELKKKMAEIELKENTLDLKNSEVFFYSDLGLASNTIPGCFAIDDQRDYIYTYQSSTDIPTVTRTNSNGVYLDKMDIPNGKDMKSLGCDFAQGVANLWVEVGADLVRFTYTPGGNLDTSVNKTKITFDGSVNRKRFGVSIDNYQGVVSCIVDEMIVVYSLKDIGQQPIKSIKIDSDIMSSLCGFHYFDNKAFVLSSENSVRNPTYITTYTEDGRVINYKIDVFGDIEEEHYSTVRYPNGIQLLKNRTTNKLSLVFSVTRGRIGFRETQLFALHQKGNDLKRLFNLAQFGQNYRMMSSSGRSQLISEGTTELKNITRPGYYYITVDLATKLKDIPMHTGKHGYFLEVQPTNNWGIFIQTLKRNAQGTTVMTFERVINPSSNIIGEWNLSQGRMPNKISYWDETTKVLSSVRYPIEYYITSTEFNKLNDIPTEFKTGAGYWIEISTLGTNNAVVQTITKNGLSGFFQAKRIVSDEKIGEFKVL*	hallmark_hmm	common_virus	C6	29190	102662	131852	GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote_CDS_0023	cloud	direct	high	1970	0.999	GCA_001715655.1_02288
GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote	cenote	CDS	122507	123616	GCA_001715655.1	MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655.1_MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655_1_28	GCA_001715655_1_28@C6	19846	20955	GCA_001715655_1_28_125	GCA_001715655_1_28_125	+	382888	.	cd00840	Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	MNKQNKLVYQTTVNIEQELYRVRDAVNKLRKPNSVVVPFLTDTHAGVRNKNLSYLKKTGYDHMENLVNLTKILNCDYVVHGGDVIDGSSLTLADVHLSFEETVKRLMEIEVPVFMMRGNHDDNSLGDSYLANDLSHVISFDTLKNYLFDKRLHKSKLIDNPLEPGGSYGYYDDERNKIRVFFFDSFNTRQELLNGDYKFPLVSSKGCFANTQLNWMADKMKRIPSGYKAMIFSHTGLVDYRNSNSIIHPEVRNAGAVQALLKAFETGSKLSYKGTDKDFPIQVDIDFGGVATNVLAWINGHVHGDYLKEIPQTKIPSIANLCSKPDSTETYQYRKFGTIYEDSFTVFVVTPTQLDSKIEMVRFGAGRII*	mmseqs_cdd	common_virus	C6	29190	102662	131852	GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote_CDS_0024	cloud	direct	high	1109	0.999	GCA_001715655.1_02289
GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote	cenote	CDS	123635	125200	GCA_001715655.1	MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655.1_MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655_1_28	GCA_001715655_1_28@C6	20974	22539	GCA_001715655_1_28_126	GCA_001715655_1_28_126	+	382888	.	PDB:4DIV_C	Distal-Tail-protein	MVVKKIKFNHLDVNADLKPLSDLNVEFYDQDINTSVLRFKLTYFEKGIDLSSKKINTYIFLVAEDGSKVSDYLAVFNETEGIVSYTIPKDFLKHTGRVRGQVYLYQQDNIIVTREFSFMIKASLVNSFSSETKVEYIKTFDDLETVVKSKVIAIEEAIKGGTDYVSQMIETVKNGEKIITDVSNNAITTVTTKTDTLLQTIADNNVALKKDTYIYTDGNGFSREVSKGETDWYRITDAGNYSITKEEMSINAPPKGDSFNLIVNTSSPSLRDLTAVNSVSGAIYTNVLSSSGWSGWKQLLRDVDTSHWQKQATTNEDGTSINISGYNLLDVEDIKNFDGYVTSALNAPINITSGYVKRKYRSGYIEIVFAPHSGKQVYRNSYNAAAKVWVGWEKNVNASELAELKGTDTGWQPLKLINGVTASVAPMYRLYSNNNIYSLSFKGTMNAFTNRDTVIAKLPSTVIEKLDRSLTFLCLTSVNASTARFNRWIVELNGDVKFTASNYNTDGSSGAWNPLDITLTI*	hallmark_hmm	common_virus	C6	29190	102662	131852	GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote_CDS_0025	cloud	direct	high	1565	0.999	GCA_001715655.1_02290
GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote	cenote	CDS	125244	125396	GCA_001715655.1	MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655.1_MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655_1_28	GCA_001715655_1_28@C6	22583	22735	GCA_001715655_1_28_127	GCA_001715655_1_28_127	+	382888	.	2XF5_B	GP23.1	MYKVVGNAYNSGRYTMDNLRLLVVAKMLTTQQFEELTSFGFYLSEMGDGD*	hhsuite_tools	hypothetical_protein	C6	29190	102662	131852	GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote_CDS_0026	cloud	direct	high	152	0.993	GCA_001715655.1_02291
GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote	cenote	CDS	125396	125617	GCA_001715655.1	MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655.1_MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655_1_28	GCA_001715655_1_28@C6	22735	22956	GCA_001715655_1_28_128	GCA_001715655_1_28_128	+	382888	.	PFAM:PF10779.8	holin	MEKDIETEILVKLAKIEENTKGLDETTKIAGTAFHLAKELEKRQDRMDISNKWSWGFIITLGITLIGYFLTKL*	phrogs_hmm	hypothetical_protein	C6	29190	102662	131852	GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote_CDS_0027	persistent	direct	high	221	0.995	GCA_001715655.1_02292
GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote	cenote	CDS	125630	125905	GCA_001715655.1	MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655.1_MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655_1_28	GCA_001715655_1_28@C6	22969	23244	GCA_001715655_1_28_129	GCA_001715655_1_28_129	+	382888	.	PFAM:PF04531.12	Bacteriophage-holin	MKSYLGINWKVRIKSKIFWMAFIPAILFLCSKLLVLFGIVFDFTQIEERLLDIVGAVFSILVLLGVVVDPTTIGAGDSEQAQRYDELRGGE*	common_virus_hmm	common_virus	C6	29190	102662	131852	GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote_CDS_0028	persistent	direct	high	275	0.996	GCA_001715655.1_02293
GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote	cenote	CDS	125909	126721	GCA_001715655.1	MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655.1_MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655_1_28	GCA_001715655_1_28@C6	23248	24060	GCA_001715655_1_28_130	GCA_001715655_1_28_130	+	382888	.	PDB:4OLS_C	Endolysin	MKVINNAVCRGVAGKRIGNVKGVVLHNTWDNKSANSHIERLGKMNNKQLEEGFAHYYVDEETIVRVEDTFNKAWHTANVEGNAYYIGIEVKGNRQTTKQVFLKAEQNAFKQAYDDLKYYNLPISRNTVRLHCEFTATECPKRSLIEHCGYDSNQKQPQAVIDKLKDFFIAQIKKQGNTDTIKPPAALKPQEVKRVAEKGIFYPNTRVAIKHTPTLKAKQEATLGKGESVIYDSYVKSNGYVWVSYIRNNGKRGYACSRDVKTGKAYGEFK*	common_virus_hmm	common_virus	C6	29190	102662	131852	GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote_CDS_0029	persistent	direct	high	812	0.999	GCA_001715655.1_02294
GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote	cenote	CDS	126902	127741	GCA_001715655.1	MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655.1_MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655_1_28	GCA_001715655_1_28@C6	24241	25080	GCA_001715655_1_28_131	GCA_001715655_1_28_131	+	382888	.	PDB:3HDF_A	Lysozyme	MNISKVGLDLIKEYEGLRLTAYKPVASEQYWTIGYGHYGPDVWAGQVITRAQADAYLRSDVRRFEKAVNSAVKVSINQNQFDALVSFTYNLGEGTLYSSTLLQYVNKKQFGNAADEFLLFVNAGGQPLPGLVRRRKQERALFLKAYNAILWRYAREDLNLRTKADWNSSVGATVPLGYAAQINYGVQSNDFVQVIFREKKYWYKESLTLYWYDQDPAVVYTVVTEIGFRGQSKWDSRIVAKRKKGDKVRVVGTSQNGWLKCVLDDTVGYIPNNSMYLVK*	common_virus_hmm	common_virus	C6	29190	102662	131852	GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote_CDS_0030	persistent	direct	high	839	0.999	GCA_001715655.1_02295
GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote	cenote	CDS	127867	128343	GCA_001715655.1	MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655.1_MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655_1_28	GCA_001715655_1_28@C6	25206	25682	GCA_001715655_1_28_132	GCA_001715655_1_28_132	+	382888	.	PRK05528	peptide-methionine (S)-S-oxide reductase. 	MEEIYLAGGCLWGVQAFIKTIPGVHKTEAGRANGNSDSLENQYDGYSECVKITFDSQTLTVESLMTYLFEIIDPYSINKQGEDIGEKYRTGVYSKNKKHLEAAQHFIDIRDDADQIAVEVCLLTNYLRSAEEHQDRLDKFPNDYCHIPDMLLKKYRKV*	mmseqs_cdd	nonviral_gene	C6	29190	102662	131852	GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote_CDS_0031	persistent	direct	high	476	0.998	GCA_001715655.1_02296
GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote	cenote	CDS	128531	128818	GCA_001715655.1	MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655.1_MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655_1_28	GCA_001715655_1_28@C6	25870	26157	GCA_001715655_1_28_133	GCA_001715655_1_28_133	+	382888	.	2K19_A	Putative piscicolin 126 immunity protein	MVKWYGSGQERASEALVIISKIINALTVENHRPLVSIFEEAYRELEKPTQSPTLILSRLQLSVSGCLTKNEIVLPRETQELLSQLSSLSYIRYGG*	hhsuite_tools	hypothetical_protein	C6	29190	102662	131852	GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote_CDS_0032	persistent	direct	high	287	0.997	GCA_001715655.1_02297
GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote	cenote	CDS	128881	129066	GCA_001715655.1	MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655.1_MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655_1_28	GCA_001715655_1_28@C6	26220	26405	GCA_001715655_1_28_134	GCA_001715655_1_28_134	+	382888	.	.	hypothetical protein	MVVIAITVCYVEAISVDELENKVKERLHELQLDHEVKGVNTSVTFTNYGTREYLAQITYVK*	.	hypothetical_protein	C6	29190	102662	131852	GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote_CDS_0033	.	unmatched_CDS	none	0	0	.
GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote	cenote	CDS	129339	129584	GCA_001715655.1	MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655.1_MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655_1_28	GCA_001715655_1_28@C6	26678	26923	GCA_001715655_1_28_135	GCA_001715655_1_28_135	-	382888	.	.	hypothetical protein	MDQKIWQDFRKDIVDDHQELPFYLDGKEWWISRLYGEEKSYLLTAPNSDTQFFKTAEELVEKGIVHGKTFIEQIPFLTLIK*	.	hypothetical_protein	C6	29190	102662	131852	GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote_CDS_0034	persistent	direct	high	245	0.996	GCA_001715655.1_02298
GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote	cenote	CDS	130608	130907	GCA_001715655.1	MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655.1_MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655_1_28	GCA_001715655_1_28@C6	27947	28246	GCA_001715655_1_28_136	GCA_001715655_1_28_136	-	382888	.	.	hypothetical protein	MSTLKALNDSKSEGLEKVLHTINHLSSSNIHIRKHLEVSHRQSFTIYDMLSDAKIGSITANYQADTITIQSQVHSDIRLYTITEPKDYLKLLFYLSDIK*	.	hypothetical_protein	C6	29190	102662	131852	GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote_CDS_0035	persistent	direct	high	299	0.997	GCA_001715655.1_02300
GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote	cenote	CDS	130991	131851	GCA_001715655.1	MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655.1_MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655_1_28	GCA_001715655_1_28@C6	28330	29190	GCA_001715655_1_28_137	GCA_001715655_1_28_137	+	382888	.	PF11428.8	Protein of unknown function (DUF3196)	MSSEEDRMLKKMLVSANRVAPEDRQITNLLIDIYQTESKHYEAIQVGERFMRIVATDIDIIEKLAASYLKSGRIREYQHWLEDLAIVEETKTIEAVEQTDNLTYMSASFVIHPHIQFARWPLHDQLGFLERGSYVQLKGYFQDIHQLLQDEGITMEQRVALIEALHRLEDVSQYKLVVMGEEVTVIPAQIDLRVDNTFYNSLIERVTVELENENPSLAQEVETVIRRHQTATYPLTPDFGTVNEWCESYLEWFYRLNQEPLDNADVSQEVLKIDEVERYALENMSF*	hhsuite_tools	hypothetical_protein	C6	29190	102662	131852	GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote_CDS_0036	persistent	direct	high	860	0.999	GCA_001715655.1_02301
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	tRNA	56676	56747	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	40490	40561	tRNA-Arg	tRNA-Arg	-	173147	.	tRNAscan-SE score: 56.3	Arg	NA	tRNAscan-SE	.	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_tRNA_0002	.	.	.	.	.	.
GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote	cenote	tRNA	41032	41103	GCA_001715655.1	MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655.1_MDLK01000031.1	GCA_001715655.1|MDLK01000031.1	GCA_001715655_1_24	GCA_001715655_1_24@C2	24846	24917	tRNA-Trp	tRNA-Trp	-	173147	.	tRNAscan-SE score: 58.7	Trp	NA	tRNAscan-SE	.	C2	41402	16187	57589	GCA_001715655.1|MDLK01000031.1@region_16188_57589@tool_cenote_tRNA_0001	.	.	.	.	.	.
GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote	cenote	tRNA	130344	130417	GCA_001715655.1	MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655.1_MDLK01000036.1	GCA_001715655.1|MDLK01000036.1	GCA_001715655_1_28	GCA_001715655_1_28@C6	27683	27756	tRNA-Arg	tRNA-Arg	-	382888	.	tRNAscan-SE score: 72.4	Arg	NA	tRNAscan-SE	.	C6	29190	102662	131852	GCA_001715655.1|MDLK01000036.1@region_102663_131852@tool_cenote_tRNA_0001	.	.	.	.	.	.