core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_001837635.1|KV833376.1@region_105063_124732@tool_cenote	cenote	CDS	105062	106297	GCA_001837635.1	KV833376.1	GCA_001837635.1|KV833376.1	GCA_001837635.1_KV833376.1	GCA_001837635.1|KV833376.1	GCA_001837635_1_20	GCA_001837635_1_20@C5	1	1236	GCA_001837635_1_20_87	GCA_001837635_1_20_87	+	310033	.	cd17486	AmpG and similar transporters of the Major Facilitator Superfamily. AmpG acts as an inner membrane permease in the beta-lactamase induction system and in peptidoglycan recycling. It transports meuropeptide from the periplasm into the cytosol in gram-negative bacteria, which is essential for the induction of the ampC encoding beta-lactamase. The AmpG family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	MSDNQTSPNSRDWLLLIGGSTYKFTLTGFYLVALVAILKNHGYSLNQLSWIHLISGIEAAKVLFAALMERRPAGWFGRFRGWLLAATLGLSAVFGLMACTDITQNFALLLTCCVLLSAMSAVYGCAMLGLSCIVLPHRERGFGGVIQTMAARGGKMIGGALVLWLYQEYGQTAAAGFMLAFSLLMLLQLLYYREPESPTAQGSWTALAARLVSFWRQPETGWRWLVFLFAVAAPYAFMAATFVPKLADLGFTPKQTGGILAVGIPVACLIVTPLSGWFSRNYPRRKLVFLLYALQLPLLASMTAIDALARVHPWLPPAQIIALSLSYTLLLPVILALVMDKSDRATAALDSSLQFSVVLLGSYAAGFAALRLAKAIGYTDAYWVAVCLAVLVGLLLYLNRNLFNHSERDSQ*	mmseqs_cdd	nonviral_gene	C5	19670	105062	124732	GCA_001837635.1|KV833376.1@region_105063_124732@tool_cenote_CDS_0001	persistent	direct	high	1235	0.999	GCA_001837635.1_01289
GCA_001837635.1|KV833376.1@region_105063_124732@tool_cenote	cenote	CDS	106441	106929	GCA_001837635.1	KV833376.1	GCA_001837635.1|KV833376.1	GCA_001837635.1_KV833376.1	GCA_001837635.1|KV833376.1	GCA_001837635_1_20	GCA_001837635_1_20@C5	1380	1868	GCA_001837635_1_20_88	GCA_001837635_1_20_88	+	310033	.	COG2839	Uncharacterized conserved protein YqgC, DUF456 family [Function unknown]. 	MTAVLIVLGLIAIVVGILGTIYPALPGLGLMFGGAWLLGYAGDYQVFGSGTLTFLAIVAVFGTAMDYVAGALGAKYTGASKTAVWGAFIGGIVGAFFSIPGLLLGPLTGAAIGEFIARKDTWQAGKVGIGTFIGFIIGTVAKIGCALTIAMTILFVWLASLF*	mmseqs_cdd	nonviral_gene	C5	19670	105062	124732	GCA_001837635.1|KV833376.1@region_105063_124732@tool_cenote_CDS_0002	persistent	direct	high	488	0.998	GCA_001837635.1_01290
GCA_001837635.1|KV833376.1@region_105063_124732@tool_cenote	cenote	CDS	107056	107286	GCA_001837635.1	KV833376.1	GCA_001837635.1|KV833376.1	GCA_001837635.1_KV833376.1	GCA_001837635.1|KV833376.1	GCA_001837635_1_20	GCA_001837635_1_20@C5	1995	2225	GCA_001837635_1_20_89	GCA_001837635_1_20_89	+	310033	.	.	hypothetical protein	MLIFYTVNPEPVSFPKSYILKVFKDINDESQCVKTLCFPISYPALKHKAENAANECGRLLVRELMNEEFRRESLGR*	.	hypothetical_protein	C5	19670	105062	124732	GCA_001837635.1|KV833376.1@region_105063_124732@tool_cenote_CDS_0003	cloud	direct	high	230	0.996	GCA_001837635.1_01291
GCA_001837635.1|KV833376.1@region_105063_124732@tool_cenote	cenote	CDS	107252	108610	GCA_001837635.1	KV833376.1	GCA_001837635.1|KV833376.1	GCA_001837635.1_KV833376.1	GCA_001837635.1|KV833376.1	GCA_001837635_1_20	GCA_001837635_1_20@C5	2191	3549	GCA_001837635_1_20_90	GCA_001837635_1_20_90	+	310033	.	PFAM:PF02486.18	Replication-initiation-factor	MRNLDVKAWEDKAVAVGTDMAAAPADGKAATTAEGCPPRLIGGEQNKTPNPKGAEKSENQDFEFEYFSHFVSDGKGKFIEIPLRRGRDDGAFIDQITFTIHEDSLPKVTGKGLVSDTEFVVKYSELLEEILGFGITQKLPFKGKFFYKSCYQLGPDNVEYGKVHYGGQRETMLVELNGTGCQAAIPGWENRLYEFLSKCIRPKITRVDVAHDFFNGEYTPDQALLDHDNGHFDVHNMRPKSECRGTAWRNDDGSGKTFYVGKRGNSKFTRVYEKGKQFGDVNSPWVRFETEFRAGDIEIPLDVLLYPGSYLGGAYPICTAIFKTESKRMDAKTETVNLSFDHKLFHARNQVGKMVNFLRDIGWDDTKIVDELVKGIEGYPKGLQPEQYDCRDQTQKIQYIHEEQKAIDDLNMQTLLDDLLDEKETAFPQDREKQHIKDIELEEKIISNFLNK*	rep_hall_hmm	common_virus	C5	19670	105062	124732	GCA_001837635.1|KV833376.1@region_105063_124732@tool_cenote_CDS_0004	shell	direct	high	1358	0.999	GCA_001837635.1_01292
GCA_001837635.1|KV833376.1@region_105063_124732@tool_cenote	cenote	CDS	108623	108934	GCA_001837635.1	KV833376.1	GCA_001837635.1|KV833376.1	GCA_001837635.1_KV833376.1	GCA_001837635.1|KV833376.1	GCA_001837635_1_20	GCA_001837635_1_20@C5	3562	3873	GCA_001837635_1_20_91	GCA_001837635_1_20_91	+	310033	.	PFAM:PF07459.10	RstB-protein	MFEQSQVTTYSSTLLGAKQFKGEIDGNKIDSCTVLVASPMPSNGNAVGFTAASMKFGDSHNFDKLKNLKFPCAVDVTVAMESTGKGLVPKLLDFQVKGAAPKA*	common_virus_hmm	common_virus	C5	19670	105062	124732	GCA_001837635.1|KV833376.1@region_105063_124732@tool_cenote_CDS_0005	shell	direct	high	311	0.997	GCA_001837635.1_01293
GCA_001837635.1|KV833376.1@region_105063_124732@tool_cenote	cenote	CDS	108948	109151	GCA_001837635.1	KV833376.1	GCA_001837635.1|KV833376.1	GCA_001837635.1_KV833376.1	GCA_001837635.1|KV833376.1	GCA_001837635_1_20	GCA_001837635_1_20@C5	3887	4090	GCA_001837635_1_20_92	GCA_001837635_1_20_92	+	310033	.	.	hypothetical protein	MSKYQQKFIVQELENHEFIYPDPFGDIGFTPNIKSAGQYESYEDAFSSAIEEIGGEFLIFSFYTKED*	.	hypothetical_protein	C5	19670	105062	124732	GCA_001837635.1|KV833376.1@region_105063_124732@tool_cenote_CDS_0006	cloud	direct	high	203	0.995	GCA_001837635.1_01294
GCA_001837635.1|KV833376.1@region_105063_124732@tool_cenote	cenote	CDS	109237	109455	GCA_001837635.1	KV833376.1	GCA_001837635.1|KV833376.1	GCA_001837635.1_KV833376.1	GCA_001837635.1|KV833376.1	GCA_001837635_1_20	GCA_001837635_1_20@C5	4176	4394	GCA_001837635_1_20_93	GCA_001837635_1_20_93	+	310033	.	PFAM:PF10389.8	coat-protein-B	MKLMNTCRKYGAKLAVVAAAPLAFATQALAEVPESVKTDLATAKTDALSVAAIVLGIIASIFAIQLIRRVLR*	hallmark_hmm	common_virus	C5	19670	105062	124732	GCA_001837635.1|KV833376.1@region_105063_124732@tool_cenote_CDS_0007	shell	direct	high	218	0.995	GCA_001837635.1_01295
GCA_001837635.1|KV833376.1@region_105063_124732@tool_cenote	cenote	CDS	109523	109801	GCA_001837635.1	KV833376.1	GCA_001837635.1|KV833376.1	GCA_001837635.1_KV833376.1	GCA_001837635.1|KV833376.1	GCA_001837635_1_20	GCA_001837635_1_20@C5	4462	4740	GCA_001837635_1_20_94	GCA_001837635_1_20_94	+	310033	.	.	hypothetical protein	MGYQVGNNCYATRQDAENVYFSLVPPKIGDDGKLYQLNFTKFGWKYGEQILKAELPECNPIDSMKDGSYIGWSVVAIMAAVWGIRLIWQKLR*	.	hypothetical_protein	C5	19670	105062	124732	GCA_001837635.1|KV833376.1@region_105063_124732@tool_cenote_CDS_0008	cloud	direct	high	278	0.996	GCA_001837635.1_01296
GCA_001837635.1|KV833376.1@region_105063_124732@tool_cenote	cenote	CDS	109893	110129	GCA_001837635.1	KV833376.1	GCA_001837635.1|KV833376.1	GCA_001837635.1_KV833376.1	GCA_001837635.1|KV833376.1	GCA_001837635_1_20	GCA_001837635_1_20@C5	4832	5068	GCA_001837635_1_20_95	GCA_001837635_1_20_95	+	310033	.	.	hypothetical protein	MDDDFEYEQGASYGGADYGFGDFMEPDSDHETHEDYMDRVWSDGYDQHQDYLIFLIDAGLMPEDSTVEDMIASGYGSF*	.	hypothetical_protein	C5	19670	105062	124732	GCA_001837635.1|KV833376.1@region_105063_124732@tool_cenote_CDS_0009	cloud	direct	high	236	0.996	GCA_001837635.1_01297
GCA_001837635.1|KV833376.1@region_105063_124732@tool_cenote	cenote	CDS	110180	110500	GCA_001837635.1	KV833376.1	GCA_001837635.1|KV833376.1	GCA_001837635.1_KV833376.1	GCA_001837635.1|KV833376.1	GCA_001837635_1_20	GCA_001837635_1_20@C5	5119	5439	GCA_001837635_1_20_96	GCA_001837635_1_20_96	+	310033	.	.	hypothetical protein	MFYISEEELRFKKDTNPNYSNEKLCHVFMTELFNLKNLYPFHNFIEIAKNAMQYYLNRSYLDEVIVFFEDCSILKVNFKKDGFEWSEHYDEDITTAFYYGRYTFRV*	.	hypothetical_protein	C5	19670	105062	124732	GCA_001837635.1|KV833376.1@region_105063_124732@tool_cenote_CDS_0010	cloud	direct	high	320	0.997	GCA_001837635.1_01298
GCA_001837635.1|KV833376.1@region_105063_124732@tool_cenote	cenote	CDS	110445	111941	GCA_001837635.1	KV833376.1	GCA_001837635.1|KV833376.1	GCA_001837635.1_KV833376.1	GCA_001837635.1|KV833376.1	GCA_001837635_1_20	GCA_001837635_1_20@C5	5384	6880	GCA_001837635_1_20_97	GCA_001837635_1_20_97	+	310033	.	PFAM:PF05616.12	attachment-protein	MMKILQRLFITVVILLGFNFSFADVDIHVEKNGRMRVPAGGFNQNGIRPWMYLDNNGPKFHHEYVSRFDKSLHVREASTGLRSASTVPVTLEARVSRKAVLSGAFGLVKAGAKLALKAAPYVGAASYAYDAYQAVNPSLESAGYEYNDVSNEYLKVYKDALCTIDKDSCVGVDTSVMRALSKGGVSEKQAQQLLLMQVESEFKKYFDNVIKPNEPDIYFKYCFWLDGVACETSKQSRYGYYFQNRALTKILEEDEFLNIATPSIDSNPTPFVEGTGRPEYKENIKVPAGTVVTIGPVTPENGKPVQITITFGQDSNGNTTANVATTQRPDLTPGGSEAPNKKPDPDPAPNPDGKPDKKPDDKPDPDGNPDKRPDDDPSDKDKDKDKRKEDKKDDKKEESKGLLCNIFPDILACSEKGDVEEQEEPFKIPHTNNDTTFSPDFFLPDNGVCPAPRTATYLGITMEFKYDMICNFAEMIRFLVIGIAAVAAAYIMFSSRKD*	common_virus_hmm	common_virus	C5	19670	105062	124732	GCA_001837635.1|KV833376.1@region_105063_124732@tool_cenote_CDS_0011	cloud	direct	high	1496	0.999	GCA_001837635.1_01299
GCA_001837635.1|KV833376.1@region_105063_124732@tool_cenote	cenote	CDS	111945	112238	GCA_001837635.1	KV833376.1	GCA_001837635.1|KV833376.1	GCA_001837635.1_KV833376.1	GCA_001837635.1|KV833376.1	GCA_001837635_1_20	GCA_001837635_1_20@C5	6884	7177	GCA_001837635_1_20_98	GCA_001837635_1_20_98	+	310033	.	PFAM:PF10734.8	Minor-Head-Virion-Protein	MKAAFFAILQRLLTYIVAKVFIALGISFVTYTGFTVGLGFIKDYVKNQFNSMPSDILQIVMMAGFGHALGLIFGAFAFNVAMQSISKLSFIPGGKAK*	hallmark_hmm	common_virus	C5	19670	105062	124732	GCA_001837635.1|KV833376.1@region_105063_124732@tool_cenote_CDS_0012	cloud	direct	high	293	0.997	GCA_001837635.1_01300
GCA_001837635.1|KV833376.1@region_105063_124732@tool_cenote	cenote	CDS	112235	113395	GCA_001837635.1	KV833376.1	GCA_001837635.1|KV833376.1	GCA_001837635.1_KV833376.1	GCA_001837635.1|KV833376.1	GCA_001837635_1_20	GCA_001837635_1_20@C5	7174	8334	GCA_001837635_1_20_99	GCA_001837635_1_20_99	+	310033	.	PFAM:PF05707.11	Zonular-occludens-toxin-(Zot)	MIILQTGVPGSGKTASVVNMLMTDESYTHFTDKDGVKKKRPLFVNGIPELKVEHEELTDEQIKEKPFQDFLPYGSLVIIDEVQRLMGTRSAASKVPPFIEALALHRHHGLDIVLITQHPTYLDSFVRKLVQRHMHVSIKPVGRKLYEWNECVDQPDSSVNIAKAIERTFVVPKKSFGMYKSAEVHTKPKRRIPKSLIFVVLFIPLLIGFTLYTINNMSKRFSADEQQTTSTIAASDVDGVEPKTSPATADIGQNLKPEDFVPTLVEKPESKPIYNGVRQVKTFEYPVGCVDGGKSGCTCYSSQGTPLKEITKVMCKDYVKNGLPFNPYKDEHQTVQQPQTTPQTAYAPENGQVLTMGGKSPQNLMYDGYVEAGEKTGFQNGAKVGS*	hallmark_hmm	common_virus	C5	19670	105062	124732	GCA_001837635.1|KV833376.1@region_105063_124732@tool_cenote_CDS_0013	cloud	direct	high	1160	0.999	GCA_001837635.1_01301
GCA_001837635.1|KV833376.1@region_105063_124732@tool_cenote	cenote	CDS	113693	114649	GCA_001837635.1	KV833376.1	GCA_001837635.1|KV833376.1	GCA_001837635.1_KV833376.1	GCA_001837635.1|KV833376.1	GCA_001837635_1_20	GCA_001837635_1_20@C5	8632	9588	GCA_001837635_1_20_100	GCA_001837635_1_20_100	+	310033	.	PFAM:PF01548.16	Transposase	MNVIGLDVSKDTIDATLITTKGSKDYIKISNSTEGFENLINWIKTKRIRKIAISMEATGIYYEQAAEYLSALYTIFVINPLKIKEYAKSQFSHTKTDKADSKLIAEFANRHLDKLTPFRPSENPILYKLVNLLQQLKEQQKETLNRLHTAKDIYIKSTHEAIIELLEEKIDQTSKRIEGMIKQKESLNIEYQNLQTIPAIGKETAVILLRHLTDKNFETANKFVAFAGLSPKIEQSGTSVNKKGRLSRYGHRQLKRALFMPALVAYRMGAFPQLVRNLESAKKPKMIIIVALMRKLAKIAFYIHKTKKPFDKARHQTV*	common_virus_hmm	common_virus	C5	19670	105062	124732	GCA_001837635.1|KV833376.1@region_105063_124732@tool_cenote_CDS_0014	cloud	direct	high	956	0.999	GCA_001837635.1_01302
GCA_001837635.1|KV833376.1@region_105063_124732@tool_cenote	cenote	CDS	114805	115464	GCA_001837635.1	KV833376.1	GCA_001837635.1|KV833376.1	GCA_001837635.1_KV833376.1	GCA_001837635.1|KV833376.1	GCA_001837635_1_20	GCA_001837635_1_20@C5	9744	10403	GCA_001837635_1_20_101	GCA_001837635_1_20_101	-	310033	.	TIGR02292	yecA family protein. This family resembles pfam03695 (version pfam03695.3), uncharacterised protein family UPF0149, but is broader in scope and includes additional proteins. It includes E. coli proteins YgfB and YecA. The function of this family of proteins is unknown. The crystal structure is known for the member from Haemophilus influenzae (Ygfb, HI0817). [Unknown function, General]	MQILTFDEAARSRLMELLDAKSEAHNTMRCDEVQGFMMALLSGPDALNPTNWLPEILGEESLFDAKERTEIERLVMAMAADMRMKLNEKTLPDLWFYEDEAGNPDFYTWCNAYLYALDIVPTDWFEAVDQEEFEDLFYPIMALGGIYDDEENGEVISHLNEKELTQLESDLPHVLLDIYWYWQAIINKPQTVRREGEKVGRNDPCPCGSGKKYKACCGK*	mmseqs_cdd	nonviral_gene	C5	19670	105062	124732	GCA_001837635.1|KV833376.1@region_105063_124732@tool_cenote_CDS_0015	persistent	direct	high	659	0.998	GCA_001837635.1_01303
GCA_001837635.1|KV833376.1@region_105063_124732@tool_cenote	cenote	CDS	115499	116290	GCA_001837635.1	KV833376.1	GCA_001837635.1|KV833376.1	GCA_001837635.1_KV833376.1	GCA_001837635.1|KV833376.1	GCA_001837635_1_20	GCA_001837635_1_20@C5	10438	11229	GCA_001837635_1_20_102	GCA_001837635_1_20_102	-	310033	.	COG0566	tRNA G18 (ribose-2'-O)-methylase SpoU [Translation, ribosomal structure and biogenesis]. 	MKLITSAQNEQLKHLFRLLTQAKARRESGETVLEGVHLLQTYLQSGGTPKQVYLPEKKQQHPEIQEITAQLDEGLITWVGNEALSKITSLTDADDVMTWIDIPQRAGLPSDGDCVVLERVQDPGNAGTILRSAAAAGVRQIVCGNDSVDIWSPKVLRAGMGAHFLLSIFSRVELSAWMETYQHQIWATALGGRNIGLYEMDLSQPCAWVFGNEGSGVSETVKEKADACVKIPMLGQTESLNVAMAATVCLFEQMRQRIHAQAV*	mmseqs_cdd	nonviral_gene	C5	19670	105062	124732	GCA_001837635.1|KV833376.1@region_105063_124732@tool_cenote_CDS_0016	persistent	direct	high	791	0.999	GCA_001837635.1_01304
GCA_001837635.1|KV833376.1@region_105063_124732@tool_cenote	cenote	CDS	116409	116951	GCA_001837635.1	KV833376.1	GCA_001837635.1|KV833376.1	GCA_001837635.1_KV833376.1	GCA_001837635.1|KV833376.1	GCA_001837635_1_20	GCA_001837635_1_20@C5	11348	11890	GCA_001837635_1_20_103	GCA_001837635_1_20_103	-	310033	.	COG3073	Negative regulator of sigma E activity [Signal transduction mechanisms]. 	MNDKTNKALEYVSALMDGEALTDEMLDAVLADEEALRAWHEYHIIGDCIRQGAAASVTGETMQSKAFTVPQAEGKQEKYAQREAANSGFFKFFAAAASVCAIAVAVWQFTPQSSRDAMPVAEKSNTQPAQNIIPVSGTPSDKAASEPGETVVPNAAKDGKIENHPTVRTEQKNEQQTVVQ*	mmseqs_cdd	nonviral_gene	C5	19670	105062	124732	GCA_001837635.1|KV833376.1@region_105063_124732@tool_cenote_CDS_0017	persistent	direct	high	542	0.998	GCA_001837635.1_01305
GCA_001837635.1|KV833376.1@region_105063_124732@tool_cenote	cenote	CDS	116957	117556	GCA_001837635.1	KV833376.1	GCA_001837635.1|KV833376.1	GCA_001837635.1_KV833376.1	GCA_001837635.1|KV833376.1	GCA_001837635_1_20	GCA_001837635_1_20@C5	11896	12495	GCA_001837635_1_20_104	GCA_001837635_1_20_104	-	310033	.	PDB:4XLN_L	DNA-directed-RNA-polymerase-subunit	MNDRQIDQVLVERAQKGDHKAFEMLMSKYQRRLNRLISRFIQDEHEVHDVTQEAMIRAYRALANFRGESAFYTWLYRIGINTAKNFLTTSGRQFFVSSEAANEEGDVLDLTDQIADYHTPEAEMMNREILQTVEASIAQLPDDMRQAITLREMDGLSYEEIARVVDCPIGTVRSRIFRARELIAKDLRPLLDTSEDQRW*	common_virus_hmm	common_virus	C5	19670	105062	124732	GCA_001837635.1|KV833376.1@region_105063_124732@tool_cenote_CDS_0018	persistent	direct	high	599	0.998	GCA_001837635.1_01306
GCA_001837635.1|KV833376.1@region_105063_124732@tool_cenote	cenote	CDS	117744	119099	GCA_001837635.1	KV833376.1	GCA_001837635.1|KV833376.1	GCA_001837635.1_KV833376.1	GCA_001837635.1|KV833376.1	GCA_001837635_1_20	GCA_001837635_1_20@C5	12683	14038	GCA_001837635_1_20_105	GCA_001837635_1_20_105	-	310033	.	PRK10660	tRNA(Ile)-lysidine synthetase; Provisional	MSQVSPDSLFKSFQAAFPDLPSHTVFEVGLSGGLDSVVLLHLLHRMREFRHFDLRAVHVHHGLSTNADSWAKFCQDYCQRLDVALRVCRVNVEKQGKGLEAAARAARYQAFSDGLKKIIVLAHHRNDQIETFMLSAVRGGGLRGMAAMPVWRDLNEETQIWRPLLAFSRQELAEYAQQWRLSFVEDESNEDSGYLRNWVRNQALPQWQQRIPNFEQQICANVRLLQEDLHLLDELIESEYQRISPSGIFSISLWRKCTPLLRRRLLWYFLRKQTESLPSYHSIVDFARVLETADQAQLNLSDGELVAYRDKLFVCQESEFQKLPWCNGSEVRGRLKDILLENGFVLLPFKGGLSEEELEQPAVLRNVAKGDVIQSGQREKSVEKLLQECHIVPLVRKYWPIILSMGNKCLAVVNLRVGSDVRMEQGYLPVYEKLAKYIAKDKVADSKFSNY*	mmseqs_cdd	nonviral_gene	C5	19670	105062	124732	GCA_001837635.1|KV833376.1@region_105063_124732@tool_cenote_CDS_0019	persistent	direct	high	1355	0.999	GCA_001837635.1_01307
GCA_001837635.1|KV833376.1@region_105063_124732@tool_cenote	cenote	CDS	119188	120147	GCA_001837635.1	KV833376.1	GCA_001837635.1|KV833376.1	GCA_001837635.1_KV833376.1	GCA_001837635.1|KV833376.1	GCA_001837635_1_20	GCA_001837635_1_20@C5	14127	15086	GCA_001837635_1_20_106	GCA_001837635_1_20_106	-	310033	.	PRK05724	acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	MKPVFLDFEQPIAELTNKIDELRFVQDESAVDISDEIARLQKKSSELTKSIFSKLTPAQISQVSRHPQRPYTLDYINGIFTDFEELHGDRHYSDDHAIVGGLARFNGQSVMVIGHQKGRDTKEKIRRNFGMPRPEGYRKALRLMQTAEKFNIPVMTFVDTPGAYPGIGAEERGQSEAIGRNLYELTRLHVPVLCTIIGEGGSGGALAVAVGDYVNMLQYSTYSVISPEGCASILWKTAEKAADAAQALGITAKRLQELDVIDKVIDEPLGGAHRDFETTMKNVKTVLEQQLSEAQSMTMPDLLSRRFDRIMAYGKFTDK*	mmseqs_cdd	nonviral_gene	C5	19670	105062	124732	GCA_001837635.1|KV833376.1@region_105063_124732@tool_cenote_CDS_0020	persistent	direct	high	959	0.999	GCA_001837635.1_01308
GCA_001837635.1|KV833376.1@region_105063_124732@tool_cenote	cenote	CDS	120352	120753	GCA_001837635.1	KV833376.1	GCA_001837635.1|KV833376.1	GCA_001837635.1_KV833376.1	GCA_001837635.1|KV833376.1	GCA_001837635_1_20	GCA_001837635_1_20@C5	15291	15692	GCA_001837635_1_20_107	GCA_001837635_1_20_107	+	310033	.	COG1188	Ribosomal 50S subunit-recycling heat shock protein, contains S4 domain [Translation, ribosomal structure and biogenesis]. 	MKNDHDNSSMRLDKWLWAARFFKTRALAQKHIELGRVLVNGSKVKNSKNISAGDTIDMTLNSLPYKFKVAALNHQRRPAPEARLLYEEDMKTAAEREAQKQLDQASRISAAYPDGRPTKRDRRQLDRMKRDSW*	mmseqs_cdd	nonviral_gene	C5	19670	105062	124732	GCA_001837635.1|KV833376.1@region_105063_124732@tool_cenote_CDS_0021	persistent	direct	high	401	0.998	GCA_001837635.1_01309
GCA_001837635.1|KV833376.1@region_105063_124732@tool_cenote	cenote	CDS	120857	121975	GCA_001837635.1	KV833376.1	GCA_001837635.1|KV833376.1	GCA_001837635.1_KV833376.1	GCA_001837635.1|KV833376.1	GCA_001837635_1_20	GCA_001837635_1_20@C5	15796	16914	GCA_001837635_1_20_108	GCA_001837635_1_20_108	-	310033	.	PF16930.5	Putative porin	MKFQTKLIATCILLASSSYSLAENADGGRDAAALATTNDYVNSGSIIRKDDDKISIFNDLLTVNGGLRVRADTKDINANNSSVNPTPEDTNVNFNAEFWLRAKLYKDWKLVAQIEPNIDLETGKFNGDHDVPVNKLYAEGTVYNNIKARVGKFGAFSSYGRVWDTEVTGGEIFFDNKTLPTKIYAGRRTGNLNDNAWGIGGRRRHFAAIQSVLPVNENINVGATVSYMKDIDVRGAKKNAVFGEIGTDIKFNDDWRWMAAVSKSNIKAYNDAGQKIKNDGVFTEVRYKSADWNVRNSYDVFLNYRRVGSLSGVSSVEDYSKNVQGVQIGATYIPWKNWKLKGFYLAGKQVTPTVGTDKQDVNVIRGQLEYKF*	hhsuite_tools	hypothetical_protein	C5	19670	105062	124732	GCA_001837635.1|KV833376.1@region_105063_124732@tool_cenote_CDS_0022	persistent	direct	high	1118	0.999	GCA_001837635.1_01310
GCA_001837635.1|KV833376.1@region_105063_124732@tool_cenote	cenote	CDS	122153	123916	GCA_001837635.1	KV833376.1	GCA_001837635.1|KV833376.1	GCA_001837635.1_KV833376.1	GCA_001837635.1|KV833376.1	GCA_001837635_1_20	GCA_001837635_1_20@C5	17092	18855	GCA_001837635_1_20_109	GCA_001837635_1_20_109	-	310033	.	PDB:3UPU_B	ATP-dependent-DNA-helicase	MNPTDSILSSAADAAIAFFRRHEVQGASVIEPYVVRLFAALQNGHSFIYLDKSDVDALSNLPNLVGNADKPLILQGRKLFLGRMWQLEHDLAVEIKRLASAEAEEVNFMAASKSLSDWFDPKDSKEQRDAAALALLQNFMLITGGPGTGKTTTVAKLLGLICNNSTKLPRIALAAPTGKAAAHMARALQRALDGFDLSPNIKAHLENLEGQTVHRLLKLRPPQMRPAFNHEHPLALDVLVVDEASMLDLPLVLDLLRAVPTGCRLVLLGDENQLPSVGLGAVLAALSRPTALDKETAEKLEVYLPDHGFEIKERPQALSQNNAKLTFSHRFGAGSGIGCLARAVVSGEKQTAVEQFDKFPKELEMKSGRLKEQVALLYQKQQDYWQAVAENNVALAYGHAADVVVLAAWRQDADDLNQAYQEYLQRQGKVSGEMPWFAGQIIMITHNDYMLEVFNGDIGLIMKDEESLNGLSAYFPEKDGFKKIAISRLPDFESAFAMTVHKSQGSEYREVWLLPPSVPATTEGEEEARGLDKALLYTAITRARERFVFWGNAEELVKAVGCHQKRRTALADALERQFEQPDMQASV*	common_virus_hmm	common_virus	C5	19670	105062	124732	GCA_001837635.1|KV833376.1@region_105063_124732@tool_cenote_CDS_0023	persistent	direct	high	1763	0.999	GCA_001837635.1_01311
GCA_001837635.1|KV833376.1@region_105063_124732@tool_cenote	cenote	CDS	124048	124731	GCA_001837635.1	KV833376.1	GCA_001837635.1|KV833376.1	GCA_001837635.1_KV833376.1	GCA_001837635.1|KV833376.1	GCA_001837635_1_20	GCA_001837635_1_20@C5	18987	19670	GCA_001837635_1_20_110	GCA_001837635_1_20_110	-	310033	.	TIGR02211	lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. [Protein fate, Protein and peptide secretion and trafficking]	MSKTILKCIGVGKSYNDGALNVQVLNHLDFEVAEAESVSIIGSSGSGKSTLLHLLGGLDMPSEGKVILMDQDLGGLSQKQLGELRNRYLGFVYQFHHLLPEFSALENVMMPLLIGKMPKAMAEEKAVKMLKKVGLDKRMLHRPSELSGGERQRAAIARALVNEPKCLLADEPTGNLDRKNAQNVLDMMLDLKRELNTSLIVVTHDDELAERFDRVMTMKDGSLQVLQ*	mmseqs_cdd	nonviral_gene	C5	19670	105062	124732	GCA_001837635.1|KV833376.1@region_105063_124732@tool_cenote_CDS_0024	persistent	direct	high	683	0.999	GCA_001837635.1_01312
GCA_001837635.1|KV833352.1@region_38463_45146@tool_cenote	cenote	CDS	38462	39355	GCA_001837635.1	KV833352.1	GCA_001837635.1|KV833352.1	GCA_001837635.1_KV833352.1	GCA_001837635.1|KV833352.1	GCA_001837635_1_6	GCA_001837635_1_6@C3	1	894	GCA_001837635_1_6_30	GCA_001837635_1_6_30	+	55190	.	PFAM:PF05840.12	Rep-protein	MNRSASRSAERALPCLNSNNCIETANSGEIKQLPSQYENRKADTLNEFSTSYKKSTTALEMNVKAFIEAFGLNKVGFLTLTFADDVTDPKEAQRRFHSLRTNFLKRHFPEYVCVYERTKKGRIHFHLIVNTRVDIRRGLNFREIAAGRYSSANPTLRQLWALLRENVHKYGFGRTELLPVKTNSKGLARYVSKYISKHINIRLPEDKGYRLVRTSMDKKSVWKVANSNFAFVSKGSKEWRRKLKKWVEQVESYLNLVAEWKHRAALPRITQDNYNTVLASVLSPKWAFKNRETIINM*	rep_hall_hmm	common_virus	C3	6684	38462	45146	GCA_001837635.1|KV833352.1@region_38463_45146@tool_cenote_CDS_0001	shell	direct	high	893	0.999	GCA_001837635.1_00215
GCA_001837635.1|KV833352.1@region_38463_45146@tool_cenote	cenote	CDS	39515	39784	GCA_001837635.1	KV833352.1	GCA_001837635.1|KV833352.1	GCA_001837635.1_KV833352.1	GCA_001837635.1|KV833352.1	GCA_001837635_1_6	GCA_001837635_1_6@C3	1054	1323	GCA_001837635_1_6_31	GCA_001837635_1_6_31	+	55190	.	.	hypothetical protein	MTQETERRQGMFVIASFDRMFTRERKNQDGTFSKTHYVGLIIRSDTETRLCEVRTKHPEKYEGYKPQQIVSMQVFPRAFKDNIYYSDES*	.	hypothetical_protein	C3	6684	38462	45146	GCA_001837635.1|KV833352.1@region_38463_45146@tool_cenote_CDS_0002	shell	direct	high	269	0.996	GCA_001837635.1_00216
GCA_001837635.1|KV833352.1@region_38463_45146@tool_cenote	cenote	CDS	39872	40093	GCA_001837635.1	KV833352.1	GCA_001837635.1|KV833352.1	GCA_001837635.1_KV833352.1	GCA_001837635.1|KV833352.1	GCA_001837635_1_6	GCA_001837635_1_6@C3	1411	1632	GCA_001837635_1_6_32	GCA_001837635_1_6_32	+	55190	.	CDD:PHA00979	putative-major-coat-protein	MSIKTKFQQAAAFVTVAALPVLAFADDNGLVDAAKTELGALKTGIISVGAVAIALAVAAVSISVIKSAVKRSA*	hallmark_hmm	common_virus	C3	6684	38462	45146	GCA_001837635.1|KV833352.1@region_38463_45146@tool_cenote_CDS_0003	shell	direct	high	221	0.995	GCA_001837635.1_00217
GCA_001837635.1|KV833352.1@region_38463_45146@tool_cenote	cenote	CDS	40102	40404	GCA_001837635.1	KV833352.1	GCA_001837635.1|KV833352.1	GCA_001837635.1_KV833352.1	GCA_001837635.1|KV833352.1	GCA_001837635_1_6	GCA_001837635_1_6@C3	1641	1943	GCA_001837635_1_6_33	GCA_001837635_1_6_33	+	55190	.	.	hypothetical protein	MGYQVGRICHETAEQATNEVMTQVVPTVDKDGVLHHLVFNGQTWTYNEQTVKLQFPQCDSMKYYRLGEQIGTQMMFAMISLFAVVVIVKLVLWQRERNEE*	.	hypothetical_protein	C3	6684	38462	45146	GCA_001837635.1|KV833352.1@region_38463_45146@tool_cenote_CDS_0004	shell	direct	high	302	0.997	GCA_001837635.1_00218
GCA_001837635.1|KV833352.1@region_38463_45146@tool_cenote	cenote	CDS	40394	42184	GCA_001837635.1	KV833352.1	GCA_001837635.1|KV833352.1	GCA_001837635.1_KV833352.1	GCA_001837635.1|KV833352.1	GCA_001837635_1_6	GCA_001837635_1_6@C3	1933	3723	GCA_001837635_1_6_34	GCA_001837635_1_6_34	+	55190	.	PFAM:PF05616.12	attachment-protein	MKNDTRISIFIGYCKAHNISRLSVCLGSLLVVGQAWAEVGLPPPAQHQNAGFPSDQALQRRGYDPKTGIWKVDVQNNGKPTVTKNGGNINGSQGKTVTVTGRYGETGTMNTNVNQRVNVGKVETVLGGTLAGATAMGGAIGSDYAAWTYRDIKNGDWAMAARNGVGAILTGLSKLDITGLGSGINSFLDKTGLRDGASQEQISNAIQKAAQAQREAEAQGNYQKAVANAAAKKAAEAAQKAQQKDQQKKEEQKKDEEAKKNGMIKYQLIVKIDSSYQNYVFYSKSEININGSEGNTLNNSPAYLGRFVSHVDIDIPNATPSRISVSTPSDKYVIVYYNSYKEGTVPEAEKKKLAQNQSEVKAEDFMLTQKEMLDILKRMLENNQTNHAELMNQLAKMGVMNQSADQSTFSPDTALSAPYTPEGSSTPQQTRFKMNQDGTVGVDYVPRPDLKPNSPEAPNKPEKTTPSRQESPDTPNAPNSPNSPNTPNESNSQNKQNQNDKEKDFCQKNPNAAQCMPSGEDIQLPEQTIDLNFKPLDVFQSDGKCPAPRSVDFGALGQVEFSYDPLCDLARKLRPIFIAICVLTCAYFVYESVKEL*	common_virus_hmm	common_virus	C3	6684	38462	45146	GCA_001837635.1|KV833352.1@region_38463_45146@tool_cenote_CDS_0005	shell	direct	high	1790	0.999	GCA_001837635.1_00219
GCA_001837635.1|KV833352.1@region_38463_45146@tool_cenote	cenote	CDS	42186	42467	GCA_001837635.1	KV833352.1	GCA_001837635.1|KV833352.1	GCA_001837635.1_KV833352.1	GCA_001837635.1|KV833352.1	GCA_001837635_1_6	GCA_001837635_1_6@C3	3725	4006	GCA_001837635_1_6_35	GCA_001837635_1_6_35	+	55190	.	PFAM:PF10734.8	Minor-Head-Virion-Protein	MNWASLITGVLMSVAGRILTAVGLSFISVTGLNALQDYFINEISRSIGGFPDEALQILYIAGFGVILNWIFGAFSFVISIKGFKKLSTIIQSK*	hallmark_hmm	common_virus	C3	6684	38462	45146	GCA_001837635.1|KV833352.1@region_38463_45146@tool_cenote_CDS_0006	shell	direct	high	281	0.996	GCA_001837635.1_00220
GCA_001837635.1|KV833352.1@region_38463_45146@tool_cenote	cenote	CDS	42477	43652	GCA_001837635.1	KV833352.1	GCA_001837635.1|KV833352.1	GCA_001837635.1_KV833352.1	GCA_001837635.1|KV833352.1	GCA_001837635_1_6	GCA_001837635_1_6@C3	4016	5191	GCA_001837635_1_6_36	GCA_001837635_1_6_36	+	55190	.	PFAM:PF05707.11	Zonular-occludens-toxin-(Zot)	MLYLLTGVPGSGKTLKVVSMLAKQKDFMNRPLYVDGILDLKIPHEEIPEGESIQTWPKWAPPGAIIVVDECQRIFRPRPSGSKVPDYVAELETHRHRGLDFLLITQHPRLIDVHLRGLIEHHTHFGKTNLGLRRKLEWTTGGAKDPESRANIREALISVYRLDKSVYGLYKSAEEHTKIRTKRSKVLYLIPIAIAMLGGGLYYFASFWKNMEKPIETAGQTAQAHVAAQAASPEAQAAAAPAADDGAAGQYAAAKVQTPSEPPKPHLTEEDYQPRIAERPETAPIYDGMNKAVKVMPWPAACIKAENRCTCYTDQGTKIKDIGKQTCLNYVKDGLPFNPYKTKTAEAVKPTETAYTPDAPQVLTMGGATPQNLMYDGYNDKALTNVGGKVN*	hallmark_hmm	common_virus	C3	6684	38462	45146	GCA_001837635.1|KV833352.1@region_38463_45146@tool_cenote_CDS_0007	shell	direct	high	1175	0.999	GCA_001837635.1_00221
GCA_001837635.1|KV833352.1@region_38463_45146@tool_cenote	cenote	CDS	43652	43813	GCA_001837635.1	KV833352.1	GCA_001837635.1|KV833352.1	GCA_001837635.1_KV833352.1	GCA_001837635.1|KV833352.1	GCA_001837635_1_6	GCA_001837635_1_6@C3	5191	5352	GCA_001837635_1_6_37	GCA_001837635_1_6_37	+	55190	.	.	hypothetical protein	MNAGLAFFLGIWAATTYERKGWRGFFKYFVLPMCIMSLIGAAVIIYYGYNVAK*	.	hypothetical_protein	C3	6684	38462	45146	GCA_001837635.1|KV833352.1@region_38463_45146@tool_cenote_CDS_0008	shell	ambiguous	low	2	0.012	GCA_001837635.1_00221
GCA_001837635.1|KV833352.1@region_38463_45146@tool_cenote	cenote	CDS	44198	45145	GCA_001837635.1	KV833352.1	GCA_001837635.1|KV833352.1	GCA_001837635.1_KV833352.1	GCA_001837635.1|KV833352.1	GCA_001837635_1_6	GCA_001837635_1_6@C3	5737	6684	GCA_001837635_1_6_38	GCA_001837635_1_6_38	+	55190	.	PFAM:PF01548.16	Transposase	MYYLGIDVSKKTIDCCLISDSIFYERRFDNIEDGFRRLDDWIQEYTTETVHCCCEATGIYHEAIAAHLRQKHIVSIVNPSKIKGFREAEQTRTKTDRQDARLIAEYCRRMQPKEWQPPTEEQKYLQAITDYIARLKQQRAAEQTKHQTAPDTIRHHIQTTIDHLNRLITTVQNELKDFYRQNPIYNEKKNRLKTIDGIGESAASVLLAKLTRYDFANQNQFAAYLGLDPKIKDSGTSVKGKPRISKQGQKNARKALYMPALVAYRMNAFPAFTARLKARGKPPKLIIVAIMRKLAVIAYQLYKTGKDYDRSRYRN*	common_virus_hmm	common_virus	C3	6684	38462	45146	GCA_001837635.1|KV833352.1@region_38463_45146@tool_cenote_CDS_0009	cloud	direct	high	947	0.999	GCA_001837635.1_00222