core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_001747495.1|MKGI01000060.1@region_12868_26655@tool_cenote	cenote	CDS	12867	13163	GCA_001747495.1	MKGI01000060.1	GCA_001747495.1|MKGI01000060.1	GCA_001747495.1_MKGI01000060.1	GCA_001747495.1|MKGI01000060.1	GCA_001747495_1_2	GCA_001747495_1_2@C2	1	297	GCA_001747495_1_2_10	GCA_001747495_1_2_10	+	40597	.	PDB:5TIP_A	Major-capsid-protein	MEGKEILNKKNSLVNKHLCNFIESKFLREYHDQNGKIISQNEYAKLCGITSSTISKIKLPEGYNIPLSTIYNILRHERYSLEKFFKEFEDEKGINIPD*	hallmark_hmm	common_virus	C2	13788	12867	26655	GCA_001747495.1|MKGI01000060.1@region_12868_26655@tool_cenote_CDS_0001	infer_flexible	indirect	.	.	.	no_good_uniDB_hits
GCA_001747495.1|MKGI01000060.1@region_12868_26655@tool_cenote	cenote	CDS	13222	13371	GCA_001747495.1	MKGI01000060.1	GCA_001747495.1|MKGI01000060.1	GCA_001747495.1_MKGI01000060.1	GCA_001747495.1|MKGI01000060.1	GCA_001747495_1_2	GCA_001747495_1_2@C2	356	505	GCA_001747495_1_2_11	GCA_001747495_1_2_11	-	40597	.	.	hypothetical protein	MNTLKIYSFVSSVIVIGLSIWIYFLLKDLKETNEVLEQCSERYYMEINK*	.	hypothetical_protein	C2	13788	12867	26655	GCA_001747495.1|MKGI01000060.1@region_12868_26655@tool_cenote_CDS_0002	infer_flexible	indirect	.	.	.	no_good_uniDB_hits
GCA_001747495.1|MKGI01000060.1@region_12868_26655@tool_cenote	cenote	CDS	13919	14134	GCA_001747495.1	MKGI01000060.1	GCA_001747495.1|MKGI01000060.1	GCA_001747495.1_MKGI01000060.1	GCA_001747495.1|MKGI01000060.1	GCA_001747495_1_2	GCA_001747495_1_2@C2	1053	1268	GCA_001747495_1_2_12	GCA_001747495_1_2_12	-	40597	.	pfam13619	KTSC domain. This short domain is named after Lysine tRNA synthetase C-terminal domain. It is found at the C-terminus of some Lysyl tRNA synthetases as well as a single domain in bacterial proteins. The domain is about 60 amino acids in length and contains a reasonably conserved YXY motif in the centre of the sequence. The function of this domain is unknown but it could be an RNA binding domain.	MDRQYIESSMIASIGFDPNTSTLEIEFKKNGAVWQYYDFPESTYYEFIGSVSVGKFFLAHIKGQYSENQVG*	mmseqs_cdd	common_virus	C2	13788	12867	26655	GCA_001747495.1|MKGI01000060.1@region_12868_26655@tool_cenote_CDS_0003	cloud	indirect	.	.	.	GCA_000010505.1_00908
GCA_001747495.1|MKGI01000060.1@region_12868_26655@tool_cenote	cenote	CDS	14137	15906	GCA_001747495.1	MKGI01000060.1	GCA_001747495.1|MKGI01000060.1	GCA_001747495.1_MKGI01000060.1	GCA_001747495.1|MKGI01000060.1	GCA_001747495_1_2	GCA_001747495_1_2@C2	1271	3040	GCA_001747495_1_2_13	GCA_001747495_1_2_13	-	40597	.	PDB:4KFU_D	Genome-Packaging-Protein	MKTEITYLGHIIRVDSGTIEVEVSNEIPSAAPIINGRLYKIGQIGTFVKIPIGNITIYGIVSSVSNTPSKTDETLLKYSFGSRFLTVQLVGEKVGEDDFEKGIGTYPTINDEVHIVIEKDLFDIYGKKDAGSIEIGKHSSSENLSVYADLHRLILRHCAILGSTGSGKSNTTVSILKSILNGYKGSRIILVDPHGEYSSAFPEAKVLKINDPVNPLFIPFWLMSFDELAYFLVGAKPTDDQKPDYRLFRELVTNLKKENCNLKSGTVNPDFVTSDSPIPFSARKLWYEMNWWLNASFNTTKKDEQILDTTIKEDDGDAENLIGAKFTSHLSTNNNTPPYKSQHQEFYSYEKKILSRLKDSRFDFLFNPGEFKDADSNKDLHHLLNEWIGSDNKLSILDLSGVPFEVLDITVGLITRFVYDSMFWGRNEPYTGKNRPLLLAYEEAHNYLNKNENNSYSKTAVERVFKEGRKFGLGALVISQRPSEISETILAQVGTFIALRLTNSGDQSIVKSSAPDNLNSLIDLLPSLRTGEAIIVGEALKIPSRVRLKLNVPRPTSDDPKLVEKWQQEHPTNEENYKTVVTRIRQQKF*	hallmark_hmm	common_virus	C2	13788	12867	26655	GCA_001747495.1|MKGI01000060.1@region_12868_26655@tool_cenote_CDS_0004	cloud	indirect	.	.	.	GCA_013305725.1_01170
GCA_001747495.1|MKGI01000060.1@region_12868_26655@tool_cenote	cenote	CDS	15903	17096	GCA_001747495.1	MKGI01000060.1	GCA_001747495.1|MKGI01000060.1	GCA_001747495.1_MKGI01000060.1	GCA_001747495.1|MKGI01000060.1	GCA_001747495_1_2	GCA_001747495_1_2@C2	3037	4230	GCA_001747495_1_2_14	GCA_001747495_1_2_14	-	40597	.	pfam13289	SIR2-like domain. This family of proteins are related to the sirtuins.	MEKINLIREVRELKTHLSYSKNIGFFFGAGTSCALKIPNVEQLTKGIEAELKDENKANFIAIKEDLKTIITDRNVNIEDILNHIRRIREITGEVKTKSYQGVTGDSAKTLDVEICKIIYQIIAAKESVADISQTKKFFAWLSMLNRDFSKEIFTTNYDLIIEKSLEASQIPYFDGFVGSYEPFFWQESIDQFVSRNDLTQNWIRLWKIHGSLSWFWKIDPATKAQKIIRQGKIEKIEDEKNELVIYPSKEKYDSSKKQPFIAYFDRLKNYLLSGELLFIFSGYSFSDQHINEIIFNCLRQNNRLTALVFFFQDAEVENLHKLTSSYMNLIVFGPTKAIVNGNLGEWQYSADDLKPNEKSETYWNSETNKFKLSDFNELVNFLVSNSGKREAIENITK*	mmseqs_cdd	nonviral_gene	C2	13788	12867	26655	GCA_001747495.1|MKGI01000060.1@region_12868_26655@tool_cenote_CDS_0005	persistent	indirect	.	.	.	GCA_000508285.1_03187
GCA_001747495.1|MKGI01000060.1@region_12868_26655@tool_cenote	cenote	CDS	17343	17855	GCA_001747495.1	MKGI01000060.1	GCA_001747495.1|MKGI01000060.1	GCA_001747495.1_MKGI01000060.1	GCA_001747495.1|MKGI01000060.1	GCA_001747495_1_2	GCA_001747495_1_2@C2	4477	4989	GCA_001747495_1_2_15	GCA_001747495_1_2_15	-	40597	.	.	hypothetical protein	MNSIVREFEKYIITEKSDFISNHNIALTLNEYYDIKIKIEREKFELFKEKKVFLNNEINRLQNLLSDDIEIQNLINERKYKLYELENQNKYLKYKYGSENELMNDEVFSDDFSNEYLFESNDEEYDFTDENHEHKLNYSSREWDNYTDDNPWLGVFGPGDEAETAYWNCD*	.	hypothetical_protein	C2	13788	12867	26655	GCA_001747495.1|MKGI01000060.1@region_12868_26655@tool_cenote_CDS_0006	infer_flexible	indirect	.	.	.	no_good_uniDB_hits
GCA_001747495.1|MKGI01000060.1@region_12868_26655@tool_cenote	cenote	CDS	17862	17981	GCA_001747495.1	MKGI01000060.1	GCA_001747495.1|MKGI01000060.1	GCA_001747495.1_MKGI01000060.1	GCA_001747495.1|MKGI01000060.1	GCA_001747495_1_2	GCA_001747495_1_2@C2	4996	5115	GCA_001747495_1_2_16	GCA_001747495_1_2_16	-	40597	.	PF04760.15	Translation initiation factor IF-2, N-terminal region	MSAKRIIQIAKDLKISPESILDFLIKENYTGLTLYSSIN*	hhsuite_tools	hypothetical_protein	C2	13788	12867	26655	GCA_001747495.1|MKGI01000060.1@region_12868_26655@tool_cenote_CDS_0007	infer_flexible	indirect	.	.	.	no_good_uniDB_hits
GCA_001747495.1|MKGI01000060.1@region_12868_26655@tool_cenote	cenote	CDS	18218	20032	GCA_001747495.1	MKGI01000060.1	GCA_001747495.1|MKGI01000060.1	GCA_001747495.1_MKGI01000060.1	GCA_001747495.1|MKGI01000060.1	GCA_001747495_1_2	GCA_001747495_1_2@C2	5352	7166	GCA_001747495_1_2_17	GCA_001747495_1_2_17	-	40597	.	5FIB_B	Sphingomyelin phosphodiesterase (E.C.3.1.4.12)	MNDIIIHISDLHISDQSRTFGYANSDTYLTCNPSTQNLSFINQFLDKIKAYTCRNKYLVITGDITNIAEQIEFEEGERIISHILTELEIDSDRLLLIPGDHDAHRDSIKEELRKDNATDSLEFLNKIKFKNFNNFYKKFKKIDFEFDKIIFDTITIGNIVLLALNSNYKVNQNGGHGYIPIDILEEELKEIKKTFPYEELILCFHHNLEGEHEDSHFGQWEKENKKDLIALFERFNIKCILNGNEHTHNSKNLANREGIIISDSGVFSSKNSIDASFKIYEIIDSNNCLSLLNNIYVLHKVNGNTESNFGNWIKINSEEIKGLEKNSFEFRKLENLISVNPIDQLPENDEIETTVSNLVYQKSTALVKYENKDIQNKLYNIIKEKKLFHQGHFHWSETSRAHNWIDTAKLLENKEDLYFIKNSIIDVLEKMNLVKNTDLIIGLGYEGNIISSKTSIKYSIPYTYLPYSYRWEDHNDFENKLNFDNSKGKYRQVLLITDVVNDGRTIRKLVGKETREKKFFERVEKIIVVSLFYTGHKDVNINILNFDNLEEKDKIGDEIVNNIEFYTIKQLRIEKCPYGDDYKEKCFIMYDNLHCVHKFYSEKL*	hhsuite_tools	hypothetical_protein	C2	13788	12867	26655	GCA_001747495.1|MKGI01000060.1@region_12868_26655@tool_cenote_CDS_0008	infer_flexible	indirect	.	.	.	no_good_uniDB_hits
GCA_001747495.1|MKGI01000060.1@region_12868_26655@tool_cenote	cenote	CDS	20025	21122	GCA_001747495.1	MKGI01000060.1	GCA_001747495.1|MKGI01000060.1	GCA_001747495.1_MKGI01000060.1	GCA_001747495.1|MKGI01000060.1	GCA_001747495_1_2	GCA_001747495_1_2@C2	7159	8256	GCA_001747495_1_2_18	GCA_001747495_1_2_18	-	40597	.	.	hypothetical protein	MIISKLNAENFIYYNLHSEEVITSNFIEENNNGIFCDRLQSITIERVIDDIEKSGKVQLNIAFDLKHIEGEQPNINRYFTQLKKEGFKIALLNITEELIVKFGFDSMNNSNNVRTDILFFDKGTLKPRKKTGFKKFYLFEDSSINFFEDGFKIDGLFEKEFIKELKPYIEKHGEPHTSSYVYLDSYINIKKFISEQKALCIYSIYKLSLKILKEWRENGPIPFYGEGNLQEYNPPILVCQSLNSSYITSILSNLLKLDILILDKIGPINRIYNSLNKNIIENRNYIVVSDLVCLGTEVKIVKNIIEFLGGKYLGNVSLIKTETLKKKDINRRDATIAIFSIDRDNNEELGYYISTNLKSKKEDNE*	.	hypothetical_protein	C2	13788	12867	26655	GCA_001747495.1|MKGI01000060.1@region_12868_26655@tool_cenote_CDS_0009	infer_flexible	indirect	.	.	.	no_good_uniDB_hits
GCA_001747495.1|MKGI01000060.1@region_12868_26655@tool_cenote	cenote	CDS	21129	22322	GCA_001747495.1	MKGI01000060.1	GCA_001747495.1|MKGI01000060.1	GCA_001747495.1_MKGI01000060.1	GCA_001747495.1|MKGI01000060.1	GCA_001747495_1_2	GCA_001747495_1_2@C2	8263	9456	GCA_001747495_1_2_19	GCA_001747495_1_2_19	-	40597	.	.	hypothetical protein	MIPILDDGVNFTPLVFYTEFLPKLAEFYRGNKTDEIKFLLFQKGDTDIFNSTYRIDPISTPLLLSIIEQLSKFHKKPLELYLNNNHATIKVLEFLYLEGFFRIAKENDILIYNSNYLGAFLGNEIRKEHIIRAYRKKDFPNIDFKQSNEILLRDKVNSIVSYNVQTHFHDLLYDNENTVKNHNEYINILSELITNGVIHSQSTTYAMMFVDKYQTKFSISDNGIGFKNSLSKKQNFPFYYEKNELENSIKLELNSTLNKYFVENLIEIFEILYFSSLKERKGLFDLMLNVVLKSNGYFRLHTNNCQIIISNRIFKYITSLNELRDKILEIHNLYELGKLTKSEYEKTILNSKSILTEHFVKVIKAIVKYYSEETKFSSIRFYNVKFKGVHIEVEIPN*	.	hypothetical_protein	C2	13788	12867	26655	GCA_001747495.1|MKGI01000060.1@region_12868_26655@tool_cenote_CDS_0010	infer_flexible	indirect	.	.	.	no_good_uniDB_hits
GCA_001747495.1|MKGI01000060.1@region_12868_26655@tool_cenote	cenote	CDS	22583	24223	GCA_001747495.1	MKGI01000060.1	GCA_001747495.1|MKGI01000060.1	GCA_001747495.1_MKGI01000060.1	GCA_001747495.1|MKGI01000060.1	GCA_001747495_1_2	GCA_001747495_1_2@C2	9717	11357	GCA_001747495_1_2_20	GCA_001747495_1_2_20	-	40597	.	cd09170	Catalytic domain of EDTA-resistant nuclease Nuc from Salmonella typhimurium and similar proteins. Catalytic domain of an EDTA-resistant nuclease Nuc from Salmonella typhimurium and similar proteins. Nuc is an endonuclease cleaving both single- and double-stranded DNA. It is the smallest known member of the phospholipase D (PLD, EC 3.1.4.4) superfamily that includes a diverse group of proteins with various catalytic functions. Most members of this superfamily have two copies of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue) in a single polypeptide chain and both are required for catalytic activity. However, Nuc only has one copy of the HKD motif per subunit but form a functionally active homodimer (it is most likely also active in solution as a multimeric protein), which has a single active site at the dimer interface containing the HKD motifs from both subunits. Due to the lack of a distinct domain for DNA binding, Nuc cuts DNA non-specifically. It utilizes a two-step mechanism to cleave phosphodiester bonds: Upon substrate binding, the bond is first attacked by a histidine residue from one HKD motif to form a covalent phosphohistidine intermediate, which is then hydrolyzed by water with the aid of a second histidine residue from the other HKD motif in the opposite subunit.	MNKTFTNLFFATALFSVSTYAQTIQESDYTLHYKDNKIEVTFNKDVSLKAFDGKTQTQKRIAQATNQNTFVLDSLNPAQVIKLEYTFNDDTSRTAKANYIVAKSASSGVMNVYFNHTVNNTLAQYQNAVNLADQLDNKLIDYINACQSTLDIAIYNSYSPDSSTGIAGAINSAYARGVKVRVIYDGSTSSVMIPLLNPAIPKLPSPTTSDYGIMHNKFVIFDADSSDPNTPWVWTGSTNWTAVQIDGPDKNNAIAIQDQALAQAYKIEFEEMWGSNSLTPNTTLSKFGPYKTDNTPHNFVIGGKVVNAYFSPSDGVTAKIVNVINSANTDIEIADMLITRDDIRDALINKYNSGLSTINAVFDSQNPTGNDFAALQTAIGTTKVVKYSGAGILHHKFMLVDNYNAGSDPQVLTGSHNWSTSAETRNDENTLIIHDKIVTDQYFQAFAYLYNFAGGVLNATEFAQQNHQLIAYPNPTADIAYIKSDSRTANQSGSYTVFNVAGNKVVEKHFTQLKDAPIDLTAYPKGLYFINLKIGDKTYQTKLLKK*	mmseqs_cdd	nonviral_gene	C2	13788	12867	26655	GCA_001747495.1|MKGI01000060.1@region_12868_26655@tool_cenote_CDS_0011	infer_flexible	indirect	.	.	.	no_good_uniDB_hits
GCA_001747495.1|MKGI01000060.1@region_12868_26655@tool_cenote	cenote	CDS	24281	24523	GCA_001747495.1	MKGI01000060.1	GCA_001747495.1|MKGI01000060.1	GCA_001747495.1_MKGI01000060.1	GCA_001747495.1|MKGI01000060.1	GCA_001747495_1_2	GCA_001747495_1_2@C2	11415	11657	GCA_001747495_1_2_21	GCA_001747495_1_2_21	+	40597	.	1YS6_B	Transcriptional regulatory protein prrA	MVIFTLKNENMVELTSTEKKIIALLKKGQQQAEIAEYFRNNERFNINSQSAVEKVIMGLKKKFGVKTIFQLGVAICKVEN*	hhsuite_tools	hypothetical_protein	C2	13788	12867	26655	GCA_001747495.1|MKGI01000060.1@region_12868_26655@tool_cenote_CDS_0012	infer_flexible	indirect	.	.	.	no_good_uniDB_hits
GCA_001747495.1|MKGI01000060.1@region_12868_26655@tool_cenote	cenote	CDS	24770	25015	GCA_001747495.1	MKGI01000060.1	GCA_001747495.1|MKGI01000060.1	GCA_001747495.1_MKGI01000060.1	GCA_001747495.1|MKGI01000060.1	GCA_001747495_1_2	GCA_001747495_1_2@C2	11904	12149	GCA_001747495_1_2_22	GCA_001747495_1_2_22	+	40597	.	.	hypothetical protein	MVISFCHPVMGGFFMPPPAPPKGGEKIEKKSLNSIENIFAVVLGDRKLTKSAFFLVKEKRGNYKFNFSNQTYNNHLEVLFH*	.	hypothetical_protein	C2	13788	12867	26655	GCA_001747495.1|MKGI01000060.1@region_12868_26655@tool_cenote_CDS_0013	infer_flexible	indirect	.	.	.	no_good_uniDB_hits
GCA_001747495.1|MKGI01000060.1@region_12868_26655@tool_cenote	cenote	CDS	24963	26654	GCA_001747495.1	MKGI01000060.1	GCA_001747495.1|MKGI01000060.1	GCA_001747495.1_MKGI01000060.1	GCA_001747495.1|MKGI01000060.1	GCA_001747495_1_2	GCA_001747495_1_2@C2	12097	13788	GCA_001747495_1_2_23	GCA_001747495_1_2_23	-	40597	.	.	hypothetical protein	MKDIENKINELQDLVSQYDTESFAGSLAFFIKKNIDPAADIGINRFGSKLKDFLYLISLNAFSDKKGKEKFEFPFDGLHLIADKLDEIKKNIYPQDLNNYTKESVIHEMAVRNHFDNGVLSYVEQDLEKLRRVFSPFDEKITSDFGFDIDFLIEACKEIELISLIRGKQTMEFMFTKEFADFNDRIQGGKMSVSASYDLMPKKIQDALDSFNYKTYAYLIFSASDLYHRLDAEKVDKLLKLVSIVPVSDNSIRYYTAESIFEKTPFLKLSNGNYLSLYGKQLPIAIYKILYTHLFNDNNTNVKLRKHREKTLENKVSDMFKSFFASKHSNFFENYYVIDNYEQDFLIIYKGNAIIIEVKASKLREPFRDVDKAIDRLKSDFENSIQYGFDQCKRVEDFFYSDEVFHLKNYRKKVLQAINPSEINNVFSIVVTLERFGCIQTDLGLLLEKEDDIDYPWSVYIDDLEVFLKTLQLKSKNHINNFFDFLDCRRQMHDRMYSIDELDVCACYLQNPSNFKKLAEAEDIHLTFSPYEQGDFDKLYWLGKLKFNEKALPDDYYKFGLKN*	.	hypothetical_protein	C2	13788	12867	26655	GCA_001747495.1|MKGI01000060.1@region_12868_26655@tool_cenote_CDS_0014	cloud	indirect	.	.	.	GCA_003258335.1_02290