core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote	cenote	CDS	750499	752604	GCA_001717505.1	CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505.1_CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505_1_1	GCA_001717505_1_1@C52	1	2106	GCA_001717505_1_1_720	GCA_001717505_1_1_720	-	1274073	.	PDB:5JXR_A	Chromatin-remodeling-complex-ATPase	MNNSRIKRNYREPPVPFTLKAPFKPMGDQPKAISQLVNGLQDGHWAQVLVGATGTGKTFTMANIIEKVQRPTLIISPNKTLAAQTSSEIKDFFPNNAVYYFVSYYDYYQPESYLPTTDTYIEKDSSMNEEIDRLRHSATMSLFERRDVIIVASVSCIYGLGDPEDYSAMGLSLRPGDMISQDELLTRLVEMQYLRNDVNFTRDAFRVHGDTIDVFPASSNNTAVRIEMFGDEIDRLTEFDVLTGQTVAERNHIGIFPASHYVTTGPKLRRAVSSIEQELQERLQVLKSEDKLLEAQRLKQRTEYDLEMMQEVGYCSGIENYSRHMSARNPGDPPFTLLDYFPDDFLLMIDESHVTVPQLRAMYNGDRARKTTLVDYGFRLPSALDNRPLTFDEFTERINQVIYVSATPSAYELGAQTNLAEQIIRPTGLLDPSIEVRPIEGQIDDLLGEIHKREEVDERVLITTLTKKMAEDLTDYLKEVGVKVRYLHSDIATIERAEIIRDLRAGVFDVLVGINLLREGLDMPEVSLIAILDADKEGFLRSETSMIQVIGRAARNAHGHVIMYADRMTKSMKHAIDETNRRRKIQQTYNEEHGIIPKTVQKKVKDLIDLTKVEEGSSSYDVTHNTKELSDDALYQQIIDTEKDMKRAAEALEFEEAALWRNQLATLKQQWNDRFGSRSHMAMKQKKSGKNRINRELKKKV*	common_virus_hmm	common_virus	C52	47444	750499	797943	GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote_CDS_0001	persistent	direct	high	2105	1.0	GCA_001717505.1_00762
GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote	cenote	CDS	752753	753073	GCA_001717505.1	CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505.1_CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505_1_1	GCA_001717505_1_1@C52	2255	2575	GCA_001717505_1_1_721	GCA_001717505_1_1_721	-	1274073	.	.	hypothetical protein	MIENEKKTNFEEEPRVMSTHDVKDYEGITLNEQGEEDYQAEGTWENSHAQVRVIRINDLPLWKKVLYGIVVIGVLIALAIFAWFAFLWFGVIAVVGSILYFLRRLL*	.	hypothetical_protein	C52	47444	750499	797943	GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote_CDS_0002	persistent	direct	high	320	0.997	GCA_001717505.1_00763
GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote	cenote	CDS	753070	754515	GCA_001717505.1	CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505.1_CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505_1_1	GCA_001717505_1_1@C52	2572	4017	GCA_001717505_1_1_722	GCA_001717505_1_1_722	-	1274073	.	COG0064	Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit [Translation, ribosomal structure and biogenesis]. 	MKYEAVIGLEVHTELQTATKIFCNSKTSFGAPPNTNVSPVCLGLPGVLPVLNKKVLEFAVRAGLALNCEIARFSKFDRKNYYYPDLPKNFQTSQFDLPICKEGYLDVEVDGEVSRIRITRAHMEEDAGKLVHHGDSITTADYSLVDYNRTGTPLLEIVSEPDIRSAKQAVAYMEKMRAILQYCGISDCRMEEGSLRCDANISVRPVGQKELGTKTEIKNINSFKGVEKAIEYEAIRQAKILEAGGTIKQETRTWDEKEGVTKSMRSKEEANDYRYFPEPDLVPFTVSDEYIEKIRQTLPELPDARKARYMESFGLSSYDADYLTNDKARADYFEAMVKAGAEPKEACNWLMGEFAGKLSENGIEITESPVTPEGLAALLTLISKGTISGKIAKQVFPEMWETGKAAEEIVKEKGLIQISDTSELEAIVMEVIQANPKSVEDFKAGNKKAVGFFMGQIMKATKGKANPRVVSGMVMKKLQEL*	mmseqs_cdd	nonviral_gene	C52	47444	750499	797943	GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote_CDS_0003	persistent	direct	high	1445	0.999	GCA_001717505.1_00764
GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote	cenote	CDS	754518	755969	GCA_001717505.1	CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505.1_CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505_1_1	GCA_001717505_1_1@C52	4020	5471	GCA_001717505_1_1_723	GCA_001717505_1_1_723	-	1274073	.	TIGR00132	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit. In many species, Gln--tRNA ligase is missing. tRNA(Gln) is misacylated with Glu after which a heterotrimeric amidotransferase converts Glu to Gln. This model represents the amidase chain of that heterotrimer, encoded by the gatA gene. In the Archaea, Asn--tRNA ligase is also missing. This amidase subunit may also function in the conversion of Asp-tRNA(Asn) to Asn-tRNA(Asn), presumably with a different recognition unit to replace gatB. Both Methanococcus jannaschii and Methanobacterium thermoautotrophicum have both authentic gatB and a gatB-related gene, but only one gene like gatA. It has been shown that gatA can be expressed only when gatC is also expressed. In most species expressing the amidotransferase, the gatC ortholog is about 90 residues in length, but in Mycoplasma genitalium and Mycoplasma pneumoniae the gatC equivalent is as the C-terminal domain of a much longer protein. Not surprisingly, the Mycoplasmas also represent the most atypical lineage of gatA orthology. This orthology group is more narrowly defined here than in Proc Natl Acad Aci USA 94, 11819-11826 (1997). In particular, a Rhodococcus homolog found in association with nitrile hydratase genes and described as an enantiomer-selective amidase active on several 2-aryl propionamides, is excluded here. It is likely, however, that the amidase subunit GatA is not exclusively a part of the Glu-tRNA(Gln) amidotransferase heterotrimer and restricted to that function in all species. [Protein synthesis, tRNA aminoacylation]	MSYTIHELHEKLINKEISSVELTKQFIAHRDKVEADVHAFLSTTDEEALKQAAAVDAKIAAGEEISMLAGIPGAIKDNICVKGQKCTAASKMLEDWVSPYNATVIERLMAEDYVSIGKTNMDEFAMGSSTENSFFGPSKNPWNVDYVPGGSSGGSAAAVAAGEAVWTLGSDTGGSIRQPASFCGLVGLKPTYGLVSRYGLIAFASSLDQIGPITKDVTDAAIVLNSIAGHDERDSTSIPQEKVDYRDALVDDVKGMKIGIPKEFFGEGIKAETRAAIDKAIEFYKKAGAEIIPVSIPHVKSGVSIYYIIAPAEASSNLARYDGVSYGFRADGDNIVDMYINTRNQGFGMEVKRRIMLGNYVLSAGYYDAYYKKALKVRRLLKEAFDKAYEQCDVLLAPSASGTAFRFGAFTDPLALYMEDICTVPVNLAGLPSISIPVGFHDGLPLGMQIIGPTLGEKKILRAAYAFEQNHPEFTKTAPKGEM*	mmseqs_cdd	nonviral_gene	C52	47444	750499	797943	GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote_CDS_0004	persistent	direct	high	1451	0.999	GCA_001717505.1_00765
GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote	cenote	CDS	755981	756265	GCA_001717505.1	CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505.1_CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505_1_1	GCA_001717505_1_1@C52	5483	5767	GCA_001717505_1_1_724	GCA_001717505_1_1_724	-	1274073	.	COG0721	Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit  [Translation, ribosomal structure and biogenesis]. 	MKITTEEVKKIALLSRLSFSEDELENLKDSMSGILTYMEELKQYDTEGVAPMAHAVEQFNVMREDIPDTSFTHEEALMNAPEQEDGYFKVKRII*	mmseqs_cdd	nonviral_gene	C52	47444	750499	797943	GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote_CDS_0005	persistent	direct	high	284	0.996	GCA_001717505.1_00766
GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote	cenote	CDS	756395	758419	GCA_001717505.1	CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505.1_CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505_1_1	GCA_001717505_1_1@C52	5897	7921	GCA_001717505_1_1_725	GCA_001717505_1_1_725	-	1274073	.	PDB:5TT5_A	DNA-ligase	MASETVVRKIEKLRKEIHYHSYLYYVKDQPEITDYEFDKLYRELVDLEKEYPELITSDSPTQRVGGKATDDFDKVKFKKPMLSLSNAFNAEELHDFHRRVTGGLGDAKVEYITELKIDGLSMNLVYENGRFVQGLTRGDGKVGEDVTANVKTIKTIPLFIENAPKYMEVRGEVYMPRQSFIRLNKARDESGDMPFANCRNAAAGSLRQLDPQVTAGRNLDFFAYGLGSIEGMEITSQAQLLAQLERFHFHVNPHYKKWNSIEEVIQEVNQWQDSRRTLEYDTDGLVIKVSDFAQQERLGATGKDPKWAIAYKYPPEEAVTKVERIVVTMGRTGVLTPSADLVPVRLAGTVVKRATLHNMDFIREKDIRIGDTVRIYKAGEIIPEVAAVEKDKRNGSETPFEMPTQCPICNSTVARIEGEAAYRCVNPTCGGVVREKLIHYASRNAMNIEGMGPSVIDSLLAYELVKDPADLYTLKAEDIAQIERMGEKSSNNLVASIASSKTRGLAKLLFGLGIRYLGEKGAELLAATYQNIESIMQAEQDSLLQVEGIGQVIAESVHQYFHDEKNIDLINRLQRAGVVTEEVKEIQLGGAFNGEMVVLTGKLSSIGRKAAGERIKQLGGQVQSAVTNSTTLVVAGQDAGSKLTKAREKGIMIIDESTFMVRAGLIDARNTSVE*	common_virus_hmm	common_virus	C52	47444	750499	797943	GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote_CDS_0006	persistent	direct	high	2024	1.0	GCA_001717505.1_00767
GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote	cenote	CDS	758539	760830	GCA_001717505.1	CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505.1_CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505_1_1	GCA_001717505_1_1@C52	8041	10332	GCA_001717505_1_1_726	GCA_001717505_1_1_726	-	1274073	.	PDB:1UAA_B	Replicase	MFVYGSSYEYLTVIESVYDTWQIGGWDMADFLNGLNKEQRAAVEQIEGPLLIMAGAGSGKTKALTCRIAYMLKQGINPRKILAITFTNKAAQEMRERVHSLVGAEAEHIWMYTFHSFGARFLRSEIEKYPPYNSQFTIYDSDDSKQLIKNILKEMNLDDKQFQPSSIQSHISGAKNRLLTAKAFRASIGDNFFAQRIADIYDRYDAEMKQNNALDFDDLLLVTTSLLQKKEIRTKWQDRFHYILIDEYQDTNHAQYLMAKYIAGDRQNICVVGDADQSIYSWRGADIRNIIDFKKDYADAKIIKLEQNYRSTDTILKAANAVIKNNTDRPPKKLWTENEKGALIQRFEAMDEHEEADFIVSSMKKEHDTNHIPYGDMAILYRMNAQSRILEESLVRKGIAYAMVGGVRFYDRAEIKDIMAYLKVLGNSRDTVSLQRIINVPKRGIGNTTVEKLMAFAEEQGISLFEAIMAVEESSLTKGTKDKVQKFSALIFSLINAAAEGDVFHLIETVMAETGYLHMLREQQDPQAQSREENLGELLSVAKDFTRNNPDGDLIAFLEQVALVNDVDNYEGENEKVTLMTLHSAKGLEFPIVYMAGLDEGVFPGARSLMDESAVEEERRLCYVGITRARKKLYITNTRMRTMYGQLKPYTPSRFLDEIPFSLVEEIKVEEEQRRKTKVMHRYNRFASEKALSTAAYSGVPKSKSKTARYDWKEGDKVVHKLWGHGVVVAISGEGKSMTLKLQFPGQQVRQVMVAFAPIEKEE*	common_virus_hmm	common_virus	C52	47444	750499	797943	GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote_CDS_0007	persistent	direct	moderate	2211	0.965	GCA_001717505.1_00768
GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote	cenote	CDS	760864	761808	GCA_001717505.1	CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505.1_CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505_1_1	GCA_001717505_1_1@C52	10366	11310	GCA_001717505_1_1_727	GCA_001717505_1_1_727	-	1274073	.	COG1227	Inorganic pyrophosphatase/exopolyphosphatase [Energy production and conversion, Inorganic ion transport and metabolism]. 	MSKVIVIGHKSPDTDSIGAAISYSYLQRQMGVEAIAGRAGELNKESKFALEYFGVEAPEFISSVARKSESDEKQKVILVDHNESKQCVDGIQDAEVIEVVDHHRLGDFETSNPIFMLFCPVGCVNTIIYNLYKMRGIQPTKAVAGMMLSAIISDTVLFRSPTTTDKDREAVKELAELAGVDYEQYGMEMLKAGADISDYSAEQLASNDRKEFESAGNTFTVGQISVMDVAPINAKKDAIMAVLEKNKAEKGYVASYLMVTDILAEDTFLWFTDGAQEIVEAAFEKKADNQCVYLPKVMSRKKQVSPPLINAYAK*	mmseqs_cdd	nonviral_gene	C52	47444	750499	797943	GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote_CDS_0008	persistent	direct	high	944	0.999	GCA_001717505.1_00769
GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote	cenote	CDS	761987	762775	GCA_001717505.1	CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505.1_CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505_1_1	GCA_001717505_1_1@C52	11489	12277	GCA_001717505_1_1_728	GCA_001717505_1_1_728	-	1274073	.	COG1187	16S rRNA U516 pseudouridylate synthase RsuA and related 23S rRNA U2605, pseudouridylate synthases [Translation, ribosomal structure and biogenesis]. 	MRLDKFLSDMNKGTRKELKRLVRQGRVAVNGVTATNSGMAVNESDCIEVDGESVVYAKYEYYVMNKPQGVITATEDSRQDTVLDLMEENRRKDLFPVGRLDKDTVGLLLITNDGDLNHRLLSPKKHVDKEYVAKISGRVTEEDVKIFAKGVFIEDGFRALPAELKILSYREKATEEDLLDVEQSNAPQKHLSQGITEISIVIHEGKYHQVKKMFHAIGKEVFFLKRIRMGTLLLDEELAEGTYRKLTADELSGLMRITCKEK*	mmseqs_cdd	nonviral_gene	C52	47444	750499	797943	GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote_CDS_0009	persistent	direct	high	788	0.999	GCA_001717505.1_00770
GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote	cenote	CDS	762842	763012	GCA_001717505.1	CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505.1_CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505_1_1	GCA_001717505_1_1@C52	12344	12514	GCA_001717505_1_1_729	GCA_001717505_1_1_729	-	1274073	.	.	hypothetical protein	MGNKKVDIVEISAIISELDCQSILDQHPVLGFQRWILSSTHPAILVYQKKMGVSKK*	.	hypothetical_protein	C52	47444	750499	797943	GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote_CDS_0010	.	unmatched_CDS	none	0	0	.
GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote	cenote	CDS	763063	764535	GCA_001717505.1	CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505.1_CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505_1_1	GCA_001717505_1_1@C52	12565	14037	GCA_001717505_1_1_730	GCA_001717505_1_1_730	-	1274073	.	NF033678	C69 family dipeptidase. Members of the MEROPS C69 family (subfamily 001) are dipeptidases (EC 3.4.13.-).	MACTTILVGKKASYDGSTMMARNEDSPSGVFTSKKFIVVNPEEQPRYYKSVISKVEMDLPENPMRYTAMPDAPSKQGIWGEAGINEVNVAMSATETITSNPRVLGADPLVPGGIGEEDYVTIVLPYIRSAREGVKRLGMLHEQFGTYEMNGIGLQDKDEIWWFESIGGHHWIAKRVPDDRYVVVPNQLGIDYLDLVDAFGEQESCMCSADLLEFITENHLDLVRHEDGYCLKNERAFDVRAAFGSHDDSDHTYNTCRAWFMERYLNPNTYLWDGEDADFTPESDDLPWSMVPEKLITVEDVKYVLSAHYQGTPYDPYAKHGCHTKKNKYRVIGINRNNFVALTQLRPYMPKEIMAVQWIAEGCNVFNAFVPFYANITKTPEYIANTTAEVTTENFYWANRLIGTLADAHFQTTAIFIERYQNQVHSKGHALLSKFDKQFMTEKPNQVQHFLEGCNEEMAKMAKEETQKTLSSVLYTASNGMKNSFARSDA*	mmseqs_cdd	nonviral_gene	C52	47444	750499	797943	GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote_CDS_0011	persistent	direct	high	1472	0.999	GCA_001717505.1_00771
GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote	cenote	CDS	764609	765091	GCA_001717505.1	CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505.1_CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505_1_1	GCA_001717505_1_1@C52	14111	14593	GCA_001717505_1_1_731	GCA_001717505_1_1_731	-	1274073	.	.	hypothetical protein	MGQDIEKLLSAIRRYLDESDWYIFKYEDYFTLRALFILSRKRIYTYIDNTMEIFEQSKMGLVFYQIRRFYRKQCINPVSESLQKYLRRLFAPGLISGKQQESSDYSVYITRMGVTFLHEFGIRFDQRFRKDFSMVNIEYIEIPETEASMECAESLQNVFI*	.	hypothetical_protein	C52	47444	750499	797943	GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote_CDS_0012	persistent	direct	high	482	0.998	GCA_001717505.1_00772
GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote	cenote	CDS	765093	765287	GCA_001717505.1	CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505.1_CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505_1_1	GCA_001717505_1_1@C52	14595	14789	GCA_001717505_1_1_732	GCA_001717505_1_1_732	-	1274073	.	.	hypothetical protein	MGECMEENWESFIESILLAGERIRSFSIAKKTGTIYILFQRGEFAYLPIRIADHRTIFFCESNL*	.	hypothetical_protein	C52	47444	750499	797943	GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote_CDS_0013	cloud	direct	moderate	183	0.938	GCA_001717505.1_00773
GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote	cenote	CDS	765420	768437	GCA_001717505.1	CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505.1_CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505_1_1	GCA_001717505_1_1@C52	14922	17939	GCA_001717505_1_1_733	GCA_001717505_1_1_733	-	1274073	.	PDB:3H1T_A	Type-I-site-specific-restriction-modification-protein	MSEVRQEYKTIAEMTNGIILANFKKSNYVGETSYQTEAQLEANMIENLVSQGYERLVINSQEELYANLKVQIERLNGVEFTSAEWGRFLQEYLDAPNDGMIEKTRKVQENHIYDFIFDDGHLKNIKIIDKKNIHNNFLQVTNQVQQTGSHHNRYDVTVLVNGLPLVHIELKKRGVNLHEAFNQIHRYSKESFNIENSLYKYVQIFVISNGTYTRYFANTTAQNKNNYEFTCEWADARNQVIRDLEDFTRTFFEKRVLLEVLTKYCIFDCNNTLLVMRPYQIAATERILWKIKSSYENKRAGTTGAGGFIWHTTGSGKTLTSFKTARLATALDFIDKVFFVVDRKDLDYQTMKEYQKFQENSVNGSKDTKELKRSIEKDDDRIIVTTIQKLNEFVKKNPVHEIYDKHCVLIFDECHRSQFGDAQKNIRKAFNKYYQFGFTGTPIFPENSIGGDTTAGIFGAQLHSYVITDAIRDGKVLKFKVDYNNITPFSKSAEKEKDDKKLAKLEKKLLLHPERIAEITKHILTIFNTKTHRNEFYNVKERRLNGFNAMFAVQSVEAAKSYYEEFEKQQAELPKEKRLKVTTIYSFAPNEEQTAIGEISEENFDVSAMNSSAKEFLDKVISNYNQSFQTNYSTQGNEFQNYYKDLSQRVKNKEVDLLIVVGMFLTGFDAPTLNTLFVDKNLRYHGLIQAFSRTNRILNKVKAFGNIVCFRDLQQATEDAIKTFGDENSVNVILEKSYSEYIEGFKDEETGRFVKGYKDLCNEIICKFPDPTSIILDSEKKEFAELFGELLKAENVLKNFDEFESFETIISERQMQDMKSVYVDIRERVLLSQCQSVSDEEQVDFSDIEFQIDLLKTDEINLDYILALILDKSKEHNDIESLKAEVRRVIRSSLGTRAKEELVIDFINQTNLSELKNTDDILESFYSFAKKEKENTVNKLVEDERLKEISKRFINRAINKGYVEYAGDELDQIIPPTSRRQGAREKKKESVLEKIKRIVEVFIGI*	common_virus_hmm	common_virus	C52	47444	750499	797943	GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote_CDS_0014	cloud	direct	high	3017	1.0	GCA_001717505.1_00774
GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote	cenote	CDS	768442	769527	GCA_001717505.1	CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505.1_CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505_1_1	GCA_001717505_1_1@C52	17944	19029	GCA_001717505_1_1_734	GCA_001717505_1_1_734	-	1274073	.	pfam13166	AAA domain. This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease.	MEEYNSLKKIAQKIRGSNKKVTLLYAFNATGKTRLSMEFKNLVNEYKEDEIIKHVIYYNAFTEDLFYWDNDLENDSDRKLKINKNSSFIRMIEEQGKEKQIAQKFQEFTSSKIEPHINTSTGEITFSLPTGDKEAVDNIKISKGEESIFIWAVFFVLMETIIAELNIDEISDRSTDEFNAIQYIFIDDPISSLDDNHAIDIALALKETMNSSENENLHFIVSTHHALFYNVLHTELKKAQKLWLSRDGNKYILDKLDENKTPFGYHLLLKKEIKKAIANNMIKRYHFNLMRNLLEKTAHFLGYDSWKDLINEDDKDAYVKRINLYSHSNHSVLEAKILEPHEKQFLKRIFEKFLKEYKWKE*	mmseqs_cdd	nonviral_gene	C52	47444	750499	797943	GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote_CDS_0015	cloud	direct	high	1085	0.999	GCA_001717505.1_00775
GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote	cenote	CDS	769547	770113	GCA_001717505.1	CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505.1_CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505_1_1	GCA_001717505_1_1@C52	19049	19615	GCA_001717505_1_1_735	GCA_001717505_1_1_735	-	1274073	.	cd17272	Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to S.Eco2747II TRD2-CR2 and S.Eco2747AII TRD2-CR2. Escherichia coli ST2747 S subunit (S.Eco2747II) and Escherichia coli ST2747A s SUBUNIT (S.Eco2747AII) recognize 5'... GAANNNNNNNTAAA ... 3'. Generally The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains mainly TRD2-CR2. It may also include TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases and type I DNA methyltransferases.	MWDKKFNGVEKFKQNKTIKYHYYLSNELKELSSEKGTIKVLTTNKTELYAIEERVKNNISEGEIVCIPWGGNPIIQYYNGKFITGDNRIATSLDTETLNNKFLYHSLLNKIDLIASFYRGSGIKHPHMYKILELEIPIPSIKVQNYVVKILDQFETLVKDIKQGLPKEIELRQKQYEYYRDRLLSFKT*	mmseqs_cdd	nonviral_gene	C52	47444	750499	797943	GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote_CDS_0016	cloud	direct	high	566	0.998	GCA_001717505.1_00776
GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote	cenote	CDS	770209	771480	GCA_001717505.1	CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505.1_CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505_1_1	GCA_001717505_1_1@C52	19711	20982	GCA_001717505_1_1_736	GCA_001717505_1_1_736	-	1274073	.	PDB:2AR0_B	Type-I-restriction-enzyme	MSSILELLKNEKVEWKKLGEVSVISKGKQFNKRDMLENGKYPVINGGILPSGYIDLCNCNKDTITVSQGGASAGFVNFIKEKFWLGAHAFSIIPNKNILIEWDYQYYYFNKFLFHILKMNQVNLQHLKEGAGIPSVSKDKLSNIEIPLISKETQEKIVEILDNFTNYVTELQTELQTELQSRTHQYSYYRDLLLSDGYLNKLSEKIDGFDGMNNISYEKLIKLCVRQKGIPITANRMKEINQVGAPIRIFAGGNTVADVRLEEVNEEDIINKPSIIVKSRGNIDFEYYDKPFTHKNEMWSYSTLDSNILNIKFLYYFLKNNIKYFRDSSTVGKLPQISIGITDNYKIPIPNIWIQNKVVKILDKFQSLLADTQGLLPQEIEQRQKQYEYYREKLLTFAFECDSKQASKQASKQASKQASKQAR*	common_virus_hmm	common_virus	C52	47444	750499	797943	GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote_CDS_0017	cloud	direct	high	1271	0.999	GCA_001717505.1_00777
GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote	cenote	CDS	771473	772474	GCA_001717505.1	CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505.1_CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505_1_1	GCA_001717505_1_1@C52	20975	21976	GCA_001717505_1_1_737	GCA_001717505_1_1_737	-	1274073	.	pfam13310	Virulence protein RhuM family. There are currently no experimental data for members of this group or their homologs. However, these proteins are implicated in virulence/pathogenicity because RhuM is encoded in the SPI-3 pathogenicity island in Salmonella typhimurium.	MKNNIILYNTEDGKAKIELHVENETVWLNQLEMAELFQTSKQNISKHIKAILEDGELDEESTVNYKLTVQNEGGRNISRNIAYYSLDMILAIGYRVRSPRGIQFRNYASTILKEYLIKGFAIDDNRLKNLGVSSYFKELLDRIRDIRSSEKVFYRQVLDLFATSIDYCSHSDDAKLFFATIQNKMHFAIHHHTASELIYERVDSAKEFMGLTVFQGELPTLKEAKTAKNYLSEKELKSLNTLVSGFLEFAERQAQKQIVMTMNDWLQYTDKVLSITGEELLVGNGSISKEQANKKVQTEYRRYQHNTLTQVEKDYLNEIKAIEKKAKEGGKNE*	mmseqs_cdd	nonviral_gene	C52	47444	750499	797943	GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote_CDS_0018	cloud	direct	high	1001	0.999	GCA_001717505.1_00778
GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote	cenote	CDS	772464	774047	GCA_001717505.1	CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505.1_CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505_1_1	GCA_001717505_1_1@C52	21966	23549	GCA_001717505_1_1_738	GCA_001717505_1_1_738	-	1274073	.	TIGR00497	type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). [DNA metabolism, Restriction/modification]	MSNYTGESNGAAQRAELHRKIWAIADDVRGAVDGWDFKQYILGILFYRFISENITEFFNAAEHEVGDLEFNYADLSDEEAEKDFRPGTVEDKGFFILPSQLFENVVKNAKTNENLNIDLTNIFKAIEGSAVGSASEEDIKGLFDDVDTTSNRLGGSVPEKNKRLVDILTGIAGINFGNFKDNDIDAFGDAYEYLISNYASNAGKSGGEFFTPQTVSKLLSRLVMDGKDKINKVYDPTCGSGSLLLQMKKQFDEHIIDEGFYGQEINMTNFNLARMNMFLHNVNYNHFSIERGDTLLHPRHGEEKPFDAIVSNPPYSIKWIGDADPTLINDERFAPAGKLAPKSYADYAFIMHSLSYLSSKGRAAIVCFPGIFYRRGAEKTIRKYLVDNNFIDCVIQLPENLFYGTSIATCVLVMAKNKTENKILFIDASKEFKKETNNNILEEKNIEAILHAFRNRKDTKYFSRYVELSEIEENDYNLSVSTYIEKEDTREKIDIKVLNKQIEETVSKIDELRASINEIVKELENEE*	mmseqs_cdd	nonviral_gene	C52	47444	750499	797943	GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote_CDS_0019	cloud	direct	high	1583	0.999	GCA_001717505.1_00779
GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote	cenote	CDS	774337	775128	GCA_001717505.1	CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505.1_CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505_1_1	GCA_001717505_1_1@C52	23839	24630	GCA_001717505_1_1_739	GCA_001717505_1_1_739	-	1274073	.	.	hypothetical protein	MGFDITYHPISVEQMTQWYFSKLLDVADGNIAALEKIGEEYHLKPFFMNEYIDTMRVASKVEENIAFEKLHVFYIAIVQGYFSPYYYTRGTAFSFLMDDKPQMKKYVTPWEQLKPDFIHSPVNGGLVENYSGGVYIAPEQVVQLLDDYEKQEETRKIIDDFYVQNLPVFIKALQYAKENNLGLLEASEVVEPNPLDLNNSESYSNLLNCDTEGALIYEKIALKQLGRFIQESEKNKEQSNLSTKIKNGIQNLLKKLPFGKNKE*	.	hypothetical_protein	C52	47444	750499	797943	GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote_CDS_0020	persistent	direct	high	791	0.999	GCA_001717505.1_00780
GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote	cenote	CDS	775158	776246	GCA_001717505.1	CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505.1_CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505_1_1	GCA_001717505_1_1@C52	24660	25748	GCA_001717505_1_1_740	GCA_001717505_1_1_740	-	1274073	.	pfam14025	Protein of unknown function (DUF4241). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 205 and 315 amino acids in length. There is a conserved GDG sequence motif at the C-terminus.	MGFFNFGKNKDIKETNHTSWESCHKAQPNMYEKDGKRYMFFTLKEGVDTVLCLQPAEVYSVDKPEEVEYRLLLLSTTEDTLIGNLPFYKSVRFLKDYVVEDKFPLVLLRGLTLEDMKIFVQNMEVALQEEQTIREICEQTDELLQAETIAPETVEAVFHSRHVKTYTFEQVYFPSGTLMAADPICELQSMYVPVIKETIPSGYYPITIGILDSELVGIRMTGMRLKVTEEEALSYQAATMYKAKDKKEFRAAFPVDAGMSTFCDKEAAESYWKVLYAWYKEHPNGNWYNDYLADLFKESAEAYPDLQREGGDFIRFKIPESNNEIVMVATGFGDGIYQVFWGVDKNGKRCELVTLFVDPRKA*	mmseqs_cdd	nonviral_gene	C52	47444	750499	797943	GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote_CDS_0021	persistent	direct	high	1088	0.999	GCA_001717505.1_00781
GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote	cenote	CDS	776288	777532	GCA_001717505.1	CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505.1_CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505_1_1	GCA_001717505_1_1@C52	25790	27034	GCA_001717505_1_1_741	GCA_001717505_1_1_741	-	1274073	.	.	hypothetical protein	MDWMKIITDSGNIFLGSILFISLTIIGVYLYLLSKYNRVGDARFDVFYIEDGTFIINSLWKPTFSLDDIERVEVGYAPYHRHGRPYIGFLRIVYPNGNRSCRYYFDISVVTRKVFNFKYHQDDIFRAIHRVQSDLEKEGIPYTLLGFEYLGWKELIAGSMKNQFLYKRDKYITNIILFVWFTGLLCSFTYLGIEFWKENSFIKGTFFILAAFLLLALMENSAWNIFQNSRIQVAVHALPTTEKEILRTVGAISTYDDSLMMEMSKCIAEPGDYIEKQIANGIDGEYAYPPLYTAEDGLTREKQIARVGMTLLHQTSYTMFLLKNIKRDTFLSLLRELVLFKRYELSVESYQLKDEDSLLTWCKTLNKLWKPQSVTIELIRINNYSYWGYLKYFKAPQMDSREKYDRVFFEYFDD*	.	hypothetical_protein	C52	47444	750499	797943	GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote_CDS_0022	persistent	direct	high	1236	0.993	GCA_001717505.1_00782
GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote	cenote	CDS	777609	778085	GCA_001717505.1	CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505.1_CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505_1_1	GCA_001717505_1_1@C52	27111	27587	GCA_001717505_1_1_742	GCA_001717505_1_1_742	-	1274073	.	PF13719.6	zinc-ribbon domain	MISLDVISYLFDFLFGGDHLLATLFLIHSAYMIRKLFLYQNVVVDGKKVDEETVKGVKHTSQYVKYTLGVVVANFILMVYFDFIPIFIKSEFSSSFIWIAGFLLLLYGRTLLSFWLFWRCPHCGKVMDGELLSRHRWISRRPVIRENCPHCEKSILYY*	hhsuite_tools	hypothetical_protein	C52	47444	750499	797943	GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote_CDS_0023	persistent	direct	high	476	0.998	GCA_001717505.1_00783
GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote	cenote	CDS	778310	778516	GCA_001717505.1	CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505.1_CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505_1_1	GCA_001717505_1_1@C52	27812	28018	GCA_001717505_1_1_743	GCA_001717505_1_1_743	-	1274073	.	pfam13619	KTSC domain. This short domain is named after Lysine tRNA synthetase C-terminal domain. It is found at the C-terminus of some Lysyl tRNA synthetases as well as a single domain in bacterial proteins. The domain is about 60 amino acids in length and contains a reasonably conserved YXY motif in the centre of the sequence. The function of this domain is unknown but it could be an RNA binding domain.	MHLISVESSNVECIGYEDGVIEVHFNNGYVYQYTGTTSSLFDEFLNSESKGRFVHQRLKDNFPTIRIE*	mmseqs_cdd	common_virus	C52	47444	750499	797943	GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote_CDS_0024	persistent	direct	high	206	0.995	GCA_001717505.1_00784
GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote	cenote	CDS	778636	779073	GCA_001717505.1	CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505.1_CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505_1_1	GCA_001717505_1_1@C52	28138	28575	GCA_001717505_1_1_744	GCA_001717505_1_1_744	-	1274073	.	PF09986.9	Uncharacterized protein conserved in bacteria (DUF2225)	MLFSIDSAVIHVLVVGVPTFIFVIMAFITLMKSGKQAIRNIDFPVHVTCRVCGHSFTVTMEEYTKHVMAIRERRLFKINPLKEMRKVFCSKCGKETYCNWDNINAFSLRKHIPPLFIAMYVPVFKYMGMAALWICLCSVLFNIKL*	hhsuite_tools	hypothetical_protein	C52	47444	750499	797943	GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote_CDS_0025	persistent	direct	high	437	0.998	GCA_001717505.1_00785
GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote	cenote	CDS	779206	779751	GCA_001717505.1	CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505.1_CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505_1_1	GCA_001717505_1_1@C52	28708	29253	GCA_001717505_1_1_745	GCA_001717505_1_1_745	-	1274073	.	.	hypothetical protein	MAFLLVLGIIIAYISLLFFFKKKILDRSNYRGLNYIIGMMVAYAILLGITMLCNEYTWIKMAFQSTSTHIRINKEVLGMVLLLVPAGYSVVLLGYSKEQAKWKDKKIVMLSMALNGIFSFFGILLFDTYLHGVSGKEIYVMIKEIPDFIDWKYMAGAALACIAFIQLMKYDHFKYNKEEKD*	.	hypothetical_protein	C52	47444	750499	797943	GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote_CDS_0026	persistent	direct	high	545	0.998	GCA_001717505.1_00786
GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote	cenote	CDS	779793	780050	GCA_001717505.1	CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505.1_CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505_1_1	GCA_001717505_1_1@C52	29295	29552	GCA_001717505_1_1_746	GCA_001717505_1_1_746	-	1274073	.	.	hypothetical protein	MKINGKNIKDISWEDIKNKELIEVFGLQPASYKEFKEYERGNTNFNLQLQSELYSLWKRYTITGNFNSHGSCYRYEVGAQYSLWE*	.	hypothetical_protein	C52	47444	750499	797943	GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote_CDS_0027	.	unmatched_CDS	none	0	0	.
GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote	cenote	CDS	780025	780174	GCA_001717505.1	CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505.1_CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505_1_1	GCA_001717505_1_1@C52	29527	29676	GCA_001717505_1_1_747	GCA_001717505_1_1_747	-	1274073	.	.	hypothetical protein	MKDQKVYGIVYLTPAWRDVAPLKDCIVTRVIIDNREKNDWKCENQRKKY*	.	hypothetical_protein	C52	47444	750499	797943	GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote_CDS_0028	.	unmatched_CDS	none	0	0	.
GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote	cenote	CDS	780262	780810	GCA_001717505.1	CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505.1_CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505_1_1	GCA_001717505_1_1@C52	29764	30312	GCA_001717505_1_1_748	GCA_001717505_1_1_748	-	1274073	.	.	hypothetical protein	MESFILAVCFGGFTLGLFLFTAFLYFLLVKAVQNKEEVPSWMYKIGHALKARVKNSYENTTNRQALQEVNMTLLLFIVLNGIVFFIQYSKGVGIPASIYFCLKTEFIMVLGVEFLTSIIKLLMVRPLHVYASANAVQGMLVISSFALLLFLNMTGFPEKAPRIEFNGSTVIIGETKAEELLA*	.	hypothetical_protein	C52	47444	750499	797943	GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote_CDS_0029	cloud	direct	high	548	0.998	GCA_001717505.1_00787
GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote	cenote	CDS	780916	781062	GCA_001717505.1	CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505.1_CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505_1_1	GCA_001717505_1_1@C52	30418	30564	GCA_001717505_1_1_749	GCA_001717505_1_1_749	-	1274073	.	.	hypothetical protein	MTARYFIKHGVHQVELVKFYNDVTTIYSGGIDYKKQKRFEIKHMDNQI*	.	hypothetical_protein	C52	47444	750499	797943	GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote_CDS_0030	cloud	direct	high	146	0.993	GCA_001717505.1_00788
GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote	cenote	CDS	781373	782770	GCA_001717505.1	CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505.1_CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505_1_1	GCA_001717505_1_1@C52	30875	32272	GCA_001717505_1_1_750	GCA_001717505_1_1_750	-	1274073	.	.	hypothetical protein	MLLIILVLRLYSRIPYIDEGEQYFYIIVLKQGRLKCMKWMRHINQLDIENFTIVAIVIFFIILYVSIFMVRSKYWEKTFTSWLKNFLIAELIGMSFIFVAAFLFMMAIHSLYPFVALIGFITVFIFILWGSLFFINAKAKEWKRNHPDYAVLVLGKKESIFRLEKVELLSLDKTSIQKEFACITAETITNLPGAASLKILLTPGRHLLELSWQQRHSYRYSDLMSELLRQELQIIVQPGRTYYIPIPEEDSGFKIQNLNERPQDLKEKKNRWQWREHYIPLILAAHAWVAFFLVGEQDGDMYSAAIYLSNWILQFAIGLAACLFSWYFFLHIQLLSRKGKFLYSIPFILITTLFLSSYGLRGLYAMQDSFEKPQTVTMAVTDLDIGYILRFDYYEGVYLEEKQACIYYHGNYYVINRGLAWAIESQFDFPLTEEQKLSLEFYPHTKIVHAYSFNKSHSSLHPMNQ*	.	hypothetical_protein	C52	47444	750499	797943	GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote_CDS_0031	cloud	direct	moderate	1290	0.923	GCA_001717505.1_00789
GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote	cenote	CDS	782715	783512	GCA_001717505.1	CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505.1_CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505_1_1	GCA_001717505_1_1@C52	32217	33014	GCA_001717505_1_1_751	GCA_001717505_1_1_751	-	1274073	.	.	hypothetical protein	MKTYISSFLLLLGNMWIVKVIKNYNYWDSFYWYLVEVMLIVGIVILSDFFIVILLCHSEPKSTLKSYIDTQKQFGKSRQLAHLTLLLMITIFLLSDSINSYYSYQDVLGVNWSRWYIVSFLVKAISILVAGITYMWVYPTGYSCKYGKWYYLIPVMVITVVLGDIGLGAVNAVLDLNTPTKIIQVSANNMRVEKRIHRGNGWRYAIDDFKEYFIVYNGEKYFINHAMSNTISKQILEKRIYDKSLTLCVAYYPRSKIVQSYTLYR*	.	hypothetical_protein	C52	47444	750499	797943	GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote_CDS_0032	cloud	direct	high	797	0.999	GCA_001717505.1_00790
GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote	cenote	CDS	783576	784037	GCA_001717505.1	CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505.1_CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505_1_1	GCA_001717505_1_1@C52	33078	33539	GCA_001717505_1_1_752	GCA_001717505_1_1_752	-	1274073	.	.	hypothetical protein	MKNKTIKYLLYHIFLHSSCIFMIYSSCRFPAWGDWLINTRFLNYSFSLYIAMIIGIFPLFSILPYYYQHDFPHVSGRKKITLAALLIGNTLLILTYSAFIHTYLPNHLVHKNVLNDSSAYMMEFNEEVQRKFNEKMQSQLSDTTDKESLVSNH*	.	hypothetical_protein	C52	47444	750499	797943	GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote_CDS_0033	cloud	direct	high	461	0.998	GCA_001717505.1_00791
GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote	cenote	CDS	784410	784661	GCA_001717505.1	CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505.1_CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505_1_1	GCA_001717505_1_1@C52	33912	34163	GCA_001717505_1_1_753	GCA_001717505_1_1_753	+	1274073	.	PDB:2JES_G	Portal-Protein	MEFVEAWLGHKVDVEFIFNRDLPLNQADAINNCKNSIGVISKETVIANHPWTQNTADELKRIKEEEAQLIDDYVEDGGASDDT*	hallmark_hmm	common_virus	C52	47444	750499	797943	GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote_CDS_0034	cloud	direct	high	251	0.996	GCA_001717505.1_00792
GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote	cenote	CDS	784636	786153	GCA_001717505.1	CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505.1_CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505_1_1	GCA_001717505_1_1@C52	34138	35655	GCA_001717505_1_1_754	GCA_001717505_1_1_754	+	1274073	.	PFAM:PF06152.10	minor-capsid-protein	MVVQAMTHNEYWQKRFEELKDNQMKRAELTKREIKKLFRQALKESEKEILAWYQRYAEENNLTLPQAKKELNARERKDFQFTLEQYKELAQKQNLSPEYIKMLNNASMRVRLDRSQSLYLKLFYEIEKLANEYELNLKDLLAKTYEDSYYKTAYITQQVKGFEDVTALSSDRIEKTLSKPWTQDGKEFSTRIWGQKTQLIKSLQIEITQGLLTQRGTAFITERIAKKFNTSYSQASRLVETETAYFQERSMLDCFNDLEVEKLQIIATLDTKTSEICREMDTKIVELKDAIPGVTTPPFHCYCRTTTIPYIEGVTDAEGTTRTARDSKTGKSVAVKSDLTYEQWEDTYVANPKFAKMRMNLVAPTDEFIYQLAIEQGKPYTKGKVGEERFYADNGRPIYPPNNGGIGTPEKITLKSGEIIYSRYGKPTGSYVSPKDTSFEERAMPRTANTNDLHYYRVVKDIKDVERSVIAAWFGQKGLGIQLKLPSSVESLEENLKEVFINEPN*	hallmark_hmm	common_virus	C52	47444	750499	797943	GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote_CDS_0035	cloud	direct	moderate	1502	0.989	GCA_001717505.1_00793
GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote	cenote	CDS	786140	786397	GCA_001717505.1	CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505.1_CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505_1_1	GCA_001717505_1_1@C52	35642	35899	GCA_001717505_1_1_755	GCA_001717505_1_1_755	+	1274073	.	PF15597.6	Immunity protein 59	MNLIDLEKILTKENIWKYDYAIGTLNKPLSETPICLIKDKGGFVYLELERDKVVYKEVFDSEDKACKFYLTKYSRFEPRLKKYVN*	hhsuite_tools	hypothetical_protein	C52	47444	750499	797943	GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote_CDS_0036	cloud	direct	high	257	0.996	GCA_001717505.1_00794
GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote	cenote	CDS	786448	786837	GCA_001717505.1	CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505.1_CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505_1_1	GCA_001717505_1_1@C52	35950	36339	GCA_001717505_1_1_756	GCA_001717505_1_1_756	+	1274073	.	.	hypothetical protein	MFRTYKEILVKNGKLFVTVSGNRYVLAECEAKVELKEELQELPCLGNKKAVVRRFATLLITSKHKMKTVDISNIELISFNGEFLKNNKDSVILTFTQCLPIDELDLTEQGENSFEVICSNEIITKLMAL*	.	hypothetical_protein	C52	47444	750499	797943	GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote_CDS_0037	cloud	direct	high	389	0.997	GCA_001717505.1_00795
GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote	cenote	CDS	786969	787493	GCA_001717505.1	CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505.1_CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505_1_1	GCA_001717505_1_1@C52	36471	36995	GCA_001717505_1_1_757	GCA_001717505_1_1_757	+	1274073	.	PFAM:PF06810.10	minor-structural-protein	MTREELKALGLSDEQIEKIVDDYGKNYVSKSQFNQKNEEAKHLKGEADTFKKEIEELKKTNKDNADLATQIEKMKEDAKTREQTYKANTKKMQIDSLVDLALVKNKAKNSKAVKALLVDLDKAKIIDGAIKGLISIHASAKDAWIEYIVKICGYIIIFNKYLNKTILFKLFPLY*	hallmark_hmm	common_virus	C52	47444	750499	797943	GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote_CDS_0038	cloud	direct	high	524	0.998	GCA_001717505.1_00796
GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote	cenote	CDS	787592	788740	GCA_001717505.1	CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505.1_CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505_1_1	GCA_001717505_1_1@C52	37094	38242	GCA_001717505_1_1_758	GCA_001717505_1_1_758	-	1274073	.	.	hypothetical protein	MSNLFLDFQKTKNMKLLKLDNKEKYYADLLNIEHSWSDRIDSNISNVFIMEAEQQLINSIELSTVMVFLADMPDCERNKFFDSWRSTKEFPTQGQIIKQLSLRGNIFLDMKEKMPTFFSDTKKLNAKINKYVHKQGFQHFYVVRNISMNVGKLQTELIEKFEYYLKKCIGVVAVMRLAIDPFPFLLMDNDILYRSFPLLTLPYSKEFVNEYIGYFVLEQYKQTEIFQGTYEWLKGCKKKNEATFNVTNYEYIDSTKIEFIIEQFELLSINAQYSVLLVASNEKVVKIYCLDGLLMYFTDRKTNRKETHWSSLDFSNFSKSDKLYNQAYGEAYISVFKFKDGSYFIEHNDFLVNEEIKQIDEYVKKNFKRLSSNFDNSFKFVR*	.	hypothetical_protein	C52	47444	750499	797943	GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote_CDS_0039	cloud	direct	high	1148	0.999	GCA_001717505.1_00797
GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote	cenote	CDS	789256	789804	GCA_001717505.1	CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505.1_CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505_1_1	GCA_001717505_1_1@C52	38758	39306	GCA_001717505_1_1_759	GCA_001717505_1_1_759	-	1274073	.	.	hypothetical protein	MQWNRHKEAKQTIKEIFQRLDRYRIIHYSCQSFNRVENGKSTIIAAIAIYLPQYDRTESFDIQSTAEYLNIEYKDINKNLEKIEKVLLKNFFEFIRKNTDQKYLHWNMRNSKYGFQALSNRYMALVHQKPEYEIPSDKCINIAAVLENYYGVGYVSDPKIKHLIEKNFNVRPGNLLYGEEEA*	.	hypothetical_protein	C52	47444	750499	797943	GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote_CDS_0040	cloud	direct	high	548	0.998	GCA_001717505.1_00798
GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote	cenote	CDS	789817	790842	GCA_001717505.1	CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505.1_CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505_1_1	GCA_001717505_1_1@C52	39319	40344	GCA_001717505_1_1_760	GCA_001717505_1_1_760	-	1274073	.	PDB:1UAA_B	Replicase	MDKRVIFAVAGSGKTTHIVKSLDADKRSLILTYTRGNYQNLKKKIIEKFHGKWPENITLMTYFEFLYSFCYKPFLADKIKAKGIVYEPNSKNYLKKENDRYYLSKSGYFYSNRIAFSFEHFGIIDDIKERIERYFDELIIDEIQDVSGRDFNFLLKIMEIEINIVFVGDFFQHTFDTSRDGNVNKNLFKSFIDYKEKFSSKGFIVDEDTLDKSWRCNKLTCSFIRDNLGINIYSHQSENRVNEILLLDDIELINQTLNDDNIIKLHYENSSKYGKNNKNWGETKGEDYYQDICIVLNQNTEEHFKNNTLDKLAPSTKNKLYVALTRARGNTYFISHKDLSK*	common_virus_hmm	common_virus	C52	47444	750499	797943	GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote_CDS_0041	cloud	direct	high	1025	0.999	GCA_001717505.1_00799
GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote	cenote	CDS	790827	792383	GCA_001717505.1	CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505.1_CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505_1_1	GCA_001717505_1_1@C52	40329	41885	GCA_001717505_1_1_761	GCA_001717505_1_1_761	-	1274073	.	COG3593	Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains [Replication, recombination and repair]. 	MGVTIEKIILTNYKRFENLTILPNERKNILVGDNEVGKSSIIDAIDLVAMGSVRRVESIGLDRLLNINSIKKFEETRKYEDLPEMKIELFLSGAFAHTMNGKNNSLGVKADGIRLVCAPDDHYITEINDYISSGMQVFPYEYYRIRFSTFADESYSTYKRKLKTVLINNTNMSSTHATNDFIERMYNQYTEDSLLERLEHSSQYRQMKFNFCQNHLAKLNQRVPADKDYLFGLENNFSNVFSQDLMIYEKDIAINNKGTGRQVLIKTDFALDRAGDNVDVVLIEEPENHLSHSNLKKLVSNISNKQEGQLFMTTHNSLISTGLDLNNLIVLSRGNTNKPLYLKDLNPETSSYFLKAPPAGILEFVLSSKVFLVEGPSEYILFDKFYKDVTKKTLEEDGVHVLAIRGLSFKRYLEVAKITKSKVAIVTDNDGDYQTKCVKKYENYLNSNINVFFEEENNKPTFEYFLFDNNKLACNEIFGSDALAYMLNNKTESALKLISVEQLKIPNYIKKAILWINE*	mmseqs_cdd	nonviral_gene	C52	47444	750499	797943	GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote_CDS_0042	cloud	direct	high	1556	0.999	GCA_001717505.1_00800
GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote	cenote	CDS	793024	793647	GCA_001717505.1	CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505.1_CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505_1_1	GCA_001717505_1_1@C52	42526	43149	GCA_001717505_1_1_762	GCA_001717505_1_1_762	-	1274073	.	.	hypothetical protein	MNESKLNSIKDIILGIVLLVIMGYISVWLLGILLDCIVNFIDRFNQVTSNIDAVVIVALITGSVSILGVVISSIVSKVIEYRQNTKRYLYEKREQPYVEFIEMVYKLQENVKKNRKYTEKEMLEDVFSFSKKLILWGSNDVIRKWLNFREISQIENRNPMDNIFMLEEIIFEIRKDMGQKKGGLKQGDILAFFVNDIKEHISTHKKK*	.	hypothetical_protein	C52	47444	750499	797943	GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote_CDS_0043	cloud	direct	high	623	0.998	GCA_001717505.1_00801
GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote	cenote	CDS	793837	794793	GCA_001717505.1	CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505.1_CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505_1_1	GCA_001717505_1_1@C52	43339	44295	GCA_001717505_1_1_763	GCA_001717505_1_1_763	-	1274073	.	pfam09556	HaeIII restriction endonuclease. This family includes the HaeIII (recognizes and cleaves GG^CC) restriction endonuclease.	MSNKSNNQGRAYEFSYLITLLEEISKIRPVKIEENSSYFAAERAWKTLTDSEKIIYKVSALAGVNTIFNLEPLILDDGDDEIELKIQSDDKGKLGDVRDVLIIRRGIKWEIGLSVKHNHFAVKHSRLSKNLNFGKKWYGIDCSEQYWKDIKPIFDYLDDEKQNGSKWSDLPNKEDDVYVPLLNAFKSELERQNNLFRKDIPKLMVEYLLGEFDFYKVIGIDNKRITQIQSYNLRGTLNKQGNKRKRSIELPVSTLPTRIVSLEYKPSSKNTLELYLDGGWQFSFRIHNASTKVETSLKFDIQIIGMPTTIVSIDCRWK*	mmseqs_cdd	nonviral_gene	C52	47444	750499	797943	GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote_CDS_0044	cloud	direct	high	956	0.999	GCA_001717505.1_00802
GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote	cenote	CDS	794840	795841	GCA_001717505.1	CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505.1_CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505_1_1	GCA_001717505_1_1@C52	44342	45343	GCA_001717505_1_1_764	GCA_001717505_1_1_764	-	1274073	.	PDB:3ME5_A	Cytosine-specific-methyltransferase	MDVISLFSGAGGLDLGFEKAGFNIVAGNEYDKTIWETYEKNHKAKLIKGDICNISSDQFPDCDGIIGGPPCQSWSEAGSLKGINDPRGQLFYQYVRILKDKQPKFFLAENVKGMMARRHNDAVKNIVSQFEGVGYDVFIHLLNASDYGVPQDRKRVFYVGFRKDLKVKFEPPKPYNSKLTFKDAIFDLKDSAIPALERNKTNGGNCKFLNHEYFIGAYSPIFMSRNRVRSWYKQAFTVQASGRQCQLHPQAPVMPKIGKNKHIFEPGKEALYRRLTVRECARIQGFPDDFKFYYTNLNDAYKMIGNAVPVNLAYEMAKSIIVALEEFKFNNKL*	common_virus_hmm	common_virus	C52	47444	750499	797943	GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote_CDS_0045	cloud	direct	high	1001	0.999	GCA_001717505.1_00803
GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote	cenote	CDS	796359	797219	GCA_001717505.1	CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505.1_CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505_1_1	GCA_001717505_1_1@C52	45861	46721	GCA_001717505_1_1_765	GCA_001717505_1_1_765	-	1274073	.	PRK11525	DNA-damage-inducible protein D; Provisional	MPNLKAKEYKKFEDIKYVREDGSEYWSARELADVLDYSQWRNFQNVIDRAMIACENSGHEVTYDFAEVSKIVEAGATRKSIKDYELTRYACYLIVQNGDPRKEVIALGQTYFAIQTYRQEIADHFNQLDEDRRRLVVRGDIKQWNQLLVETAHDAGVITNEEFAIFQNAGYMGLYGGLDVEDIHDRKGLTARQKILDYMGSTELIANLFRISQTEEKLRKDKVEGAEAATKVHYSVGKEVRSAIEKIGGTMPEDLPVPEKSIQQIEKEQMKRLKDKAKKGKLMLDE*	mmseqs_cdd	common_virus	C52	47444	750499	797943	GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote_CDS_0046	cloud	direct	high	860	0.999	GCA_001717505.1_00804
GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote	cenote	CDS	797262	797942	GCA_001717505.1	CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505.1_CP017037.1	GCA_001717505.1|CP017037.1	GCA_001717505_1_1	GCA_001717505_1_1@C52	46764	47444	GCA_001717505_1_1_766	GCA_001717505_1_1_766	-	1274073	.	PFAM:PF10544.8	homing-endonuclease	MMAKGIIYLMTTVVSGLIKIGKTGNDQFENRMRFLESNGYANITGLKREFAIEVDGYDDKEKLIHDIFSKSRIAGTELFALDIEIAKSLLASLDGKQIYPKDKSKKEVFKESTEEIKLKSDGGFIPDGDYVLNRNIKGFGKVNGKATVKDGVFKVLKGSLCGNTGKGYIPSIRRNAKIKDNILQEDIVCMNPSSAGWIVIGKSNNGWVEWKDLQGNSIEKYRDKEK*	phrogs_hmm	nonviral_gene	C52	47444	750499	797943	GCA_001717505.1|CP017037.1@region_750500_797943@tool_cenote_CDS_0047	cloud	direct	high	680	0.999	GCA_001717505.1_00805