core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_001836225.1|KV827781.1@region_507907_519851@tool_cenote	cenote	CDS	507906	508499	GCA_001836225.1	KV827781.1	GCA_001836225.1|KV827781.1	GCA_001836225.1_KV827781.1	GCA_001836225.1|KV827781.1	GCA_001836225_1_9	GCA_001836225_1_9@C35	1	594	GCA_001836225_1_9_439	GCA_001836225_1_9_439	-	1158838	.	.	hypothetical protein	MKLEERNAVDDLVQILMQTSSHSFKFHGVVAMQLFLNDEFKLPSKVDICVERKKLIEIIKVIPKDFSIKYYGKGHSPHQTERPSLSEVAHVEILKDNNIVLNIFVYDVVNDEWIFRLDSSIRLPKNNIYFHSLNWNVDYIKPEIVLMYDLMDNQEYHQFSNYKAVIDALSYYQFYILKLVVGEKRIEEAVINNRKTS*	.	hypothetical_protein	C35	11945	507906	519851	GCA_001836225.1|KV827781.1@region_507907_519851@tool_cenote_CDS_0001	persistent	direct	high	593	0.998	GCA_001836225.1_01464
GCA_001836225.1|KV827781.1@region_507907_519851@tool_cenote	cenote	CDS	508835	509707	GCA_001836225.1	KV827781.1	GCA_001836225.1|KV827781.1	GCA_001836225.1_KV827781.1	GCA_001836225.1|KV827781.1	GCA_001836225_1_9	GCA_001836225_1_9@C35	930	1802	GCA_001836225_1_9_440	GCA_001836225_1_9_440	+	1158838	.	.	hypothetical protein	MSVTVILSVIIIILVIALFLNQRYMKDRVETEEYARNQLIAKNSILSEENLSLKNQMLSSNNDVGHHAFKNAKRELQKILDRFIEQSRLKSYTIIPTSNLAIKHPLFEYARSFDFIIITEVGLINVDVKNWNQKTFYHFDVPDKHAEEGSNQYNTDKVVGHYISSRYHSQFNTTRSGVYTFTEILQDNRVIYEFYDHDPYQQAANNAKALKDQIEKDYQFKIQSIGVIYFSDGSVNIIEGSDESDKYVDTVSTRSSLEKVIDEAVQLSKHPLNDNQIEEISNSFKQHMNN*	.	hypothetical_protein	C35	11945	507906	519851	GCA_001836225.1|KV827781.1@region_507907_519851@tool_cenote_CDS_0002	persistent	direct	high	872	0.999	GCA_001836225.1_01465
GCA_001836225.1|KV827781.1@region_507907_519851@tool_cenote	cenote	CDS	509799	510335	GCA_001836225.1	KV827781.1	GCA_001836225.1|KV827781.1	GCA_001836225.1_KV827781.1	GCA_001836225.1|KV827781.1	GCA_001836225_1_9	GCA_001836225_1_9@C35	1894	2430	GCA_001836225_1_9_441	GCA_001836225_1_9_441	-	1158838	.	PDB:1RKN_A	Thermonuclease	MKSKKSLSLIVLALIAIIVIMFQLINHSGPFSKIGTNQQNQSTDLKGKDKVYVERVVDGDTFVANKDGKEIKVRMIGMDTPETVKPNTPVQPYGKEASNYTKKALTHQNVYLEYDKEKNDRYGRTLAYVWISDKRMFNEELVEKGLAREKYYSPNGKYRDVLIKAQNKAKQNKVNLWS*	common_virus_hmm	common_virus	C35	11945	507906	519851	GCA_001836225.1|KV827781.1@region_507907_519851@tool_cenote_CDS_0003	persistent	direct	high	536	0.998	GCA_001836225.1_01466
GCA_001836225.1|KV827781.1@region_507907_519851@tool_cenote	cenote	CDS	510500	510688	GCA_001836225.1	KV827781.1	GCA_001836225.1|KV827781.1	GCA_001836225.1_KV827781.1	GCA_001836225.1|KV827781.1	GCA_001836225_1_9	GCA_001836225_1_9@C35	2595	2783	GCA_001836225_1_9_442	GCA_001836225_1_9_442	+	1158838	.	.	hypothetical protein	MDSSNESKISLIAIIVAIIVGVILQIVFKLPIIVSVVVAILLGILVGFIVYLIQSTLNKRKK*	.	hypothetical_protein	C35	11945	507906	519851	GCA_001836225.1|KV827781.1@region_507907_519851@tool_cenote_CDS_0004	persistent	direct	high	188	0.995	GCA_001836225.1_01467
GCA_001836225.1|KV827781.1@region_507907_519851@tool_cenote	cenote	CDS	510888	511067	GCA_001836225.1	KV827781.1	GCA_001836225.1|KV827781.1	GCA_001836225.1_KV827781.1	GCA_001836225.1|KV827781.1	GCA_001836225_1_9	GCA_001836225_1_9@C35	2983	3162	GCA_001836225_1_9_443	GCA_001836225_1_9_443	+	1158838	.	PF17412.2	Family of unknown function	MEILDCMIDTNSAIYTVKTTGGNVFHHTLSTDTPTKKVIEILTLLSDHIDKSNQTKLKI*	hhsuite_tools	hypothetical_protein	C35	11945	507906	519851	GCA_001836225.1|KV827781.1@region_507907_519851@tool_cenote_CDS_0005	persistent	direct	high	179	0.994	GCA_001836225.1_01468
GCA_001836225.1|KV827781.1@region_507907_519851@tool_cenote	cenote	CDS	511099	511701	GCA_001836225.1	KV827781.1	GCA_001836225.1|KV827781.1	GCA_001836225.1_KV827781.1	GCA_001836225.1|KV827781.1	GCA_001836225_1_9	GCA_001836225_1_9@C35	3194	3796	GCA_001836225_1_9_444	GCA_001836225_1_9_444	-	1158838	.	cd19930	phosphoacceptor receiver (REC) domain of DesR and similar proteins. This group is composed of Bacillus subtilis DesR, Streptococcus pneumoniae response regulator spr1814, and similar proteins, all containing an N-terminal REC domain and a C-terminal LuxR family helix-turn-helix (HTH) DNA-binding output domain. DesR is a response regulator that, together with its cognate sensor kinase DesK, comprises a two-component regulatory system that controls membrane fluidity. Phosphorylation of the REC domain of DesR is allosterically coupled to two distinct exposed surfaces of the protein, controlling noncanonical dimerization/tetramerization, cooperative activation, and DesK binding. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	MISLIIAEDQLMLRKAMVQLIELHEEMKILNDVENGKEALQFIENEEPDVAILDIEIPGMTGLEILAQIRAKGLNTKVIIVTTFKRPGYFEKAVANGVDAYVLKERSVEDLVRTIYNVMNGEKEYSTSLMTSLFKESNPLTHKEQVVLREIGNGLSSKEIAEKLYLSDGTVRNYTSTIIDKLYSDNRFDAWKKATAKGWI*	mmseqs_cdd	nonviral_gene	C35	11945	507906	519851	GCA_001836225.1|KV827781.1@region_507907_519851@tool_cenote_CDS_0006	persistent	direct	high	602	0.998	GCA_001836225.1_01469
GCA_001836225.1|KV827781.1@region_507907_519851@tool_cenote	cenote	CDS	511698	512768	GCA_001836225.1	KV827781.1	GCA_001836225.1|KV827781.1	GCA_001836225.1_KV827781.1	GCA_001836225.1|KV827781.1	GCA_001836225_1_9	GCA_001836225_1_9@C35	3793	4863	GCA_001836225_1_9_445	GCA_001836225_1_9_445	-	1158838	.	COG4585	Signal transduction histidine kinase  [Signal transduction mechanisms]. 	MGEISSLVYLIFPIFGLFDSERVSNKLIYIIALSIFTISYLMLVLLHTKLNKNHLYILLLIHYVCIMYFVYAYEPLLSMFFFYSAFALPFIFDVGLKSKEFISYIITMIICVLFIYIMHHDQVYMMIIYYVVILMIMFGNFQVRKERKVRKELEEKNRYINVLIAEQERNRIGQDLHDTLGHVFASLTLKSELAAKLIDTDKESAKKEMMAINQLSRETLNKVRSIVDDLKVQSFEEEVSSVETILRDANLKFIFKNKGAAKSLNPAKQTILSMILKEAINNVIKHAHATEVIGQLVEEHQQIKLIVQDNGVGIKDKEACHLRSIKERAEYLNGKVAVKSENGTTVVVTIPRGELM*	mmseqs_cdd	nonviral_gene	C35	11945	507906	519851	GCA_001836225.1|KV827781.1@region_507907_519851@tool_cenote_CDS_0007	persistent	direct	high	1070	0.999	GCA_001836225.1_01470
GCA_001836225.1|KV827781.1@region_507907_519851@tool_cenote	cenote	CDS	512799	513530	GCA_001836225.1	KV827781.1	GCA_001836225.1|KV827781.1	GCA_001836225.1_KV827781.1	GCA_001836225.1|KV827781.1	GCA_001836225_1_9	GCA_001836225_1_9@C35	4894	5625	GCA_001836225_1_9_446	GCA_001836225_1_9_446	-	1158838	.	COG0842	ABC-type multidrug transport system, permease component [Defense mechanisms]. 	MLDTFLKTEIKIMFRKKLYLFMSIFLPVAFYLLFTSLLDLPEEAKKPFYKEYMYSMTVFSLMNFCMMSFPLDMIEERNNGWYKHLMSTPLKPVHYYLAKVLKTMCQFLVAIIIIFMVAHFYKNVNMDFTNWILSSVVLWIGASLFLTFGLVIAQFNDIQKASSVANLLNIAMAIVGGLWFPVNTFPNWLQVISKKMPTYHLKQIALDLGKDKGINFTSFGFLILYSIIFLSIALLINKKKDVS*	mmseqs_cdd	nonviral_gene	C35	11945	507906	519851	GCA_001836225.1|KV827781.1@region_507907_519851@tool_cenote_CDS_0008	persistent	direct	high	731	0.999	GCA_001836225.1_01471
GCA_001836225.1|KV827781.1@region_507907_519851@tool_cenote	cenote	CDS	513524	514408	GCA_001836225.1	KV827781.1	GCA_001836225.1|KV827781.1	GCA_001836225.1_KV827781.1	GCA_001836225.1|KV827781.1	GCA_001836225_1_9	GCA_001836225_1_9@C35	5619	6503	GCA_001836225_1_9_447	GCA_001836225_1_9_447	-	1158838	.	COG1131	ABC-type multidrug transport system, ATPase component [Defense mechanisms]. 	MVIKLENLSKSFNNNKVLNDICLELKDNTCTALIGKNGAGKTTLIDILIGNIQGDEGHIVDESKMIDTNHMGVLYQKTNFPKFFKVKELFHLHQSFYKNPITLSQFINITQFNDKQMNQMASQLSGGQKRILDFALTLVGQPEFLILDEPTSGMDIETREHFWSIIEKLKQAHVTILYTSHYIEEVERMADQVVLLDQGQIQLDDSPEHIKNTQNNSIIVLPVIDDGLLSDLKNEFNIKKLKNHYEIKTNQVEPVIQKLIEYKFDLNKIEIHKMSLLEIMFSGIENQKGVMTEC*	mmseqs_cdd	nonviral_gene	C35	11945	507906	519851	GCA_001836225.1|KV827781.1@region_507907_519851@tool_cenote_CDS_0009	persistent	direct	high	884	0.999	GCA_001836225.1_01472
GCA_001836225.1|KV827781.1@region_507907_519851@tool_cenote	cenote	CDS	514584	516056	GCA_001836225.1	KV827781.1	GCA_001836225.1|KV827781.1	GCA_001836225.1_KV827781.1	GCA_001836225.1|KV827781.1	GCA_001836225_1_9	GCA_001836225_1_9@C35	6679	8151	GCA_001836225_1_9_448	GCA_001836225_1_9_448	-	1158838	.	PDB:2ZE9_A	Phospholipase-D	MDFGYLGTILTIILILGFIINLVLAFVIIFLEKDRRSASSTWAWLFVLFILPIIGFILYLFLGRTVSKKKMEKNNGKELDAFQDLVKAQADSFEKLNFESTNDQVEKHHDLIRMLLMKQDAFLTENNKIDLFTDGHKLYDKVIEDIYNAKDYIHLEYYTFELDGLGKKIIDALETKLKEGLEVKLLYDDVGSKKVNMAKFKQFKSLGGEVEAFFASKFPLVNFRMNNRNHRKIIIIDGQIGYIGGFNIGDDYLGLGKLGYWRDTHLRVQGDSVDALQLRFILDWNSQAHRPQFEYDQKYFPKKTGDKGDKALQIASSGPAFDLHQIEYGYTKMIMSARKSIYLQSPYFIPDQSYINALKMAANSGVEVNLMIPCKPDHPFVYWATFSNAADLLDSGVNVYTYQNGFIHSKILMIDDEVSSIGSANMDFRSFELNFEINAFVYDKEIAQQLRQAFEEDIKKSKLLTKEKYDQRPLSIKFKEDLAKLVSPIL*	common_virus_hmm	common_virus	C35	11945	507906	519851	GCA_001836225.1|KV827781.1@region_507907_519851@tool_cenote_CDS_0010	persistent	direct	high	1472	0.999	GCA_001836225.1_01473
GCA_001836225.1|KV827781.1@region_507907_519851@tool_cenote	cenote	CDS	516117	516323	GCA_001836225.1	KV827781.1	GCA_001836225.1|KV827781.1	GCA_001836225.1_KV827781.1	GCA_001836225.1|KV827781.1	GCA_001836225_1_9	GCA_001836225_1_9@C35	8212	8418	GCA_001836225_1_9_449	GCA_001836225_1_9_449	-	1158838	.	PF10957.8	Sporulation protein Cse60	MNLMQQIKFKTFTEDSLERLEKSVNEFLRSDDGSSYKLLNISIKQVEERKFPNIEEDYNAVLTLVTQE*	hhsuite_tools	hypothetical_protein	C35	11945	507906	519851	GCA_001836225.1|KV827781.1@region_507907_519851@tool_cenote_CDS_0011	persistent	direct	high	206	0.995	GCA_001836225.1_01474
GCA_001836225.1|KV827781.1@region_507907_519851@tool_cenote	cenote	CDS	516636	517661	GCA_001836225.1	KV827781.1	GCA_001836225.1|KV827781.1	GCA_001836225.1_KV827781.1	GCA_001836225.1|KV827781.1	GCA_001836225_1_9	GCA_001836225_1_9@C35	8731	9756	GCA_001836225_1_9_450	GCA_001836225_1_9_450	+	1158838	.	COG2008	Threonine aldolase [Amino acid transport and metabolism]. 	MISFENDYLEGAHEQVLKRLVETNRIQAAGYGFDDFSAQAADKIRETIQCPDATIRFLVGGTQTNQVVINSMLKSYEGVISANTGHVAVHEGGAIEFSGHKVLAIPSSEGKISAEGVEAYLDTFYSDFKREHMVFPGMVYISHPTEYGTLYTKDELKSLAKVCKKHEIPLFMDGARLGYGLMSENTDVTIKDVANYCDIFYIGGTKIGALCGEAIVFTKNNEPKNFTTIIKHHGALLAKGRLTGIQFLELFTDDLYFKISKHAIDMAKKVKKGFLDKGYQLYFDSPTNQQFFVISNDKIKELEQKVKFAIWEKYDDNHRVVRFATSWATTEENVEELLKLI*	mmseqs_cdd	nonviral_gene	C35	11945	507906	519851	GCA_001836225.1|KV827781.1@region_507907_519851@tool_cenote_CDS_0012	persistent	direct	high	1025	0.999	GCA_001836225.1_01475
GCA_001836225.1|KV827781.1@region_507907_519851@tool_cenote	cenote	CDS	517780	517914	GCA_001836225.1	KV827781.1	GCA_001836225.1|KV827781.1	GCA_001836225.1_KV827781.1	GCA_001836225.1|KV827781.1	GCA_001836225_1_9	GCA_001836225_1_9@C35	9875	10009	GCA_001836225_1_9_451	GCA_001836225_1_9_451	-	1158838	.	.	hypothetical protein	MTAIDNVIVKVTSAFISVIDYIYLLKIDIEIENKHNKKDFVEFL*	.	hypothetical_protein	C35	11945	507906	519851	GCA_001836225.1|KV827781.1@region_507907_519851@tool_cenote_CDS_0013	cloud	direct	high	134	0.993	GCA_001836225.1_01476
GCA_001836225.1|KV827781.1@region_507907_519851@tool_cenote	cenote	CDS	517911	518288	GCA_001836225.1	KV827781.1	GCA_001836225.1|KV827781.1	GCA_001836225.1_KV827781.1	GCA_001836225.1|KV827781.1	GCA_001836225_1_9	GCA_001836225_1_9@C35	10006	10383	GCA_001836225_1_9_452	GCA_001836225_1_9_452	-	1158838	.	PDB:6B0X_d	capsid-scaffolding-protein	MENNQSNITEETKNNTNLENNDEQAQQNEKTFSQEEVSQMIKDRLARERRKSEERMKDAIQEAEKLAKMIKDQKNQYELEKLLKENEELKAEKALSQMKNETRSMLNEFGVQNFDDQIVNVLVKA*	hallmark_hmm	common_virus	C35	11945	507906	519851	GCA_001836225.1|KV827781.1@region_507907_519851@tool_cenote_CDS_0014	persistent	direct	high	377	0.997	GCA_001836225.1_01477
GCA_001836225.1|KV827781.1@region_507907_519851@tool_cenote	cenote	CDS	518448	518558	GCA_001836225.1	KV827781.1	GCA_001836225.1|KV827781.1	GCA_001836225.1_KV827781.1	GCA_001836225.1|KV827781.1	GCA_001836225_1_9	GCA_001836225_1_9@C35	10543	10653	GCA_001836225_1_9_453	GCA_001836225_1_9_453	-	1158838	.	.	hypothetical protein	MYTYQLDGSCSINEMITDLKENAKKESGETRTKPSN*	.	hypothetical_protein	C35	11945	507906	519851	GCA_001836225.1|KV827781.1@region_507907_519851@tool_cenote_CDS_0015	cloud	direct	high	110	0.991	GCA_001836225.1_01478
GCA_001836225.1|KV827781.1@region_507907_519851@tool_cenote	cenote	CDS	518564	519850	GCA_001836225.1	KV827781.1	GCA_001836225.1|KV827781.1	GCA_001836225.1_KV827781.1	GCA_001836225.1|KV827781.1	GCA_001836225_1_9	GCA_001836225_1_9@C35	10659	11945	GCA_001836225_1_9_454	GCA_001836225_1_9_454	-	1158838	.	PFAM:PF06152.10	minor-capsid-protein	MKRKDFSDEANNALKLYNLSMKVSREKLLKQQLDLIVKDSTLDIQDEIKNNLVDAVDREVKRQAHILGEHVKIDDTEVKAVVNSNFKGVNWSTRLWQDMAVVQKEVEKTTSNVLLRGRHPNEYVSEFKKQTNSTTYNASRLLVTESARVQAESQKLTYLKDLGEDGEYKYVAKIDKKTSKICHSLNGKVFKVKDTIPGINAPPMHPWYRSTTVPHVGNWRDKFFTERKGKYQVEQKQGNNELKQAKVLGKKIIITDQAIDKVRYIDIPTHTKEENKFIQEQHKALLKDAKENNDSNEVAYLLKDGKVIKVYGNQDSVSFEPGSMANNLLFNSKENSIIMLHNHPGQSNFSLNDLGLYIRLNSLKTITIVTNKGQVKYITKTNKYVSSDAIDLLAKHFYNKDERLIKEKEIEKYLKDLHRINMIKYIVR*	hallmark_hmm	common_virus	C35	11945	507906	519851	GCA_001836225.1|KV827781.1@region_507907_519851@tool_cenote_CDS_0016	cloud	direct	high	1286	0.999	GCA_001836225.1_01479